AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54972

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54972.t1 MTR_7g083570 95.851 241 8 1 1 241 50 288 3.82e-174 480
MS.gene54972.t1 MTR_3g100750 47.475 198 94 3 39 227 59 255 2.21e-61 193
MS.gene54972.t1 MTR_8g069110 48.125 160 82 1 68 227 109 267 3.13e-53 173
MS.gene54972.t1 MTR_2g076350 41.176 204 107 3 40 230 25 228 1.84e-48 160
MS.gene54972.t1 MTR_6g077990 39.394 198 111 2 32 228 8 197 6.21e-46 152
MS.gene54972.t1 MTR_6g077990 43.293 164 93 0 65 228 33 196 2.16e-45 150
MS.gene54972.t1 MTR_1g033750 38.857 175 107 0 55 229 48 222 2.62e-45 151
MS.gene54972.t1 MTR_1g114640 38.547 179 110 0 49 227 40 218 6.21e-45 150
MS.gene54972.t1 MTR_6g077990 45.578 147 80 0 82 228 8 154 6.47e-44 145
MS.gene54972.t1 MTR_8g100065 41.975 162 93 1 68 228 22 183 1.06e-41 140
MS.gene54972.t1 MTR_8g100065 41.975 162 93 1 68 228 44 205 2.63e-41 140
MS.gene54972.t1 MTR_1g114750 35.758 165 106 0 65 229 56 220 1.43e-37 131
MS.gene54972.t1 MTR_1g114690 37.654 162 101 0 68 229 56 217 1.29e-35 126
MS.gene54972.t1 MTR_1g114690 36.196 163 104 0 67 229 55 217 4.27e-35 125
MS.gene54972.t1 MTR_1g115130 39.189 148 90 0 82 229 46 193 4.43e-34 122
MS.gene54972.t1 MTR_1g114680 50.926 108 53 0 122 229 55 162 6.95e-29 107
MS.gene54972.t1 MTR_1g114690 31.122 196 101 1 68 229 56 251 2.15e-28 108
MS.gene54972.t1 MTR_6g077990 41.071 112 66 0 65 176 33 144 1.48e-24 95.9
MS.gene54972.t1 MTR_1g114640 31.538 130 89 0 49 178 40 169 2.07e-24 95.9
MS.gene54972.t1 MTR_8g100065 38.739 111 67 1 65 174 19 129 6.89e-21 85.5
MS.gene54972.t1 MTR_8g100065 39.815 108 64 1 68 174 44 151 9.26e-21 85.9
MS.gene54972.t1 MTR_1g114690 32.456 114 77 0 67 180 55 168 9.54e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54972.t1 AT5G13200 61.905 231 77 2 1 230 43 263 5.10e-104 302
MS.gene54972.t1 AT5G13200 62.286 175 55 3 1 174 43 207 1.06e-73 223
MS.gene54972.t1 AT2G22475 44.670 197 98 3 41 227 96 291 1.42e-59 190
MS.gene54972.t1 AT1G28200 46.429 196 94 3 39 227 63 254 2.32e-59 188
MS.gene54972.t1 AT1G28200 46.429 196 94 3 39 227 63 254 2.32e-59 188
MS.gene54972.t1 AT5G23370 41.875 160 93 0 69 228 55 214 6.43e-44 147
MS.gene54972.t1 AT5G23360 41.615 161 94 0 69 229 47 207 2.49e-43 145
MS.gene54972.t1 AT5G08350 39.326 178 103 1 51 228 41 213 2.50e-43 146
MS.gene54972.t1 AT5G23350 41.615 161 94 0 69 229 55 215 7.31e-43 145
MS.gene54972.t1 AT4G40100 36.364 198 79 5 41 227 55 216 2.56e-38 133
MS.gene54972.t1 AT4G01600 34.906 212 129 3 25 227 13 224 2.72e-38 133
