Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55864.t1 | XP_024629584.1 | 91.2 | 1117 | 32 | 3 | 1 | 1054 | 1 | 1114 | 0.00E+00 | 1960.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55864.t1 | F4JRF5 | 47.9 | 1108 | 464 | 20 | 3 | 1050 | 62 | 1116 | 9.5e-256 | 884.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55864.t1 | A0A396GXJ1 | 91.2 | 1117 | 32 | 3 | 1 | 1054 | 1 | 1114 | 0.0e+00 | 1960.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55864.t1 | TR | DDT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056296 | MS.gene55864 | 0.808952 | 2.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55864.t1 | MTR_4g078860 | 26.087 | 1012 | 523 | 25 | 238 | 1037 | 459 | 1457 | 1.61e-68 | 252 |
| MS.gene55864.t1 | MTR_4g078860 | 26.087 | 1012 | 523 | 25 | 238 | 1037 | 485 | 1483 | 1.81e-68 | 252 |
| MS.gene55864.t1 | MTR_4g078860 | 26.087 | 1012 | 523 | 25 | 238 | 1037 | 485 | 1483 | 2.68e-68 | 251 |
| MS.gene55864.t1 | MTR_4g078860 | 25.789 | 919 | 473 | 24 | 238 | 960 | 485 | 1390 | 9.44e-58 | 218 |
| MS.gene55864.t1 | MTR_2g014490 | 26.812 | 552 | 307 | 18 | 575 | 1038 | 967 | 1509 | 6.42e-41 | 165 |
| MS.gene55864.t1 | MTR_2g014490 | 32.544 | 338 | 172 | 7 | 238 | 521 | 508 | 843 | 8.38e-39 | 158 |
| MS.gene55864.t1 | MTR_2g014490 | 26.812 | 552 | 307 | 18 | 575 | 1038 | 955 | 1497 | 7.53e-41 | 164 |
| MS.gene55864.t1 | MTR_2g014490 | 33.436 | 326 | 173 | 6 | 238 | 521 | 508 | 831 | 1.20e-40 | 164 |
| MS.gene55864.t1 | MTR_4g088375 | 33.129 | 326 | 174 | 6 | 238 | 521 | 201 | 524 | 9.63e-39 | 157 |
| MS.gene55864.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 698 | 1041 | 824 | 1183 | 2.23e-35 | 147 |
| MS.gene55864.t1 | MTR_4g088375 | 33.129 | 326 | 174 | 6 | 238 | 521 | 420 | 743 | 1.29e-38 | 157 |
| MS.gene55864.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 698 | 1041 | 1043 | 1402 | 2.91e-35 | 146 |
| MS.gene55864.t1 | MTR_4g088375 | 33.129 | 326 | 174 | 6 | 238 | 521 | 420 | 743 | 1.29e-38 | 157 |
| MS.gene55864.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 698 | 1041 | 1043 | 1402 | 2.96e-35 | 146 |
| MS.gene55864.t1 | MTR_4g088375 | 33.129 | 326 | 174 | 6 | 238 | 521 | 454 | 777 | 1.38e-38 | 157 |
| MS.gene55864.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 698 | 1041 | 1077 | 1436 | 3.13e-35 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55864.t1 | AT4G12750 | 49.907 | 1078 | 483 | 20 | 3 | 1055 | 62 | 1107 | 0.0 | 909 |
| MS.gene55864.t1 | AT5G44180 | 24.319 | 1028 | 569 | 27 | 193 | 1037 | 403 | 1404 | 1.96e-57 | 218 |
| MS.gene55864.t1 | AT5G44180 | 24.319 | 1028 | 569 | 27 | 193 | 1037 | 403 | 1404 | 1.96e-57 | 218 |
| MS.gene55864.t1 | AT5G44180 | 28.172 | 536 | 278 | 11 | 193 | 621 | 403 | 938 | 1.76e-45 | 179 |
| MS.gene55864.t1 | AT1G28420 | 31.054 | 351 | 184 | 4 | 220 | 521 | 469 | 810 | 2.12e-40 | 163 |
| MS.gene55864.t1 | AT1G28420 | 25.947 | 528 | 300 | 15 | 576 | 1037 | 927 | 1429 | 4.88e-29 | 126 |
Find 250 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTCAATGTTGTAAAATA+TGG | 0.202993 | 4.3:-3780370 | MS.gene55864:CDS |
