AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55542

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55542.t1 MTR_2g039140 40.217 184 77 2 1 183 120 271 6.51e-32 123
MS.gene55542.t1 MTR_4g036430 87.179 39 5 0 1 39 31 69 1.36e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55542.t1 AT3G29785 57.778 90 37 1 11 100 7 95 7.07e-30 112

Find 110 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATACCAACTGAACTTAAT+TGG 0.091541 6.2:-17615293 None:intergenic
AATTCTTGAAGATTTCTTTC+TGG 0.174999 6.2:-17615803 None:intergenic
CTGAGAACTACGATGATTTC+TGG 0.189947 6.2:-17615577 None:intergenic
TCATCATCCTTCATTGATTC+TGG 0.214644 6.2:-17615033 None:intergenic
GAAGTTAAGATTAAGTTAAA+TGG 0.236272 6.2:+17615894 MS.gene55542:CDS
ATCTCATCTGTGGGACTTCC+TGG 0.243179 6.2:-17617079 None:intergenic
CTAGAAGACCTTCTTAATTC+AGG 0.247761 6.2:-17617175 None:intergenic
TTCGCCTCTTGATTCTTTGC+TGG 0.253882 6.2:-17615666 None:intergenic
CTCTGGTCTCTTATTCTAAC+AGG 0.293382 6.2:-17618791 None:intergenic
ACTACGATGATTTCTGGATT+TGG 0.314338 6.2:-17615571 None:intergenic
TTCTGCCAATTCCTCTGATT+GGG 0.327914 6.2:-17617104 None:intergenic
ATTCTGCCAATTCCTCTGAT+TGG 0.336830 6.2:-17617105 None:intergenic
ATTCTTGAAGATTTCTTTCT+GGG 0.357883 6.2:-17615802 None:intergenic
AATACCAACTGAACTTAATT+GGG 0.364604 6.2:-17615292 None:intergenic
TCGCCTCTTGATTCTTTGCT+GGG 0.374974 6.2:-17615665 None:intergenic
ATGGTGCGGACTTTGGCTTT+TGG 0.377376 6.2:+17614947 MS.gene55542:CDS
TGACGCGTTGATATGCTCTT+TGG 0.378260 6.2:+17615725 MS.gene55542:CDS
ATTTCTGGATTTGGATCGTC+TGG 0.389287 6.2:-17615562 None:intergenic
CATGCTTCATCATAATCTTC+AGG 0.392057 6.2:-17617256 None:intergenic
GTAGAGATGGATGATGTTCC+AGG 0.394130 6.2:+17617061 MS.gene55542:CDS
GATTCCCCAATCAGAGGAAT+TGG 0.403290 6.2:+17617099 MS.gene55542:CDS
TGTCTTCCCTACCAGATAGT+TGG 0.404400 6.2:+17615349 MS.gene55542:CDS
GTAAACTTTACCAAGGTTAC+CGG 0.407938 6.2:-17615832 None:intergenic
GACCTTCTTAATTCAGGAAC+TGG 0.408428 6.2:-17617169 None:intergenic
ACAGTAGCGCTCCAACTATC+TGG 0.408688 6.2:-17615360 None:intergenic
TCATCCATCTCTACATAAAC+AGG 0.414467 6.2:-17617052 None:intergenic
AGAAATTCAACCAGAGGAAA+TGG 0.417568 6.2:+17615522 MS.gene55542:CDS
TGGAAATGAACAATCTTGTA+AGG 0.417574 6.2:+17615857 MS.gene55542:CDS
AAGTTAAGATTAAGTTAAAT+GGG 0.423418 6.2:+17615895 MS.gene55542:CDS
TAGTTTATGTATCTGCTGTT+TGG 0.431465 6.2:-17617208 None:intergenic
ATTTGATGATGTTCGTGATC+TGG 0.433721 6.2:+17615422 MS.gene55542:CDS
TGAACAATCTTGTAAGGTTG+TGG 0.438789 6.2:+17615863 MS.gene55542:CDS
GCAAATGTTGCTTCCACCTC+AGG 0.445655 6.2:+17615696 MS.gene55542:CDS
GGAGAGCAAGGAAGAGTCTT+GGG 0.448480 6.2:+17615746 MS.gene55542:CDS
AAGTTCGATGGTGCGGACTT+TGG 0.452497 6.2:+17614940 MS.gene55542:CDS
GAGATCCGACGAAGAGAGTT+GGG 0.454617 6.2:+17615456 MS.gene55542:CDS
TGAACTTTATTTGATGCTGA+AGG 0.474628 6.2:-17615186 None:intergenic
TACAAGATTGTTCATTTCCA+AGG 0.487050 6.2:-17615854 None:intergenic
TTTACCACGTCCATTTCCTC+TGG 0.487326 6.2:-17615532 None:intergenic
AACCTTGGTAAAGTTTACCT+TGG 0.487612 6.2:+17615837 MS.gene55542:CDS
ACCTTTGTTAACATATCTGC+GGG 0.491781 6.2:-17618726 None:intergenic
CTTAATTCAGGAACTGGAGT+AGG 0.496648 6.2:-17617163 None:intergenic
GAACAATCTTGTAAGGTTGT+GGG 0.497160 6.2:+17615864 MS.gene55542:CDS
TGGAGAGCAAGGAAGAGTCT+TGG 0.501744 6.2:+17615745 MS.gene55542:CDS
CTCGCTCAATCCTGAGTCGT+TGG 0.505380 6.2:-17617029 None:intergenic
TCTATCGAGTGTTGGAATTG+TGG 0.512167 6.2:+17615609 MS.gene55542:CDS
AACTACATGTTGTTAACTGA+TGG 0.513907 6.2:+17617226 MS.gene55542:CDS
CGCGTCACCTCCTCCTGAGG+TGG 0.515832 6.2:-17615709 None:intergenic
GAGTCTTGGGTGTTAGACTC+TGG 0.518950 6.2:+17615759 MS.gene55542:CDS
AATTATGTCCCCGGTAACCT+TGG 0.523159 6.2:+17615822 MS.gene55542:CDS
CACAGCTGTGAGTAGCTCCT+CGG 0.527844 6.2:+17615383 MS.gene55542:CDS
CTCCAGTTCCTGAATTAAGA+AGG 0.530952 6.2:+17617167 MS.gene55542:CDS
TAAACTTTACCAAGGTTACC+GGG 0.530959 6.2:-17615831 None:intergenic
ACAGCTGTGAGTAGCTCCTC+GGG 0.532462 6.2:+17615384 MS.gene55542:CDS
AGAGATCCGACGAAGAGAGT+TGG 0.533075 6.2:+17615455 MS.gene55542:CDS
GCTCAATCCTGAGTCGTTGG+TGG 0.538625 6.2:-17617026 None:intergenic
TAGCGCTCCAACTATCTGGT+AGG 0.539026 6.2:-17615356 None:intergenic
TGTTGGAATTGTGGAAAGAC+GGG 0.540082 6.2:+17615618 MS.gene55542:CDS
GATTGGGGAATCTCATCTGT+GGG 0.541163 6.2:-17617088 None:intergenic
TGATTGGGGAATCTCATCTG+TGG 0.543207 6.2:-17617089 None:intergenic
AACACAACCACCAACGACTC+AGG 0.547428 6.2:+17617019 MS.gene55542:CDS
CGCAGATATGTTAACAAAGG+TGG 0.548479 6.2:+17618728 MS.gene55542:CDS
CAAATAAAGTTCATTTGATG+AGG 0.550433 6.2:+17615196 MS.gene55542:CDS
AAAGAAACCAGAATCAATGA+AGG 0.550949 6.2:+17615026 MS.gene55542:CDS
GGAACTGGAGTAGGATGCAC+TGG 0.552002 6.2:-17617154 None:intergenic