MS.gene54972.t1 AT2G22475 43.537 147 72 3 41 177 96 241 2.95e-38 134
MS.gene54972.t1 AT4G01600 33.816 207 133 3 25 227 13 219 2.47e-36 128
MS.gene54972.t1 AT4G01600 39.130 161 97 1 68 227 25 185 2.96e-36 127

Find 58 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCATATGTTTGATTCT+TGG 0.179773 7.2:+23770924 MS.gene54972:CDS
ACGATTGTGCCAGATGTTAT+TGG 0.273073 7.2:-23770969 None:intergenic
CTGTGATTTGCAGTTAAAAC+AGG 0.342749 7.2:+23771781 MS.gene54972:intron
TTCATTGTCTTCAGCTGCAA+TGG 0.365963 7.2:+23771807 MS.gene54972:CDS
TGTTACCTTTCAACAACAAC+AGG 0.385011 7.2:+23771937 MS.gene54972:CDS
TTGTTGTCTGGATGACTACT+TGG 0.395182 7.2:-23770767 None:intergenic
CACCCTCCGGCCAAGTGACT+TGG 0.405041 7.2:+23772034 MS.gene54972:CDS
TCATTGTCTTCAGCTGCAAT+GGG 0.409086 7.2:+23771808 MS.gene54972:CDS
GCCCGTCAACTGTCACAATC+TGG 0.413594 7.2:-23772894 None:intergenic
ACAACAACAGGGCCTGTTGC+AGG 0.417937 7.2:+23771949 MS.gene54972:CDS
AAGTAAAGGGTTCCTGCAAC+AGG 0.429659 7.2:-23771961 None:intergenic
ACTGTTCCAATCTTTGCTAA+AGG 0.430324 7.2:-23772829 None:intergenic
ATGAATATCTGATAAGTAAA+GGG 0.435046 7.2:-23771974 None:intergenic
ATGGTGCCTTTAGCAAAGAT+TGG 0.438465 7.2:+23772823 MS.gene54972:CDS
TTACAAACTGCTTCTGCTGA+TGG 0.483740 7.2:+23770800 MS.gene54972:CDS
GATGAATATCTGATAAGTAA+AGG 0.486525 7.2:-23771975 None:intergenic
GTCGTTGGTACGGCTACGCC+GGG 0.491352 7.2:-23772997 None:intergenic
GCACGTATGGATGATCTTGC+TGG 0.491754 7.2:-23770856 None:intergenic
ATCCAGATTGTGACAGTTGA+CGG 0.497932 7.2:+23772892 MS.gene54972:CDS
TAAGCCTAGCAGTAGTCCTA+TGG 0.515052 7.2:+23770895 MS.gene54972:CDS
AAGCTACCGCCAATAACATC+TGG 0.518887 7.2:+23770960 MS.gene54972:CDS
GGATGACTACTTGGTACAGC+TGG 0.522699 7.2:-23770758 None:intergenic
CTCCAAGTCACTTGGCCGGA+GGG 0.523356 7.2:-23772036 None:intergenic
CTACTGCTAGGCTTATCAAC+AGG 0.523543 7.2:-23770887 None:intergenic
TGATTCTCCCTCATGATCAC+AGG 0.530214 7.2:-23772856 None:intergenic
TCCAGATTGTGACAGTTGAC+GGG 0.531799 7.2:+23772893 MS.gene54972:CDS
TTGAGTTTCACTGCACCCTC+CGG 0.532381 7.2:+23772021 MS.gene54972:CDS
ACAGGACTGTGTTGCACGTA+TGG 0.537458 7.2:-23770869 None:intergenic
GAGGGTGCAGTGAAACTCAA+AGG 0.539333 7.2:-23772018 None:intergenic
CAGGCCCTGTTGTTGTTGAA+AGG 0.548045 7.2:-23771942 None:intergenic
CAGTTAATCCTGTGATCATG+AGG 0.557822 7.2:+23772848 MS.gene54972:CDS
ATTGCAGCTGAAGACAATGA+AGG 0.560885 7.2:-23771805 None:intergenic
ACAAGGACAACCTCAGCCTC+AGG 0.564940 7.2:+23770823 MS.gene54972:CDS
AGGGTGCAGTGAAACTCAAA+GGG 0.565964 7.2:-23772017 None:intergenic