| ACTGGTGAAGAAATTATTTA+AGG | 0.222533 | 4.3:-3785505 | MS.gene55864:intron |
| ATTCTCAAAGTTCCATATTC+AGG | 0.230563 | 4.3:-3781132 | MS.gene55864:CDS |
| AATAATTTCTTCACCAGTTC+CGG | 0.234217 | 4.3:+3785510 | None:intergenic |
| AAGAATATGATTCTTGGATT+TGG | 0.235976 | 4.3:-3780408 | MS.gene55864:CDS |
| TGTAGCAGCGGAGATGATTT+TGG | 0.243573 | 4.3:-3781699 | MS.gene55864:CDS |
| CAATAGATATTGGCTCTTCT+TGG | 0.244534 | 4.3:-3781030 | MS.gene55864:CDS |
| AGCAAGTTCACATTTGTCTA+TGG | 0.244761 | 4.3:+3785971 | None:intergenic |
| CCAAGGATGCCTCCTGAATA+TGG | 0.244836 | 4.3:+3781120 | None:intergenic |
| TTGCTCCAGAACCACGTAAT+TGG | 0.252545 | 4.3:+3781249 | None:intergenic |
| CACCCTTGATGAGTTTGTTC+AGG | 0.254312 | 4.3:-3784121 | MS.gene55864:CDS |
| GGCTCTTCTTATTGAATCTT+TGG | 0.257861 | 4.3:-3780677 | MS.gene55864:CDS |
| AGGATTAAGGTTAGCAATAT+TGG | 0.270918 | 4.3:-3780619 | MS.gene55864:CDS |
| GGTGCTTTCATATTACTATT+AGG | 0.271835 | 4.3:+3786471 | None:intergenic |
| CTTCATCTGCCCTTGCTCTA+TGG | 0.275915 | 4.3:-3779039 | MS.gene55864:CDS |
| TGCCATAATTGCTCCTTATC+TGG | 0.277154 | 4.3:-3779002 | MS.gene55864:CDS |
| CAGATCTATGTCCAGGATTA+AGG | 0.279095 | 4.3:-3780632 | MS.gene55864:CDS |
| AAGAGGAACAACTGCGTAAA+TGG | 0.286345 | 4.3:-3780441 | MS.gene55864:CDS |
| GTGTGCTTTGTTGTCAGTTC+TGG | 0.293615 | 4.3:-3780719 | MS.gene55864:CDS |
| TTCTTCATCTTGACAGCACC+TGG | 0.298444 | 4.3:+3785564 | None:intergenic |
| AACATTGAGATCTAAATAAA+AGG | 0.299289 | 4.3:+3780381 | None:intergenic |
| GAATTTGATTCTCTTCCTTC+AGG | 0.300207 | 4.3:-3788149 | MS.gene55864:intron |
| GAGCAAGGGCAGATGAAGTA+TGG | 0.305207 | 4.3:+3779044 | None:intergenic |
| TGTAATGTAGCTTTCTTATT+CGG | 0.311170 | 4.3:+3786144 | None:intergenic |
| GTGTTCAAGAATATGATTCT+TGG | 0.311627 | 4.3:-3780414 | MS.gene55864:CDS |
| TTGGATATTCTTGTAAACTA+TGG | 0.315501 | 4.3:-3782102 | MS.gene55864:CDS |
| GAAAAGGTCTAATGACAATT+TGG | 0.318367 | 4.3:-3786428 | MS.gene55864:CDS |
| AGTATCCAATTACGTGGTTC+TGG | 0.329237 | 4.3:-3781254 | MS.gene55864:CDS |
| TTCCCTGTGACTTCTGAGTT+TGG | 0.334695 | 4.3:+3778972 | None:intergenic |
| GTCCAGATAAGGAGCAATTA+TGG | 0.335431 | 4.3:+3779000 | None:intergenic |
| AGAGACCTTCCAATCAGTTT+TGG | 0.337761 | 4.3:-3786384 | MS.gene55864:CDS |
| AGTGTGGTTGTTAGGACTTA+TGG | 0.344657 | 4.3:-3781565 | MS.gene55864:CDS |
| AATGCATTGGCAGCGTTAAC+TGG | 0.345838 | 4.3:-3781504 | MS.gene55864:CDS |
| TTAACTGGTCTTCTTTCATC+TGG | 0.353730 | 4.3:-3781489 | MS.gene55864:CDS |
| ATTGAAGTGGAGCTTTCTAA+TGG | 0.363027 | 4.3:-3783920 | MS.gene55864:CDS |
| AACTCGCACTTCAAGGTTCC+AGG | 0.363354 | 4.3:+3782072 | None:intergenic |
| TTTCAGGACTCGATGTTACT+TGG | 0.367636 | 4.3:-3783983 | MS.gene55864:intron |
| CAGCATATGTATAGATGAAA+TGG | 0.370973 | 4.3:+3784166 | None:intergenic |
| GGAAGTCTGCTCATAATCTA+TGG | 0.379958 | 4.3:-3779319 | MS.gene55864:CDS |
| GCAGGAGAAGTGTGGTTGTT+AGG | 0.381199 | 4.3:-3781573 | MS.gene55864:CDS |
| TTACAATTCTGCTTCTCAAC+AGG | 0.382860 | 4.3:-3786817 | MS.gene55864:CDS |
| TGTGACCTGTTGACCGATAT+CGG | 0.384687 | 4.3:+3786318 | None:intergenic |
| TTTCATCTGGATCCAGCATC+AGG | 0.385104 | 4.3:-3781476 | MS.gene55864:CDS |