CAAGTGCTTGTCTGTCGAGA+AGG 0.553812 6.2:-17615062 None:intergenic
AACCACCGCTGGTCTTATGA+AGG 0.557775 6.2:+17615140 MS.gene55542:CDS
CTCTATATGCAATACTGAAG+AGG 0.557875 6.2:-17615490 None:intergenic
ACTCGAAATCTATCGAGTGT+TGG 0.561027 6.2:+17615601 MS.gene55542:CDS
GTGAAAATTGAAAAGTTCGA+TGG 0.563926 6.2:+17614928 MS.gene55542:CDS
GTGTTGGAATTGTGGAAAGA+CGG 0.567490 6.2:+17615617 MS.gene55542:CDS
ACAACCCAATTAAGTTCAGT+TGG 0.568124 6.2:+17615288 MS.gene55542:CDS
AAGTTGTGCTCAACTTCAGT+TGG 0.568559 6.2:+17618768 MS.gene55542:CDS
GTTGCTTCCACCTCAGGAGG+AGG 0.568689 6.2:+17615702 MS.gene55542:CDS
TCTGCCAATTCCTCTGATTG+GGG 0.571085 6.2:-17617103 None:intergenic
TTTACACTTCGGATGACAGA+AGG 0.576141 6.2:+17615225 MS.gene55542:CDS
AATCAATGAAGGATGATGAG+TGG 0.583906 6.2:+17615037 MS.gene55542:CDS
CTCCCACTTACTAGCATCCG+TGG 0.588137 6.2:-17617284 None:intergenic
ATCTTCAAGAATTATGTCCC+CGG 0.593016 6.2:+17615813 MS.gene55542:CDS
GATGACAGAAGGCGCATCAG+TGG 0.593273 6.2:+17615236 MS.gene55542:CDS
AGCGCTCCAACTATCTGGTA+GGG 0.594325 6.2:-17615355 None:intergenic
CACCTTTGTTAACATATCTG+CGG 0.595625 6.2:-17618727 None:intergenic
AAATGGACGTGGTAAATCAA+AGG 0.596335 6.2:+17615539 MS.gene55542:CDS
CTTCTCGACAGACAAGCACT+TGG 0.596707 6.2:+17615063 MS.gene55542:CDS
TGAGGCGGTTGTTTACACTT+CGG 0.598027 6.2:+17615214 MS.gene55542:CDS
ATAAAGTTCATTTGATGAGG+CGG 0.598437 6.2:+17615199 MS.gene55542:CDS
CGAGCCTGTTTATGTAGAGA+TGG 0.602356 6.2:+17617048 MS.gene55542:CDS
AATGTTGCTTCCACCTCAGG+AGG 0.603928 6.2:+17615699 MS.gene55542:CDS
AATTGAAAAGTTCGATGGTG+CGG 0.608192 6.2:+17614933 MS.gene55542:CDS
TGGTATTGAATTTGACGATG+AGG 0.610535 6.2:+17615308 MS.gene55542:CDS
GATATGCTCTTTGGAGAGCA+AGG 0.611064 6.2:+17615734 MS.gene55542:CDS
ATTCACCCAACTCTCTTCGT+CGG 0.611639 6.2:-17615461 None:intergenic
TTCCAAGGTAAACTTTACCA+AGG 0.615217 6.2:-17615839 None:intergenic
TACATGTTGTTAACTGATGG+AGG 0.616383 6.2:+17617229 MS.gene55542:CDS
AGCCTTCATAAGACCAGCGG+TGG 0.620835 6.2:-17615142 None:intergenic
GAATCAAGAGGCGAAAGATG+AGG 0.623736 6.2:+17615674 MS.gene55542:CDS
GCAAAAGAGAAAACCACCGC+TGG 0.626545 6.2:+17615129 MS.gene55542:CDS
AGATGAGATTCCCCAATCAG+AGG 0.627217 6.2:+17617093 MS.gene55542:CDS
CAACGCGTCACCTCCTCCTG+AGG 0.630580 6.2:-17615712 None:intergenic
TATGGCTGTAGACGAAGGAA+AGG 0.639025 6.2:+17614906 None:intergenic
AGAGGAAGAAATTCAACCAG+AGG 0.643795 6.2:+17615516 MS.gene55542:CDS
ACTCCCAGCAAAGAATCAAG+AGG 0.645621 6.2:+17615662 MS.gene55542:CDS
GGAGTTATGGCTGTAGACGA+AGG 0.656467 6.2:+17614901 None:intergenic
TCCCGCAGATATGTTAACAA+AGG 0.657588 6.2:+17618725 MS.gene55542:CDS
TCAACCAGAGGAAATGGACG+TGG 0.665050 6.2:+17615528 MS.gene55542:CDS
GGATGCACTGGTGTGTCAGA+CGG 0.673844 6.2:-17617142 None:intergenic
GTATTGCATATAGAGTCAAG+AGG 0.689643 6.2:+17615498 MS.gene55542:CDS
TGATGAAGCATGTCAGACCA+CGG 0.691661 6.2:+17617267 MS.gene55542:CDS
AAACTTTACCAAGGTTACCG+GGG 0.698437 6.2:-17615830 None:intergenic
AAGAGCCTTCATAAGACCAG+CGG 0.707222 6.2:-17615145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTAAGATTAAGTTAAAT+GGG + chr6.2:17615895-17615914 MS.gene55542:CDS 15.0%
!! GAAGTTAAGATTAAGTTAAA+TGG + chr6.2:17615894-17615913 MS.gene55542:CDS 20.0%
! AATACCAACTGAACTTAATT+GGG - chr6.2:17615295-17615314 None:intergenic 25.0%
! AATTCTTGAAGATTTCTTTC+TGG - chr6.2:17615806-17615825 None:intergenic 25.0%
! ACTGGTTATATATTTACTGT+TGG + chr6.2:17618399-17618418 MS.gene55542:intron 25.0%
! ATTCTTGAAGATTTCTTTCT+GGG - chr6.2:17615805-17615824 None:intergenic 25.0%
! CAAATAAAGTTCATTTGATG+AGG + chr6.2:17615196-17615215 MS.gene55542:CDS 25.0%
! CAAATGAAAATCCTAATCTA+TGG + chr6.2:17616126-17616145 MS.gene55542:intron 25.0%
! CTAACATTGATCAAAATTCA+AGG + chr6.2:17618693-17618712 MS.gene55542:intron 25.0%
! TATATATTTACTGTTGGTAC+TGG + chr6.2:17618405-17618424 MS.gene55542:intron 25.0%
AAAGAAACCAGAATCAATGA+AGG + chr6.2:17615026-17615045 MS.gene55542:CDS 30.0%
AAAGAATTGATATGGCTTCA+AGG + chr6.2:17618513-17618532 MS.gene55542:intron 30.0%
AAAGGAGAGATAAAAGTAGA+AGG + chr6.2:17618327-17618346 MS.gene55542:intron 30.0%
AAATGTTTGTACTTCAGCAA+AGG + chr6.2:17618309-17618328 MS.gene55542:intron 30.0%
AACTACATGTTGTTAACTGA+TGG + chr6.2:17617226-17617245 MS.gene55542:CDS 30.0%
AAGCTAGCAAAGAATTGATA+TGG + chr6.2:17618505-17618524 MS.gene55542:intron 30.0%
AGAAAAAGGGAAAGAGAATA+TGG + chr6.2:17617657-17617676 MS.gene55542:intron 30.0%
ATAAAGTTCATTTGATGAGG+CGG + chr6.2:17615199-17615218 MS.gene55542:CDS 30.0%
ATATGTGAAGACTGTATACT+TGG + chr6.2:17616239-17616258 MS.gene55542:intron 30.0%
CAATACCAACTGAACTTAAT+TGG - chr6.2:17615296-17615315 None:intergenic 30.0%
GAATTTGACATGAAGGATTT+AGG + chr6.2:17617913-17617932 MS.gene55542:intron 30.0%
