AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54803.t1 MTR_1g094930 99.094 331 3 0 1 331 1 331 0.0 675
MS.gene54803.t1 MTR_1g094930 98.729 236 3 0 96 331 1 236 1.14e-173 481
MS.gene54803.t1 MTR_1g116010 56.202 258 77 10 74 329 22 245 2.61e-74 229
MS.gene54803.t1 MTR_2g094600 46.774 186 70 6 121 306 124 280 6.96e-43 150
MS.gene54803.t1 MTR_1g006650 34.783 322 133 11 9 306 30 298 6.70e-38 138
MS.gene54803.t1 MTR_3g109760 35.000 300 132 9 12 306 30 271 1.80e-36 134
MS.gene54803.t1 MTR_4g058910 65.957 94 27 1 238 331 310 398 1.67e-35 133
MS.gene54803.t1 MTR_7g085410 35.938 256 129 6 58 306 25 252 4.47e-35 129
MS.gene54803.t1 MTR_4g071590 57.692 104 33 2 203 306 183 275 2.17e-34 127
MS.gene54803.t1 MTR_4g471590 57.692 104 33 2 203 306 183 275 2.17e-34 127
MS.gene54803.t1 MTR_6g032830 36.015 261 122 9 67 308 24 258 2.45e-34 126
MS.gene54803.t1 MTR_5g021340 35.401 274 122 10 48 308 135 366 7.89e-34 128
MS.gene54803.t1 MTR_3g117380 72.603 73 19 1 234 306 222 293 6.92e-33 124
MS.gene54803.t1 MTR_8g013950 81.538 65 12 0 242 306 226 290 1.05e-32 124
MS.gene54803.t1 MTR_5g007600 55.238 105 45 2 203 306 220 323 1.75e-31 120
MS.gene54803.t1 MTR_5g007600 54.000 100 44 2 207 305 122 220 2.31e-28 112
MS.gene54803.t1 MTR_8g076340 62.366 93 26 3 216 308 201 284 2.25e-31 119
MS.gene54803.t1 MTR_1g046680 80.000 65 13 0 242 306 172 236 2.38e-31 118
MS.gene54803.t1 MTR_7g446110 61.290 62 24 0 242 303 187 248 1.48e-20 89.7
MS.gene54803.t1 MTR_7g445950 58.065 62 26 0 242 303 120 181 2.81e-19 84.3
MS.gene54803.t1 MTR_7g445980 61.667 60 22 1 246 304 37 96 7.35e-19 80.9
MS.gene54803.t1 MTR_7g446070 36.567 134 65 2 175 303 75 193 8.53e-19 83.6
MS.gene54803.t1 MTR_7g106090 55.844 77 33 1 177 253 36 111 8.04e-17 75.5
MS.gene54803.t1 MTR_5g020230 52.083 48 23 0 227 274 107 154 2.95e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54803.t1 AT3G54810 71.875 96 20 2 240 328 227 322 2.78e-42 149
MS.gene54803.t1 AT3G54810 71.875 96 20 2 240 328 227 322 2.78e-42 149
MS.gene54803.t1 AT1G08010 40.254 236 111 5 85 318 89 296 3.53e-42 148
MS.gene54803.t1 AT1G08010 40.254 236 111 5 85 318 89 296 3.53e-42 148
MS.gene54803.t1 AT1G08010 40.254 236 111 5 85 318 89 296 3.53e-42 148
MS.gene54803.t1 AT5G25830 39.068 279 124 11 29 306 50 283 2.14e-38 139
MS.gene54803.t1 AT1G08000 42.051 195 88 3 115 309 116 285 2.74e-37 135
MS.gene54803.t1 AT1G08000 42.051 195 88 3 115 309 116 285 2.74e-37 135
MS.gene54803.t1 AT4G32890 34.641 306 120 12 17 306 20 261 1.84e-36 133
MS.gene54803.t1 AT5G66320 38.636 264 123 9 55 315 95 322 2.62e-36 134
MS.gene54803.t1 AT5G66320 38.636 264 123 9 55 315 95 322 2.62e-36 134
MS.gene54803.t1 AT3G24050 78.462 65 14 0 242 306 194 258 1.13e-31 120
MS.gene54803.t1 AT3G51080 71.053 76 21 1 242 317 221 295 1.14e-31 121
MS.gene54803.t1 AT4G36240 54.545 99 43 1 208 306 132 228 3.15e-31 118
MS.gene54803.t1 AT3G60530 74.242 66 17 0 241 306 157 222 1.03e-30 116
MS.gene54803.t1 AT2G28340 65.333 75 26 0 244 318 193 267 1.31e-30 117
MS.gene54803.t1 AT2G45050 72.727 66 18 0 241 306 178 243 3.35e-30 115
MS.gene54803.t1 AT4G34680 63.158 76 28 0 242 317 180 255 6.80e-29 112
MS.gene54803.t1 AT4G34680 63.158 76 28 0 242 317 180 255 6.80e-29 112
MS.gene54803.t1 AT3G45170 40.000 140 79 3 168 306 44 179 4.68e-28 108
MS.gene54803.t1 AT5G26930 54.545 44 18 1 234 277 20 61 4.85e-11 59.7