TTGAAGAACTAGTTAGTCGT+TGG 0.566224 7.2:-23773012 None:intergenic
AGTCGTTGGTACGGCTACGC+CGG 0.571636 7.2:-23772998 None:intergenic
GTAGCTCCAAGTCACTTGGC+CGG 0.578164 7.2:-23772040 None:intergenic
GAACTAGTTAGTCGTTGGTA+CGG 0.588752 7.2:-23773007 None:intergenic
TGTAGTAGCTCCAAGTCACT+TGG 0.593028 7.2:-23772044 None:intergenic
ACTGCTTCTGCTGATGGACA+AGG 0.594269 7.2:+23770806 MS.gene54972:CDS
ATTGTGCCAGATGTTATTGG+CGG 0.596019 7.2:-23770966 None:intergenic
GCTCCAAGTCACTTGGCCGG+AGG 0.599038 7.2:-23772037 None:intergenic
ATATGAAGAATTGATTCCAT+AGG 0.605924 7.2:-23770911 None:intergenic
TAGTAATGAACCTGAGGCTG+AGG 0.610263 7.2:-23770833 None:intergenic
GATTCCATAGGACTACTGCT+AGG 0.615191 7.2:-23770899 None:intergenic
TAAAGCAGTAAAGAACCTAT+CGG 0.619248 7.2:+23772951 MS.gene54972:CDS
AACTGGGGAACACATATGAT+GGG 0.620571 7.2:+23770731 None:intergenic
GCAGTAAAGAACCTATCGGA+AGG 0.626352 7.2:+23772955 MS.gene54972:CDS
AGTGACTTGGAGCTACTACA+AGG 0.629250 7.2:+23772047 MS.gene54972:CDS
GACTGTAAAAGCGATATCAG+AGG 0.638142 7.2:+23771843 MS.gene54972:CDS
AATGTGAGATGCCTTCCGAT+AGG 0.639873 7.2:-23772966 None:intergenic
ACTGTAAAAGCGATATCAGA+GGG 0.644668 7.2:+23771844 MS.gene54972:CDS
TGCTGGTAGTAATGAACCTG+AGG 0.645046 7.2:-23770839 None:intergenic
GTTACCTTTCAACAACAACA+GGG 0.667635 7.2:+23771938 MS.gene54972:CDS
AGTTAATCCTGTGATCATGA+GGG 0.672652 7.2:+23772849 MS.gene54972:CDS
TGTGATTTGCAGTTAAAACA+GGG 0.680349 7.2:+23771782 MS.gene54972:intron
CATTGTCTTCAGCTGCAATG+GGG 0.684360 7.2:+23771809 MS.gene54972:CDS
GTAAAAGCGATATCAGAGGG+TGG 0.696098 7.2:+23771847 MS.gene54972:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATATGAAAATAGTTT+TGG - chr7.2:23771492-23771511 None:intergenic 10.0%
!!! TAATTTAATTGAATTTTATG+AGG + chr7.2:23771194-23771213 MS.gene54972:intron 10.0%
!!! TGTATTTATGTTTTATATTA+TGG - chr7.2:23772689-23772708 None:intergenic 10.0%
!! CTGTTCATAAATATAATAAA+CGG - chr7.2:23772077-23772096 None:intergenic 15.0%
!!! AATTTTTATTAAAATTGTGG+TGG - chr7.2:23771657-23771676 None:intergenic 15.0%
!!! ATTTCAATTTTCATAGTTTA+AGG - chr7.2:23772751-23772770 None:intergenic 15.0%
!!! TTTCATATTTTATACTAAGT+TGG + chr7.2:23771499-23771518 MS.gene54972:intron 15.0%
!! AAAATTTCTATTACACCTTT+CGG + chr7.2:23772718-23772737 MS.gene54972:intron 20.0%
!! ATCAATCTATCTAAATATAG+AGG - chr7.2:23771017-23771036 None:intergenic 20.0%
!! ATGAATATCTGATAAGTAAA+GGG - chr7.2:23771977-23771996 None:intergenic 20.0%
!! ATTGAAATGAATGTTTGATA+TGG + chr7.2:23772763-23772782 MS.gene54972:intron 20.0%