GGATGATGAAAACAAAAAGA+TGG + chr6.2:17616943-17616962 MS.gene55542:intron 30.0%
GTAGCAAAACTTCTTGAATT+TGG - chr6.2:17616552-17616571 None:intergenic 30.0%
GTCAAAAGAATTTGACATGA+AGG + chr6.2:17617906-17617925 MS.gene55542:intron 30.0%
GTGAAAATTGAAAAGTTCGA+TGG + chr6.2:17614928-17614947 MS.gene55542:CDS 30.0%
TAAGTTAAATGGGTCTGTAT+GGG + chr6.2:17615905-17615924 MS.gene55542:intron 30.0%
TACAAGATTGTTCATTTCCA+AGG - chr6.2:17615857-17615876 None:intergenic 30.0%
TAGTTTATGTATCTGCTGTT+TGG - chr6.2:17617211-17617230 None:intergenic 30.0%
TATAACCAGTTGTACTTCTT+CGG - chr6.2:17618389-17618408 None:intergenic 30.0%
TATGTGCATATTAGTGATCA+AGG + chr6.2:17616842-17616861 MS.gene55542:intron 30.0%
TGGAAATGAACAATCTTGTA+AGG + chr6.2:17615857-17615876 MS.gene55542:CDS 30.0%
TGTTGAATCTTTGCAAAACA+CGG - chr6.2:17618023-17618042 None:intergenic 30.0%
TTAAGTTAAATGGGTCTGTA+TGG + chr6.2:17615904-17615923 MS.gene55542:intron 30.0%
! ATACCAAGAATTTTCTTTGC+CGG - chr6.2:17617940-17617959 None:intergenic 30.0%
! GTTTTGCAAAGATTCAACAT+GGG + chr6.2:17618024-17618043 MS.gene55542:intron 30.0%
! TATTTGAAGCTTTCAAGAGA+TGG + chr6.2:17616450-17616469 MS.gene55542:intron 30.0%
! TGAACTTTATTTGATGCTGA+AGG - chr6.2:17615189-17615208 None:intergenic 30.0%
! TGTTTTGCAAAGATTCAACA+TGG + chr6.2:17618023-17618042 MS.gene55542:intron 30.0%
AAAGAGTGATGTACAAAGAC+AGG + chr6.2:17616993-17617012 MS.gene55542:intron 35.0%
AAAGTGCACTTCTTGGATTT+GGG - chr6.2:17616884-17616903 None:intergenic 35.0%
AAATCCAGGTAAAGCTCATT+GGG + chr6.2:17618242-17618261 MS.gene55542:intron 35.0%
AAATGGACGTGGTAAATCAA+AGG + chr6.2:17615539-17615558 MS.gene55542:CDS 35.0%
AACCTTGGTAAAGTTTACCT+TGG + chr6.2:17615837-17615856 MS.gene55542:CDS 35.0%
AAGGAAAACTACCAAGTCTT+CGG + chr6.2:17616201-17616220 MS.gene55542:intron 35.0%
AATCAATGAAGGATGATGAG+TGG + chr6.2:17615037-17615056 MS.gene55542:CDS 35.0%
AATCTATGGCACAAGAGATT+AGG + chr6.2:17616140-17616159 MS.gene55542:intron 35.0%
AATCTCTTGTGCCATAGATT+AGG - chr6.2:17616140-17616159 None:intergenic 35.0%
AATTGAAAAGTTCGATGGTG+CGG + chr6.2:17614933-17614952 MS.gene55542:CDS 35.0%
ACAAAATACCAGAAGAGGTA+TGG + chr6.2:17616768-17616787 MS.gene55542:intron 35.0%
ACAACCCAATTAAGTTCAGT+TGG + chr6.2:17615288-17615307 MS.gene55542:CDS 35.0%
ACCTTTGTTAACATATCTGC+GGG - chr6.2:17618729-17618748 None:intergenic 35.0%
ACGAAAAACTTAATCTCCGT+AGG + chr6.2:17615960-17615979 MS.gene55542:intron 35.0%
AGAAATTCAACCAGAGGAAA+TGG + chr6.2:17615522-17615541 MS.gene55542:CDS 35.0%
AGACTTCATTTCGTCTTTCA+TGG - chr6.2:17617314-17617333 None:intergenic 35.0%
AGGTTAAAGAAGAGCTTGTA+TGG + chr6.2:17617685-17617704 MS.gene55542:intron 35.0%
ATCACGAGAGATAAGCAAAA+AGG + chr6.2:17617964-17617983 MS.gene55542:intron 35.0%
ATCTCTTGAAGAAGCAACAA+TGG - chr6.2:17617792-17617811 None:intergenic 35.0%
ATCTTCAAGAATTATGTCCC+CGG + chr6.2:17615813-17615832 MS.gene55542:CDS 35.0%
ATGAAGGTTATGCACTCAAA+AGG + chr6.2:17616182-17616201 MS.gene55542:intron 35.0%
ATTAGGCCATATGAGTGAAA+AGG + chr6.2:17616157-17616176 MS.gene55542:intron 35.0%
ATTCCATATGCTTCAGCAAT+TGG + chr6.2:17618144-17618163 MS.gene55542:intron 35.0%
ATTTCTATTGACCGAAGACT+TGG - chr6.2:17616215-17616234 None:intergenic 35.0%
CACCTTTGTTAACATATCTG+CGG - chr6.2:17618730-17618749 None:intergenic 35.0%
CAGAAGGATTCTCAGAAAAA+GGG + chr6.2:17617644-17617663 MS.gene55542:intron 35.0%
CATGCTTCATCATAATCTTC+AGG - chr6.2:17617259-17617278 None:intergenic 35.0%
CTAGAAGACCTTCTTAATTC+AGG - chr6.2:17617178-17617197 None:intergenic 35.0%
CTCTATATGCAATACTGAAG+AGG - chr6.2:17615493-17615512 None:intergenic 35.0%
GAACAATCTTGTAAGGTTGT+GGG + chr6.2:17615864-17615883 MS.gene55542:CDS 35.0%
GAAGTACAAACATTTCTCTG+TGG - chr6.2:17618304-17618323 None:intergenic 35.0%
GATGACTGGAAGATTTCAAA+AGG + chr6.2:17616023-17616042 MS.gene55542:intron 35.0%
GTAAACTTTACCAAGGTTAC+CGG - chr6.2:17615835-17615854 None:intergenic 35.0%
GTATTGCATATAGAGTCAAG+AGG + chr6.2:17615498-17615517 MS.gene55542:CDS 35.0%
TAAACTTTACCAAGGTTACC+GGG - chr6.2:17615834-17615853 None:intergenic 35.0%
TACATGTTGTTAACTGATGG+AGG + chr6.2:17617229-17617248 MS.gene55542:CDS 35.0%
TCATCCATCTCTACATAAAC+AGG - chr6.2:17617055-17617074 None:intergenic 35.0%
TCTTCATGGAGACTTAAATG+AGG + chr6.2:17617603-17617622 MS.gene55542:intron 35.0%
TGAACAATCTTGTAAGGTTG+TGG + chr6.2:17615863-17615882 MS.gene55542:CDS 35.0%
TTAGGCCATATGAGTGAAAA+GGG + chr6.2:17616158-17616177 MS.gene55542:intron 35.0%
TTCATATTCACCACCATTGT+CGG - chr6.2:17616525-17616544 None:intergenic 35.0%
TTCCAAGGTAAACTTTACCA+AGG - chr6.2:17615842-17615861 None:intergenic 35.0%
TTGTTGCAACTGCAATCAAA+TGG - chr6.2:17616109-17616128 None:intergenic 35.0%