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCAGCAGGCCGGTATTC+GGG 0.281895 1.2:+73259820 None:intergenic
AAATGAATCGTCCACAATAT+TGG 0.301923 1.2:+73260413 None:intergenic
ACAACTCGTTGGCGAGTATC+TGG 0.323132 1.2:-73262036 MS.gene54803:CDS
CTGCTTTCAAGGACAGAAAT+AGG 0.331261 1.2:+73260294 None:intergenic
GTTCGAAGATCTTCTTTCAT+TGG 0.338071 1.2:-73260445 MS.gene54803:CDS
GTCTCTCCAGAAGAGAGCTT+TGG 0.342561 1.2:+73260036 None:intergenic
CAATGCATGCATTTCCTAAC+AGG 0.350621 1.2:+73259940 None:intergenic
AAGGCGAGAACATTGGAGTT+TGG 0.360098 1.2:+73259700 None:intergenic
AGCAGGAACTGCTGCTTTCA+AGG 0.362822 1.2:+73260283 None:intergenic
ACTAGCAGCAGGCCGGTATT+CGG 0.363594 1.2:+73259819 None:intergenic
TCTCTACTCACCGGATCAAC+GGG 0.368770 1.2:+73261953 None:intergenic
GTCCGCAAGGCACGGGGATG+GGG 0.378251 1.2:+73260232 None:intergenic
GGCTGTGGGGCGTGGACGCT+TGG 0.384746 1.2:+73260200 None:intergenic
TATCCTTGCATCTCATTTCA+AGG 0.385918 1.2:+73259752 None:intergenic
CAATGGAGGGCAGGTCCAAT+GGG 0.390212 1.2:-73259898 MS.gene54803:CDS
CGTCCGCAAGGCACGGGGAT+GGG 0.396980 1.2:+73260231 None:intergenic
GAGGTCTGAAGTACTATTGC+CGG 0.397375 1.2:+73261988 None:intergenic
GCACTCCAATTCGCACAAAA+AGG 0.399415 1.2:-73259776 MS.gene54803:CDS
ACAATGGAGGGCAGGTCCAA+TGG 0.404651 1.2:-73259899 MS.gene54803:CDS
CCTTGGAATACAACATTTGA+AGG 0.412271 1.2:-73259681 None:intergenic
TTGGTTTCTTGACAATAATC+CGG 0.416836 1.2:+73260055 None:intergenic
TGCCCTCCATTGTGGAGTCT+TGG 0.422561 1.2:+73259909 None:intergenic
CGTGCACGTCCGCAAGGCAC+GGG 0.424581 1.2:+73260225 None:intergenic
AAGAAACCAAAGCTCTCTTC+TGG 0.429167 1.2:-73260042 MS.gene54803:CDS
CCCTACTTCCTCTTCTGTTG+AGG 0.447338 1.2:-73260145 MS.gene54803:CDS
TTCTGTTCGCCACTGTCAGC+TGG 0.447903 1.2:+73259973 None:intergenic
AGAATGGTTCACTACCTGTT+AGG 0.449879 1.2:-73259954 MS.gene54803:CDS
GCTGTCAGCAAGGAGGACTC+TGG 0.452116 1.2:-73260342 MS.gene54803:CDS
AAACTCCAATGTTCTCGCCT+TGG 0.452478 1.2:-73259698 MS.gene54803:CDS
GAAAGCAGCAGTTCCTGCTC+TGG 0.453160 1.2:-73260279 MS.gene54803:CDS
GCTTCATTGCCCTCCTCCGC+GGG 0.453744 1.2:-73262064 MS.gene54803:CDS
TGCGAATTGGAGTGCACAGC+TGG 0.458877 1.2:+73259784 None:intergenic
ATCTGAAGACAGCGCCTTGG+TGG 0.463733 1.2:+73260098 None:intergenic
GGCGGAGCTCCCCGTTGATC+CGG 0.465097 1.2:-73261963 MS.gene54803:intron
TGGTTTCTTGACAATAATCC+GGG 0.466726 1.2:+73260056 None:intergenic
GCGTGCACGTCCGCAAGGCA+CGG 0.472888 1.2:+73260224 None:intergenic
TGCGGTGTACGCTACAAGTC+GGG 0.473402 1.2:-73259853 MS.gene54803:CDS
GCGGTGTCAACGTCGTCGAC+GGG 0.476293 1.2:+73262091 None:intergenic
GGATTGAAGGCTGTGGGGCG+TGG 0.478430 1.2:+73260192 None:intergenic
CCTTCAAATGTTGTATTCCA+AGG 0.482354 1.2:+73259681 None:intergenic
AGCGGTGTCAACGTCGTCGA+CGG 0.482359 1.2:+73262090 None:intergenic
CTCTCTACTCACCGGATCAA+CGG 0.485631 1.2:+73261952 None:intergenic
AGATCTTCTTTCATTGGAGT+GGG 0.485791 1.2:-73260439 MS.gene54803:CDS
AAGATCTTCTTTCATTGGAG+TGG 0.486353 1.2:-73260440 MS.gene54803:CDS
ACGTCCGCAAGGCACGGGGA+TGG 0.486480 1.2:+73260230 None:intergenic
CCTCAACAGAAGAGGAAGTA+GGG 0.487341 1.2:+73260145 None:intergenic
GTTGTAGTTTCCCGCGGAGG+AGG 0.488859 1.2:+73262054 None:intergenic
CGCTTCATTGCCCTCCTCCG+CGG 0.491875 1.2:-73262065 MS.gene54803:CDS
CATGGCAGAACGAGGATTGA+AGG 0.499510 1.2:+73260179 None:intergenic
AGCAGCAGTTCCTGCTCTGG+TGG 0.510966 1.2:-73260276 MS.gene54803:CDS
GCCTTGGTGGAGATAACATT+AGG 0.511767 1.2:+73260111 None:intergenic
AGAACGAGGATTGAAGGCTG+TGG 0.514782 1.2:+73260185 None:intergenic