!! CATAAACACTTATTAGTATA+AGG - chr7.2:23771273-23771292 None:intergenic 20.0%
!! TTATATTGTTTAATAGGTGA+TGG + chr7.2:23772804-23772823 MS.gene54972:intron 20.0%
!!! ATATATCTATGAGAGTTTTT+GGG + chr7.2:23771571-23771590 MS.gene54972:intron 20.0%
!!! GACTTGTTATATTGTTTAAT+AGG + chr7.2:23772798-23772817 MS.gene54972:intron 20.0%
!!! TATATATCTATGAGAGTTTT+TGG + chr7.2:23771570-23771589 MS.gene54972:intron 20.0%
! ACTCTCATAGATATATAGTA+AGG - chr7.2:23771567-23771586 None:intergenic 25.0%
! GATGAATATCTGATAAGTAA+AGG - chr7.2:23771978-23771997 None:intergenic 25.0%
! TAATCCACTCAAGTAATTTA+CGG - chr7.2:23772531-23772550 None:intergenic 25.0%
! TTCTTCATATGTTTGATTCT+TGG + chr7.2:23770924-23770943 MS.gene54972:CDS 25.0%
!! AATTAAGTTTGTTTCCAGAT+AGG + chr7.2:23771305-23771324 MS.gene54972:intron 25.0%
!! ATATGAAGAATTGATTCCAT+AGG - chr7.2:23770914-23770933 None:intergenic 25.0%
!! TCATTTTCTAACTTCAAAAC+TGG + chr7.2:23772370-23772389 MS.gene54972:intron 25.0%
!! TTTTATGCTATCAATATTGC+TGG - chr7.2:23772420-23772439 None:intergenic 25.0%
!!! CTATTGAACAAATTTTGACA+AGG - chr7.2:23772101-23772120 None:intergenic 25.0%
!!! TAAATTACTTGAGTGGATTA+GGG + chr7.2:23772531-23772550 MS.gene54972:intron 25.0%
AAAATGAACACATGAGAGAA+CGG - chr7.2:23772357-23772376 None:intergenic 30.0%
ACGTCATATATGTAGTACTA+CGG + chr7.2:23772567-23772586 MS.gene54972:intron 30.0%
AGATATATAGTAAGGAGCTT+AGG - chr7.2:23771559-23771578 None:intergenic 30.0%
TAAAGCAGTAAAGAACCTAT+CGG + chr7.2:23772951-23772970 MS.gene54972:CDS 30.0%
TAGTCTAGCATCTCATAATT+TGG + chr7.2:23771335-23771354 MS.gene54972:intron 30.0%
TCACATATTGACACAAAAGA+GGG - chr7.2:23772648-23772667 None:intergenic 30.0%
TTATGAGATGCTAGACTATT+AGG - chr7.2:23771333-23771352 None:intergenic 30.0%
! CAAAGTTCTGATAATATCCA+CGG - chr7.2:23771623-23771642 None:intergenic 30.0%
! GTAAATTACTTGAGTGGATT+AGG + chr7.2:23772530-23772549 MS.gene54972:intron 30.0%
! TGTGATTTGCAGTTAAAACA+GGG + chr7.2:23771782-23771801 MS.gene54972:intron 30.0%
! TTGTTCAATAGAGCATTAGA+GGG + chr7.2:23772110-23772129 MS.gene54972:intron 30.0%
! TTTGTTCAATAGAGCATTAG+AGG + chr7.2:23772109-23772128 MS.gene54972:intron 30.0%
!! TACAATAGTCAATTTGCTGT+TGG + chr7.2:23772299-23772318 MS.gene54972:intron 30.0%
!! TATATCGAGCATTGATAAGT+AGG + chr7.2:23772158-23772177 MS.gene54972:intron 30.0%
AAATGAACACATGAGAGAAC+GGG - chr7.2:23772356-23772375 None:intergenic 35.0%
AAGCTGGTATTGTTGTAATC+TGG - chr7.2:23772594-23772613 None:intergenic 35.0%
ACTGTAAAAGCGATATCAGA+GGG + chr7.2:23771844-23771863 MS.gene54972:CDS 35.0%