| TCGAAAACGTAAAAGTCTTC+AGG | 0.386293 | 4.3:-3788240 | MS.gene55864:CDS |
| ACCTATACATTTGCAACCTT+GGG | 0.391264 | 4.3:-3785541 | MS.gene55864:CDS |
| TGCATTGCAGTTGTTCGATT+GGG | 0.396034 | 4.3:+3781207 | None:intergenic |
| AATAGATATTGGCTCTTCTT+GGG | 0.396568 | 4.3:-3781029 | MS.gene55864:CDS |
| GAATGATGATGCTCCTACTC+TGG | 0.397936 | 4.3:-3788177 | MS.gene55864:CDS |
| GATGGCAAGACTTTATGATT+TGG | 0.398381 | 4.3:+3780172 | None:intergenic |
| GTGCTGGTAGCTGCTGGATT+CGG | 0.400106 | 4.3:-3783675 | MS.gene55864:CDS |
| GAATAAGAAAGCTACATTAC+AGG | 0.400381 | 4.3:-3786142 | MS.gene55864:CDS |
| GATCTCTAAATCCTCTTACT+TGG | 0.400973 | 4.3:-3783716 | MS.gene55864:CDS |
| CTCATAATCTATGGATCAAA+AGG | 0.402900 | 4.3:-3779310 | MS.gene55864:CDS |
| AACCTATACATTTGCAACCT+TGG | 0.406843 | 4.3:-3785542 | MS.gene55864:CDS |
| AAGGTTAGCAATATTGGAAT+GGG | 0.407795 | 4.3:-3780613 | MS.gene55864:CDS |
| CTCTAGTTCCTCCGTTGTGC+TGG | 0.414272 | 4.3:+3781887 | None:intergenic |
| GCACCAACCAGGGCATCTTC+AGG | 0.414358 | 4.3:+3779347 | None:intergenic |
| TAGACGCACCTCAACTTTAG+TGG | 0.415498 | 4.3:-3779285 | MS.gene55864:CDS |
| TTGGGACTCCTCCCCGGAAC+TGG | 0.417027 | 4.3:-3785523 | MS.gene55864:CDS |
| GTTGGTTCTGAGTTGCATAC+TGG | 0.418727 | 4.3:+3785997 | None:intergenic |
| TCTTTGAAAGGCACCTTGCT+TGG | 0.419479 | 4.3:+3783650 | None:intergenic |
| CTTCAGGAATTGTATACAAC+AGG | 0.420066 | 4.3:-3788224 | MS.gene55864:CDS |
| TTTAAACAACTCGCACTTCA+AGG | 0.421705 | 4.3:+3782065 | None:intergenic |
| CACATTTGTCTATGGGAAGT+TGG | 0.422457 | 4.3:+3785979 | None:intergenic |
| TAATACTAAAACACCGATAT+CGG | 0.423935 | 4.3:-3786331 | MS.gene55864:CDS |
| CCATATTCAGGAGGCATCCT+TGG | 0.424317 | 4.3:-3781120 | MS.gene55864:CDS |
| AAATAACCAGCTGTCATTGA+TGG | 0.429023 | 4.3:+3779126 | None:intergenic |
| CGTCAAGTGCTGGTAGCTGC+TGG | 0.431345 | 4.3:-3783681 | MS.gene55864:CDS |
| GGAGTTGCCATGATCTATAC+TGG | 0.432492 | 4.3:-3780312 | MS.gene55864:CDS |
| GCTTACCTCCATCCTGATGC+TGG | 0.433639 | 4.3:+3781464 | None:intergenic |
| TACTTTGAATCCTCTGAAGA+TGG | 0.434264 | 4.3:-3780969 | MS.gene55864:CDS |
| TTGTCAGTTCTGGATGATAG+AGG | 0.446588 | 4.3:-3780709 | MS.gene55864:CDS |
| ACAGACTATTTGCCGTCACC+TGG | 0.447449 | 4.3:-3780493 | MS.gene55864:CDS |
| TTGAAGTGGAGCTTTCTAAT+GGG | 0.448266 | 4.3:-3783919 | MS.gene55864:CDS |
| TCCCAAGGTTGCAAATGTAT+AGG | 0.449723 | 4.3:+3785540 | None:intergenic |
| AAGATGCCCTGGTTGGTGCT+TGG | 0.450458 | 4.3:-3779343 | MS.gene55864:CDS |
| ATCTGCCCTTGCTCTATGGT+TGG | 0.452524 | 4.3:-3779035 | MS.gene55864:CDS |
| ATAATTTCTTCACCAGTTCC+GGG | 0.454168 | 4.3:+3785511 | None:intergenic |
| CCCATACCATGTCTCTTCAC+AGG | 0.454823 | 4.3:+3786450 | None:intergenic |
| AAGCTACATTACAGGGGAAA+AGG | 0.456519 | 4.3:-3786134 | MS.gene55864:CDS |
| CTCTATGCAGATCTATGTCC+AGG | 0.456629 | 4.3:-3780639 | MS.gene55864:CDS |
| AGCTATGAAATGGTAGTTAA+CGG | 0.457614 | 4.3:-3788278 | MS.gene55864:CDS |
| AATCAAGCTCAAATGTCATA+TGG | 0.457725 | 4.3:+3780263 | None:intergenic |
| GTCTTCTTTCTCCCTGCACA+TGG | 0.460298 | 4.3:+3780207 | None:intergenic |