GAACGAGGATTGAAGGCTGT+GGG 0.520494 1.2:+73260186 None:intergenic
ATTGGACCTGCCCTCCATTG+TGG 0.524395 1.2:+73259901 None:intergenic
AACACCGAGTCAGACTCATT+TGG 0.524475 1.2:+73262013 None:intergenic
GGAGGGCAATGAAGCGGCAG+CGG 0.526729 1.2:+73262072 None:intergenic
TCAAGGACAGAAATAGGACT+TGG 0.539012 1.2:+73260300 None:intergenic
CTTGCAGAGAAGAAAATGGC+TGG 0.540090 1.2:-73262169 None:intergenic
TTGCTGACAGCTGATGATGA+TGG 0.540546 1.2:+73260354 None:intergenic
CTGTCAGCAAGGAGGACTCT+GGG 0.542617 1.2:-73260341 MS.gene54803:CDS
CGCGGAGGAGGGCAATGAAG+CGG 0.545853 1.2:+73262066 None:intergenic
GCCGGTATTCGGGGAAAAGT+CGG 0.549249 1.2:+73259830 None:intergenic
AAAATCTGAAGACAGCGCCT+TGG 0.556439 1.2:+73260095 None:intergenic
TTGGTGCGTGCACGTCCGCA+AGG 0.556777 1.2:+73260219 None:intergenic
TAGCAGCAGGCCGGTATTCG+GGG 0.557503 1.2:+73259821 None:intergenic
CATGTTCTCCTCAACAGAAG+AGG 0.558411 1.2:+73260137 None:intergenic
GTCCCCATCCCCGTGCCTTG+CGG 0.560563 1.2:-73260234 MS.gene54803:CDS
CCACTGTCAGCTGGAGCAGT+AGG 0.567950 1.2:+73259982 None:intergenic
TCAGCTGGAGCAGTAGGAAG+TGG 0.567950 1.2:+73259988 None:intergenic
GGAGAGTCTCACAATGAAAG+TGG 0.570456 1.2:-73260385 MS.gene54803:CDS
TTGTAGTTTCCCGCGGAGGA+GGG 0.576688 1.2:+73262055 None:intergenic
TCCTCAACAGAAGAGGAAGT+AGG 0.578279 1.2:+73260144 None:intergenic
CGCGGGAAACTACAACTCGT+TGG 0.579753 1.2:-73262047 MS.gene54803:CDS
AACCAAGACTCCACAATGGA+GGG 0.579995 1.2:-73259911 MS.gene54803:CDS
AAGACTCCACAATGGAGGGC+AGG 0.580027 1.2:-73259907 MS.gene54803:CDS
GTATTCCAAGGCGAGAACAT+TGG 0.583263 1.2:+73259693 None:intergenic
CAAAACGTTGGACTAGCAGC+AGG 0.583276 1.2:+73259808 None:intergenic
CTGGCCAAATGAGTCTGACT+CGG 0.584259 1.2:-73262017 MS.gene54803:CDS
GCTGACAGTGGCGAACAGAA+TGG 0.590330 1.2:-73259970 MS.gene54803:CDS
TTGCGGTGTACGCTACAAGT+CGG 0.591752 1.2:-73259854 MS.gene54803:CDS
AAAACACTCTGCAATGCTTG+CGG 0.597816 1.2:-73259871 MS.gene54803:CDS
ATCATCATCAGCTGTCAGCA+AGG 0.601103 1.2:-73260352 MS.gene54803:CDS
GTGCACGTCCGCAAGGCACG+GGG 0.603513 1.2:+73260226 None:intergenic
CAACGAGTTGTAGTTTCCCG+CGG 0.609630 1.2:+73262048 None:intergenic
TGCACAGCTGGACAAAACGT+TGG 0.609672 1.2:+73259796 None:intergenic
GGTCCTTGAAATGAGATGCA+AGG 0.611789 1.2:-73259755 MS.gene54803:CDS
CAATAGTACTTCAGACCTCT+CGG 0.613630 1.2:-73261984 MS.gene54803:CDS
ACGTTGGACTAGCAGCAGGC+CGG 0.619617 1.2:+73259812 None:intergenic
CTCAACAGAAGAGGAAGTAG+GGG 0.627104 1.2:+73260146 None:intergenic
TAACCAAGACTCCACAATGG+AGG 0.629519 1.2:-73259912 MS.gene54803:CDS
CGGTGTCAACGTCGTCGACG+GGG 0.629631 1.2:+73262092 None:intergenic
AGTAGGGGAAATGAGTTGCA+TGG 0.640358 1.2:+73260161 None:intergenic
GCCTAATGTTATCTCCACCA+AGG 0.643801 1.2:-73260112 MS.gene54803:CDS
CGAGTTGTAGTTTCCCGCGG+AGG 0.645299 1.2:+73262051 None:intergenic
ATGAGTTGCATGGCAGAACG+AGG 0.661756 1.2:+73260171 None:intergenic
AACGAGGATTGAAGGCTGTG+GGG 0.665902 1.2:+73260187 None:intergenic
AATGGAGGGCAGGTCCAATG+GGG 0.678887 1.2:-73259897 MS.gene54803:CDS
CAACGGGGAGCTCCGCCGAG+AGG 0.679446 1.2:+73261969 None:intergenic
CCTACTGCTCCAGCTGACAG+TGG 0.685510 1.2:-73259982 MS.gene54803:CDS
ATCATCAGCTGTCAGCAAGG+AGG 0.691864 1.2:-73260349 MS.gene54803:CDS
GGAGTGGGTGTCCAATATTG+TGG 0.693703 1.2:-73260424 MS.gene54803:CDS
AGATAACCAAGACTCCACAA+TGG 0.734467 1.2:-73259915 MS.gene54803:CDS
CTCTACTCACCGGATCAACG+GGG 0.746525 1.2:+73261954 None:intergenic
GATGGGGACGTAAATCCCTG+TGG 0.752387 1.2:+73260248 None:intergenic