TTTGATCTCCAATCAGACAT+GGG + chr6.2:17617333-17617352 MS.gene55542:intron 35.0%
! ACTACGATGATTTCTGGATT+TGG - chr6.2:17615574-17615593 None:intergenic 35.0%
! ATTAAGTTTTTCGTGAGGTC+GGG - chr6.2:17615954-17615973 None:intergenic 35.0%
! CTCTCACATCTTAGAGTTTT+CGG + chr6.2:17616809-17616828 MS.gene55542:intron 35.0%
! CTTTTATCGATGATCACTCT+AGG + chr6.2:17616390-17616409 MS.gene55542:intron 35.0%
! GATTAAGTTTTTCGTGAGGT+CGG - chr6.2:17615955-17615974 None:intergenic 35.0%
! TGGTATTGAATTTGACGATG+AGG + chr6.2:17615308-17615327 MS.gene55542:CDS 35.0%
!! AAGCGGTTAAATGGATTTTG+AGG + chr6.2:17618265-17618284 MS.gene55542:intron 35.0%
!! ATTTGATGATGTTCGTGATC+TGG + chr6.2:17615422-17615441 MS.gene55542:CDS 35.0%
!! GTTGATGATATGTTAGTAGC+AGG + chr6.2:17617844-17617863 MS.gene55542:intron 35.0%
!! TCATCATCCTTCATTGATTC+TGG - chr6.2:17615036-17615055 None:intergenic 35.0%
!!! TGGATTTTGAGGTATCTAAG+AGG + chr6.2:17618276-17618295 MS.gene55542:intron 35.0%
!!! TTTTGTTTTCATCATCCCAG+AGG - chr6.2:17616940-17616959 None:intergenic 35.0%
AAAAAGCTCAGAACCGACAA+TGG + chr6.2:17616509-17616528 MS.gene55542:intron 40.0%
AAACTTTACCAAGGTTACCG+GGG - chr6.2:17615833-17615852 None:intergenic 40.0%
AAAGGATTCCAGCAGAAAGA+AGG + chr6.2:17617463-17617482 MS.gene55542:intron 40.0%
AACTTCATATACCACTGCCT+TGG - chr6.2:17617724-17617743 None:intergenic 40.0%
AAGAAAAAGAACTCATGGCC+AGG + chr6.2:17618121-17618140 MS.gene55542:intron 40.0%
AAGTGGAAGAATCCCAAAGA+AGG + chr6.2:17616289-17616308 MS.gene55542:intron 40.0%
AAGTTGTGCTCAACTTCAGT+TGG + chr6.2:17618768-17618787 MS.gene55542:CDS 40.0%
ACTCGAAATCTATCGAGTGT+TGG + chr6.2:17615601-17615620 MS.gene55542:CDS 40.0%
AGAGGAAGAAATTCAACCAG+AGG + chr6.2:17615516-17615535 MS.gene55542:CDS 40.0%
AGCAGGTTTATGTCAAATCC+AGG + chr6.2:17618228-17618247 MS.gene55542:intron 40.0%
AGCTCAAGTTTCTCCTTCTT+TGG - chr6.2:17616305-17616324 None:intergenic 40.0%
AGGCTTACCAAAGAACTTCT+GGG + chr6.2:17616685-17616704 MS.gene55542:intron 40.0%
AGTCAATTCCTTCTTTCTGC+TGG - chr6.2:17617474-17617493 None:intergenic 40.0%
ATATACATGCACCAACCAGA+AGG + chr6.2:17617628-17617647 MS.gene55542:intron 40.0%
ATTCTGCCAATTCCTCTGAT+TGG - chr6.2:17617108-17617127 None:intergenic 40.0%
CAAAGAACAATCACCTCAGA+CGG + chr6.2:17618095-17618114 MS.gene55542:intron 40.0%
CAAATCCAGGTAAAGCTCAT+TGG + chr6.2:17618241-17618260 MS.gene55542:intron 40.0%
CAAATGGGTGTATCGAGTAA+AGG + chr6.2:17617396-17617415 MS.gene55542:intron 40.0%
CAAGGATTGTTGACAGAGTT+AGG + chr6.2:17618531-17618550 MS.gene55542:intron 40.0%
CATTCGAGAACAAAGCACAT+AGG + chr6.2:17618627-17618646 MS.gene55542:intron 40.0%
CCAGAAGGATTCTCAGAAAA+AGG + chr6.2:17617643-17617662 MS.gene55542:intron 40.0%
CGCAGATATGTTAACAAAGG+TGG + chr6.2:17618728-17618747 MS.gene55542:CDS 40.0%
CTCCAGTTCCTGAATTAAGA+AGG + chr6.2:17617167-17617186 MS.gene55542:CDS 40.0%
CTGAGAACTACGATGATTTC+TGG - chr6.2:17615580-17615599 None:intergenic 40.0%
CTTAATTCAGGAACTGGAGT+AGG - chr6.2:17617166-17617185 None:intergenic 40.0%
CTTCATCAGATCTCTTCTTG+AGG + chr6.2:17618662-17618681 MS.gene55542:intron 40.0%
CTTCCAATTGCTGAAGCATA+TGG - chr6.2:17618150-17618169 None:intergenic 40.0%
CTTGAAGAAGCAACAATGGT+CGG - chr6.2:17617788-17617807 None:intergenic 40.0%
CTTGTTCACTCTGATGTTTG+GGG + chr6.2:17616323-17616342 MS.gene55542:intron 40.0%
CTTTGATCTCCAATCAGACA+TGG + chr6.2:17617332-17617351 MS.gene55542:intron 40.0%
GAACTAGCTAAGTTACCCAA+GGG + chr6.2:17617355-17617374 MS.gene55542:intron 40.0%
GACCTTCTTAATTCAGGAAC+TGG - chr6.2:17617172-17617191 None:intergenic 40.0%
GCTCAAGTTTCTCCTTCTTT+GGG - chr6.2:17616304-17616323 None:intergenic 40.0%
GCTTGTTCACTCTGATGTTT+GGG + chr6.2:17616322-17616341 MS.gene55542:intron 40.0%
GGAGGAAGAAAAAGAACTCA+TGG + chr6.2:17618116-17618135 MS.gene55542:intron 40.0%
GGTTATGGTGAAGATGAGTT+TGG + chr6.2:17616908-17616927 MS.gene55542:intron 40.0%
GTGAAGACTGCATTTCTTCA+TGG + chr6.2:17617589-17617608 MS.gene55542:intron 40.0%
GTGTTGGAATTGTGGAAAGA+CGG + chr6.2:17615617-17615636 MS.gene55542:CDS 40.0%
GTTTGAAAGCTTCATGCACA+AGG + chr6.2:17617741-17617760 MS.gene55542:intron 40.0%
TAAGTTACCCAAGGGAAAGA+AGG + chr6.2:17617363-17617382 MS.gene55542:intron 40.0%
TAGGCCATATGAGTGAAAAG+GGG + chr6.2:17616159-17616178 MS.gene55542:intron 40.0%
TATGAGTGAAAAGGGGATGA+AGG + chr6.2:17616166-17616185 MS.gene55542:intron 40.0%
TCCCGCAGATATGTTAACAA+AGG + chr6.2:17618725-17618744 MS.gene55542:CDS 40.0%
TGACATGAAGGATTTAGGTC+CGG + chr6.2:17617918-17617937 MS.gene55542:intron 40.0%
TGGAAGTTTGATGTACGCAA+TGG + chr6.2:17618164-17618183 MS.gene55542:intron 40.0%
TGGTGAAGCTCAATACTATC+AGG + chr6.2:17617515-17617534 MS.gene55542:intron 40.0%
