Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55035.t1 | XP_003624375.3 | 87.7 | 253 | 31 | 0 | 1 | 253 | 872 | 1124 | 3.30E-130 | 474.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55035.t1 | F4HQ23 | 32.9 | 277 | 155 | 10 | 1 | 269 | 4 | 257 | 1.2e-29 | 131.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55035.t1 | G7KV63 | 87.7 | 253 | 31 | 0 | 1 | 253 | 1 | 253 | 2.3e-130 | 474.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene047363 | MS.gene55035 | PPI |
MS.gene002507 | MS.gene55035 | PPI |
MS.gene55035 | MS.gene004177 | PPI |
MS.gene01481 | MS.gene55035 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55035.t1 | MTR_7g082540 | 87.109 | 256 | 33 | 0 | 1 | 256 | 1 | 256 | 1.74e-164 | 456 |
MS.gene55035.t1 | MTR_7g082390 | 85.772 | 246 | 33 | 1 | 7 | 252 | 10 | 253 | 1.13e-153 | 429 |
MS.gene55035.t1 | MTR_7g082533 | 34.703 | 219 | 128 | 4 | 32 | 235 | 36 | 254 | 4.56e-40 | 141 |
MS.gene55035.t1 | MTR_7g082537 | 30.159 | 252 | 150 | 11 | 2 | 237 | 7 | 248 | 4.68e-28 | 108 |
MS.gene55035.t1 | MTR_8g104520 | 31.641 | 256 | 157 | 8 | 1 | 242 | 1 | 252 | 5.63e-26 | 107 |
MS.gene55035.t1 | MTR_7g082530 | 33.333 | 237 | 142 | 9 | 16 | 240 | 21 | 253 | 6.37e-26 | 107 |
MS.gene55035.t1 | MTR_7g082530 | 33.333 | 237 | 142 | 9 | 16 | 240 | 21 | 253 | 6.84e-26 | 107 |
MS.gene55035.t1 | MTR_7g082460 | 31.120 | 241 | 137 | 10 | 14 | 235 | 21 | 251 | 7.40e-24 | 101 |
MS.gene55035.t1 | MTR_6g082940 | 27.969 | 261 | 162 | 10 | 1 | 238 | 1 | 258 | 6.21e-23 | 96.7 |
MS.gene55035.t1 | MTR_6g082920 | 27.969 | 261 | 162 | 10 | 1 | 238 | 1 | 258 | 6.21e-23 | 96.7 |
MS.gene55035.t1 | MTR_6g082820 | 27.016 | 248 | 160 | 7 | 10 | 238 | 13 | 258 | 1.39e-21 | 92.4 |
MS.gene55035.t1 | MTR_6g083000 | 26.515 | 264 | 169 | 8 | 1 | 241 | 1 | 262 | 2.83e-21 | 92.0 |
MS.gene55035.t1 | MTR_7g082470 | 27.706 | 231 | 137 | 9 | 16 | 223 | 1 | 224 | 6.16e-20 | 89.7 |
MS.gene55035.t1 | MTR_1g115485 | 27.941 | 272 | 163 | 9 | 13 | 253 | 4 | 273 | 5.54e-18 | 84.0 |
MS.gene55035.t1 | MTR_6g083010 | 29.545 | 264 | 149 | 14 | 4 | 242 | 17 | 268 | 1.57e-17 | 80.9 |
MS.gene55035.t1 | MTR_6g082980 | 28.054 | 221 | 141 | 6 | 1 | 205 | 5 | 223 | 5.63e-17 | 79.0 |
MS.gene55035.t1 | MTR_7g082430 | 28.141 | 199 | 102 | 6 | 32 | 223 | 41 | 205 | 8.79e-17 | 80.5 |