TAGTACTTCAGACCTCTCGG+CGG 0.759629 1.2:-73261981 MS.gene54803:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAACAAACA+TGG + chr1.2:73260945-73260964 None:intergenic 10.0%
!! AAATAAAATAAAACAAACAT+GGG + chr1.2:73260944-73260963 None:intergenic 10.0%
!! GAAAAAAATTATTTCATAAT+AGG - chr1.2:73259969-73259988 MS.gene54803:CDS 10.0%
!!! AACTTTACTTTATTTATTTT+TGG + chr1.2:73260574-73260593 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG - chr1.2:73260703-73260722 MS.gene54803:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG - chr1.2:73260704-73260723 MS.gene54803:intron 10.0%
!! CTCTACAAAAAAAAATAATA+TGG + chr1.2:73260339-73260358 None:intergenic 15.0%
!! TAAAAATTAACCTAAAAAAG+TGG + chr1.2:73260477-73260496 None:intergenic 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG - chr1.2:73261016-73261035 MS.gene54803:intron 15.0%
!!! TAATAAAGTTTTTTTTATCG+AGG - chr1.2:73260286-73260305 MS.gene54803:CDS 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG + chr1.2:73260268-73260287 None:intergenic 15.0%
!! ATTATTTGGATCATCATTAT+TGG - chr1.2:73260821-73260840 MS.gene54803:intron 20.0%
!! CATGATACTTATTAATACAA+AGG + chr1.2:73261185-73261204 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG - chr1.2:73260896-73260915 MS.gene54803:intron 20.0%
!! TGAAGGTTCATTATTTATTT+AGG + chr1.2:73260893-73260912 None:intergenic 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG - chr1.2:73260386-73260405 MS.gene54803:CDS 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG + chr1.2:73260627-73260646 None:intergenic 20.0%
!!! TGGTTTTTCTTTTTTGATAA+AGG - chr1.2:73260101-73260120 MS.gene54803:CDS 20.0%
! AATCACGATAAGTCAATAAA+AGG + chr1.2:73260180-73260199 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG + chr1.2:73260890-73260909 None:intergenic 25.0%
! ATCACGATAAGTCAATAAAA+GGG + chr1.2:73260179-73260198 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG + chr1.2:73261083-73261102 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG - chr1.2:73261825-73261844 MS.gene54803:intron 25.0%
! CTTCATCTATTATTCTTAAG+AGG + chr1.2:73261307-73261326 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG - chr1.2:73260634-73260653 MS.gene54803:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG + chr1.2:73260889-73260908 None:intergenic 25.0%
! TATTTATAGAAAGGGTAGTT+TGG - chr1.2:73260712-73260731 MS.gene54803:intron 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG + chr1.2:73261827-73261846 None:intergenic 25.0%
AAACAAAACATATGTGTGCA+TGG + chr1.2:73261158-73261177 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG + chr1.2:73261428-73261447 None:intergenic 30.0%
AAGAATAAGAACTTGTGCTT+TGG + chr1.2:73260985-73261004 None:intergenic 30.0%
ATAATGAACCTTCAAATTGG+TGG - chr1.2:73260899-73260918 MS.gene54803:intron 30.0%
ATGACTTCCAATTCAAGTAA+AGG + chr1.2:73260644-73260663 None:intergenic 30.0%
TGATCAATAAATCGCATCAT+TGG + chr1.2:73261222-73261241 None:intergenic 30.0%
TTGGTTTCTTGACAATAATC+CGG + chr1.2:73261786-73261805 None:intergenic 30.0%
TTTAGGAAACTTGATTGTGT+CGG - chr1.2:73260741-73260760 MS.gene54803:intron 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG + chr1.2:73260561-73260580 None:intergenic 30.0%
!!! TTCTTAAGAGGCTAGTTTTA+TGG + chr1.2:73261295-73261314 None:intergenic 30.0%
!!! TTGCATATTGCCACTTTTTT+AGG - chr1.2:73260464-73260483 MS.gene54803:intron 30.0%
AAACCATTCATGATGTTGCT+AGG + chr1.2:73260209-73260228 None:intergenic 35.0%