| CAGACCAGTCTGAGCTGGAT+AGG | 0.460370 | 4.3:-3780576 | MS.gene55864:CDS |
| AGGTTGTCTACATCAGATAC+TGG | 0.461489 | 4.3:+3780532 | None:intergenic |
| ATCGTCGGTACAATAGATAT+TGG | 0.462268 | 4.3:-3781040 | MS.gene55864:CDS |
| AAACACCGATATCGGTCAAC+AGG | 0.465550 | 4.3:-3786323 | MS.gene55864:CDS |
| TTGCATGACTTATTTAAATG+AGG | 0.468684 | 4.3:+3783890 | None:intergenic |
| TTTGCCGTCACCTGGGGCCG+TGG | 0.469237 | 4.3:-3780485 | MS.gene55864:CDS |
| ATGCATTGCAGTTGTTCGAT+TGG | 0.470085 | 4.3:+3781206 | None:intergenic |
| CTTCATCTTGACAGCACCTG+GGG | 0.473722 | 4.3:+3785566 | None:intergenic |
| CTAAAGCTGATGAGAGGAAA+GGG | 0.475506 | 4.3:-3788377 | None:intergenic |
| GAAATGGTAGTTAACGGAAA+TGG | 0.475537 | 4.3:-3788272 | MS.gene55864:CDS |
| TTCATCTTCGAGCTATGAAA+TGG | 0.475741 | 4.3:-3788288 | MS.gene55864:CDS |
| AATATTGCTAACCTTAATCC+TGG | 0.477800 | 4.3:+3780621 | None:intergenic |
| ACATGGTATGGGGAAAGGGC+TGG | 0.479635 | 4.3:-3786502 | MS.gene55864:CDS |
| AATCCTCTGAAGATGGTCAC+TGG | 0.480503 | 4.3:-3780962 | MS.gene55864:CDS |
| TAAGGTTAGCAATATTGGAA+TGG | 0.480504 | 4.3:-3780614 | MS.gene55864:CDS |
| TCTTCATCTTGACAGCACCT+GGG | 0.481996 | 4.3:+3785565 | None:intergenic |
| TCAACAGAACCAAAACTGAT+TGG | 0.482815 | 4.3:+3786375 | None:intergenic |
| CTTGCTGCCAATGGAATGCT+TGG | 0.484860 | 4.3:-3785831 | MS.gene55864:CDS |
| GAAATTGATGAGAGCCATGC+AGG | 0.484983 | 4.3:-3781591 | MS.gene55864:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4.3:-3786451 | MS.gene55864:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4.3:-3786514 | MS.gene55864:intron |
| CAATCCACATAGCCATGTGC+AGG | 0.485329 | 4.3:-3780219 | MS.gene55864:CDS |
| ATCATGGCAACTCCTACATC+TGG | 0.485568 | 4.3:+3780321 | None:intergenic |
| GGGGCCGTGGTAATTGAAGC+TGG | 0.485582 | 4.3:-3780472 | MS.gene55864:CDS |
| ATCTGAACAGATAAGCAGAT+TGG | 0.486807 | 4.3:+3785857 | None:intergenic |
| GCTGCCAATGGAATGCTTGG+TGG | 0.493534 | 4.3:-3785828 | MS.gene55864:CDS |
| AGTATCTCAATCCAAGTAAG+AGG | 0.493928 | 4.3:+3783705 | None:intergenic |
| GCAAGTTCACATTTGTCTAT+GGG | 0.494289 | 4.3:+3785972 | None:intergenic |
| GTTCCTCCGTTGTGCTGGAA+AGG | 0.494796 | 4.3:+3781892 | None:intergenic |
| GTAAACTATGGCCTATGCCC+TGG | 0.495245 | 4.3:-3782090 | MS.gene55864:CDS |
| AAGAGACATGGTATGGGAAA+AGG | 0.496025 | 4.3:-3786444 | MS.gene55864:CDS |
| AATAACAATGAGGAATCTAC+TGG | 0.500216 | 4.3:+3781152 | None:intergenic |
| GTTTCTTCAACTACACCGTC+AGG | 0.502669 | 4.3:+3779091 | None:intergenic |
| TTTCCCTATCCAGCTCAGAC+TGG | 0.503127 | 4.3:+3780572 | None:intergenic |
| GCAACCTTGGGACTCCTCCC+CGG | 0.504024 | 4.3:-3785529 | MS.gene55864:CDS |
| AAGAATACTCTGTTGATGCT+TGG | 0.504490 | 4.3:-3783743 | MS.gene55864:CDS |
| AAGTAAACCCTCCTGTGGCC+AGG | 0.505805 | 4.3:+3780987 | None:intergenic |
| CTTGGTGGCTCACTTTGTCC+AGG | 0.506367 | 4.3:-3785813 | MS.gene55864:intron |
| AGATAGAAGCAGTGTGAGAA+GGG | 0.510823 | 4.3:+3783946 | None:intergenic |
| CCAGGATCATCTATATTACA+AGG | 0.511974 | 4.3:+3781005 | None:intergenic |
| ACTCAGAAGTCACAGGGAAT+CGG | 0.512375 | 4.3:-3778968 | MS.gene55864:CDS |
| TCTCCCTGCACATGGCTATG+TGG | 0.514678 | 4.3:+3780215 | None:intergenic |