MS.gene55035.t1 | MTR_6g083760 | 27.805 | 205 | 133 | 9 | 33 | 231 | 41 | 236 | 3.12e-16 | 79.0 |
MS.gene55035.t1 | MTR_7g082510 | 27.500 | 240 | 135 | 11 | 14 | 237 | 21 | 237 | 1.12e-15 | 77.0 |
MS.gene55035.t1 | MTR_7g082500 | 35.043 | 117 | 66 | 4 | 31 | 137 | 10 | 126 | 8.62e-15 | 70.5 |
MS.gene55035.t1 | MTR_6g044830 | 28.856 | 201 | 126 | 8 | 36 | 222 | 4 | 201 | 8.62e-15 | 74.7 |
MS.gene55035.t1 | MTR_6g083780 | 26.840 | 231 | 149 | 7 | 36 | 255 | 52 | 273 | 1.80e-14 | 73.6 |
MS.gene55035.t1 | MTR_6g082990 | 27.700 | 213 | 134 | 8 | 38 | 236 | 35 | 241 | 4.84e-14 | 70.9 |
MS.gene55035.t1 | MTR_6g082870 | 28.378 | 222 | 138 | 10 | 33 | 240 | 51 | 265 | 6.41e-14 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55035.t1 | AT1G66930 | 33.607 | 244 | 137 | 8 | 32 | 269 | 33 | 257 | 6.21e-31 | 122 |
MS.gene55035.t1 | AT1G66930 | 27.039 | 233 | 141 | 8 | 32 | 243 | 252 | 476 | 6.90e-14 | 72.0 |
MS.gene55035.t1 | AT5G38210 | 29.496 | 278 | 166 | 9 | 3 | 271 | 14 | 270 | 5.42e-28 | 113 |
MS.gene55035.t1 | AT1G67000 | 32.558 | 258 | 143 | 10 | 27 | 273 | 26 | 263 | 9.37e-28 | 112 |
MS.gene55035.t1 | AT1G66880 | 33.673 | 196 | 117 | 5 | 32 | 224 | 33 | 218 | 2.26e-26 | 108 |
MS.gene55035.t1 | AT1G66880 | 33.673 | 196 | 117 | 5 | 32 | 224 | 33 | 218 | 3.09e-26 | 108 |
MS.gene55035.t1 | AT1G66880 | 25.551 | 227 | 144 | 7 | 26 | 233 | 246 | 466 | 2.34e-16 | 79.3 |
MS.gene55035.t1 | AT1G66920 | 34.343 | 198 | 114 | 7 | 32 | 224 | 33 | 219 | 8.69e-26 | 106 |
MS.gene55035.t1 | AT1G66920 | 34.343 | 198 | 114 | 7 | 32 | 224 | 33 | 219 | 1.07e-25 | 106 |
MS.gene55035.t1 | AT1G66920 | 34.343 | 198 | 114 | 7 | 32 | 224 | 33 | 219 | 1.14e-25 | 106 |
MS.gene55035.t1 | AT1G66880 | 33.333 | 192 | 115 | 5 | 36 | 224 | 416 | 597 | 7.31e-25 | 104 |
MS.gene55035.t1 | AT1G66880 | 30.808 | 198 | 110 | 7 | 38 | 225 | 26 | 206 | 1.54e-18 | 85.9 |
MS.gene55035.t1 | AT1G66880 | 25.551 | 227 | 144 | 7 | 26 | 233 | 625 | 845 | 2.29e-16 | 79.3 |
MS.gene55035.t1 | AT1G66880 | 27.473 | 182 | 112 | 5 | 51 | 225 | 229 | 397 | 3.93e-13 | 69.7 |
MS.gene55035.t1 | AT1G66940 | 31.907 | 257 | 132 | 9 | 11 | 235 | 9 | 254 | 3.67e-23 | 96.7 |
MS.gene55035.t1 | AT1G66940 | 31.907 | 257 | 132 | 9 | 11 | 235 | 9 | 254 | 3.67e-23 | 96.7 |
MS.gene55035.t1 | AT1G66940 | 34.146 | 205 | 115 | 7 | 27 | 222 | 25 | 218 | 5.48e-23 | 96.7 |