ACTGTTCCAATCTTTGCTAA+AGG - chr7.2:23772832-23772851 None:intergenic 35.0%
AGTTAATCCTGTGATCATGA+GGG + chr7.2:23772849-23772868 MS.gene54972:CDS 35.0%
AGTTCCGTAAATTACTTGAG+TGG + chr7.2:23772524-23772543 MS.gene54972:intron 35.0%
CTCACATATTGACACAAAAG+AGG - chr7.2:23772649-23772668 None:intergenic 35.0%
CTTACTTTCATAACCTCTCT+AGG + chr7.2:23771154-23771173 MS.gene54972:intron 35.0%
GATCGTTTGTTTACGCAATT+CGG + chr7.2:23772464-23772483 MS.gene54972:intron 35.0%
GTTACCTTTCAACAACAACA+GGG + chr7.2:23771938-23771957 MS.gene54972:CDS 35.0%
TAGACATAATTGGCCGAATT+CGG + chr7.2:23772322-23772341 MS.gene54972:intron 35.0%
TAGACTATTAGGTTCCTATC+TGG - chr7.2:23771322-23771341 None:intergenic 35.0%
TGTTACCTTTCAACAACAAC+AGG + chr7.2:23771937-23771956 MS.gene54972:CDS 35.0%
TTGCATAAGTTATCCTAGAG+AGG - chr7.2:23771170-23771189 None:intergenic 35.0%
TTGCCTAACATACACATGAA+GGG + chr7.2:23771718-23771737 MS.gene54972:intron 35.0%
TTTGCCTAACATACACATGA+AGG + chr7.2:23771717-23771736 MS.gene54972:intron 35.0%
! AATCCTTCTAGAAGTAAGGA+GGG - chr7.2:23771060-23771079 None:intergenic 35.0%
! AGTCAATCCTTCTAGAAGTA+AGG - chr7.2:23771064-23771083 None:intergenic 35.0%
! CTGTGATTTGCAGTTAAAAC+AGG + chr7.2:23771781-23771800 MS.gene54972:intron 35.0%
! TTGCTGTTGGTAGACATAAT+TGG + chr7.2:23772312-23772331 MS.gene54972:intron 35.0%
!!! AAAGCTGCTTTTTTGTTGTC+TGG - chr7.2:23770782-23770801 None:intergenic 35.0%
!!! GTCTTTTTCAGCTTCTCATT+TGG - chr7.2:23771910-23771929 None:intergenic 35.0%
ACGATTGTGCCAGATGTTAT+TGG - chr7.2:23770972-23770991 None:intergenic 40.0%
ACGGGAATAATCACCGAATT+CGG - chr7.2:23772338-23772357 None:intergenic 40.0%
ATAAGTAGGTAGACACCTGA+GGG + chr7.2:23772172-23772191 MS.gene54972:intron 40.0%
ATCCAGATTGTGACAGTTGA+CGG + chr7.2:23772892-23772911 MS.gene54972:CDS 40.0%
ATGGTGCCTTTAGCAAAGAT+TGG + chr7.2:23772823-23772842 MS.gene54972:CDS 40.0%
ATTGACACAAAAGAGGGACA+AGG - chr7.2:23772642-23772661 None:intergenic 40.0%
ATTGCAGCTGAAGACAATGA+AGG - chr7.2:23771808-23771827 None:intergenic 40.0%
ATTGTGCCAGATGTTATTGG+CGG - chr7.2:23770969-23770988 None:intergenic 40.0%
CAGTTAATCCTGTGATCATG+AGG + chr7.2:23772848-23772867 MS.gene54972:CDS 40.0%
GACTGTAAAAGCGATATCAG+AGG + chr7.2:23771843-23771862 MS.gene54972:CDS 40.0%
TAACCCTCCTTACTTCTAGA+AGG + chr7.2:23771054-23771073 MS.gene54972:intron 40.0%
TCATTGTCTTCAGCTGCAAT+GGG + chr7.2:23771808-23771827 MS.gene54972:CDS 40.0%
TGTTCCATTATACTACCCTC+AGG - chr7.2:23772190-23772209 None:intergenic 40.0%
TTACAAACTGCTTCTGCTGA+TGG + chr7.2:23770800-23770819 MS.gene54972:CDS 40.0%