AAAGCTACAAACAGACAATC+AGG + chr1.2:73260052-73260071 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG + chr1.2:73260208-73260227 None:intergenic 35.0%
AAGATCTTCTTTCATTGGAG+TGG - chr1.2:73261398-73261417 MS.gene54803:intron 35.0%
AGATCTTCTTTCATTGGAGT+GGG - chr1.2:73261399-73261418 MS.gene54803:intron 35.0%
AGTGGCAATATGCAATTGAT+TGG + chr1.2:73260459-73260478 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG - chr1.2:73260025-73260044 MS.gene54803:CDS 35.0%
GTCATAATCAAGCAATCAGA+CGG + chr1.2:73260006-73260025 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG - chr1.2:73261393-73261412 MS.gene54803:intron 35.0%
TAGATTGACCACCAATTTGA+AGG + chr1.2:73260910-73260929 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG + chr1.2:73262089-73262108 None:intergenic 35.0%
TGGTTTCTTGACAATAATCC+GGG + chr1.2:73261785-73261804 None:intergenic 35.0%
TTAAGTAACTCTCTACTCAC+CGG + chr1.2:73259897-73259916 None:intergenic 35.0%
! AAACAAACATGGGTTGTTAC+TGG + chr1.2:73260934-73260953 None:intergenic 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG - chr1.2:73261764-73261783 MS.gene54803:intron 35.0%
!!! GGGTAGTTTGGTCATTTTTT+AGG - chr1.2:73260724-73260743 MS.gene54803:intron 35.0%
AAAACACTCTGCAATGCTTG+CGG - chr1.2:73261967-73261986 MS.gene54803:CDS 40.0%
AAGAAACCAAAGCTCTCTTC+TGG - chr1.2:73261796-73261815 MS.gene54803:intron 40.0%
AGAATGGTTCACTACCTGTT+AGG - chr1.2:73261884-73261903 MS.gene54803:intron 40.0%
AGATAACCAAGACTCCACAA+TGG - chr1.2:73261923-73261942 MS.gene54803:intron 40.0%
CAATAGTACTTCAGACCTCT+CGG - chr1.2:73259854-73259873 MS.gene54803:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG + chr1.2:73261901-73261920 None:intergenic 40.0%
CTGCTTTCAAGGACAGAAAT+AGG + chr1.2:73261547-73261566 None:intergenic 40.0%
TCAAGGACAGAAATAGGACT+TGG + chr1.2:73261541-73261560 None:intergenic 40.0%
TTCCCTAGCAACATCATGAA+TGG - chr1.2:73260203-73260222 MS.gene54803:CDS 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG + chr1.2:73262070-73262089 None:intergenic 40.0%
! TGTGGACGATTCATTTTGTG+AGG - chr1.2:73261432-73261451 MS.gene54803:intron 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG + chr1.2:73261967-73261986 None:intergenic 40.0%
AAAATCTGAAGACAGCGCCT+TGG + chr1.2:73261746-73261765 None:intergenic 45.0%
AAACTCCAATGTTCTCGCCT+TGG - chr1.2:73262140-73262159 MS.gene54803:CDS 45.0%
AACACCGAGTCAGACTCATT+TGG + chr1.2:73259828-73259847 None:intergenic 45.0%
AACCAAGACTCCACAATGGA+GGG - chr1.2:73261927-73261946 MS.gene54803:intron 45.0%
AACCACATAATCCGTGTGAC+AGG + chr1.2:73260086-73260105 None:intergenic 45.0%
AAGGCGAGAACATTGGAGTT+TGG + chr1.2:73262141-73262160 None:intergenic 45.0%
ACCCCTCAAATTGGAGAGTA+GGG + chr1.2:73260790-73260809 None:intergenic 45.0%
ACCCTACTCTCCAATTTGAG+GGG - chr1.2:73260786-73260805 MS.gene54803:intron 45.0%
ACTATTTCCAGCCTGTCACA+CGG - chr1.2:73260072-73260091 MS.gene54803:CDS 45.0%
AGTAGGGGAAATGAGTTGCA+TGG + chr1.2:73261680-73261699 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG - chr1.2:73261486-73261505 MS.gene54803:intron 45.0%
CACCCTACTCTCCAATTTGA+GGG - chr1.2:73260785-73260804 MS.gene54803:intron 45.0%
CATGTTCTCCTCAACAGAAG+AGG + chr1.2:73261704-73261723 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG + chr1.2:73261696-73261715 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG + chr1.2:73261695-73261714 None:intergenic 45.0%