MS.gene55035.t1 | AT5G38260 | 29.317 | 249 | 149 | 9 | 11 | 239 | 12 | 253 | 5.70e-23 | 98.6 |
MS.gene55035.t1 | AT1G66940 | 34.146 | 205 | 115 | 7 | 27 | 222 | 25 | 218 | 1.43e-22 | 95.9 |
MS.gene55035.t1 | AT5G38210 | 25.191 | 262 | 163 | 9 | 29 | 271 | 17 | 264 | 3.61e-21 | 93.6 |
MS.gene55035.t1 | AT5G38210 | 25.191 | 262 | 163 | 9 | 29 | 271 | 35 | 282 | 4.24e-21 | 93.2 |
MS.gene55035.t1 | AT5G38240 | 32.174 | 230 | 124 | 10 | 23 | 233 | 26 | 242 | 1.05e-16 | 80.1 |
MS.gene55035.t1 | AT5G38240 | 32.174 | 230 | 124 | 10 | 23 | 233 | 26 | 242 | 1.44e-16 | 79.7 |
MS.gene55035.t1 | AT5G38250 | 30.102 | 196 | 118 | 6 | 36 | 224 | 41 | 224 | 2.23e-15 | 76.3 |
MS.gene55035.t1 | AT1G67025 | 27.778 | 198 | 130 | 9 | 44 | 235 | 17 | 207 | 1.05e-14 | 72.0 |
MS.gene55035.t1 | AT1G66910 | 24.206 | 252 | 162 | 7 | 13 | 239 | 16 | 263 | 1.70e-13 | 70.9 |
MS.gene55035.t1 | AT1G66910 | 24.206 | 252 | 162 | 7 | 13 | 239 | 16 | 263 | 2.23e-13 | 70.5 |
MS.gene55035.t1 | AT1G66930 | 26.977 | 215 | 128 | 8 | 32 | 225 | 71 | 277 | 6.66e-12 | 65.9 |
MS.gene55035.t1 | AT1G66930 | 26.977 | 215 | 128 | 8 | 32 | 225 | 71 | 277 | 6.98e-12 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACACTGACCTCTTTGTTTA+TGG | 0.130607 | 7.2:+24622231 | MS.gene55035:CDS |
TGTGGAACTATAAAACAAAT+TGG | 0.275223 | 7.2:+24622003 | MS.gene55035:CDS |
TCATTTGTGCTTAAATATAA+AGG | 0.279833 | 7.2:-24621958 | None:intergenic |
AATAATCTTACACTCTTCTA+TGG | 0.285737 | 7.2:+24622264 | MS.gene55035:CDS |
GTGGAATTTGTGGCTATAAC+TGG | 0.286086 | 7.2:+24622547 | MS.gene55035:CDS |
TTATAGTTTACTCAGGGATT+TGG | 0.298905 | 7.2:+24622744 | MS.gene55035:intron |
GGATTATGAATTGAAGAATA+TGG | 0.307486 | 7.2:-24621915 | None:intergenic |
AAAGGGTGGCCACACTCTTT+TGG | 0.336216 | 7.2:-24622051 | None:intergenic |
TCCTTGCAAATAGTCCTCTT+TGG | 0.355072 | 7.2:-24622175 | None:intergenic |
ATTCTCAAAGTATGTTGATC+AGG | 0.369240 | 7.2:-24622150 | None:intergenic |
GAGTATGTTTATACTTGGTT+TGG | 0.373605 | 7.2:+24622354 | MS.gene55035:CDS |
CGCTTTCCATGTCATTCAAA+TGG | 0.378949 | 7.2:+24622321 | MS.gene55035:CDS |
TCTCAAGAATCTCCATCTTC+AGG | 0.381182 | 7.2:+24622630 | MS.gene55035:CDS |
AGTATGTTTATACTTGGTTT+GGG | 0.384405 | 7.2:+24622355 | MS.gene55035:CDS |
GAGGTGGATTTGTGGTGAAA+TGG | 0.401570 | 7.2:+24622484 | MS.gene55035:CDS |