TTCATTGTCTTCAGCTGCAA+TGG + chr7.2:23771807-23771826 MS.gene54972:CDS 40.0%
TTGACACAAAAGAGGGACAA+GGG - chr7.2:23772641-23772660 None:intergenic 40.0%
TTGTTGTCTGGATGACTACT+TGG - chr7.2:23770770-23770789 None:intergenic 40.0%
! AGTTCTGATAATATCCACGG+TGG - chr7.2:23771620-23771639 None:intergenic 40.0%
! CAATCCTTCTAGAAGTAAGG+AGG - chr7.2:23771061-23771080 None:intergenic 40.0%
! GGGTAGTATAATGGAACAAG+TGG + chr7.2:23772192-23772211 MS.gene54972:intron 40.0%
! GTTTAAGGCTCTTTACCGAA+AGG - chr7.2:23772736-23772755 None:intergenic 40.0%
!!! GGGCATGATTTTTGGTTCAT+GGG + chr7.2:23772913-23772932 MS.gene54972:CDS 40.0%
AAGCTACCGCCAATAACATC+TGG + chr7.2:23770960-23770979 MS.gene54972:CDS 45.0%
AAGTAAAGGGTTCCTGCAAC+AGG - chr7.2:23771964-23771983 None:intergenic 45.0%
AATGTGAGATGCCTTCCGAT+AGG - chr7.2:23772969-23772988 None:intergenic 45.0%
AGGGTGCAGTGAAACTCAAA+GGG - chr7.2:23772020-23772039 None:intergenic 45.0%
CATTGTCTTCAGCTGCAATG+GGG + chr7.2:23771809-23771828 MS.gene54972:CDS 45.0%
CCTAACATACACATGAAGGG+CGG + chr7.2:23771721-23771740 MS.gene54972:intron 45.0%
CTACTGCTAGGCTTATCAAC+AGG - chr7.2:23770890-23770909 None:intergenic 45.0%
GACACCTGAGGGTAGTATAA+TGG + chr7.2:23772183-23772202 MS.gene54972:intron 45.0%
GATAAGTAGGTAGACACCTG+AGG + chr7.2:23772171-23772190 MS.gene54972:intron 45.0%
GATTCCATAGGACTACTGCT+AGG - chr7.2:23770902-23770921 None:intergenic 45.0%
GCAGTAAAGAACCTATCGGA+AGG + chr7.2:23772955-23772974 MS.gene54972:CDS 45.0%
GTAAAAGCGATATCAGAGGG+TGG + chr7.2:23771847-23771866 MS.gene54972:CDS 45.0%
GTCGCAAAGGTAGACACAAT+TGG - chr7.2:23772490-23772509 None:intergenic 45.0%
GTGGATCGAAACATGCTCTA+AGG - chr7.2:23771601-23771620 None:intergenic 45.0%
TAAGCCTAGCAGTAGTCCTA+TGG + chr7.2:23770895-23770914 MS.gene54972:CDS 45.0%
TAGCTGCTCTATAGTCGCAA+AGG - chr7.2:23772503-23772522 None:intergenic 45.0%
TAGTAATGAACCTGAGGCTG+AGG - chr7.2:23770836-23770855 None:intergenic 45.0%
TCCAGATTGTGACAGTTGAC+GGG + chr7.2:23772893-23772912 MS.gene54972:CDS 45.0%
TGACACAAAAGAGGGACAAG+GGG - chr7.2:23772640-23772659 None:intergenic 45.0%
TGATTCTCCCTCATGATCAC+AGG - chr7.2:23772859-23772878 None:intergenic 45.0%
TGCTGGTAGTAATGAACCTG+AGG - chr7.2:23770842-23770861 None:intergenic 45.0%
TGTAGTAGCTCCAAGTCACT+TGG - chr7.2:23772047-23772066 None:intergenic 45.0%
! AGTGACTTGGAGCTACTACA+AGG + chr7.2:23772047-23772066 MS.gene54972:CDS 45.0%
! ATCTCACATTTTGTTGCGCC+CGG + chr7.2:23772979-23772998 MS.gene54972:CDS 45.0%
!! CAGTTGACGGGCATGATTTT+TGG + chr7.2:23772905-23772924 MS.gene54972:CDS 45.0%