GCACTCCAATTCGCACAAAA+AGG - chr1.2:73262062-73262081 MS.gene54803:CDS 45.0%
GCCTAATGTTATCTCCACCA+AGG - chr1.2:73261726-73261745 MS.gene54803:intron 45.0%
GCCTTGGTGGAGATAACATT+AGG + chr1.2:73261730-73261749 None:intergenic 45.0%
GGAGAGTCTCACAATGAAAG+TGG - chr1.2:73261453-73261472 MS.gene54803:intron 45.0%
GGTCCTTGAAATGAGATGCA+AGG - chr1.2:73262083-73262102 MS.gene54803:CDS 45.0%
GGTGCGCTGTCTCAATTATT+TGG - chr1.2:73260807-73260826 MS.gene54803:intron 45.0%
GTATTCCAAGGCGAGAACAT+TGG + chr1.2:73262148-73262167 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG - chr1.2:73261926-73261945 MS.gene54803:intron 45.0%
TCCTCAACAGAAGAGGAAGT+AGG + chr1.2:73261697-73261716 None:intergenic 45.0%
! GAGGTCTGAAGTACTATTGC+CGG + chr1.2:73259853-73259872 None:intergenic 45.0%
! TTGATTGTGTCGGTGACATG+TGG - chr1.2:73260751-73260770 MS.gene54803:intron 45.0%
! TTGCTGACAGCTGATGATGA+TGG + chr1.2:73261487-73261506 None:intergenic 45.0%
!!! TTATTTTTATTTTCTAAAAT+TGG - chr1.2:73260600-73260619 MS.gene54803:intron 5.0%
AACGAGGATTGAAGGCTGTG+GGG + chr1.2:73261654-73261673 None:intergenic 50.0%
ACAACTCGTTGGCGAGTATC+TGG - chr1.2:73259802-73259821 MS.gene54803:CDS 50.0%
ACATAATCCGTGTGACAGGC+TGG + chr1.2:73260082-73260101 None:intergenic 50.0%
AGAACGAGGATTGAAGGCTG+TGG + chr1.2:73261656-73261675 None:intergenic 50.0%
ATCATCAGCTGTCAGCAAGG+AGG - chr1.2:73261489-73261508 MS.gene54803:intron 50.0%
ATGAGTTGCATGGCAGAACG+AGG + chr1.2:73261670-73261689 None:intergenic 50.0%
CAACGAGTTGTAGTTTCCCG+CGG + chr1.2:73259793-73259812 None:intergenic 50.0%
CACCCCTCAAATTGGAGAGT+AGG + chr1.2:73260791-73260810 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG + chr1.2:73260041-73260060 None:intergenic 50.0%
CATGGCAGAACGAGGATTGA+AGG + chr1.2:73261662-73261681 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG - chr1.2:73260784-73260803 MS.gene54803:intron 50.0%
CCCTACTTCCTCTTCTGTTG+AGG - chr1.2:73261693-73261712 MS.gene54803:intron 50.0%
CCTCAAATTGGAGAGTAGGG+TGG + chr1.2:73260787-73260806 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG + chr1.2:73259889-73259908 None:intergenic 50.0%
CTGGCCAAATGAGTCTGACT+CGG - chr1.2:73259821-73259840 MS.gene54803:CDS 50.0%
GAACGAGGATTGAAGGCTGT+GGG + chr1.2:73261655-73261674 None:intergenic 50.0%
GCTCTGGTGGAAAAACCACA+GGG - chr1.2:73261575-73261594 MS.gene54803:intron 50.0%
GGAGTGGGTGTCCAATATTG+TGG - chr1.2:73261414-73261433 MS.gene54803:intron 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG + chr1.2:73261805-73261824 None:intergenic 50.0%
TAGTACTTCAGACCTCTCGG+CGG - chr1.2:73259857-73259876 MS.gene54803:CDS 50.0%
TCTCTACTCACCGGATCAAC+GGG + chr1.2:73259888-73259907 None:intergenic 50.0%
TGCACAGCTGGACAAAACGT+TGG + chr1.2:73262045-73262064 None:intergenic 50.0%
TGCTCTGGTGGAAAAACCAC+AGG - chr1.2:73261574-73261593 MS.gene54803:intron 50.0%
TTGCGGTGTACGCTACAAGT+CGG - chr1.2:73261984-73262003 MS.gene54803:CDS 50.0%
! AGCCTGTCACACGGATTATG+TGG - chr1.2:73260081-73260100 MS.gene54803:CDS 50.0%
! TGTGGTTTTTCCACCAGAGC+AGG + chr1.2:73261575-73261594 None:intergenic 50.0%
!! AGCAGGAACTGCTGCTTTCA+AGG + chr1.2:73261558-73261577 None:intergenic 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG + chr1.2:73262033-73262052 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG + chr1.2:73261958-73261977 None:intergenic 50.0%
!!! GAGTCTGACTCGGTGTTTTC+CGG - chr1.2:73259831-73259850 MS.gene54803:CDS 50.0%
AAGACTCCACAATGGAGGGC+AGG - chr1.2:73261931-73261950 MS.gene54803:intron 55.0%