TGTACTCTTTACAAGACAGC+TGG + chr6.2:17616077-17616096 MS.gene55542:intron 40.0%
TGTATCTCTTAGAGCCATCA+TGG - chr6.2:17617426-17617445 None:intergenic 40.0%
TGTTGGAATTGTGGAAAGAC+GGG + chr6.2:17615618-17615637 MS.gene55542:CDS 40.0%
TTCTGCCAATTCCTCTGATT+GGG - chr6.2:17617107-17617126 None:intergenic 40.0%
TTTACACTTCGGATGACAGA+AGG + chr6.2:17615225-17615244 MS.gene55542:CDS 40.0%
TTTCAAGAGATGGAAAGCCA+TGG + chr6.2:17616460-17616479 MS.gene55542:intron 40.0%
! AAGAAGTTTTGCTACGAGCA+CGG + chr6.2:17616557-17616576 MS.gene55542:intron 40.0%
! AAGTGCACTTTCATCGGTTA+TGG + chr6.2:17616893-17616912 MS.gene55542:intron 40.0%
! ACTTGTCTCATTTTCCACCA+TGG - chr6.2:17616480-17616499 None:intergenic 40.0%
! AGCTTGTTCACTCTGATGTT+TGG + chr6.2:17616321-17616340 MS.gene55542:intron 40.0%
! ATAGTATTGAGCTTCACCAC+TGG - chr6.2:17617514-17617533 None:intergenic 40.0%
! ATGATCACTCTAGGAAGGTA+TGG + chr6.2:17616399-17616418 MS.gene55542:intron 40.0%
! ATTTCTGGATTTGGATCGTC+TGG - chr6.2:17615565-17615584 None:intergenic 40.0%
! CGGAGATTAAGTTTTTCGTG+AGG - chr6.2:17615959-17615978 None:intergenic 40.0%
! CTCAAGATAGAGATTTTCGC+TGG - chr6.2:17617560-17617579 None:intergenic 40.0%
! GAAAGTGCACTTCTTGGATT+TGG - chr6.2:17616885-17616904 None:intergenic 40.0%
! TATCGATGATCACTCTAGGA+AGG + chr6.2:17616394-17616413 MS.gene55542:intron 40.0%
! TCATCCCCTTTTCACTCATA+TGG - chr6.2:17616166-17616185 None:intergenic 40.0%
! TCCAAGAAGTGCACTTTCAT+CGG + chr6.2:17616887-17616906 MS.gene55542:intron 40.0%
! TCTGGTATTTTGTGCTCCAA+TGG - chr6.2:17616761-17616780 None:intergenic 40.0%
! TGATCACTCTAGGAAGGTAT+GGG + chr6.2:17616400-17616419 MS.gene55542:intron 40.0%
! TTTCATCTTTTTGCTTCCCG+AGG - chr6.2:17615403-17615422 None:intergenic 40.0%
! TTTCTGAGAATCCTTCTGGT+TGG - chr6.2:17617642-17617661 None:intergenic 40.0%
!! AGAAGGCACTTCACAACAAA+TGG + chr6.2:17617380-17617399 MS.gene55542:intron 40.0%
!! CCTTTTTCTGAGAATCCTTC+TGG - chr6.2:17617646-17617665 None:intergenic 40.0%
!! GAAGGCACTTCACAACAAAT+GGG + chr6.2:17617381-17617400 MS.gene55542:intron 40.0%
!! TCTATCGAGTGTTGGAATTG+TGG + chr6.2:17615609-17615628 MS.gene55542:CDS 40.0%
!! TCTGGTTTCTTTTCTGTGAG+AGG - chr6.2:17615018-17615037 None:intergenic 40.0%
AAATCTTCCAGTCATCACCG+TGG - chr6.2:17616019-17616038 None:intergenic 45.0%
AAGAGCCTTCATAAGACCAG+CGG - chr6.2:17615148-17615167 None:intergenic 45.0%
AATGCTTCCCACCAATGGAT+GGG - chr6.2:17616361-17616380 None:intergenic 45.0%
AATTATGTCCCCGGTAACCT+TGG + chr6.2:17615822-17615841 MS.gene55542:CDS 45.0%
ACTCCCAGCAAAGAATCAAG+AGG + chr6.2:17615662-17615681 MS.gene55542:CDS 45.0%
AGAGTCAGCTTTCAGACAAG+TGG + chr6.2:17616272-17616291 MS.gene55542:intron 45.0%
AGATGAGATTCCCCAATCAG+AGG + chr6.2:17617093-17617112 MS.gene55542:CDS 45.0%
AGCTAGTTCCCATGTCTGAT+TGG - chr6.2:17617344-17617363 None:intergenic 45.0%
AGGTAAAGCTCATTGGGAAG+CGG + chr6.2:17618248-17618267 MS.gene55542:intron 45.0%
ATGCAGTGGGAGTTATTAGC+AGG + chr6.2:17618211-17618230 MS.gene55542:intron 45.0%
ATGGGTGTATCGAGTAAAGG+AGG + chr6.2:17617399-17617418 MS.gene55542:intron 45.0%
ATTCACCCAACTCTCTTCGT+CGG - chr6.2:17615464-17615483 None:intergenic 45.0%
CACCACTGGAGCAAAAATCT+CGG - chr6.2:17617500-17617519 None:intergenic 45.0%
CAGATCTCTTCTTGAGGATG+AGG + chr6.2:17618668-17618687 MS.gene55542:intron 45.0%
CAGGCTTACCAAAGAACTTC+TGG + chr6.2:17616684-17616703 MS.gene55542:intron 45.0%
CGAGCCTGTTTATGTAGAGA+TGG + chr6.2:17617048-17617067 MS.gene55542:CDS 45.0%
CTCAGCTACACCATTGTGTT+GGG - chr6.2:17616615-17616634 None:intergenic 45.0%
CTCATTGGGAAGCGGTTAAA+TGG + chr6.2:17618256-17618275 MS.gene55542:intron 45.0%
CTGGCACAGTTCTTTCCATT+CGG - chr6.2:17616586-17616605 None:intergenic 45.0%
CTTAATCAACCGAGGTCCAT+CGG + chr6.2:17616733-17616752 MS.gene55542:intron 45.0%
GAAAGCTTCATGCACAAGGA+AGG + chr6.2:17617745-17617764 MS.gene55542:intron 45.0%
GAAGTAATGCTTCCCACCAA+TGG - chr6.2:17616366-17616385 None:intergenic 45.0%
GAATCAAGAGGCGAAAGATG+AGG + chr6.2:17615674-17615693 MS.gene55542:CDS 45.0%
GAATCCTTTGACCACTAGTC+GGG - chr6.2:17617452-17617471 None:intergenic 45.0%
GACAGAGTTAGGATTCATGC+AGG + chr6.2:17618542-17618561 MS.gene55542:intron 45.0%
GAGGTGATTGTTCTTTGGCT+AGG - chr6.2:17618092-17618111 None:intergenic 45.0%
GATTCCCCAATCAGAGGAAT+TGG + chr6.2:17617099-17617118 MS.gene55542:CDS 45.0%
GATTGGGGAATCTCATCTGT+GGG - chr6.2:17617091-17617110 None:intergenic 45.0%
GGAAAGAGAATATGGTGTGC+AGG + chr6.2:17617665-17617684 MS.gene55542:intron 45.0%
GGAACTAGCTAAGTTACCCA+AGG + chr6.2:17617354-17617373 MS.gene55542:intron 45.0%
GGAATCCTTTGACCACTAGT+CGG - chr6.2:17617453-17617472 None:intergenic 45.0%
GGAGCACAAAATACCAGAAG+AGG + chr6.2:17616763-17616782 MS.gene55542:intron 45.0%