| CAGCAGCTACCAGCACTTGA+CGG | 0.519244 | 4.3:+3783682 | None:intergenic |
| TTGATTCTCTCGCCAGATGT+AGG | 0.519303 | 4.3:-3780333 | MS.gene55864:CDS |
| AGTAATATCACTTGAAAGTG+TGG | 0.519490 | 4.3:+3781851 | None:intergenic |
| AAGCCTGAACAAACTCATCA+AGG | 0.520032 | 4.3:+3784118 | None:intergenic |
| GCCAAGGTCCTCTCTTTGAA+AGG | 0.520221 | 4.3:+3783638 | None:intergenic |
| AGAGACATGGTATGGGGAAA+GGG | 0.521452 | 4.3:-3786506 | MS.gene55864:CDS |
| ACTTCCTCCAAGCACCAACC+AGG | 0.522313 | 4.3:+3779336 | None:intergenic |
| TCAGATCAACTTGCTGCCAA+TGG | 0.522914 | 4.3:-3785840 | MS.gene55864:CDS |
| AAGAGACATGGTATGGGGAA+AGG | 0.524365 | 4.3:-3786507 | MS.gene55864:CDS |
| CAGATAGAAGCAGTGTGAGA+AGG | 0.525187 | 4.3:+3783945 | None:intergenic |
| GTTTAGATAACTTACATTCG+TGG | 0.525191 | 4.3:+3786284 | None:intergenic |
| TGAGATACTCCGTCAAGTGC+TGG | 0.529972 | 4.3:-3783691 | MS.gene55864:CDS |
| CATCTCTCCAGTATAGATCA+TGG | 0.530113 | 4.3:+3780305 | None:intergenic |
| ACATTCAGACCAGTCTGAGC+TGG | 0.531147 | 4.3:-3780581 | MS.gene55864:CDS |
| AGCAAGGGCAGATGAAGTAT+GGG | 0.532881 | 4.3:+3779045 | None:intergenic |
| TGTTATGCCTGAAGATGCCC+TGG | 0.533990 | 4.3:-3779354 | MS.gene55864:CDS |
| TTGTTTGAAGTACCTTGCCA+AGG | 0.534270 | 4.3:+3783622 | None:intergenic |
| AGACCAGTCTGAGCTGGATA+GGG | 0.535466 | 4.3:-3780575 | MS.gene55864:CDS |
| TTGGTGCCATCAATGACAGC+TGG | 0.537896 | 4.3:-3779132 | MS.gene55864:CDS |
| ATGCCCTGGTTGGTGCTTGG+AGG | 0.538599 | 4.3:-3779340 | MS.gene55864:CDS |
| CAGAACCAAAACTGATTGGA+AGG | 0.541573 | 4.3:+3786379 | None:intergenic |
| GCTTCAATTACCACGGCCCC+AGG | 0.541939 | 4.3:+3780475 | None:intergenic |
| AGGACCAAGAGCCTGTCAAA+AGG | 0.545350 | 4.3:-3786797 | MS.gene55864:CDS |
| CCTTGTAATATAGATGATCC+TGG | 0.547464 | 4.3:-3781005 | MS.gene55864:CDS |
| CAATGAGGAATCTACTGGAC+AGG | 0.547527 | 4.3:+3781157 | None:intergenic |
| GGTAATTGAAGCTGGGAAGA+AGG | 0.549955 | 4.3:-3780464 | MS.gene55864:CDS |
| GTTTGGACTCTGTCCAGATA+AGG | 0.551930 | 4.3:+3778989 | None:intergenic |
| CTGTAATCTCAGTCAGATTG+AGG | 0.552109 | 4.3:+3780512 | None:intergenic |
| ACAACTGCAATGCATTAAAG+AGG | 0.555923 | 4.3:-3781198 | MS.gene55864:CDS |
| TTGTCAGAACGAGGCAACAA+TGG | 0.560653 | 4.3:-3782039 | MS.gene55864:CDS |
| CAGACTATTTGCCGTCACCT+GGG | 0.563653 | 4.3:-3780492 | MS.gene55864:CDS |
| ATATAGATGATCCTGGCCAC+AGG | 0.564017 | 4.3:-3780998 | MS.gene55864:CDS |
| AACAAACTCATCAAGGGTGA+AGG | 0.565704 | 4.3:+3784125 | None:intergenic |
| AATAAGAAAGCTACATTACA+GGG | 0.566537 | 4.3:-3786141 | MS.gene55864:CDS |
| ATCCTCTGAAGATGGTCACT+GGG | 0.566566 | 4.3:-3780961 | MS.gene55864:CDS |
| GCTGGATTCGGTTCCAAGCA+AGG | 0.566700 | 4.3:-3783663 | MS.gene55864:CDS |
| CATTGATGCAAAAGATGCAA+TGG | 0.566879 | 4.3:+3779069 | None:intergenic |
| ATTACCACGGCCCCAGGTGA+CGG | 0.567845 | 4.3:+3780481 | None:intergenic |
| AGTCCAAACTCAGAAGTCAC+AGG | 0.571605 | 4.3:-3778975 | MS.gene55864:CDS |
| GCTTCTATCTGACATTGAAG+TGG | 0.574080 | 4.3:-3783933 | MS.gene55864:CDS |
| TGAGCCACCAAGCATTCCAT+TGG | 0.574961 | 4.3:+3785824 | None:intergenic |
| TCAAATTCATTTCCCAGAGT+AGG | 0.578521 | 4.3:+3788164 | None:intergenic |
