AlfalfaGEDB | MS.gene56050

M. sativa cultivar XinJiangDaYe / MS.gene56050

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56050.t1	XP_024632130.1	94.4	198	11	0	1	198	76	273	3.20E-103	384.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56050.t1	Q08298	57.4	188	77	3	13	197	204	391	6.1e-55	215.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56050.t1	G7I4D1	94.4	198	11	0	1	198	116	313	2.3e-103	384.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059439	MS.gene56050	0.802118	6.53E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56050.t1	MTR_1g008450	94.444	198	11	0	1	198	116	313	8.51e-140	392
MS.gene56050.t1	MTR_1g008470	79.798	198	40	0	1	198	103	300	1.17e-116	333
MS.gene56050.t1	MTR_1g008500	78.109	201	41	3	1	198	185	385	1.54e-107	313
MS.gene56050.t1	MTR_0312s0030	75.377	199	48	1	1	198	127	325	4.22e-107	310
MS.gene56050.t1	MTR_1g007520	75.377	199	48	1	1	198	127	325	4.22e-107	310
MS.gene56050.t1	MTR_1g008590	74.874	199	49	1	1	198	127	325	5.43e-107	310
MS.gene56050.t1	MTR_1g008530	73.500	200	51	2	1	198	25	224	1.10e-106	305
MS.gene56050.t1	MTR_1g008460	75.253	198	46	1	1	198	103	297	5.70e-106	306
MS.gene56050.t1	MTR_1g008560	74.752	202	47	3	1	198	129	330	1.29e-105	306
MS.gene56050.t1	MTR_1g008510	75.000	200	46	3	1	198	129	326	3.57e-105	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56050.t1	AT5G25610	57.143	189	78	3	12	197	203	391	3.66e-71	221
MS.gene56050.t1	AT1G49320	36.364	198	116	3	11	198	83	280	7.11e-43	145
MS.gene56050.t1	AT1G60390	36.275	204	117	5	1	195	421	620	2.16e-34	128
MS.gene56050.t1	AT1G70370	35.450	189	115	3	12	195	436	622	2.34e-32	122
MS.gene56050.t1	AT1G70370	35.450	189	115	3	12	195	436	622	2.34e-32	122
MS.gene56050.t1	AT1G23760	34.392	189	117	4	12	195	432	618	1.54e-30	117

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Find 39 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACTTGACCCTGTTGT+AGG	0.414196	1.3:+11431818	None:intergenic
AAAGCTTTGTGTGACATCAT+TGG	0.404983	1.3:-11432187	MS.gene56050:CDS
AACTACTTCTCCATCAAGCA+AGG	0.596765	1.3:-11432279	MS.gene56050:CDS
ACAATGGAGTCCTAAACATT+TGG	0.392896	1.3:-11431890	MS.gene56050:CDS
ACAGAAGTAAATGGAGAAAG+TGG	0.530769	1.3:-11432108	MS.gene56050:CDS
ACGTCGCGAGGCAAGAATGT+TGG	0.624134	1.3:+11432348	None:intergenic
ACTGTTTCAACAGAAGTAAA+TGG	0.374289	1.3:-11432117	MS.gene56050:CDS
ACTTGAAAAGCCAAATGTTT+AGG	0.337232	1.3:+11431880	None:intergenic
AGCAAACAGAGTGAAGAAAA+TGG	0.310868	1.3:-11432067	MS.gene56050:CDS
AGCATATGGTATCAAAGGAG+AGG	0.627493	1.3:-11432211	MS.gene56050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTTTCAACAGAAGTAAA+TGG	-	chr1.3:11432065-11432084	MS.gene56050:CDS	30.0%
ACTTGAAAAGCCAAATGTTT+AGG	+	chr1.3:11432305-11432324	None:intergenic	30.0%
ACAATGGAGTCCTAAACATT+TGG	-	chr1.3:11432292-11432311	MS.gene56050:CDS	35.0%
ACAGAAGTAAATGGAGAAAG+TGG	-	chr1.3:11432074-11432093	MS.gene56050:CDS	35.0%
AGCAAACAGAGTGAAGAAAA+TGG	-	chr1.3:11432115-11432134	MS.gene56050:CDS	35.0%
ATAAGTGAGTGTGAAGCATA+TGG	-	chr1.3:11431957-11431976	MS.gene56050:CDS	35.0%
CAAGTGCTCAAAGTTCAAAA+AGG	-	chr1.3:11432320-11432339	MS.gene56050:CDS	35.0%
GAAAATGGGAGAGAACAATT+TGG	-	chr1.3:11432130-11432149	MS.gene56050:CDS	35.0%
GACAGTAAAACACTGCATAA+GGG	+	chr1.3:11432178-11432197	None:intergenic	35.0%
GCAAACAGAGTGAAGAAAAT+GGG	-	chr1.3:11432116-11432135	MS.gene56050:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	11431804	11432400	11431804	ID=MS.gene56050
chr1.3	mRNA	11431804	11432400	11431804	ID=MS.gene56050.t1;Parent=MS.gene56050
chr1.3	exon	11431804	11432400	11431804	ID=MS.gene56050.t1.exon1;Parent=MS.gene56050.t1
chr1.3	CDS	11431804	11432400	11431804	ID=cds.MS.gene56050.t1;Parent=MS.gene56050.t1

Gene Sequence

>MS.gene56050

ATGCAATTCACAAAGACATCAGACCATGGACCAACATTCTTGCCTCGCGACGTTGCTAATTCCATACCATTTTCATCAAACAAAGTGGAAAACATCCTTAACTACTTCTCCATCAAGCAAGGATCGACGGAATCTGAAATTGTGAAGAACACAATAAGTGAGTGTGAAGCATATGGTATCAAAGGAGAGGAAAAGCTTTGTGTGACATCATTGGAATCTATGGTTGATTTCACTACTTCGAAGCTTGGAAACAATGTTGACACTGTTTCAACAGAAGTAAATGGAGAAAGTGGTTTACAACAATATGTAATAGCAAACAGAGTGAAGAAAATGGGAGAGAACAATTTGGTTGTGTGCCACAAACGGAATTACCCTTATGCAGTGTTTTACTGTCACAAAACAGATGCAACTAAAGTGTACTCTTTGCCTCTGGAAGGTGCTGATGGAAGTAGAGTTAAAGCTGTTGCTATTTGTCACACTGATACTTCACAATGGAGTCCTAAACATTTGGCTTTTCAAGTGCTCAAAGTTCAAAAAGGAACTGTTCCAGTTTGCCACATCCTACAACAGGGTCAAGTTGTTTGGTTTTCCAAGTAA

Protein sequence

>MS.gene56050.t1

MQFTKTSDHGPTFLPRDVANSIPFSSNKVENILNYFSIKQGSTESEIVKNTISECEAYGIKGEEKLCVTSLESMVDFTTSKLGNNVDTVSTEVNGESGLQQYVIANRVKKMGENNLVVCHKRNYPYAVFYCHKTDATKVYSLPLEGADGSRVKAVAICHTDTSQWSPKHLAFQVLKVQKGTVPVCHILQQGQVVWFSK