GGTCCGGCAAAGAAAATTCT+TGG + chr6.2:17617934-17617953 MS.gene55542:intron 45.0%
GGTTACACAACAGTCTTCCA+CGG + chr6.2:17615999-17616018 MS.gene55542:intron 45.0%
GTAGAGATGGATGATGTTCC+AGG + chr6.2:17617061-17617080 MS.gene55542:CDS 45.0%
TAATGCTTCCCACCAATGGA+TGG - chr6.2:17616362-17616381 None:intergenic 45.0%
TACATACTCAGCCTCTGTAG+TGG - chr6.2:17618475-17618494 None:intergenic 45.0%
TACGTAGATGCAGACTTTGC+TGG + chr6.2:17618351-17618370 MS.gene55542:intron 45.0%
TAGTCAGAGTGCGATACATC+TGG + chr6.2:17618587-17618606 MS.gene55542:intron 45.0%
TCAGCCTACTTAATCAACCG+AGG + chr6.2:17616725-17616744 MS.gene55542:intron 45.0%
TCAGCTACACCATTGTGTTG+GGG - chr6.2:17616614-17616633 None:intergenic 45.0%
TCGCCTCTTGATTCTTTGCT+GGG - chr6.2:17615668-17615687 None:intergenic 45.0%
TCTGCCAATTCCTCTGATTG+GGG - chr6.2:17617106-17617125 None:intergenic 45.0%
TGAGGCGGTTGTTTACACTT+CGG + chr6.2:17615214-17615233 MS.gene55542:CDS 45.0%
TGATGAAGCATGTCAGACCA+CGG + chr6.2:17617267-17617286 MS.gene55542:CDS 45.0%
TGATTGGGGAATCTCATCTG+TGG - chr6.2:17617092-17617111 None:intergenic 45.0%
TGCTGAAGCATATGGAATCC+TGG - chr6.2:17618142-17618161 None:intergenic 45.0%
TGGACCTCGGTTGATTAAGT+AGG - chr6.2:17616732-17616751 None:intergenic 45.0%
TGTCTTCCCTACCAGATAGT+TGG + chr6.2:17615349-17615368 MS.gene55542:CDS 45.0%
TTCGCCTCTTGATTCTTTGC+TGG - chr6.2:17615669-17615688 None:intergenic 45.0%
TTTACCACGTCCATTTCCTC+TGG - chr6.2:17615535-17615554 None:intergenic 45.0%
TTTCCACTCCATACCTCTTC+TGG - chr6.2:17616779-17616798 None:intergenic 45.0%
! ACCGATGAAAGTGCACTTCT+TGG - chr6.2:17616891-17616910 None:intergenic 45.0%
! AGAAGTTTTGCTACGAGCAC+GGG + chr6.2:17616558-17616577 MS.gene55542:intron 45.0%
! AGAGGTATGGAGTGGAAAAG+AGG + chr6.2:17616781-17616800 MS.gene55542:intron 45.0%
! AGGCGAAAATGACTTGCCAA+CGG - chr6.2:17618072-17618091 None:intergenic 45.0%
! ATACCAGAAGAGGTATGGAG+TGG + chr6.2:17616773-17616792 MS.gene55542:intron 45.0%
! CCATACATTGGCTATGCAGT+GGG + chr6.2:17618198-17618217 MS.gene55542:intron 45.0%
! CGTCTGAGGTGATTGTTCTT+TGG - chr6.2:17618097-17618116 None:intergenic 45.0%
! GATATGCTCTTTGGAGAGCA+AGG + chr6.2:17615734-17615753 MS.gene55542:CDS 45.0%
! GATCACCGAAGAAGTACAAC+TGG + chr6.2:17618381-17618400 MS.gene55542:intron 45.0%
! TCTTTTTCTTCCTCCGTCTG+AGG - chr6.2:17618111-17618130 None:intergenic 45.0%
! TGAAGTGCCTTCTTTCCCTT+GGG - chr6.2:17617373-17617392 None:intergenic 45.0%
! TGACGCGTTGATATGCTCTT+TGG + chr6.2:17615725-17615744 MS.gene55542:CDS 45.0%
! TGTTTTCATCATCCCAGAGG+CGG - chr6.2:17616937-17616956 None:intergenic 45.0%
! TTGGTACTGGAGCAGTTAGT+TGG + chr6.2:17618418-17618437 MS.gene55542:intron 45.0%
!! TGTCGCTTTATCCACTACAG+AGG + chr6.2:17618461-17618480 MS.gene55542:intron 45.0%
AAAGCCCGACTAGTGGTCAA+AGG + chr6.2:17617445-17617464 MS.gene55542:intron 50.0%
AACACAACCACCAACGACTC+AGG + chr6.2:17617019-17617038 MS.gene55542:CDS 50.0%
AAGCTCAGAACCGACAATGG+TGG + chr6.2:17616512-17616531 MS.gene55542:intron 50.0%
AAGTTCGATGGTGCGGACTT+TGG + chr6.2:17614940-17614959 MS.gene55542:CDS 50.0%
AATGGTCGGCATTGCACTTC+TGG - chr6.2:17617774-17617793 None:intergenic 50.0%
ACAACAGTCCCATCCATTGG+TGG + chr6.2:17616350-17616369 MS.gene55542:intron 50.0%
ACAGTAGCGCTCCAACTATC+TGG - chr6.2:17615363-17615382 None:intergenic 50.0%
AGAACAATCACCTCAGACGG+AGG + chr6.2:17618098-17618117 MS.gene55542:intron 50.0%
AGACCACGGATGCTAGTAAG+TGG + chr6.2:17617281-17617300 MS.gene55542:intron 50.0%
AGAGATCCGACGAAGAGAGT+TGG + chr6.2:17615455-17615474 MS.gene55542:CDS 50.0%
AGAGTGCGATACATCTGGCA+AGG + chr6.2:17618592-17618611 MS.gene55542:intron 50.0%
AGCGCTCCAACTATCTGGTA+GGG - chr6.2:17615358-17615377 None:intergenic 50.0%
ATCTCATCTGTGGGACTTCC+TGG - chr6.2:17617082-17617101 None:intergenic 50.0%
ATGGCCTGAAACAAGCTCCA+AGG + chr6.2:17617704-17617723 MS.gene55542:intron 50.0%
CAACAGTCCCATCCATTGGT+GGG + chr6.2:17616351-17616370 MS.gene55542:intron 50.0%
CAAGAGATGGAAAGCCATGG+TGG + chr6.2:17616463-17616482 MS.gene55542:intron 50.0%
CAAGTGCTTGTCTGTCGAGA+AGG - chr6.2:17615065-17615084 None:intergenic 50.0%
CCAACAACAGTCCCATCCAT+TGG + chr6.2:17616347-17616366 MS.gene55542:intron 50.0%
CCAATGGATGGGACTGTTGT+TGG - chr6.2:17616350-17616369 None:intergenic 50.0%
CCCACTGCATAGCCAATGTA+TGG - chr6.2:17618201-17618220 None:intergenic 50.0%
CGAATGGAAAGAACTGTGCC+AGG + chr6.2:17616584-17616603 MS.gene55542:intron 50.0%
CGAGTAAAGGAGGACCATGA+TGG + chr6.2:17617409-17617428 MS.gene55542:intron 50.0%
CTTAATCTCCGTAGGCCAGT+TGG + chr6.2:17615968-17615987 MS.gene55542:intron 50.0%
CTTCTCGACAGACAAGCACT+TGG + chr6.2:17615063-17615082 MS.gene55542:CDS 50.0%
GACCACGGATGCTAGTAAGT+GGG + chr6.2:17617282-17617301 MS.gene55542:intron 50.0%