| AAGGTCTAATGACAATTTGG+AGG | 0.579831 | 4.3:-3786425 | MS.gene55864:CDS |
| GATAGCTCAATATCTGAGGC+GGG | 0.580724 | 4.3:-3785945 | MS.gene55864:CDS |
| AGAGCCTGTCAAAAGGAGAA+AGG | 0.581783 | 4.3:-3786790 | MS.gene55864:intron |
| TTCAATGATTGAATCTGTGA+TGG | 0.585951 | 4.3:+3780154 | None:intergenic |
| TGAAGCTGGGAAGAAGGAAG+AGG | 0.586208 | 4.3:-3780458 | MS.gene55864:CDS |
| TTTAAAATCTTGTCAGAACG+AGG | 0.587182 | 4.3:-3782048 | MS.gene55864:CDS |
| TGAGATGGCAAAGTCAATGC+AGG | 0.587326 | 4.3:-3782004 | MS.gene55864:intron |
| AATGATGATGCTCCTACTCT+GGG | 0.588700 | 4.3:-3788176 | MS.gene55864:CDS |
| GCGTATGAGCACTGTTGCAA+AGG | 0.588763 | 4.3:-3781793 | MS.gene55864:CDS |
| ATCTGGATCCAGCATCAGGA+TGG | 0.589373 | 4.3:-3781472 | MS.gene55864:CDS |
| ACTAAAGCTGATGAGAGGAA+AGG | 0.589673 | 4.3:-3788378 | None:intergenic |
| CAAAAGCTCCACTAAAGTTG+AGG | 0.593595 | 4.3:+3779277 | None:intergenic |
| TAGATGATCCTGGCCACAGG+AGG | 0.595474 | 4.3:-3780995 | MS.gene55864:CDS |
| TGTCAGTTCTGGATGATAGA+GGG | 0.595858 | 4.3:-3780708 | MS.gene55864:CDS |
| AGCCTGAACAAACTCATCAA+GGG | 0.599006 | 4.3:+3784119 | None:intergenic |
| GAGCTGAGAGAGATACAAGA+AGG | 0.599309 | 4.3:-3785882 | MS.gene55864:CDS |
| GGGCCGTGGTAATTGAAGCT+GGG | 0.599356 | 4.3:-3780471 | MS.gene55864:CDS |
| AGACTATTTGCCGTCACCTG+GGG | 0.600734 | 4.3:-3780491 | MS.gene55864:CDS |
| GTGCCACCGTGTTATTCTCG+TGG | 0.601615 | 4.3:-3788347 | MS.gene55864:CDS |
| ACTTCAAGGTTCCAGGGCAT+AGG | 0.601780 | 4.3:+3782079 | None:intergenic |
| AGATAGCTCAATATCTGAGG+CGG | 0.604337 | 4.3:-3785946 | MS.gene55864:CDS |
| TTTAGATAGCTCAATATCTG+AGG | 0.608942 | 4.3:-3785949 | MS.gene55864:CDS |
| CTCAAAGTTCCATATTCAGG+AGG | 0.611836 | 4.3:-3781129 | MS.gene55864:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.611916 | 4.3:-3786513 | MS.gene55864:intron |
| AGGTTAGCAATATTGGAATG+GGG | 0.612766 | 4.3:-3780612 | MS.gene55864:CDS |
| AAGCTCGTCATCAACACTAC+CGG | 0.614151 | 4.3:+3781737 | None:intergenic |
| ACTTCACCAACCATAGAGCA+AGG | 0.614951 | 4.3:+3779029 | None:intergenic |
| TGGATGCAAAGTTTCTGAGA+TGG | 0.615952 | 4.3:-3782019 | MS.gene55864:CDS |
| AGGTCTAATGACAATTTGGA+GGG | 0.616828 | 4.3:-3786424 | MS.gene55864:CDS |
| ATGCCTGAAGATGCCCTGGT+TGG | 0.618515 | 4.3:-3779350 | MS.gene55864:CDS |
| TTTCAGTGCAAATTTCCTGA+CGG | 0.619499 | 4.3:-3779106 | MS.gene55864:CDS |
| GCCTTTCAAAGAGAGGACCT+TGG | 0.619513 | 4.3:-3783639 | MS.gene55864:CDS |
| AGCTGCAATTTATGCAATCG+AGG | 0.620896 | 4.3:-3780131 | MS.gene55864:intron |
| ACAAACTCATCAAGGGTGAA+GGG | 0.620929 | 4.3:+3784126 | None:intergenic |
| ATGTTGTAAAATATGGCAGA+AGG | 0.622775 | 4.3:-3780363 | MS.gene55864:CDS |
| TAATTTCTTCACCAGTTCCG+GGG | 0.623751 | 4.3:+3785512 | None:intergenic |
| TCAAAGAGAGGACCTTGGCA+AGG | 0.624333 | 4.3:-3783634 | MS.gene55864:intron |
| AAAAGTGCTTCAGAGAGAGA+AGG | 0.626049 | 4.3:-3788321 | MS.gene55864:CDS |
| AGCATCATCATTCAGCAACA+CGG | 0.629233 | 4.3:+3788187 | None:intergenic |
| GCAAGGTGCCTTTCAAAGAG+AGG | 0.632550 | 4.3:-3783646 | MS.gene55864:CDS |
| CTTCCCAGCTTCAATTACCA+CGG | 0.632661 | 4.3:+3780468 | None:intergenic |