CTGATGAGTATGTTTATACT+TGG | 0.403606 | 7.2:+24622349 | MS.gene55035:CDS |
CAATGCGTGGCTGTGGCAAA+TGG | 0.409336 | 7.2:-24622788 | None:intergenic |
GTGGCTATAACTGGATTTCA+AGG | 0.410918 | 7.2:+24622556 | MS.gene55035:CDS |
CAATTACTTTCCCTTTGAAC+GGG | 0.420517 | 7.2:+24622298 | MS.gene55035:CDS |
AGGTGGATTTGTGGTGAAAT+GGG | 0.430924 | 7.2:+24622485 | MS.gene55035:CDS |
AGGTTGGCCTCCGCAGGAAC+AGG | 0.436174 | 7.2:-24622586 | None:intergenic |
AGTGTAAGATTATTGTAGTC+AGG | 0.454650 | 7.2:-24622255 | None:intergenic |
CATGGAAAGCGCCCGTTCAA+AGG | 0.473626 | 7.2:-24622309 | None:intergenic |
TACAAGTGAGATTCAGCAAA+GGG | 0.479759 | 7.2:-24622068 | None:intergenic |
CAAAGTATGTTGATCAGGGT+TGG | 0.481310 | 7.2:-24622145 | None:intergenic |
ATGGAAAGCGCCCGTTCAAA+GGG | 0.482478 | 7.2:-24622308 | None:intergenic |
CATTACATTATAGTTTACTC+AGG | 0.494118 | 7.2:+24622737 | MS.gene55035:intron |
TTATATTTAAGCACAAATGA+AGG | 0.514339 | 7.2:+24621961 | MS.gene55035:CDS |
TCAATTACTTTCCCTTTGAA+CGG | 0.516792 | 7.2:+24622297 | MS.gene55035:CDS |
ATACAAAGTGCAATCGGAGG+TGG | 0.521652 | 7.2:+24622468 | MS.gene55035:CDS |
ATGGAGATTCTTGAGACTGT+GGG | 0.522612 | 7.2:-24622623 | None:intergenic |
ACTAGAATACAAAGTGCAAT+CGG | 0.525776 | 7.2:+24622462 | MS.gene55035:CDS |
CTGGAACAACCATACTTTCA+CGG | 0.529371 | 7.2:-24622407 | None:intergenic |
GAATATCCATTTGAATGACA+TGG | 0.532096 | 7.2:-24622327 | None:intergenic |
AGAACAAGGTTGGCCTCCGC+AGG | 0.533249 | 7.2:-24622592 | None:intergenic |
TTCAAAGGGAAAGTAATTGA+AGG | 0.534691 | 7.2:-24622294 | None:intergenic |
TGTGAGAATCTGTTTAATTG+TGG | 0.537109 | 7.2:+24621985 | MS.gene55035:CDS |
TCTTTAGACATACCTGAAGA+TGG | 0.540772 | 7.2:-24622642 | None:intergenic |
GGTCGATCCCCTCCCCAGAA+AGG | 0.542122 | 7.2:-24622030 | None:intergenic |
TTTGTGGTGAAATGGGTAGC+TGG | 0.543060 | 7.2:+24622492 | MS.gene55035:CDS |
TGCAATCGGAGGTGGATTTG+TGG | 0.547961 | 7.2:+24622476 | MS.gene55035:CDS |
GTTGTGTTGACAAGTTCTGT+TGG | 0.558070 | 7.2:-24622204 | None:intergenic |
AATGCGTGGCTGTGGCAAAT+GGG | 0.560024 | 7.2:-24622787 | None:intergenic |
GGGGTTCATTAGAACAAGGT+TGG | 0.561930 | 7.2:-24622602 | None:intergenic |
GCAATCAACGAATTCAAGAC+TGG | 0.582114 | 7.2:-24622426 | None:intergenic |
TTCTCAAAGTATGTTGATCA+GGG | 0.586156 | 7.2:-24622149 | None:intergenic |
ATTACATTATAGTTTACTCA+GGG | 0.597654 | 7.2:+24622738 | MS.gene55035:intron |
CAAACAACCTGTTCCTGCGG+AGG | 0.608810 | 7.2:+24622579 | MS.gene55035:CDS |
ACCAAAGAGGACTATTTGCA+AGG | 0.610215 | 7.2:+24622174 | MS.gene55035:CDS |
AAAGGGAAAGTAATTGAAGG+TGG | 0.617997 | 7.2:-24622291 | None:intergenic |
TGGAGGATAATAAACAAGGA+AGG | 0.620121 | 7.2:-24621895 | None:intergenic |
GTATCTGAATCAGTTTCAAG+AGG | 0.620450 | 7.2:-24621936 | None:intergenic |
TACTTTGAGAATCACCAAAG+AGG | 0.632633 | 7.2:+24622161 | MS.gene55035:CDS |
AATATGGAGGATAATAAACA+AGG | 0.638872 | 7.2:-24621899 | None:intergenic |
TTATGAATTGAAGAATATGG+AGG | 0.642427 | 7.2:-24621912 | None:intergenic |
CAGCTACATAACACTCAATG+AGG | 0.649155 | 7.2:+24622101 | MS.gene55035:CDS |
TGGCAAATGGGATTTCGCAA+CGG | 0.649442 | 7.2:-24622775 | None:intergenic |
AGGCAAACAACCTGTTCCTG+CGG | 0.652411 | 7.2:+24622576 | MS.gene55035:CDS |
GATGGAGATTCTTGAGACTG+TGG | 0.652705 | 7.2:-24622624 | None:intergenic |
ATACAAGTGAGATTCAGCAA+AGG | 0.657304 | 7.2:-24622069 | None:intergenic |
AGTCAGGACCATAAACAAAG+AGG | 0.660133 | 7.2:-24622239 | None:intergenic |
TGGAGATTCTTGAGACTGTG+GGG | 0.660697 | 7.2:-24622622 | None:intergenic |
GGAGATTCTTGAGACTGTGG+GGG | 0.662358 | 7.2:-24622621 | None:intergenic |
GGGGATCGACCAAAAGAGTG+TGG | 0.667307 | 7.2:+24622042 | MS.gene55035:CDS |
AAGTGAGATTCAGCAAAGGG+TGG | 0.689841 | 7.2:-24622065 | None:intergenic |
AGAATACAAAGTGCAATCGG+AGG | 0.696243 | 7.2:+24622465 | MS.gene55035:CDS |
CAAATGGGATTTCGCAACGG+CGG | 0.716564 | 7.2:-24622772 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTACATTATAGTTTACTCA+GGG | + | chr7.2:24622738-24622757 | MS.gene55035:intron | 20.0% |
!! | TCATTTGTGCTTAAATATAA+AGG | - | chr7.2:24621961-24621980 | None:intergenic | 20.0% |
!! | TTATATTTAAGCACAAATGA+AGG | + | chr7.2:24621961-24621980 | MS.gene55035:CDS | 20.0% |
! | AATAATCTTACACTCTTCTA+TGG | + | chr7.2:24622264-24622283 | MS.gene55035:CDS | 25.0% |
! | AATATGGAGGATAATAAACA+AGG | - | chr7.2:24621902-24621921 | None:intergenic | 25.0% |
! | AGTATGTTTATACTTGGTTT+GGG | + | chr7.2:24622355-24622374 | MS.gene55035:CDS | 25.0% |
! | CATTACATTATAGTTTACTC+AGG | + | chr7.2:24622737-24622756 | MS.gene55035:intron | 25.0% |
! | GGATTATGAATTGAAGAATA+TGG | - | chr7.2:24621918-24621937 | None:intergenic | 25.0% |
! | TGTGGAACTATAAAACAAAT+TGG | + | chr7.2:24622003-24622022 | MS.gene55035:CDS | 25.0% |
! | TTATGAATTGAAGAATATGG+AGG | - | chr7.2:24621915-24621934 | None:intergenic | 25.0% |
ACTAGAATACAAAGTGCAAT+CGG | + | chr7.2:24622462-24622481 | MS.gene55035:CDS | 30.0% | |
AGTGTAAGATTATTGTAGTC+AGG | - | chr7.2:24622258-24622277 | None:intergenic | 30.0% | |
ATTCTCAAAGTATGTTGATC+AGG | - | chr7.2:24622153-24622172 | None:intergenic | 30.0% | |
CAAAAATTAGGTGGAATTTG+TGG | + | chr7.2:24622537-24622556 | MS.gene55035:CDS | 30.0% | |
CTGATGAGTATGTTTATACT+TGG | + | chr7.2:24622349-24622368 | MS.gene55035:CDS | 30.0% | |
GAATATCCATTTGAATGACA+TGG | - | chr7.2:24622330-24622349 | None:intergenic | 30.0% | |
GAGTATGTTTATACTTGGTT+TGG | + | chr7.2:24622354-24622373 | MS.gene55035:CDS | 30.0% | |
TCAATTACTTTCCCTTTGAA+CGG | + | chr7.2:24622297-24622316 | MS.gene55035:CDS | 30.0% | |
TGTGAGAATCTGTTTAATTG+TGG | + | chr7.2:24621985-24622004 | MS.gene55035:CDS | 30.0% | |
TTATAGTTTACTCAGGGATT+TGG | + | chr7.2:24622744-24622763 | MS.gene55035:intron | 30.0% | |
TTCAAAGGGAAAGTAATTGA+AGG | - | chr7.2:24622297-24622316 | None:intergenic | 30.0% | |
TTCTCAAAGTATGTTGATCA+GGG | - | chr7.2:24622152-24622171 | None:intergenic | 30.0% | |
! | TGTGTGAAGTGTCAAAAATT+AGG | + | chr7.2:24622525-24622544 | MS.gene55035:CDS | 30.0% |
!!! | AACAAATTGGTTTTCCTTTC+TGG | + | chr7.2:24622016-24622035 | MS.gene55035:CDS | 30.0% |
!!! | ACAAATTGGTTTTCCTTTCT+GGG | + | chr7.2:24622017-24622036 | MS.gene55035:CDS | 30.0% |
AAAGGGAAAGTAATTGAAGG+TGG | - | chr7.2:24622294-24622313 | None:intergenic | 35.0% | |
ATACAAGTGAGATTCAGCAA+AGG | - | chr7.2:24622072-24622091 | None:intergenic | 35.0% | |
CAATTACTTTCCCTTTGAAC+GGG | + | chr7.2:24622298-24622317 | MS.gene55035:CDS | 35.0% | |
GTATCTGAATCAGTTTCAAG+AGG | - | chr7.2:24621939-24621958 | None:intergenic | 35.0% | |
TACAAGTGAGATTCAGCAAA+GGG | - | chr7.2:24622071-24622090 | None:intergenic | 35.0% | |
TCTTTAGACATACCTGAAGA+TGG | - | chr7.2:24622645-24622664 | None:intergenic | 35.0% | |
TGGAGGATAATAAACAAGGA+AGG | - | chr7.2:24621898-24621917 | None:intergenic | 35.0% | |
! | AACACTGACCTCTTTGTTTA+TGG | + | chr7.2:24622231-24622250 | MS.gene55035:CDS | 35.0% |
! | GTGAAGTGTCAAAAATTAGG+TGG | + | chr7.2:24622528-24622547 | MS.gene55035:CDS | 35.0% |
! | TACTTTGAGAATCACCAAAG+AGG | + | chr7.2:24622161-24622180 | MS.gene55035:CDS | 35.0% |