!!! CGGGCATGATTTTTGGTTCA+TGG + chr7.2:23772912-23772931 MS.gene54972:CDS 45.0%
!!! TATAATTTTTATTAAAATTG+TGG - chr7.2:23771660-23771679 None:intergenic 5.0%
ACAGGACTGTGTTGCACGTA+TGG - chr7.2:23770872-23770891 None:intergenic 50.0%
CCGCCCTTCATGTGTATGTT+AGG - chr7.2:23771724-23771743 None:intergenic 50.0%
GCACGTATGGATGATCTTGC+TGG - chr7.2:23770859-23770878 None:intergenic 50.0%
GGATGACTACTTGGTACAGC+TGG - chr7.2:23770761-23770780 None:intergenic 50.0%
TTGAGTTTCACTGCACCCTC+CGG + chr7.2:23772021-23772040 MS.gene54972:CDS 50.0%
! ACTGCTTCTGCTGATGGACA+AGG + chr7.2:23770806-23770825 MS.gene54972:CDS 50.0%
! CAGGCCCTGTTGTTGTTGAA+AGG - chr7.2:23771945-23771964 None:intergenic 50.0%
! GAGGGTGCAGTGAAACTCAA+AGG - chr7.2:23772021-23772040 None:intergenic 50.0%
ACAACAACAGGGCCTGTTGC+AGG + chr7.2:23771949-23771968 MS.gene54972:CDS 55.0%
ACAAGGACAACCTCAGCCTC+AGG + chr7.2:23770823-23770842 MS.gene54972:CDS 55.0%
CACAAAAGAGGGACAAGGGG+TGG - chr7.2:23772637-23772656 None:intergenic 55.0%
CTAGCATAGCGTAGCGAAGC+TGG - chr7.2:23772610-23772629 None:intergenic 55.0%
GAGCATGTTTCGATCCACCG+TGG + chr7.2:23771603-23771622 MS.gene54972:intron 55.0%
GCCCGTCAACTGTCACAATC+TGG - chr7.2:23772897-23772916 None:intergenic 55.0%
GTAGCTCCAAGTCACTTGGC+CGG - chr7.2:23772043-23772062 None:intergenic 55.0%
AGTCGTTGGTACGGCTACGC+CGG - chr7.2:23773001-23773020 None:intergenic 60.0%
CTCCAAGTCACTTGGCCGGA+GGG - chr7.2:23772039-23772058 None:intergenic 60.0%
CACCCTCCGGCCAAGTGACT+TGG + chr7.2:23772034-23772053 MS.gene54972:CDS 65.0%
GCTCCAAGTCACTTGGCCGG+AGG - chr7.2:23772040-23772059 None:intergenic 65.0%
GTCGTTGGTACGGCTACGCC+GGG - chr7.2:23773000-23773019 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 23770746 23773026 23770746 ID=MS.gene54972
chr7.2 mRNA 23770746 23773026 23770746 ID=MS.gene54972.t1;Parent=MS.gene54972
chr7.2 exon 23770746 23770989 23770746 ID=MS.gene54972.t1.exon1;Parent=MS.gene54972.t1
chr7.2 CDS 23770746 23770989 23770746 ID=cds.MS.gene54972.t1;Parent=MS.gene54972.t1
chr7.2 exon 23771794 23772068 23771794 ID=MS.gene54972.t1.exon2;Parent=MS.gene54972.t1
chr7.2 CDS 23771794 23772068 23771794 ID=cds.MS.gene54972.t1;Parent=MS.gene54972.t1
chr7.2 exon 23772820 23773026 23772820 ID=MS.gene54972.t1.exon3;Parent=MS.gene54972.t1
chr7.2 CDS 23772820 23773026 23772820 ID=cds.MS.gene54972.t1;Parent=MS.gene54972.t1
Gene Sequence

>MS.gene54972