| TTCATCTTGACAGCACCTGG+GGG | 0.632862 | 4.3:+3785567 | None:intergenic |
| ACAACCACACTTCTCCTGCA+TGG | 0.633047 | 4.3:+3781577 | None:intergenic |
| CTCCCAGTGACCATCTTCAG+AGG | 0.634449 | 4.3:+3780959 | None:intergenic |
| GACTCTGATACATGTAGCAG+CGG | 0.637550 | 4.3:-3781711 | MS.gene55864:CDS |
| GGAGGTGATTGATACAGAAG+AGG | 0.643789 | 4.3:-3780940 | MS.gene55864:intron |
| TGGATCCAGCATCAGGATGG+AGG | 0.643948 | 4.3:-3781469 | MS.gene55864:intron |
| CAGTCAGATACAGAGGACTC+CGG | 0.646933 | 4.3:-3781756 | MS.gene55864:CDS |
| CTCTGAAGATGGTCACTGGG+AGG | 0.648609 | 4.3:-3780958 | MS.gene55864:CDS |
| CTGTGAAGAGACATGGTATG+GGG | 0.650147 | 4.3:-3786512 | MS.gene55864:intron |
| TTTCTTCACCAGTTCCGGGG+AGG | 0.651652 | 4.3:+3785515 | None:intergenic |
| ACTCGCACTTCAAGGTTCCA+GGG | 0.651902 | 4.3:+3782073 | None:intergenic |
| ACTCTAATATAAGAAAATTG+CGG | 0.652919 | 4.3:-3781662 | MS.gene55864:CDS |
| AGATGATCCTGGCCACAGGA+GGG | 0.655779 | 4.3:-3780994 | MS.gene55864:CDS |
| GTCCAAACTCAGAAGTCACA+GGG | 0.655949 | 4.3:-3778974 | MS.gene55864:CDS |
| AGTTCCGGGGAGGAGTCCCA+AGG | 0.656721 | 4.3:+3785525 | None:intergenic |
| AAACCTTTCCAGCACAACGG+AGG | 0.657818 | 4.3:-3781895 | MS.gene55864:CDS |
| ATTAAACCTTTCCAGCACAA+CGG | 0.658154 | 4.3:-3781898 | MS.gene55864:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.659004 | 4.3:-3786450 | MS.gene55864:CDS |
| ACGCAGTCGATATGCAGAGG+AGG | 0.660034 | 4.3:+3781812 | None:intergenic |
| CCACCGTGTTATTCTCGTGG+CGG | 0.661862 | 4.3:-3788344 | MS.gene55864:CDS |
| CTTCCTCCAAGCACCAACCA+GGG | 0.667120 | 4.3:+3779337 | None:intergenic |
| GAACTTTGAGAATAACAATG+AGG | 0.667240 | 4.3:+3781142 | None:intergenic |
| ATAACACTAAAGCTGATGAG+AGG | 0.669095 | 4.3:-3788383 | None:intergenic |
| CAGGATCATCTATATTACAA+GGG | 0.675095 | 4.3:+3781006 | None:intergenic |
| TGATTCTCAGTCAGATACAG+AGG | 0.675639 | 4.3:-3781763 | MS.gene55864:CDS |
| AGCTCTAGTATCCAATTACG+TGG | 0.675689 | 4.3:-3781260 | MS.gene55864:CDS |
| AATCCACATAGCCATGTGCA+GGG | 0.676608 | 4.3:-3780218 | MS.gene55864:CDS |
| CTTCACCAACCATAGAGCAA+GGG | 0.676806 | 4.3:+3779030 | None:intergenic |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4.3:-3786456 | MS.gene55864:CDS |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4.3:-3786519 | MS.gene55864:intron |
| TCATCTTGACAGCACCTGGG+GGG | 0.684014 | 4.3:+3785568 | None:intergenic |
| GCAAGGGCAGATGAAGTATG+GGG | 0.684017 | 4.3:+3779046 | None:intergenic |
| CATACGCAGTCGATATGCAG+AGG | 0.685025 | 4.3:+3781809 | None:intergenic |
| AAGAATCATATTCTTGAACA+CGG | 0.690524 | 4.3:+3780416 | None:intergenic |
| ATTCAAAGTAAACCCTCCTG+TGG | 0.694820 | 4.3:+3780982 | None:intergenic |
| GGATGATAGAGGGAAGCGCG+AGG | 0.701469 | 4.3:-3780698 | MS.gene55864:CDS |
| AGAGCCATGCAGGAGAAGTG+TGG | 0.713605 | 4.3:-3781581 | MS.gene55864:CDS |
| ATAAGAAAGCTACATTACAG+GGG | 0.716412 | 4.3:-3786140 | MS.gene55864:CDS |
| TTTCCGCCACGAGAATAACA+CGG | 0.723933 | 4.3:+3788341 | None:intergenic |
| GTTACTTGGACAAATTCACG+TGG | 0.729846 | 4.3:-3783969 | MS.gene55864:CDS |