AATGGAGGGCAGGTCCAATG+GGG - chr1.2:73261941-73261960 MS.gene54803:intron 55.0%
ACAATGGAGGGCAGGTCCAA+TGG - chr1.2:73261939-73261958 MS.gene54803:intron 55.0%
ACTAGCAGCAGGCCGGTATT+CGG + chr1.2:73262022-73262041 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG + chr1.2:73260799-73260818 None:intergenic 55.0%
ATCTGAAGACAGCGCCTTGG+TGG + chr1.2:73261743-73261762 None:intergenic 55.0%
ATTGGACCTGCCCTCCATTG+TGG + chr1.2:73261940-73261959 None:intergenic 55.0%
CAATGGAGGGCAGGTCCAAT+GGG - chr1.2:73261940-73261959 MS.gene54803:intron 55.0%
CGCGGGAAACTACAACTCGT+TGG - chr1.2:73259791-73259810 MS.gene54803:CDS 55.0%
CTCTACTCACCGGATCAACG+GGG + chr1.2:73259887-73259906 None:intergenic 55.0%
CTGTCAGCAAGGAGGACTCT+GGG - chr1.2:73261497-73261516 MS.gene54803:intron 55.0%
GAAAGCAGCAGTTCCTGCTC+TGG - chr1.2:73261559-73261578 MS.gene54803:intron 55.0%
GATGGGGACGTAAATCCCTG+TGG + chr1.2:73261593-73261612 None:intergenic 55.0%
GCCGGTATTCGGGGAAAAGT+CGG + chr1.2:73262011-73262030 None:intergenic 55.0%
GCTGACAGTGGCGAACAGAA+TGG - chr1.2:73261868-73261887 MS.gene54803:intron 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG + chr1.2:73261853-73261872 None:intergenic 55.0%
TGCCCTCCATTGTGGAGTCT+TGG + chr1.2:73261932-73261951 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG + chr1.2:73262057-73262076 None:intergenic 55.0%
TGCGGTGTACGCTACAAGTC+GGG - chr1.2:73261985-73262004 MS.gene54803:CDS 55.0%
TTCTGTTCGCCACTGTCAGC+TGG + chr1.2:73261868-73261887 None:intergenic 55.0%
TTGTAGTTTCCCGCGGAGGA+GGG + chr1.2:73259786-73259805 None:intergenic 55.0%
!! GCCGACTTTTCCCCGAATAC+CGG - chr1.2:73262007-73262026 MS.gene54803:CDS 55.0%
AGCAGCAGTTCCTGCTCTGG+TGG - chr1.2:73261562-73261581 MS.gene54803:intron 60.0%
CCACTGTCAGCTGGAGCAGT+AGG + chr1.2:73261859-73261878 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG - chr1.2:73261856-73261875 MS.gene54803:intron 60.0%
CGAGTTGTAGTTTCCCGCGG+AGG + chr1.2:73259790-73259809 None:intergenic 60.0%
CTAGCAGCAGGCCGGTATTC+GGG + chr1.2:73262021-73262040 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG - chr1.2:73261496-73261515 MS.gene54803:intron 60.0%
GTTGTAGTTTCCCGCGGAGG+AGG + chr1.2:73259787-73259806 None:intergenic 60.0%
TAGCAGCAGGCCGGTATTCG+GGG + chr1.2:73262020-73262039 None:intergenic 60.0%
! AGCGGTGTCAACGTCGTCGA+CGG + chr1.2:73259751-73259770 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG + chr1.2:73262029-73262048 None:intergenic 60.0%
CGCGGAGGAGGGCAATGAAG+CGG + chr1.2:73259775-73259794 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG - chr1.2:73259773-73259792 MS.gene54803:CDS 65.0%
GCTTCATTGCCCTCCTCCGC+GGG - chr1.2:73259774-73259793 MS.gene54803:CDS 65.0%
GGAGGGCAATGAAGCGGCAG+CGG + chr1.2:73259769-73259788 None:intergenic 65.0%
GGATTGAAGGCTGTGGGGCG+TGG + chr1.2:73261649-73261668 None:intergenic 65.0%
TTGGTGCGTGCACGTCCGCA+AGG + chr1.2:73261622-73261641 None:intergenic 65.0%
! CGGTGTCAACGTCGTCGACG+GGG + chr1.2:73259749-73259768 None:intergenic 65.0%
! GCGGTGTCAACGTCGTCGAC+GGG + chr1.2:73259750-73259769 None:intergenic 65.0%
ACGTCCGCAAGGCACGGGGA+TGG + chr1.2:73261611-73261630 None:intergenic 70.0%
CGTCCGCAAGGCACGGGGAT+GGG + chr1.2:73261610-73261629 None:intergenic 70.0%
CGTGCACGTCCGCAAGGCAC+GGG + chr1.2:73261616-73261635 None:intergenic 70.0%
GCGTGCACGTCCGCAAGGCA+CGG + chr1.2:73261617-73261636 None:intergenic 70.0%