ATGATGGGAGCACCAGCTGTACCAAGTAGTCATCCAGACAACAAAAAAGCAGCTTTACAAACTGCTTCTGCTGATGGACAAGGACAACCTCAGCCTCAGGTTCATTACTACCAGCAAGATCATCCATACGTGCAACACAGTCCTGTTGATAAGCCTAGCAGTAGTCCTATGGAATCAATTCTTCATATGTTTGATTCTTGGAGTAAAAAAGCTGAAGCTACCGCCAATAACATCTGGCACAATCGTGAGTGACTAATTTTTATTCATTCCTCTATATTTAGATAGATTGATAGACTGATTTTAATTAATAACCCTCCTTACTTCTAGAAGGATTGACTTATTTGATCTTTTCTACTCACAGAAGCACTTGTGAGATCGTTTGTGATATTTTATGAAAATTGTTTTCAGCTTACTTTCATAACCTCTCTAGGATAACTTATGCAAAAAATAATTTAATTGAATTTTATGAGGATAACTTATGCAAAAAACAATTTAATTGAATTTTATGTTTTGTTATAGAAATACCTTATACTAATAAGTGTTTATGCTATAAGCTGCAAATTAAGTTTGTTTCCAGATAGGAACCTAATAGTCTAGCATCTCATAATTTGGTATTGAAATTAATAATTATAAAATAGTATTTGAAATTAAAAATTGTCAATATATTAAGTTAGTTTTTTGCGTGAGTCAATTTAATATTGAAATTATCATCTAGAACTAAGATCTACTAGTATTTTCAGTTTCCAAAACTATTTTCATATTTTATACTAAGTTGGTAAATTATTTCACTTCAGTCATTAAATTGTATATCCTAAGCTCCTTACTATATATCTATGAGAGTTTTTGGGTAAGCCTTAGAGCATGTTTCGATCCACCGTGGATATTATCAGAACTTTGATGTCATTGAGCCACCACAATTTTAATAAAAATTATAGTTTCGAGCTTCAACAAAATTATAGTGTCAATGTGATTTTGCCTAACATACACATGAAGGGCGGCTAAATCTTCGATTTTTATATGATGTTTTTGTTACTACTGTGATTTGCAGTTAAAACAGGGCCTTCATTGTCTTCAGCTGCAATGGGGAAGATGAATCTGACTGTAAAAGCGATATCAGAGGGTGGATTTGAGTCACTTTACAAACAAATATTCACTACTTATCCAAATGAGAAGCTGAAAAAGACATTTGCTTGTTACCTTTCAACAACAACAGGGCCTGTTGCAGGAACCCTTTACTTATCAGATATTCATCTAGCATTTTGCAGTGATCGCCCTTTGAGTTTCACTGCACCCTCCGGCCAAGTGACTTGGAGCTACTACAAGGTACTCCGTTTATTATATTTATGAACAGTCCTTGTCAAAATTTGTTCAATAGAGCATTAGAGGGATAACTATATAGAGTTTAATGATTATATATCGAGCATTGATAAGTAGGTAGACACCTGAGGGTAGTATAATGGAACAAGTGGAGCTGAAAGTGTAACGACTAACGAGCATAGTATTATTACAGAGTTTTGTACTTTGTAACTCTAGTTCAATGCATAATAGTAAAGTACAATAGTCAATTTGCTGTTGGTAGACATAATTGGCCGAATTCGGTGATTATTCCCGTTCTCTCATGTGTTCATTTTCTAACTTCAAAACTGGATTTGCTATTTTAGAAGTATCTTACCAGCAATATTGATAGCATAAAATGTAAATTGCAAGCAATGAAACACGATCGTTTGTTTACGCAATTCGGCCAATTGTGTCTACCTTTGCGACTATAGAGCAGCTATAGTTCCGTAAATTACTTGAGTGGATTAGGGTTTACAGTGTTACACGTCATATATGTAGTACTACGGTCCAGATTACAACAATACCAGCTTCGCTACGCTATGCTAGCTCACCACCCCTTGTCCCTCTTTTGTGTCAATATGTGAGTCATACTCAACAAATAGCCATAATATAAAACATAAATACATGATTCTGTAAAATTTCTATTACACCTTTCGGTAAAGAGCCTTAAACTATGAAAATTGAAATGAATGTTTGATATGGTGTATGAAATTTGACTTGTTATATTGTTTAATAGGTGATGGTGCCTTTAGCAAAGATTGGAACAGTTAATCCTGTGATCATGAGGGAGAATCAATCAGAGAAGTATATCCAGATTGTGACAGTTGACGGGCATGATTTTTGGTTCATGGGTTTTGTTAATTATGATAAAGCAGTAAAGAACCTATCGGAAGGCATCTCACATTTTGTTGCGCCCGGCGTAGCCGTACCAACGACTAACTAG
Protein sequence

>MS.gene54972.t1

MMGAPAVPSSHPDNKKAALQTASADGQGQPQPQVHYYQQDHPYVQHSPVDKPSSSPMESILHMFDSWSKKAEATANNIWHNLKTGPSLSSAAMGKMNLTVKAISEGGFESLYKQIFTTYPNEKLKKTFACYLSTTTGPVAGTLYLSDIHLAFCSDRPLSFTAPSGQVTWSYYKVMVPLAKIGTVNPVIMRENQSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSEGISHFVAPGVAVPTTN