AlfalfaGEDB | MS.gene55339

M. sativa cultivar XinJiangDaYe / MS.gene55339

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55339.t1	XP_003613989.1	97.3	783	21	0	1	783	46	828	0.00E+00	1563.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55339.t1	Q9C507	48.9	741	373	4	1	740	47	782	2.8e-204	713.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55339.t1	G7JXU6	97.3	783	21	0	1	783	46	828	0.0e+00	1563.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052584	MS.gene55339	0.800335	1.51E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013221	MS.gene55339	PPI
MS.gene049192	MS.gene55339	PPI
MS.gene056515	MS.gene55339	PPI
MS.gene06308	MS.gene55339	PPI
MS.gene41618	MS.gene55339	PPI
MS.gene49511	MS.gene55339	PPI
MS.gene55339	MS.gene95708	PPI
MS.gene93029	MS.gene55339	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55339.t1	MTR_5g043450	97.318	783	21	0	1	783	46	828	0.0	1591
MS.gene55339.t1	MTR_5g043450	26.129	620	444	8	59	671	3	615	7.96e-65	232
MS.gene55339.t1	MTR_2g058990	34.669	724	466	5	7	726	148	868	2.69e-150	464
MS.gene55339.t1	MTR_2g058990	29.058	616	404	16	75	671	111	712	1.43e-68	244
MS.gene55339.t1	MTR_2g058990	28.881	277	194	2	2	278	450	723	5.28e-31	131
MS.gene55339.t1	MTR_2g058990	23.792	269	197	5	376	639	108	373	5.39e-19	92.8
MS.gene55339.t1	MTR_8g086560	36.070	682	433	3	60	740	97	776	5.64e-146	451
MS.gene55339.t1	MTR_8g086560	30.420	572	388	8	2	570	143	707	3.24e-83	284
MS.gene55339.t1	MTR_8g086560	27.753	227	160	3	418	644	53	275	1.25e-16	85.1
MS.gene55339.t1	MTR_2g035620	35.207	747	447	10	35	750	66	806	7.51e-143	442

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55339.t1	AT1G69350	53.036	741	342	4	1	740	47	782	0.0	798
MS.gene55339.t1	AT1G69350	29.340	576	392	8	78	646	19	586	1.49e-80	275
MS.gene55339.t1	AT3G57430	34.091	748	465	11	25	750	68	809	7.69e-140	435
MS.gene55339.t1	AT3G57430	27.695	538	365	9	126	644	65	597	7.25e-64	230
MS.gene55339.t1	AT3G57430	27.696	408	281	6	222	620	60	462	4.47e-43	169
MS.gene55339.t1	AT4G18750	33.576	688	442	4	62	741	99	779	2.90e-137	427
MS.gene55339.t1	AT4G18750	32.143	560	364	8	2	553	143	694	1.03e-85	290
MS.gene55339.t1	AT4G18750	28.022	546	377	9	157	691	93	633	2.65e-62	225
MS.gene55339.t1	AT4G13650	32.345	708	474	3	57	760	288	994	8.03e-132	418
MS.gene55339.t1	AT4G13650	29.514	576	401	5	71	644	99	671	2.24e-73	259

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Find 157 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTATAGATTTGGATC+TGG	0.482581	5.2:+67739356	MS.gene55339:CDS
AAAATGTGGCTTTGTGGATT+CGG	0.360917	5.2:+67738449	MS.gene55339:CDS
AAACTGGTATGAATCAAGAA+AGG	0.577490	5.2:+67739265	MS.gene55339:CDS
AACAATACTACTACTAGAGA+TGG	0.586202	5.2:+67739479	MS.gene55339:CDS
AACACTATGAGGGATTATTA+TGG	0.294942	5.2:+67738987	MS.gene55339:CDS
AACATGAAGGAATCAGGAGA+AGG	0.606744	5.2:-67737274	None:intergenic
AAGAAAGGTGAGATCAAAGA+TGG	0.522824	5.2:+67739280	MS.gene55339:CDS
AAGGTGAGATCAAAGATGGA+AGG	0.551541	5.2:+67739284	MS.gene55339:CDS
AATCATCTTATGGAAGAGTG+AGG	0.675456	5.2:-67738871	None:intergenic
AATTCAAGCTTGCTCCAATT+TGG	0.221613	5.2:+67738632	MS.gene55339:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTGGTATGAATCAAGAA+AGG	+	chr5.2:67739265-67739284	MS.gene55339:CDS	30.0%
AACAATACTACTACTAGAGA+TGG	+	chr5.2:67739479-67739498	MS.gene55339:CDS	30.0%
AACACTATGAGGGATTATTA+TGG	+	chr5.2:67738987-67739006	MS.gene55339:CDS	30.0%
AGCTTGAATTGCACTTAAAA+AGG	-	chr5.2:67738622-67738641	None:intergenic	30.0%
ATATCGTGTTATGTTGAGAA+TGG	+	chr5.2:67737619-67737638	MS.gene55339:CDS	30.0%
ATTGTTATGTATAGTCAGTG+TGG	+	chr5.2:67737829-67737848	MS.gene55339:CDS	30.0%
ATTTGTTCAGAACTCTTTGA+TGG	+	chr5.2:67738416-67738435	MS.gene55339:CDS	30.0%
GAATAAGTACAGATGATACA+GGG	+	chr5.2:67739204-67739223	MS.gene55339:CDS	30.0%
TACAATCACCACATTCAAAT+GGG	+	chr5.2:67737355-67737374	MS.gene55339:CDS	30.0%
TACCAGTTACAATGATCTTA+TGG	-	chr5.2:67738686-67738705	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	67737232	67739583	67737232	ID=MS.gene55339
chr5.2	mRNA	67737232	67739583	67737232	ID=MS.gene55339.t1;Parent=MS.gene55339
chr5.2	exon	67737232	67739583	67737232	ID=MS.gene55339.t1.exon1;Parent=MS.gene55339.t1
chr5.2	CDS	67737232	67739583	67737232	ID=cds.MS.gene55339.t1;Parent=MS.gene55339.t1

Gene Sequence

>MS.gene55339

ATGGGTTCTCTTCAATCATCAAGACTCGTTTTTTACACACACCCTTCTCCTGATTCCTTCATGTTTAGCGTCCTCATCAAATGCCATCTCTGGAATCATCTTTTTCGCGAAGTTCTTTCGCTTTACAATCACCACATTCAAATGGGTTCAAAATTGACGAAAAATTGTGCTTTTTTGTATCCTTCTGTTATTAGAGCTGTTACTGGTGTTGGTGAGTTGGTTGTTGGAAGAAAGTTACATGGAAGGATTTTAAAATCTGGGTTTTGTGAGGATCGCGTTATTGGGACTTCGTTGGTTGGAATGTATGGGGAGTTATGTTTTTTAAGGGATGCGAAGAAAGTGTTCGATGAAATGTGTGTGAGAGATTTGGTTTTATGGAGTTCGATTATATCGTGTTATGTTGAGAATGGGGTTTATAGAGAAGGGTTAGAGATGTTTCGTTCGATGATTTGTGAAGGGATTAGACCGGACTCGGTTATGTTGCTTAGTGTAGCTGAGGCTTGTGGTAAAATTGGTTGTTTGAGGTTGGCACAATCGGTTCATGGATATGTGATGAGAGAAGGGATGGTTGGTGATGGGAGTTTGAGTAATTCGCTTATTGTTATGTATAGTCAGTGTGGTTACTTGTGTAGAGCGAAAAGGTTGTTTGAATGTATTGATGATCGGAGTACTTCGTGTTGGACTTCTATGATTTCGGCATATAATCAAAATGAGTGTTTTGAAGAGGCGTTGGATGTTTTTATTAAGATGCAAGATTCGGAGGTGGAACCGAATGACGTGACGATGATTAGTGTTCTGAATTCGTGTGCTAGATTAGGTTGGTTAAAAGAGGGGAAATCGGTTCATTGCTTTGTTTTAAGGAATGCAATGGGTGTTACTGGTCTTGATCTTGGGCCTGCACTAATAGACTTCTATGCAGCATGCTGGAAAATGAATAGTTGTGAAAAGCTTCTTCATTTAATAGGAAACGAAAACATTGTATCGTGGAATACACTAATATCATTTTATGCTCGAGAGGGTTTAAATGATGAAGCCATGGCATTCTTTGCGTGTATGGTGGCAAAGGGGCTAATGCCAGACTCATTTAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTTCTGGTTCAATACAATTTGGACAGCAGATACATGGTCATGTCATGAAAAGAGGTTTCTTTGATGAATTTGTTCAGAACTCTTTGATGGATATGTATTCAAAATGTGGCTTTGTGGATTCGGCATACACAATTTTTAACAAAGTCAAGCACAAAAGCATTGTGGCATGGAACTGTATGATTTGTGGGTTTTCTCAGAATGGAATTTCAGTAGAAGCACTCAGCCTTTTTGATGAGATGTTCAAAAATCGCCTCACGATTAACGAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGACAAGGGAAAATGGATTCACCATAAGATCATTGTAACTGGTAATCATAACGATCTATATATCGATACAGCTTTGGTAGACATGTATGCAAAGTGTGGAGACCTTCAAACAGCCCGAAAAGTTTTCGATAGCATAGTCGAGAAAAGTGTGGTGTCATGGAGTACCATGATTGCTGCTCATGGCATACATGGTCAAATAAATGCAGCCACCTCACTCTTCCATAAGATGATTCTCTCAAATATCAAACCGAATGAAGTAACCTTCATGAATATCTTATCTGCCTGCAGGCATGCCGGATCAGTGAAAGAAGGGAAGTTTTATTTTAACACTATGAGGGATTATTATGGCATAGTGCCTAATGTAGAACATTTTGCCTCCATAGTTGACCTTCTAAGTCGTGCCGGTGATATCAACGGAGCCTATGAAATAATTAAATCGATACGCATGCCAGTGGCGGCTAGCATATGGGGAGCTTTACTTAACGGTTGTCGAATACACGGGAGGATGGACATGATTGAGTACATTGCTGAAGAACTCGGAGGAATAAGTACAGATGATACAGGGTACTATACGTTGTTATCTAACATATATGCTGAAGGAGGAAACTGGTATGAATCAAGAAAGGTGAGATCAAAGATGGAAGGAATGGGCCTGAAAAAGGTACCTGGCTACAGTACAGTTGAGATAGATAGGAAAATCTATAGATTTGGATCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTGCATGTTTTTAGAAAATTTTCAAAGCTTGGCACAGGAACAAGGATCTGATGTAGAATGCTTTATGTATAACAATACTACTACTAGAGATGGTGTGTTTTTTGATGATTTTAGTGTATATAACTTGCAGAGAGAAGCAAGCAATCACATTGGGAATAAATCAGTCCTACTTTAG

Protein sequence

>MS.gene55339.t1

MGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLYNHHIQMGSKLTKNCAFLYPSVIRAVTGVGELVVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAQSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGWLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYAACWKMNSCEKLLHLIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGLMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFVDSAYTIFNKVKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLTINEVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNHNDLYIDTALVDMYAKCGDLQTARKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMILSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRMPVAASIWGALLNGCRIHGRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEIDRKIYRFGSGDTSEWQMKEICMFLENFQSLAQEQGSDVECFMYNNTTTRDGVFFDDFSVYNLQREASNHIGNKSVLL