GGCGGAGCTCCCCGTTGATC+CGG - chr1.2:73259875-73259894 MS.gene54803:CDS 70.0%
GTCCCCATCCCCGTGCCTTG+CGG - chr1.2:73261604-73261623 MS.gene54803:intron 70.0%
GTCCGCAAGGCACGGGGATG+GGG + chr1.2:73261609-73261628 None:intergenic 70.0%
GTGCACGTCCGCAAGGCACG+GGG + chr1.2:73261615-73261634 None:intergenic 70.0%
CAACGGGGAGCTCCGCCGAG+AGG + chr1.2:73259872-73259891 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG + chr1.2:73261641-73261660 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 73259684 73262176 73259684 ID=MS.gene54803
chr1.2 mRNA 73259684 73262176 73259684 ID=MS.gene54803.t1;Parent=MS.gene54803
chr1.2 exon 73261964 73262176 73261964 ID=MS.gene54803.t1.exon1;Parent=MS.gene54803.t1
chr1.2 CDS 73261964 73262176 73261964 ID=cds.MS.gene54803.t1;Parent=MS.gene54803.t1
chr1.2 exon 73259684 73260466 73259684 ID=MS.gene54803.t1.exon2;Parent=MS.gene54803.t1
chr1.2 CDS 73259684 73260466 73259684 ID=cds.MS.gene54803.t1;Parent=MS.gene54803.t1
Gene Sequence

>MS.gene54803

ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATCTACCCCGTCGACGACGTTGACACCGCTGCCGCTTCATTGCCCTCCTCCGCGGGAAACTACAACTCGTTGGCGAGTATCTGGCCAAATGAGTCTGACTCGGTGTTTTCCGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGGTGAGTAGAGAGTTACTTAAAGTATAATTTATTTTATTTTGTTGTTATTATTTCATAATAATAGTTTTGTCAGAAAAAAATTATTTCATAATAGGTTTGTTTGTAACCGTCTGATTGCTTGATTATGACATCATAATAGTTCCGTGTACGGACCTGATTGTCTGTTTGTAGCTTTACTATTTCCAGCCTGTCACACGGATTATGTGGTTTTTCTTTTTTGATAAAGGATTACGTGTTTTTTTCTAAATTCTTTTTTATTGACTCATTTTGATTTATTTTCCCTTTTATTGACTTATCGTGATTTTTTTCCCTAGCAACATCATGAATGGTTTACAGTTCAAAATTTAAAAAAAGAAAAGAAAAACAGTCCAAAAGATTTTACTAACTTATAATAAAGTTTTTTTTATCGAGGAAATTCATTTTCATGTTTTTTTCTTTGCCATATTATTTTTTTTTGTAGAGAATTTCAAAATTTTAAATACAATTCATGTCGAAAAATGATTTTTTTAAGGTTTAATTTATATACATTTGACAATTTAAATTATTTGCACGTTTGAATCCAATCAATTGCATATTGCCACTTTTTTAGGTTAATTTTTAAAATATCTTCTTAAATATCTATTTAATATAATTTACTTATATACACTTATAAAAAATCAAACCACTCTACTTGACCAAAAATAAATAAAGTAAAGTTAATATTTTATTTTTATTTTCTAAAATTGGTCCAAAAAGTAGAAAATTCCTTTACTTGAATTGGAAGTCATTATTATTAACTAATTGAGAACTTTTATAATATACTACTAAATATAAAGTATTTATAGAAAGGGTAGTTTGGTCATTTTTTAGGAAACTTGATTGTGTCGGTGACATGTGGCACATCACTTCCACCCTACTCTCCAATTTGAGGGGTGCGCTGTCTCAATTATTTGGATCATCATTATTGGATGTCATGTGCTTTTGCATGTGATTATCACGTGATGTGAGCACCCACCTAAATAAATAATGAACCTTCAAATTGGTGGTCAATCTAGCCAGTAACAACCCATGTTTGTTTTATTTTATTTTATTTTATTTAATTCATACCAAAGCACAAGTTCTTATTCTTCATTGAATTTGAAGAGTAATATACTTTTTTTTGGTTGTATATGCTCTACTAAACTGCATTCTTTGCTTGAACTGTCCACATGTGAATGACATTTTAATAAATGATTGTGTTTATACTTCAATATTAGTTATATGTAAAAACATGCTTGCACCATGCACACATATGTTTTGTTTTTCACCTTTGTATTAATAAGTATCATGATATCTCATTTGATCCAATGATGCGATTTATTGATCAAATTCTGAAAAATAACTTGTACATGATGCAAAACTTATCTCATTTGTGCACCATAAAACTAGCCTCTTAAGAATAATAGATGAAGATGTGAATTTAAGTTTTGTTCTTTTAATAAAATTGTGATTTTGATCAATCTTGTTATATTATTGCAGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCTGGTGGAAAAACCACAGGGATTTACGTCCCCATCCCCGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAATCCTCGTTCTGCCATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCCACCAAGGCGCTGTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCAGCTGACAGTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTACGCTACAAGTCGGGCCGACTTTTCCCCGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACTCCAATGTTCTCGCCTTGGAATACAACATTTGA
Protein sequence

>MS.gene54803.t1

MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAGNYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKALSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNSNVLALEYNI