Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55889.t1 | RHN43577.1 | 98.7 | 1020 | 13 | 0 | 1 | 1020 | 1 | 1020 | 0.00E+00 | 2007.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55889.t1 | Q9FJT9 | 71.6 | 1009 | 229 | 6 | 1 | 1005 | 1 | 955 | 0.0e+00 | 1447.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55889.t1 | A0A396GY53 | 98.7 | 1020 | 13 | 0 | 1 | 1020 | 1 | 1020 | 0.0e+00 | 2007.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059154 | MS.gene55889 | 0.826618 | 2.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55889.t1 | MTR_8g101950 | 94.412 | 1020 | 15 | 2 | 1 | 1020 | 1 | 978 | 0.0 | 1975 |
| MS.gene55889.t1 | MTR_5g007380 | 32.558 | 215 | 132 | 3 | 42 | 253 | 195 | 399 | 6.58e-24 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55889.t1 | AT5G56730 | 74.727 | 1009 | 249 | 4 | 1 | 1005 | 1 | 1007 | 0.0 | 1602 |
| MS.gene55889.t1 | AT5G42390 | 31.797 | 217 | 134 | 3 | 42 | 254 | 198 | 404 | 3.50e-23 | 107 |
| MS.gene55889.t1 | AT5G42390 | 31.797 | 217 | 134 | 3 | 42 | 254 | 198 | 404 | 4.70e-23 | 107 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGACTTCAAAACCAAATA+TGG | 0.182334 | 4.3:-3467982 | MS.gene55889:CDS |
| CAAGAGAAATACTCGCTTTC+TGG | 0.202305 | 4.3:+3464150 | None:intergenic |
| CTTTGAACTCACCCCATATT+TGG | 0.221929 | 4.3:+3467969 | None:intergenic |
| AGAGATTGAATCTGCCTATT+TGG | 0.223259 | 4.3:-3468502 | MS.gene55889:CDS |
| CACTAGGTACTGCAATATTA+AGG | 0.236301 | 4.3:+3462056 | None:intergenic |
| ACTGATTTCAGGAATTTAAA+AGG | 0.239098 | 4.3:+3459376 | None:intergenic |
| AATTGCTGGCCTGGCAGTTT+TGG | 0.239834 | 4.3:-3459215 | MS.gene55889:CDS |
| AGAAGCTGAACATGAGAAAT+AGG | 0.241964 | 4.3:+3468797 | None:intergenic |
| GTTATAATATTGGTCTTTAC+TGG | 0.244590 | 4.3:+3468756 | None:intergenic |
| GTTGCTAGGGTGCGGCTTCA+TGG | 0.261905 | 4.3:-3468570 | MS.gene55889:CDS |
| CCGACCATTGCTGGGGAAAT+TGG | 0.270674 | 4.3:-3464117 | MS.gene55889:CDS |
| TGACAGCCATATTGCATAAA+TGG | 0.280422 | 4.3:+3469323 | None:intergenic |
| GAAAGTATCGGAGCTGAATT+TGG | 0.281086 | 4.3:-3470187 | MS.gene55889:CDS |
| TGGATTGGAATACTGATTTC+AGG | 0.302110 | 4.3:+3459365 | None:intergenic |
| GTAAATGTCTGTTATTAATA+TGG | 0.303921 | 4.3:+3459161 | None:intergenic |
| TCACGGTTAAAATGCATAAT+AGG | 0.305372 | 4.3:+3461938 | None:intergenic |
| TCACAATTTCTTCAGGAATA+TGG | 0.308219 | 4.3:+3468000 | None:intergenic |
| TCTTTCAGGAAAATTATTAC+TGG | 0.319442 | 4.3:-3460244 | MS.gene55889:intron |
| TGGGTTCTTAAGCAAGCTTC+TGG | 0.324282 | 4.3:-3460945 | MS.gene55889:CDS |
| TCCCAACAACAGGTTCATTA+TGG | 0.325895 | 4.3:+3468339 | None:intergenic |
| TTTGAAGTCACAATTTCTTC+AGG | 0.328204 | 4.3:+3467993 | None:intergenic |
| ATCTTCACCGGTTATTCATA+TGG | 0.328978 | 4.3:-3464189 | MS.gene55889:CDS |
| CTCAGATATATCAGCATTAG+AGG | 0.345258 | 4.3:-3468177 | MS.gene55889:intron |
| GAGTTGATAAAGGTTCATTT+TGG | 0.354052 | 4.3:-3469170 | MS.gene55889:CDS |
| ATTGTTGTCTCAGGCGATTT+CGG | 0.356635 | 4.3:-3470092 | MS.gene55889:CDS |
| TCAATGGGACCGACCATTGC+TGG | 0.361839 | 4.3:-3464126 | MS.gene55889:CDS |
| ACATGATGAAGTTATAATAT+TGG | 0.369371 | 4.3:+3468746 | None:intergenic |
| CTAAATATTCTGAGAAATTA+CGG | 0.372204 | 4.3:-3468151 | MS.gene55889:CDS |
| TCCACCTATTCCAACATTCC+AGG | 0.372222 | 4.3:-3469123 | MS.gene55889:CDS |
| GCTGGGGAAATTGGTGTGTT+TGG | 0.372812 | 4.3:-3464108 | MS.gene55889:CDS |
| TAGAAGAGATTCACTTTGTT+GGG | 0.373154 | 4.3:-3460964 | MS.gene55889:CDS |
| CCTCTGTTAACATTGATTCC+AGG | 0.373957 | 4.3:+3468700 | None:intergenic |
| TCACCTTCAGACCTGGAAAC+TGG | 0.376898 | 4.3:-3463988 | MS.gene55889:CDS |
| ATCAAACACGGCAAATGTTC+GGG | 0.378987 | 4.3:+3468094 | None:intergenic |
| ATTATCCTGTTTCAGATTCA+AGG | 0.381663 | 4.3:-3459523 | MS.gene55889:intron |
| TTTGTTGAATCTGAAGCTGC+TGG | 0.382487 | 4.3:-3469068 | MS.gene55889:CDS |
| AAGCAGTCTGTGCTCAAGAT+AGG | 0.383157 | 4.3:-3462354 | MS.gene55889:CDS |
| GAGTGTAGTTGAGTTGATAA+AGG | 0.384364 | 4.3:-3469180 | MS.gene55889:CDS |
| AGACCTGGAAACTGGCTTGC+AGG | 0.384413 | 4.3:-3463980 | MS.gene55889:intron |
| ATGGTACCATTTATGCAATA+TGG | 0.389252 | 4.3:-3469329 | MS.gene55889:CDS |
| GAGTATTTCTCTTGCTCAAT+GGG | 0.390747 | 4.3:-3464141 | MS.gene55889:CDS |
| AACAATTCCGGCTTGTCAAC+GGG | 0.391308 | 4.3:+3470109 | None:intergenic |
| TTTACAGGTTGATATTGCTT+TGG | 0.391872 | 4.3:-3460606 | MS.gene55889:intron |
| ATACCTGCAAGCCAGTTTCC+AGG | 0.394718 | 4.3:+3463977 | None:intergenic |
| AGCGGCTCTCATGCGTGGTT+TGG | 0.396887 | 4.3:+3470490 | None:intergenic |
| TACAGACTTCCTTGATGATC+AGG | 0.397550 | 4.3:-3467173 | MS.gene55889:intron |
| TCTTCACCGGTTATTCATAT+GGG | 0.398554 | 4.3:-3464188 | MS.gene55889:CDS |
| AAGGCATGTTGTGAAGGAAT+TGG | 0.398678 | 4.3:-3467260 | MS.gene55889:CDS |
| TTATAGACCATCTGTCCTAA+TGG | 0.403308 | 4.3:-3464085 | MS.gene55889:CDS |
| CGTGTAAAGGAGCTTAATTA+TGG | 0.404084 | 4.3:-3462307 | MS.gene55889:CDS |
| GTCCTAATGGATATGCTTGC+TGG | 0.407215 | 4.3:-3464072 | MS.gene55889:CDS |
| CTTGCACTCGCCGTCAGAGT+CGG | 0.407597 | 4.3:-3470467 | MS.gene55889:CDS |
| TACCAATCAAGAGTCTATTC+TGG | 0.407973 | 4.3:-3460200 | MS.gene55889:CDS |
| CTCCATAATGAACCTGTTGT+TGG | 0.408200 | 4.3:-3468341 | MS.gene55889:CDS |
| CACCGTTTGTTCGAGTGGAT+TGG | 0.408963 | 4.3:+3459350 | None:intergenic |
| ACTGAACTTATTCTGTCAAA+TGG | 0.412439 | 4.3:-3467217 | MS.gene55889:CDS |
| CATCAAACACGGCAAATGTT+CGG | 0.415336 | 4.3:+3468093 | None:intergenic |
| GTAGGTGTTTCGGTATTCCT+TGG | 0.418428 | 4.3:-3460790 | MS.gene55889:CDS |
| GTGACTTCAAAACCAAATAT+GGG | 0.421073 | 4.3:-3467981 | MS.gene55889:CDS |
| TCCATAATGAACCTGTTGTT+GGG | 0.422638 | 4.3:-3468340 | MS.gene55889:CDS |
| CGGTTTGTAAAAGCAGTATA+GGG | 0.422820 | 4.3:+3462328 | None:intergenic |
| AGCGCATGAGAATGGATTGC+AGG | 0.426028 | 4.3:-3460510 | MS.gene55889:intron |
| CGAGTATTTCTCTTGCTCAA+TGG | 0.427411 | 4.3:-3464142 | MS.gene55889:CDS |
| AACTTGATCTCGCTCCAAAT+AGG | 0.429517 | 4.3:+3468488 | None:intergenic |
| GTAGAAGAGATTCACTTTGT+TGG | 0.430584 | 4.3:-3460965 | MS.gene55889:CDS |
| ATAATAGGTTCAGGAGGCTT+TGG | 0.430679 | 4.3:+3461953 | None:intergenic |
| GCTGAAGTCGGCACCAAGAT+TGG | 0.433512 | 4.3:-3464042 | MS.gene55889:CDS |
| ACGGTTTGTAAAAGCAGTAT+AGG | 0.434820 | 4.3:+3462327 | None:intergenic |
| GGAGGCTGCAGGATGCTCAT+TGG | 0.435034 | 4.3:-3469582 | MS.gene55889:CDS |
| ATCACTTTCTCGAGTCCAAT+TGG | 0.436300 | 4.3:+3469394 | None:intergenic |
| TGCTCATTGGACTCTGTTGA+TGG | 0.437075 | 4.3:-3469569 | MS.gene55889:CDS |
| ATCGCCTGAGACAACAATTC+CGG | 0.442458 | 4.3:+3470097 | None:intergenic |
| GGTAATAAACCCTCAAGAAC+CGG | 0.442867 | 4.3:-3460766 | MS.gene55889:CDS |
| GATATACTCTGTAGGTGTTT+CGG | 0.443859 | 4.3:-3460800 | MS.gene55889:CDS |
| TTAAAATGCATAATAGGTTC+AGG | 0.444139 | 4.3:+3461944 | None:intergenic |
| AAAATTATTACTGGCTGGAC+CGG | 0.447092 | 4.3:-3460235 | MS.gene55889:CDS |
| TCTCATATATGCACCAATCT+TGG | 0.447471 | 4.3:+3464029 | None:intergenic |
| AAATGCCACGGGGAGGCTGC+AGG | 0.452143 | 4.3:-3469593 | MS.gene55889:CDS |
| CATGGTGGAAGCACAATGTT+TGG | 0.452540 | 4.3:-3461149 | MS.gene55889:CDS |
| GTTGGAATAGGTGGAGGATC+AGG | 0.461797 | 4.3:+3469131 | None:intergenic |
| TCAGGAAAATTATTACTGGC+TGG | 0.463767 | 4.3:-3460240 | MS.gene55889:intron |
| ACTTCATCATGTAGAGGAAA+AGG | 0.464090 | 4.3:-3468735 | MS.gene55889:CDS |
| GAGCTGTCATGGAAGAGTAC+AGG | 0.466656 | 4.3:-3469624 | MS.gene55889:CDS |
| GTCCCATTCTTCAGCTCCAC+AGG | 0.468016 | 4.3:+3461112 | None:intergenic |
| CTGAACTTATTCTGTCAAAT+GGG | 0.468430 | 4.3:-3467216 | MS.gene55889:CDS |
| TTGCACTCGCCGTCAGAGTC+GGG | 0.469577 | 4.3:-3470466 | MS.gene55889:intron |
| GCCAGCTTGGAAGATATCTC+TGG | 0.472566 | 4.3:+3460703 | None:intergenic |
| ACTAGGTACTGCAATATTAA+GGG | 0.473108 | 4.3:+3462057 | None:intergenic |
| AGTGCCAACTGTGCAGTTGA+TGG | 0.474818 | 4.3:+3459466 | None:intergenic |
| TCTGCCACCGTTTGTTCGAG+TGG | 0.475330 | 4.3:+3459345 | None:intergenic |
| CAACCCGTCGGCGTCGACTT+CGG | 0.477435 | 4.3:-3470554 | MS.gene55889:CDS |
| AAAAGGAACTCTTGAAGCCC+TGG | 0.477760 | 4.3:-3468718 | MS.gene55889:CDS |
| GAAAGAAAGAGGAGCTGTCA+TGG | 0.477993 | 4.3:-3469635 | MS.gene55889:CDS |
| AAGCCTTGTTTCCTTGAGAT+CGG | 0.478729 | 4.3:+3470626 | None:intergenic |
| CTCTGTTAACATTGATTCCA+GGG | 0.479060 | 4.3:+3468701 | None:intergenic |
| GAATTGGAATACTCAAACAT+TGG | 0.479944 | 4.3:-3467244 | MS.gene55889:CDS |
| TGATACTGTTTATGAGCTGT+TGG | 0.485159 | 4.3:-3470134 | MS.gene55889:CDS |
| ATTAATAACAGACATTTACT+TGG | 0.487157 | 4.3:-3459157 | MS.gene55889:CDS |
| GAGCAAAGAGCGCATGAGAA+TGG | 0.488726 | 4.3:-3460518 | MS.gene55889:CDS |
| CCTACAAAAGGTTGATCCTC+TGG | 0.489250 | 4.3:-3462169 | MS.gene55889:CDS |
| GTTAAGTTTCTTGAAAGTAT+CGG | 0.489598 | 4.3:-3470199 | MS.gene55889:CDS |
| ACTGTGCAGTTGATGGGGTA+AGG | 0.490054 | 4.3:+3459473 | None:intergenic |
| CAAGCCGGAATTGTTGTCTC+AGG | 0.490415 | 4.3:-3470101 | MS.gene55889:CDS |
| TCACAACAGGTTATCTTCAC+CGG | 0.490426 | 4.3:-3464201 | MS.gene55889:intron |
| TTTCCTGTGGAGCTGAAGAA+TGG | 0.491550 | 4.3:-3461115 | MS.gene55889:CDS |
| TTGTTGAATCTGAAGCTGCT+GGG | 0.492445 | 4.3:-3469067 | MS.gene55889:CDS |
| TTCCTGTGGAGCTGAAGAAT+GGG | 0.492629 | 4.3:-3461114 | MS.gene55889:CDS |
| CACGTGGTAGAAGAGTCTTT+TGG | 0.493588 | 4.3:+3468297 | None:intergenic |
| CTTCACCGGTTATTCATATG+GGG | 0.493880 | 4.3:-3464187 | MS.gene55889:CDS |
| GAAGCTGAACATGAGAAATA+GGG | 0.494090 | 4.3:+3468798 | None:intergenic |
| CGGGTTGGTCAGAGAGGAGT+TGG | 0.494655 | 4.3:+3470570 | None:intergenic |
| AGTCAATCTTCTTGAGGAAG+AGG | 0.498368 | 4.3:-3468048 | MS.gene55889:CDS |
| ATCGGAGTTGCTGCTTCTGA+TGG | 0.499100 | 4.3:+3470644 | None:intergenic |
| CAGGTTCTCCGTTTCAAGCA+TGG | 0.503187 | 4.3:-3460908 | MS.gene55889:CDS |
| ACCTGGAATGTTGGAATAGG+TGG | 0.504632 | 4.3:+3469122 | None:intergenic |
| TCATACACAATCCCAACAAC+AGG | 0.504658 | 4.3:+3468329 | None:intergenic |
| CTAAATAAGGCATGTTGTGA+AGG | 0.505653 | 4.3:-3467266 | MS.gene55889:intron |
| TGCCAGCAAGCATATCCATT+AGG | 0.506245 | 4.3:+3464070 | None:intergenic |
| ATTAAGGGAAGTGCAATAGT+AGG | 0.507692 | 4.3:+3462072 | None:intergenic |
| CGAACAATACCGGTTCTTGA+GGG | 0.508244 | 4.3:+3460757 | None:intergenic |
| ATTCTTTGATTGTAGAGAAG+TGG | 0.508477 | 4.3:-3461182 | MS.gene55889:intron |
| ACAGGATGTTTCAACCGTAC+TGG | 0.509291 | 4.3:-3460546 | MS.gene55889:CDS |
| TGTTTCAGATTCAAGGTGAC+GGG | 0.509310 | 4.3:-3459516 | MS.gene55889:intron |
| GTTGGTTCCCGTTGACAAGC+CGG | 0.509570 | 4.3:-3470116 | MS.gene55889:CDS |
| CAATGGGACCGACCATTGCT+GGG | 0.510124 | 4.3:-3464125 | MS.gene55889:CDS |
| TTCCAATCCACTCGAACAAA+CGG | 0.510204 | 4.3:-3459352 | MS.gene55889:CDS |
| TATGCTGAAAGGTTACCAAT+TGG | 0.511296 | 4.3:-3469409 | MS.gene55889:CDS |
| ATTGGTAGCTATGTAAAATC+CGG | 0.513907 | 4.3:+3460216 | None:intergenic |
| ATGGAGGAGACTTGCCAGCT+TGG | 0.514065 | 4.3:+3460690 | None:intergenic |
| AGATGAAGGACCTACAGAAC+AGG | 0.519896 | 4.3:-3460564 | MS.gene55889:CDS |
| CACCAGAATAGACTCTTGAT+TGG | 0.521577 | 4.3:+3460198 | None:intergenic |
| AGCATATCCATTAGGACAGA+TGG | 0.525339 | 4.3:+3464078 | None:intergenic |
| GGCAAATGTTCGGGGCTCCA+TGG | 0.525394 | 4.3:+3468103 | None:intergenic |
| TACCCCATCAACTGCACAGT+TGG | 0.526709 | 4.3:-3459470 | MS.gene55889:CDS |
| GTGCCAACTGTGCAGTTGAT+GGG | 0.527009 | 4.3:+3459467 | None:intergenic |
| AAACATTGTGCTTCCACCAT+GGG | 0.528145 | 4.3:+3461151 | None:intergenic |
| GGTGTTTCGGTATTCCTTGG+CGG | 0.529926 | 4.3:-3460787 | MS.gene55889:CDS |
| AACTAAGAGCCAAAACTGCC+AGG | 0.530084 | 4.3:+3459206 | None:intergenic |
| TCTTTGCTCAATTTCCAGTA+CGG | 0.530327 | 4.3:+3460532 | None:intergenic |
| AGGTTCTCCGTTTCAAGCAT+GGG | 0.531224 | 4.3:-3460907 | MS.gene55889:CDS |
| CATAATTAAGCTCCTTTACA+CGG | 0.532305 | 4.3:+3462308 | None:intergenic |
| GAATTTAAAAGGAGAAGACT+TGG | 0.533783 | 4.3:+3459387 | None:intergenic |
| CATTGGACTCTGTTGATGGA+AGG | 0.534418 | 4.3:-3469565 | MS.gene55889:CDS |
| CAACAATTCCGGCTTGTCAA+CGG | 0.535577 | 4.3:+3470108 | None:intergenic |
| TCACCTGCCCATGCTTGAAA+CGG | 0.535705 | 4.3:+3460900 | None:intergenic |
| TCTCCGTTTCAAGCATGGGC+AGG | 0.535920 | 4.3:-3460903 | MS.gene55889:intron |
| GGTACAGATATGCTTTCCTG+TGG | 0.536610 | 4.3:-3461128 | MS.gene55889:CDS |
| GGTCATCATGTGATGGAACC+TGG | 0.536900 | 4.3:+3469105 | None:intergenic |
| GGAACCTGGAATGTTGGAAT+AGG | 0.537128 | 4.3:+3469119 | None:intergenic |
| TTTAGCTGGAATTGCTGGCC+TGG | 0.538396 | 4.3:-3459224 | MS.gene55889:CDS |
| TCTGTTGATGGAAGGTTCAA+AGG | 0.539469 | 4.3:-3469557 | MS.gene55889:intron |
| TCAAGAACCGGTATTGTTCG+TGG | 0.539580 | 4.3:-3460754 | MS.gene55889:CDS |
| AGAGTCTATTCTGGTGATGT+TGG | 0.539916 | 4.3:-3460191 | MS.gene55889:CDS |
| TCGAGTATCGAAAGATGACT+TGG | 0.542562 | 4.3:-3469659 | MS.gene55889:CDS |
| CGAAGTCGACGCCGACGGGT+TGG | 0.542868 | 4.3:+3470555 | None:intergenic |
| AGCAGTCTGTGCTCAAGATA+GGG | 0.543777 | 4.3:-3462353 | MS.gene55889:CDS |
| GTGCTTCCACCATGGGACTT+CGG | 0.546255 | 4.3:+3461158 | None:intergenic |
| TAAGAAAGTCAATCTTCTTG+AGG | 0.547713 | 4.3:-3468054 | MS.gene55889:CDS |
| ACGAACAATACCGGTTCTTG+AGG | 0.548426 | 4.3:+3460756 | None:intergenic |
| TATGTCTCCACGAACAATAC+CGG | 0.550388 | 4.3:+3460747 | None:intergenic |
| TGACTGTTCACCTTCAGACC+TGG | 0.550400 | 4.3:-3463995 | MS.gene55889:CDS |
| AGCTGTCATGGAAGAGTACA+GGG | 0.550451 | 4.3:-3469623 | MS.gene55889:CDS |
| ATCTCTGGTTTAATGCATAG+AGG | 0.550760 | 4.3:+3468850 | None:intergenic |
| AGAGGGTAAAATTTCTTCGT+GGG | 0.551146 | 4.3:-3468030 | MS.gene55889:CDS |
| AAGCAGCAACTCCGATCTCA+AGG | 0.551701 | 4.3:-3470637 | MS.gene55889:CDS |
| AAATACTAACCCGACTCTGA+CGG | 0.552340 | 4.3:+3470457 | None:intergenic |
| TAATATTGGTCTTTACTGGA+CGG | 0.553231 | 4.3:+3468760 | None:intergenic |
| GTGCCGAAGTCGACGCCGAC+GGG | 0.554379 | 4.3:+3470551 | None:intergenic |
| ATAGGTGGAGGATCAGGTGC+TGG | 0.554537 | 4.3:+3469137 | None:intergenic |
| CCTCACGGTCTCAGGAGAAA+CGG | 0.555379 | 4.3:+3469366 | None:intergenic |
| TGGAAACAAGTTTCAATGAT+CGG | 0.560280 | 4.3:+3470603 | None:intergenic |
| TGTCAAAATAGTGATGCAAA+TGG | 0.560872 | 4.3:-3462383 | MS.gene55889:CDS |
| TGTGATGGAACCTGGAATGT+TGG | 0.561702 | 4.3:+3469113 | None:intergenic |
| TTGGACTCGAGAAAGTGATT+CGG | 0.562710 | 4.3:-3469390 | MS.gene55889:CDS |
| TCCAGAGATATCTTCCAAGC+TGG | 0.564354 | 4.3:-3460704 | MS.gene55889:intron |
| GAATCAAAACCTGATCATCA+AGG | 0.564712 | 4.3:+3467164 | None:intergenic |
| AAGAGGGTAAAATTTCTTCG+TGG | 0.569335 | 4.3:-3468031 | MS.gene55889:CDS |
| CAAACATTGTGCTTCCACCA+TGG | 0.569894 | 4.3:+3461150 | None:intergenic |
| TGTTGAATCTGAAGCTGCTG+GGG | 0.571772 | 4.3:-3469066 | MS.gene55889:intron |
| TTGAGGGTTTATTACCGCCA+AGG | 0.572207 | 4.3:+3460773 | None:intergenic |
| ATTGGTTGCAGTATGCTGAA+AGG | 0.572229 | 4.3:-3469420 | MS.gene55889:intron |
| AAGCCAGTTTCCAGGTCTGA+AGG | 0.573250 | 4.3:+3463985 | None:intergenic |
| AATAGGGTGGATCCTTCCTA+CGG | 0.573344 | 4.3:+3468814 | None:intergenic |
| CTGTTTCAGATTCAAGGTGA+CGG | 0.573723 | 4.3:-3459517 | MS.gene55889:intron |
| AAACGGTGGCAGAGAAGCAA+AGG | 0.577125 | 4.3:-3459335 | MS.gene55889:intron |
| GAGGAGTTGGTTCATGTCGG+TGG | 0.577148 | 4.3:+3470583 | None:intergenic |
| ATGTTGCGTCTTCAAGATGA+AGG | 0.577278 | 4.3:-3460578 | MS.gene55889:CDS |
| GATGACTTGGAGAAAGAAAG+AGG | 0.577729 | 4.3:-3469646 | MS.gene55889:CDS |
| TGGAATGTTGGAATAGGTGG+AGG | 0.579922 | 4.3:+3469125 | None:intergenic |
| CACGGACTATAGATACTTCA+CGG | 0.580769 | 4.3:+3468538 | None:intergenic |
| AGTGCCGAAGTCGACGCCGA+CGG | 0.584965 | 4.3:+3470550 | None:intergenic |
| TGCAGCGAACGTAGTAGCGA+AGG | 0.586529 | 4.3:+3470516 | None:intergenic |
| TTATTCTGTCAAATGGGATG+CGG | 0.588007 | 4.3:-3467210 | MS.gene55889:CDS |
| ATATTCATCTCTCAAGCTCG+TGG | 0.588260 | 4.3:+3468461 | None:intergenic |
| AATATGGCTGTCATAGCAGT+TGG | 0.589918 | 4.3:-3469313 | MS.gene55889:CDS |
| TTCACCGGTTATTCATATGG+GGG | 0.591878 | 4.3:-3464186 | MS.gene55889:CDS |
| CACACCAATTTCCCCAGCAA+TGG | 0.592509 | 4.3:+3464113 | None:intergenic |
| ACTCCGATCTCAAGGAAACA+AGG | 0.593051 | 4.3:-3470629 | MS.gene55889:CDS |
| GTTGAAACATCCTGTTCTGT+AGG | 0.595111 | 4.3:+3460554 | None:intergenic |
| TTCCATCACATGATGACCCA+CGG | 0.596134 | 4.3:-3469100 | MS.gene55889:CDS |
| CAGGGGAAGCAGAAATGCCA+CGG | 0.596363 | 4.3:-3469605 | MS.gene55889:CDS |
| GTCAATCTTCTTGAGGAAGA+GGG | 0.598448 | 4.3:-3468047 | MS.gene55889:CDS |
| AACAAATTTAACCCCAGATG+AGG | 0.599504 | 4.3:-3462410 | MS.gene55889:CDS |
| AGGGGAAGCAGAAATGCCAC+GGG | 0.599954 | 4.3:-3469604 | MS.gene55889:CDS |
| CTGTGCAGTTGATGGGGTAA+GGG | 0.600354 | 4.3:+3459474 | None:intergenic |
| AACCGTGGGTCATCATGTGA+TGG | 0.600868 | 4.3:+3469098 | None:intergenic |
| AATTTAAAAGGAGAAGACTT+GGG | 0.602381 | 4.3:+3459388 | None:intergenic |
| GACTTCGGCACTCTCGATAA+CGG | 0.603537 | 4.3:-3470539 | MS.gene55889:CDS |
| GAAGCAGAAATGCCACGGGG+AGG | 0.604701 | 4.3:-3469600 | MS.gene55889:CDS |
| TGCACTGATGTACCTATGGA+TGG | 0.609699 | 4.3:+3461880 | None:intergenic |
| AGAAGTGGTCCGAAGTCCCA+TGG | 0.610961 | 4.3:-3461167 | MS.gene55889:CDS |
| CGCCGACGGGTTGGTCAGAG+AGG | 0.612082 | 4.3:+3470564 | None:intergenic |
| ATAGGGTGGATCCTTCCTAC+GGG | 0.612230 | 4.3:+3468815 | None:intergenic |
| ATCACAACAGTAAAAGCTGA+AGG | 0.613555 | 4.3:+3462111 | None:intergenic |
| ATTATAACTTCATCATGTAG+AGG | 0.615662 | 4.3:-3468741 | MS.gene55889:CDS |
| ATGTACCTATGGATGGCTGT+TGG | 0.616981 | 4.3:+3461887 | None:intergenic |
| AGAGAGGAGTTGGTTCATGT+CGG | 0.618402 | 4.3:+3470580 | None:intergenic |
| GCAAGAGCGGCTCTCATGCG+TGG | 0.619075 | 4.3:+3470485 | None:intergenic |
| TTTAGCAGAATTCAGTTCGG+AGG | 0.625569 | 4.3:-3470068 | MS.gene55889:intron |
| TTCAGATTCAAGGTGACGGG+CGG | 0.627609 | 4.3:-3459513 | MS.gene55889:intron |
| TCTGACGGCGAGTGCAAGAG+CGG | 0.629378 | 4.3:+3470472 | None:intergenic |
| AAATGCATAATAGGTTCAGG+AGG | 0.633643 | 4.3:+3461947 | None:intergenic |
| TTTAACCGTGATGATCTGAA+AGG | 0.633770 | 4.3:-3461926 | MS.gene55889:CDS |
| TCTCTGACATCAGCAGCGCA+CGG | 0.638213 | 4.3:+3468520 | None:intergenic |
| ATGCACCAGATATACTCTGT+AGG | 0.640563 | 4.3:-3460808 | MS.gene55889:intron |
| TAGCTGTGTCATAAAGACCA+TGG | 0.640875 | 4.3:-3468120 | MS.gene55889:CDS |
| TGACTTCAAAACCAAATATG+GGG | 0.645184 | 4.3:-3467980 | MS.gene55889:intron |
| CCAATTTCCCCAGCAATGGT+CGG | 0.646717 | 4.3:+3464117 | None:intergenic |
| GCTGAACATGAGAAATAGGG+TGG | 0.647160 | 4.3:+3468801 | None:intergenic |
| CAACAAAACAAGAAAACCGT+GGG | 0.648380 | 4.3:+3469084 | None:intergenic |
| TGCCAACTGTGCAGTTGATG+GGG | 0.648693 | 4.3:+3459468 | None:intergenic |
| GTTTAATGCATAGAGGAACA+TGG | 0.657057 | 4.3:+3468857 | None:intergenic |
| AGCATCCTGCAGCCTCCCCG+TGG | 0.657528 | 4.3:+3469588 | None:intergenic |
| CTTGAAGAAGAAGATGAACG+TGG | 0.660905 | 4.3:-3470286 | MS.gene55889:CDS |
| AATGGGACCGACCATTGCTG+GGG | 0.662960 | 4.3:-3464124 | MS.gene55889:CDS |
| TTGTGGAGACATTCACGCAG+TGG | 0.666494 | 4.3:-3459184 | MS.gene55889:CDS |
| TCAAACACGGCAAATGTTCG+GGG | 0.671594 | 4.3:+3468095 | None:intergenic |
| GCTGGCAAGAGAGCTGAAGT+CGG | 0.672922 | 4.3:-3464054 | MS.gene55889:CDS |
| GCAGTCCTTTCAGATCATCA+CGG | 0.676757 | 4.3:+3461921 | None:intergenic |
| ATGGCTGTTGGAAAAGTGAA+AGG | 0.681632 | 4.3:+3461899 | None:intergenic |
| GGAGCTGAAGAATGGGACCA+TGG | 0.686960 | 4.3:-3461107 | MS.gene55889:intron |
| TCAACAAAACAAGAAAACCG+TGG | 0.688709 | 4.3:+3469083 | None:intergenic |
| AGTGGTCCGAAGTCCCATGG+TGG | 0.688790 | 4.3:-3461164 | MS.gene55889:CDS |
| CTCCTCTCTGACCAACCCGT+CGG | 0.695070 | 4.3:-3470566 | MS.gene55889:CDS |
| AAGTATTCACAAGCTTCCAG+AGG | 0.701309 | 4.3:+3462153 | None:intergenic |
| CCTGGAATCAATGTTAACAG+AGG | 0.702536 | 4.3:-3468700 | MS.gene55889:intron |
| CCGTTTCTCCTGAGACCGTG+AGG | 0.706500 | 4.3:-3469366 | MS.gene55889:CDS |
| GCTGTCATGGAAGAGTACAG+GGG | 0.722316 | 4.3:-3469622 | MS.gene55889:CDS |
| CAATCCACTCGAACAAACGG+TGG | 0.722672 | 4.3:-3459349 | MS.gene55889:CDS |
| GGGGAAGCAGAAATGCCACG+GGG | 0.778748 | 4.3:-3469603 | MS.gene55889:CDS |
| CTTGGGCATAAGTATCACTG+CGG | 0.799446 | 4.3:+3459405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3459141 | 3470678 | 3459141 | ID=MS.gene55889 |
| chr4.3 | mRNA | 3459141 | 3470678 | 3459141 | ID=MS.gene55889.t1;Parent=MS.gene55889 |
| chr4.3 | exon | 3470467 | 3470678 | 3470467 | ID=MS.gene55889.t1.exon1;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3470467 | 3470678 | 3470467 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3470069 | 3470315 | 3470069 | ID=MS.gene55889.t1.exon2;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3470069 | 3470315 | 3470069 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3469558 | 3469683 | 3469558 | ID=MS.gene55889.t1.exon3;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3469558 | 3469683 | 3469558 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3469294 | 3469431 | 3469294 | ID=MS.gene55889.t1.exon4;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3469294 | 3469431 | 3469294 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3469067 | 3469201 | 3469067 | ID=MS.gene55889.t1.exon5;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3469067 | 3469201 | 3469067 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3468701 | 3468958 | 3468701 | ID=MS.gene55889.t1.exon6;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3468701 | 3468958 | 3468701 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3468455 | 3468592 | 3468455 | ID=MS.gene55889.t1.exon7;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3468455 | 3468592 | 3468455 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3468300 | 3468369 | 3468300 | ID=MS.gene55889.t1.exon8;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3468300 | 3468369 | 3468300 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3467981 | 3468194 | 3467981 | ID=MS.gene55889.t1.exon9;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3467981 | 3468194 | 3467981 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3467174 | 3467279 | 3467174 | ID=MS.gene55889.t1.exon10;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3467174 | 3467279 | 3467174 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3463981 | 3464214 | 3463981 | ID=MS.gene55889.t1.exon11;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3463981 | 3464214 | 3463981 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3462288 | 3462452 | 3462288 | ID=MS.gene55889.t1.exon12;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3462288 | 3462452 | 3462288 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3462059 | 3462208 | 3462059 | ID=MS.gene55889.t1.exon13;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3462059 | 3462208 | 3462059 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3461893 | 3461984 | 3461893 | ID=MS.gene55889.t1.exon14;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3461893 | 3461984 | 3461893 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3461108 | 3461189 | 3461108 | ID=MS.gene55889.t1.exon15;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3461108 | 3461189 | 3461108 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3460904 | 3460987 | 3460904 | ID=MS.gene55889.t1.exon16;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3460904 | 3460987 | 3460904 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3460705 | 3460821 | 3460705 | ID=MS.gene55889.t1.exon17;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3460705 | 3460821 | 3460705 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3460511 | 3460621 | 3460511 | ID=MS.gene55889.t1.exon18;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3460511 | 3460621 | 3460511 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3460178 | 3460258 | 3460178 | ID=MS.gene55889.t1.exon19;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3460178 | 3460258 | 3460178 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3459336 | 3459530 | 3459336 | ID=MS.gene55889.t1.exon20;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3459336 | 3459530 | 3459336 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| chr4.3 | exon | 3459141 | 3459248 | 3459141 | ID=MS.gene55889.t1.exon21;Parent=MS.gene55889.t1 |
| chr4.3 | CDS | 3459141 | 3459248 | 3459141 | ID=cds.MS.gene55889.t1;Parent=MS.gene55889.t1 |
| Gene Sequence |
| Protein sequence |