| CCGCCACGAGAATAACACGG+TGG | 0.798596 | 4.3:+3788344 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3778958 | 3788390 | 3778958 | ID=MS.gene55864 |
| chr4.3 | mRNA | 3778958 | 3788390 | 3778958 | ID=MS.gene55864.t1;Parent=MS.gene55864 |
| chr4.3 | exon | 3788150 | 3788390 | 3788150 | ID=MS.gene55864.t1.exon1;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3788150 | 3788390 | 3788150 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3786791 | 3786849 | 3786791 | ID=MS.gene55864.t1.exon2;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3786791 | 3786849 | 3786791 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3786299 | 3786526 | 3786299 | ID=MS.gene55864.t1.exon3;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3786299 | 3786526 | 3786299 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3786110 | 3786187 | 3786110 | ID=MS.gene55864.t1.exon4;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3786110 | 3786187 | 3786110 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3785814 | 3786030 | 3785814 | ID=MS.gene55864.t1.exon5;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3785814 | 3786030 | 3785814 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3785506 | 3785606 | 3785506 | ID=MS.gene55864.t1.exon6;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3785506 | 3785606 | 3785506 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3784107 | 3784193 | 3784107 | ID=MS.gene55864.t1.exon7;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3784107 | 3784193 | 3784107 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3783868 | 3783999 | 3783868 | ID=MS.gene55864.t1.exon8;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3783868 | 3783999 | 3783868 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3783635 | 3783775 | 3783635 | ID=MS.gene55864.t1.exon9;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3783635 | 3783775 | 3783635 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3782005 | 3782127 | 3782005 | ID=MS.gene55864.t1.exon10;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3782005 | 3782127 | 3782005 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3781470 | 3781928 | 3781470 | ID=MS.gene55864.t1.exon11;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3781470 | 3781928 | 3781470 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3780941 | 3781309 | 3780941 | ID=MS.gene55864.t1.exon12;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3780941 | 3781309 | 3780941 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3780132 | 3780746 | 3780132 | ID=MS.gene55864.t1.exon13;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3780132 | 3780746 | 3780132 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3779274 | 3779378 | 3779274 | ID=MS.gene55864.t1.exon14;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3779274 | 3779378 | 3779274 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| chr4.3 | exon | 3778958 | 3779170 | 3778958 | ID=MS.gene55864.t1.exon15;Parent=MS.gene55864.t1 |
| chr4.3 | CDS | 3778958 | 3779170 | 3778958 | ID=cds.MS.gene55864.t1;Parent=MS.gene55864.t1 |
| Gene Sequence |
| Protein sequence |