! | TTTTTCATGCCGTGAAAGTA+TGG | + | chr7.2:24622398-24622417 | MS.gene55035:CDS | 35.0% |
!!! | CAAATTGGTTTTCCTTTCTG+GGG | + | chr7.2:24622018-24622037 | MS.gene55035:CDS | 35.0% |
ACCAAAGAGGACTATTTGCA+AGG | + | chr7.2:24622174-24622193 | MS.gene55035:CDS | 40.0% | |
AGAATACAAAGTGCAATCGG+AGG | + | chr7.2:24622465-24622484 | MS.gene55035:CDS | 40.0% | |
AGTCAGGACCATAAACAAAG+AGG | - | chr7.2:24622242-24622261 | None:intergenic | 40.0% | |
ATGGAGATTCTTGAGACTGT+GGG | - | chr7.2:24622626-24622645 | None:intergenic | 40.0% | |
CAAAGTATGTTGATCAGGGT+TGG | - | chr7.2:24622148-24622167 | None:intergenic | 40.0% | |
CAGCTACATAACACTCAATG+AGG | + | chr7.2:24622101-24622120 | MS.gene55035:CDS | 40.0% | |
CGCTTTCCATGTCATTCAAA+TGG | + | chr7.2:24622321-24622340 | MS.gene55035:CDS | 40.0% | |
CTGGAACAACCATACTTTCA+CGG | - | chr7.2:24622410-24622429 | None:intergenic | 40.0% | |
GCAATCAACGAATTCAAGAC+TGG | - | chr7.2:24622429-24622448 | None:intergenic | 40.0% | |
GTGGAATTTGTGGCTATAAC+TGG | + | chr7.2:24622547-24622566 | MS.gene55035:CDS | 40.0% | |
GTGGCTATAACTGGATTTCA+AGG | + | chr7.2:24622556-24622575 | MS.gene55035:CDS | 40.0% | |
TCCTTGCAAATAGTCCTCTT+TGG | - | chr7.2:24622178-24622197 | None:intergenic | 40.0% | |
TCTCAAGAATCTCCATCTTC+AGG | + | chr7.2:24622630-24622649 | MS.gene55035:CDS | 40.0% | |
! | AGGTGGATTTGTGGTGAAAT+GGG | + | chr7.2:24622485-24622504 | MS.gene55035:CDS | 40.0% |
! | GTTGTGTTGACAAGTTCTGT+TGG | - | chr7.2:24622207-24622226 | None:intergenic | 40.0% |
AAGTGAGATTCAGCAAAGGG+TGG | - | chr7.2:24622068-24622087 | None:intergenic | 45.0% | |
ATACAAAGTGCAATCGGAGG+TGG | + | chr7.2:24622468-24622487 | MS.gene55035:CDS | 45.0% | |
GATGGAGATTCTTGAGACTG+TGG | - | chr7.2:24622627-24622646 | None:intergenic | 45.0% | |
GGGGTTCATTAGAACAAGGT+TGG | - | chr7.2:24622605-24622624 | None:intergenic | 45.0% | |
TCACGGCATGAAAAAGCTTG+AGG | - | chr7.2:24622393-24622412 | None:intergenic | 45.0% | |
TGGAGATTCTTGAGACTGTG+GGG | - | chr7.2:24622625-24622644 | None:intergenic | 45.0% | |
TGGCAAATGGGATTTCGCAA+CGG | - | chr7.2:24622778-24622797 | None:intergenic | 45.0% | |
TGTGGGGGTTCATTAGAACA+AGG | - | chr7.2:24622609-24622628 | None:intergenic | 45.0% | |
TTTGTGGTGAAATGGGTAGC+TGG | + | chr7.2:24622492-24622511 | MS.gene55035:CDS | 45.0% | |
! | ATCAGACGTTTTGCAATGCG+TGG | - | chr7.2:24622804-24622823 | None:intergenic | 45.0% |