GAGATACAAAGCCCGACTAG+TGG + chr6.2:17617438-17617457 MS.gene55542:intron 50.0%
GAGATCCGACGAAGAGAGTT+GGG + chr6.2:17615456-17615475 MS.gene55542:CDS 50.0%
GAGTCTTGGGTGTTAGACTC+TGG + chr6.2:17615759-17615778 MS.gene55542:CDS 50.0%
GCAAAAGAGAAAACCACCGC+TGG + chr6.2:17615129-17615148 MS.gene55542:CDS 50.0%
GCTCAGCTACACCATTGTGT+TGG - chr6.2:17616616-17616635 None:intergenic 50.0%
GCTTCCCAATGAGCTTTACC+TGG - chr6.2:17618249-17618268 None:intergenic 50.0%
GCTTCTGCCCAGAAGTTCTT+TGG - chr6.2:17616695-17616714 None:intergenic 50.0%
GGAGAGCAAGGAAGAGTCTT+GGG + chr6.2:17615746-17615765 MS.gene55542:CDS 50.0%
GTCTGTACGAGGCCATACAT+TGG + chr6.2:17618186-17618205 MS.gene55542:intron 50.0%
TAGCGCTCCAACTATCTGGT+AGG - chr6.2:17615359-17615378 None:intergenic 50.0%
TCAACCAGAGGAAATGGACG+TGG + chr6.2:17615528-17615547 MS.gene55542:CDS 50.0%
TGAAACAAGCTCCAAGGCAG+TGG + chr6.2:17617710-17617729 MS.gene55542:intron 50.0%
TGGAGAGCAAGGAAGAGTCT+TGG + chr6.2:17615745-17615764 MS.gene55542:CDS 50.0%
TGTAACCTTCGTCAGCCAAC+TGG - chr6.2:17615986-17616005 None:intergenic 50.0%
TGTACGCAATGGTCTGTACG+AGG + chr6.2:17618175-17618194 MS.gene55542:intron 50.0%
! AATGTTGCTTCCACCTCAGG+AGG + chr6.2:17615699-17615718 MS.gene55542:CDS 50.0%
! ACTGCCTTGGAGCTTGTTTC+AGG - chr6.2:17617711-17617730 None:intergenic 50.0%
! CACCGAGATTTTTGCTCCAG+TGG + chr6.2:17617495-17617514 MS.gene55542:intron 50.0%
! GCAAATGTTGCTTCCACCTC+AGG + chr6.2:17615696-17615715 MS.gene55542:CDS 50.0%
! GCCATACATTGGCTATGCAG+TGG + chr6.2:17618197-17618216 MS.gene55542:intron 50.0%
! GTGAAGTGCCTTCTTTCCCT+TGG - chr6.2:17617374-17617393 None:intergenic 50.0%
!! AACCACCGCTGGTCTTATGA+AGG + chr6.2:17615140-17615159 MS.gene55542:CDS 50.0%
!!! ATGGTGCGGACTTTGGCTTT+TGG + chr6.2:17614947-17614966 MS.gene55542:CDS 50.0%
ACAGCTGTGAGTAGCTCCTC+GGG + chr6.2:17615384-17615403 MS.gene55542:CDS 55.0%
AGAAGCTTGCGTGTGCAGTC+AGG + chr6.2:17616665-17616684 MS.gene55542:intron 55.0%
AGCCTTCATAAGACCAGCGG+TGG - chr6.2:17615145-17615164 None:intergenic 55.0%
ATGAGTTTGGCTACCGCCTC+TGG + chr6.2:17616921-17616940 MS.gene55542:intron 55.0%
CAAACCGGTTAGCACACCGT+TGG + chr6.2:17618053-17618072 MS.gene55542:intron 55.0%
CAACATGGGCGATGCCAAAC+CGG + chr6.2:17618038-17618057 MS.gene55542:intron 55.0%
CAACGGTGTGCTAACCGGTT+TGG - chr6.2:17618055-17618074 None:intergenic 55.0%
CACAGCTGTGAGTAGCTCCT+CGG + chr6.2:17615383-17615402 MS.gene55542:CDS 55.0%
CAGTCTTCCACGGTGATGAC+TGG + chr6.2:17616009-17616028 MS.gene55542:intron 55.0%
CCAGGTACTCCCCAACACAA+TGG + chr6.2:17616602-17616621 MS.gene55542:intron 55.0%
CTCCCACTTACTAGCATCCG+TGG - chr6.2:17617287-17617306 None:intergenic 55.0%
CTCGCTCAATCCTGAGTCGT+TGG - chr6.2:17617032-17617051 None:intergenic 55.0%
CTTGCCAACGGTGTGCTAAC+CGG - chr6.2:17618060-17618079 None:intergenic 55.0%
GCTCAATCCTGAGTCGTTGG+TGG - chr6.2:17617029-17617048 None:intergenic 55.0%
GGAACTGGAGTAGGATGCAC+TGG - chr6.2:17617157-17617176 None:intergenic 55.0%
GGTGCAATGACGATAGCTCG+CGG + chr6.2:17616044-17616063 MS.gene55542:intron 55.0%
TGACTGCACACGCAAGCTTC+TGG - chr6.2:17616666-17616685 None:intergenic 55.0%
TGAGTTTGGCTACCGCCTCT+GGG + chr6.2:17616922-17616941 MS.gene55542:intron 55.0%
! GATGACAGAAGGCGCATCAG+TGG + chr6.2:17615236-17615255 MS.gene55542:CDS 55.0%
! GGATGCACTGGTGTGTCAGA+CGG - chr6.2:17617145-17617164 None:intergenic 55.0%
! TTCGTCAGCCAACTGGCCTA+CGG - chr6.2:17615979-17615998 None:intergenic 55.0%
! TTGTGCTCCAATGGCACCGA+TGG - chr6.2:17616752-17616771 None:intergenic 55.0%
!! CCATTGTGTTGGGGAGTACC+TGG - chr6.2:17616605-17616624 None:intergenic 55.0%
CTACGAGCACGGGATCCGAA+TGG + chr6.2:17616568-17616587 MS.gene55542:intron 60.0%
GTAGGCCAGTTGGCTGACGA+AGG + chr6.2:17615978-17615997 MS.gene55542:intron 60.0%
GTTGCTTCCACCTCAGGAGG+AGG + chr6.2:17615702-17615721 MS.gene55542:CDS 60.0%
!! CCAATGGCACCGATGGACCT+CGG - chr6.2:17616745-17616764 None:intergenic 60.0%
CAACGCGTCACCTCCTCCTG+AGG - chr6.2:17615715-17615734 None:intergenic 65.0%
!! CCGAGGTCCATCGGTGCCAT+TGG + chr6.2:17616742-17616761 MS.gene55542:intron 65.0%
CGCGTCACCTCCTCCTGAGG+TGG - chr6.2:17615712-17615731 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 17614907 17618803 17614907 ID=MS.gene55542
chr6.2 mRNA 17614907 17618803 17614907 ID=MS.gene55542.t1;Parent=MS.gene55542
chr6.2 exon 17614907 17615916 17614907 ID=MS.gene55542.t1.exon1;Parent=MS.gene55542.t1
chr6.2 CDS 17614907 17615916 17614907 ID=cds.MS.gene55542.t1;Parent=MS.gene55542.t1
chr6.2 exon 17617015 17617295 17617015 ID=MS.gene55542.t1.exon2;Parent=MS.gene55542.t1
chr6.2 CDS 17617015 17617295 17617015 ID=cds.MS.gene55542.t1;Parent=MS.gene55542.t1
chr6.2 exon 17618715 17618803 17618715 ID=MS.gene55542.t1.exon3;Parent=MS.gene55542.t1
chr6.2 CDS 17618715 17618803 17618715 ID=cds.MS.gene55542.t1;Parent=MS.gene55542.t1
Gene Sequence

>MS.gene55542

ATGGCTGTAGACGAAGGAAAGGTGAAAATTGAAAAGTTCGATGGTGCGGACTTTGGCTTTTGGAAGATGCAGATCGAAGATTATTTGTATCAGAAAAAGCTACATCAACCTCTCACAGAAAAGAAACCAGAATCAATGAAGGATGATGAGTGGAACCTTCTCGACAGACAAGCACTTGGTGTTGTGCGATTGTCGTTATCTCGAAATGTTGCTTTTAACATAGCAAAAGAGAAAACCACCGCTGGTCTTATGAAGGCTCTTTCTAGCATGTACGAAAAGCCTTCAGCATCAAATAAAGTTCATTTGATGAGGCGGTTGTTTACACTTCGGATGACAGAAGGCGCATCAGTGGCGCAACATATCAATGAACTTAATATTGTCACAACCCAATTAAGTTCAGTTGGTATTGAATTTGACGATGAGGTACGAGCATTGATACTTTTGTCTTCCCTACCAGATAGTTGGAGCGCTACTGTCACAGCTGTGAGTAGCTCCTCGGGAAGCAAAAAGATGAAATTTGATGATGTTCGTGATCTGGTTCTCAGTGAAGAGATCCGACGAAGAGAGTTGGGTGAATCTTCATCCTCTTCAGTATTGCATATAGAGTCAAGAGGAAGAAATTCAACCAGAGGAAATGGACGTGGTAAATCAAAGGCCAGACGATCCAAATCCAGAAATCATCGTAGTTCTCAGAACTCGAAATCTATCGAGTGTTGGAATTGTGGAAAGACGGGACACTTCAAAAATCAGTGTAGACTCCCAGCAAAGAATCAAGAGGCGAAAGATGAGGCAAATGTTGCTTCCACCTCAGGAGGAGGTGACGCGTTGATATGCTCTTTGGAGAGCAAGGAAGAGTCTTGGGTGTTAGACTCTGGAGCGTCTTTTCATGCTACTTCCCAGAAAGAAATCTTCAAGAATTATGTCCCCGGTAACCTTGGTAAAGTTTACCTTGGAAATGAACAATCTTGTAAGGTTGTGGGCAAAGATGAAGTTAAGATTAAGTTAAATGGGTCTGTATGGGAATTGAAAAATGTCAGACATATTCCCGACCTCACGAAAAACTTAATCTCCGTAGGCCAGTTGGCTGACGAAGGTTACACAACAGTCTTCCACGGTGATGACTGGAAGATTTCAAAAGGTGCAATGACGATAGCTCGCGGTAGAAAGAGTTGTACTCTTTACAAGACAGCTGGAGCATGCCATTTGATTGCAGTTGCAACAAATGAAAATCCTAATCTATGGCACAAGAGATTAGGCCATATGAGTGAAAAGGGGATGAAGGTTATGCACTCAAAAGGAAAACTACCAAGTCTTCGGTCAATAGAAATTGACATATGTGAAGACTGTATACTTGGAAAGCAGAAGAGAGTCAGCTTTCAGACAAGTGGAAGAATCCCAAAGAAGGAGAAACTTGAGCTTGTTCACTCTGATGTTTGGGGTCCAACAACAGTCCCATCCATTGGTGGGAAGCATTACTTCGTGACTTTTATCGATGATCACTCTAGGAAGGTATGGGTATACTTTCTGAAGCATAAGTCTGAAGTATTTGAAGCTTTCAAGAGATGGAAAGCCATGGTGGAAAATGAGACAAGTTTGAAGATCAAAAAGCTCAGAACCGACAATGGTGGTGAATATGAAGACACCAAATTCAAGAAGTTTTGCTACGAGCACGGGATCCGAATGGAAAGAACTGTGCCAGGTACTCCCCAACACAATGGTGTAGCTGAGCGTATGAATAGAACATTGACTGAGAGAGCCAGAAGCTTGCGTGTGCAGTCAGGCTTACCAAAGAACTTCTGGGCAGAAGCAGTCAACACATCAGCCTACTTAATCAACCGAGGTCCATCGGTGCCATTGGAGCACAAAATACCAGAAGAGGTATGGAGTGGAAAAGAGGTAAAACTCTCACATCTTAGAGTTTTCGGTTGTGTAGCATATGTGCATATTAGTGATCAAGGTAGAAATAAACTTGATCCCAAATCCAAGAAGTGCACTTTCATCGGTTATGGTGAAGATGAGTTTGGCTACCGCCTCTGGGATGATGAAAACAAAAAGATGGTTCGTAGTAGAGATGTGATCTTCAATGAAAGAGTGATGTACAAAGACAGGCATAACACAACCACCAACGACTCAGGATTGAGCGAGCCTGTTTATGTAGAGATGGATGATGTTCCAGGAAGTCCCACAGATGAGATTCCCCAATCAGAGGAATTGGCAGAATCAAGCATCAGACAACCGTCTGACACACCAGTGCATCCTACTCCAGTTCCTGAATTAAGAAGGTCTTCTAGACTTCGTGTTCCAAACAGCAGATACATAAACTACATGTTGTTAACTGATGGAGGAGAGCCTGAAGATTATGATGAAGCATGTCAGACCACGGATGCTAGTAAGTGGGAGCTTGCCATGAAAGACGAAATGAAGTCTTTGATCTCCAATCAGACATGGGAACTAGCTAAGTTACCCAAGGGAAAGAAGGCACTTCACAACAAATGGGTGTATCGAGTAAAGGAGGACCATGATGGCTCTAAGAGATACAAAGCCCGACTAGTGGTCAAAGGATTCCAGCAGAAAGAAGGAATTGACTACACCGAGATTTTTGCTCCAGTGGTGAAGCTCAATACTATCAGGTCTGTCTTAAGTATTGTTGCCAGCGAAAATCTCTATCTTGAGCAGTTAGATGTGAAGACTGCATTTCTTCATGGAGACTTAAATGAGGAGATATACATGCACCAACCAGAAGGATTCTCAGAAAAAGGGAAAGAGAATATGGTGTGCAGGTTAAAGAAGAGCTTGTATGGCCTGAAACAAGCTCCAAGGCAGTGGTATATGAAGTTTGAAAGCTTCATGCACAAGGAAGGTTTCCAGAAGTGCAATGCCGACCATTGTTGCTTCTTCAAGAGATATAAGTCAAGTTATATCATTTTGCTACTTTATGTTGATGATATGTTAGTAGCAGGCTCAGACATTGATGAGATTAAAAACTTGAAGATGCAATTGTCAAAAGAATTTGACATGAAGGATTTAGGTCCGGCAAAGAAAATTCTTGGTATGCAAATCACGAGAGATAAGCAAAAAGGAGTTTTGCAGATATCTCAAGCAGAGTACATCAACCGTGTTTTGCAAAGATTCAACATGGGCGATGCCAAACCGGTTAGCACACCGTTGGCAAGTCATTTTCGCCTAGCCAAAGAACAATCACCTCAGACGGAGGAAGAAAAAGAACTCATGGCCAGGATTCCATATGCTTCAGCAATTGGAAGTTTGATGTACGCAATGGTCTGTACGAGGCCATACATTGGCTATGCAGTGGGAGTTATTAGCAGGTTTATGTCAAATCCAGGTAAAGCTCATTGGGAAGCGGTTAAATGGATTTTGAGGTATCTAAGAGGCACCACAGAGAAATGTTTGTACTTCAGCAAAGGAGAGATAAAAGTAGAAGGCTACGTAGATGCAGACTTTGCTGGTGAAGTTGATCACCGAAGAAGTACAACTGGTTATATATTTACTGTTGGTACTGGAGCAGTTAGTTGGATGTCGCGAATACAAAAGATTGTCGCTTTATCCACTACAGAGGCTGAGTATGTAGCAGTAACAGAAGCTAGCAAAGAATTGATATGGCTTCAAGGATTGTTGACAGAGTTAGGATTCATGCAGGAGAAATGTGCTTTGTACAGTGATAGTCAGAGTGCGATACATCTGGCAAGGAATTCAGCATTTCATTCGAGAACAAAGCACATAGGTCTTCGTTATCACTTCATCAGATCTCTTCTTGAGGATGAGGTTCTAACATTGATCAAAATTCAAGGAAGTAAGAATCCCGCAGATATGTTAACAAAGGTGGTGACTATCGACAAACTGAAGTTGTGCTCAACTTCAGTTGGCCTGTTAGAATAA
Protein sequence

>MS.gene55542.t1

MAVDEGKVKIEKFDGADFGFWKMQIEDYLYQKKLHQPLTEKKPESMKDDEWNLLDRQALGVVRLSLSRNVAFNIAKEKTTAGLMKALSSMYEKPSASNKVHLMRRLFTLRMTEGASVAQHINELNIVTTQLSSVGIEFDDEVRALILLSSLPDSWSATVTAVSSSSGSKKMKFDDVRDLVLSEEIRRRELGESSSSSVLHIESRGRNSTRGNGRGKSKARRSKSRNHRSSQNSKSIECWNCGKTGHFKNQCRLPAKNQEAKDEANVASTSGGGDALICSLESKEESWVLDSGASFHATSQKEIFKNYVPGNLGKVYLGNEQSCKVVGKDEVKIKLNGHNTTTNDSGLSEPVYVEMDDVPGSPTDEIPQSEELAESSIRQPSDTPVHPTPVPELRRSSRLRVPNSRYINYMLLTDGGEPEDYDEACQTTDARSKNPADMLTKVVTIDKLKLCSTSVGLLE