! | GAGGTGGATTTGTGGTGAAA+TGG | + | chr7.2:24622484-24622503 | MS.gene55035:CDS | 45.0% |
!! | TTGGTTTTCCTTTCTGGGGA+GGG | + | chr7.2:24622022-24622041 | MS.gene55035:CDS | 45.0% |
!!! | ATTGGTTTTCCTTTCTGGGG+AGG | + | chr7.2:24622021-24622040 | MS.gene55035:CDS | 45.0% |
AATGCGTGGCTGTGGCAAAT+GGG | - | chr7.2:24622790-24622809 | None:intergenic | 50.0% | |
AGGCAAACAACCTGTTCCTG+CGG | + | chr7.2:24622576-24622595 | MS.gene55035:CDS | 50.0% | |
CAAATGGGATTTCGCAACGG+CGG | - | chr7.2:24622775-24622794 | None:intergenic | 50.0% | |
GGAGATTCTTGAGACTGTGG+GGG | - | chr7.2:24622624-24622643 | None:intergenic | 50.0% | |
! | AAAGGGTGGCCACACTCTTT+TGG | - | chr7.2:24622054-24622073 | None:intergenic | 50.0% |
! | TGCAATCGGAGGTGGATTTG+TGG | + | chr7.2:24622476-24622495 | MS.gene55035:CDS | 50.0% |
!! | ATGGAAAGCGCCCGTTCAAA+GGG | - | chr7.2:24622311-24622330 | None:intergenic | 50.0% |
!! | TGGTTTTCCTTTCTGGGGAG+GGG | + | chr7.2:24622023-24622042 | MS.gene55035:CDS | 50.0% |
CAAACAACCTGTTCCTGCGG+AGG | + | chr7.2:24622579-24622598 | MS.gene55035:CDS | 55.0% | |
CAATGCGTGGCTGTGGCAAA+TGG | - | chr7.2:24622791-24622810 | None:intergenic | 55.0% | |
GGGGATCGACCAAAAGAGTG+TGG | + | chr7.2:24622042-24622061 | MS.gene55035:CDS | 55.0% | |
! | CGTTTTGCAATGCGTGGCTG+TGG | - | chr7.2:24622798-24622817 | None:intergenic | 55.0% |
!! | CATGGAAAGCGCCCGTTCAA+AGG | - | chr7.2:24622312-24622331 | None:intergenic | 55.0% |
!! | AGAACAAGGTTGGCCTCCGC+AGG | - | chr7.2:24622595-24622614 | None:intergenic | 60.0% |
GGTCGATCCCCTCCCCAGAA+AGG | - | chr7.2:24622033-24622052 | None:intergenic | 65.0% | |
!! | AGGTTGGCCTCCGCAGGAAC+AGG | - | chr7.2:24622589-24622608 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 24621892 | 24622826 | 24621892 | ID=MS.gene55035 |
chr7.2 | mRNA | 24621892 | 24622826 | 24621892 | ID=MS.gene55035.t1;Parent=MS.gene55035 |
chr7.2 | exon | 24621892 | 24622651 | 24621892 | ID=MS.gene55035.t1.exon1;Parent=MS.gene55035.t1 |
chr7.2 | CDS | 24621892 | 24622651 | 24621892 | ID=cds.MS.gene55035.t1;Parent=MS.gene55035.t1 |
chr7.2 | exon | 24622750 | 24622826 | 24622750 | ID=MS.gene55035.t1.exon2;Parent=MS.gene55035.t1 |
chr7.2 | CDS | 24622750 | 24622826 | 24622750 | ID=cds.MS.gene55035.t1;Parent=MS.gene55035.t1 |
Gene Sequence |
Protein sequence |