AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56342.t1 MTR_3g010780 96.690 574 18 1 1 573 1 574 0.0 1163
MS.gene56342.t1 MTR_8g042900 72.165 582 152 4 1 573 1 581 0.0 867
MS.gene56342.t1 MTR_8g023150 46.633 594 281 13 1 573 4 582 5.02e-161 472
MS.gene56342.t1 MTR_1g008140 42.832 579 299 12 23 573 33 607 7.37e-155 457
MS.gene56342.t1 MTR_1g083510 39.728 589 313 11 17 571 1 581 4.34e-147 436
MS.gene56342.t1 MTR_3g091380 41.986 574 308 10 22 573 27 597 5.55e-147 437
MS.gene56342.t1 MTR_4g087980 44.583 480 241 7 103 573 53 516 7.03e-140 416
MS.gene56342.t1 MTR_7g112590 38.382 581 321 12 19 569 6 579 2.58e-139 417
MS.gene56342.t1 MTR_1g083470 38.889 576 327 12 17 573 1 570 5.17e-138 413
MS.gene56342.t1 MTR_1g083500 38.889 576 327 12 17 573 1 570 5.17e-138 413
MS.gene56342.t1 MTR_7g050950 42.633 509 267 9 73 569 54 549 2.08e-137 410
MS.gene56342.t1 MTR_8g023310 42.939 524 269 9 70 569 68 585 5.00e-137 410
MS.gene56342.t1 MTR_4g005170 38.204 568 327 8 27 573 11 575 1.52e-135 409
MS.gene56342.t1 MTR_7g108905 41.569 510 284 6 71 569 46 552 5.35e-135 404
MS.gene56342.t1 MTR_1g083490 37.961 569 329 8 26 573 10 575 2.51e-134 404
MS.gene56342.t1 MTR_4g025730 44.358 514 247 11 68 573 27 509 4.43e-134 400
MS.gene56342.t1 MTR_7g112580 39.068 558 304 8 33 573 4 542 7.93e-134 401
MS.gene56342.t1 MTR_4g124550 38.758 596 324 13 4 568 3 588 1.21e-133 402
MS.gene56342.t1 MTR_8g104655 47.174 460 212 8 133 573 94 541 2.73e-133 399
MS.gene56342.t1 MTR_7g050870 43.249 511 262 10 73 569 54 550 1.31e-132 398
MS.gene56342.t1 MTR_1g086190 40.338 533 292 10 56 569 34 559 2.96e-131 395
MS.gene56342.t1 MTR_4g005180 37.746 559 324 8 36 573 2 557 1.67e-130 393
MS.gene56342.t1 MTR_1g083520 42.035 521 271 10 65 571 23 526 2.21e-130 392
MS.gene56342.t1 MTR_4g087970 42.511 454 233 8 134 573 78 517 7.33e-129 387
MS.gene56342.t1 MTR_8g104645 53.582 349 149 5 234 573 28 372 1.16e-128 382
MS.gene56342.t1 MTR_2g044880 42.889 450 238 6 133 573 86 525 4.45e-128 385
MS.gene56342.t1 MTR_4g025690 42.278 518 257 11 68 573 26 513 5.50e-128 385
MS.gene56342.t1 MTR_1g088020 41.308 535 274 11 71 573 29 555 1.90e-127 385
MS.gene56342.t1 MTR_1g054880 44.444 468 228 10 136 573 93 558 4.48e-126 382
MS.gene56342.t1 MTR_7g050980 37.871 573 320 11 15 573 5 555 4.44e-125 379
MS.gene56342.t1 MTR_1g088225 40.935 535 274 12 71 573 29 553 1.01e-123 375
MS.gene56342.t1 MTR_7g108875 42.084 499 259 10 104 573 67 564 1.02e-122 373
MS.gene56342.t1 MTR_2g436040 35.495 555 321 10 26 569 14 542 1.91e-122 374
MS.gene56342.t1 MTR_2g044810 39.571 513 284 8 69 573 40 534 6.12e-122 370
MS.gene56342.t1 MTR_4g025670 42.474 485 238 10 107 573 28 489 2.34e-121 367
MS.gene56342.t1 MTR_1g086210 41.983 474 243 9 123 569 97 565 7.98e-121 369
MS.gene56342.t1 MTR_7g108900 40.074 539 266 14 71 569 35 556 8.70e-121 368
MS.gene56342.t1 MTR_4g124520 39.736 531 271 11 59 573 24 521 1.14e-120 366
MS.gene56342.t1 MTR_4g120280 37.213 567 324 10 24 569 13 568 7.64e-119 364
MS.gene56342.t1 MTR_3g010770 39.595 543 283 7 72 573 37 575 1.72e-118 363
MS.gene56342.t1 MTR_7g108890 40.299 536 277 14 71 573 37 562 5.16e-118 361
MS.gene56342.t1 MTR_2g436050 35.702 563 327 10 26 569 14 560 8.91e-118 360
MS.gene56342.t1 MTR_4g120290 36.189 572 323 11 24 569 13 568 2.58e-117 360
MS.gene56342.t1 MTR_8g042910 39.483 542 281 12 73 573 77 612 3.99e-117 360
MS.gene56342.t1 MTR_3g033690 39.234 548 291 13 38 573 9 526 7.59e-116 354
MS.gene56342.t1 MTR_7g053360 42.324 482 250 10 100 573 66 527 9.68e-115 351
MS.gene56342.t1 MTR_3g008640 44.091 440 224 9 142 573 102 527 8.86e-114 349
MS.gene56342.t1 MTR_3g008720 44.091 440 224 9 142 573 102 527 2.77e-113 347
MS.gene56342.t1 MTR_3g008700 43.636 440 226 9 142 573 102 527 4.21e-113 347
MS.gene56342.t1 MTR_4g035980 42.257 452 235 10 135 573 101 539 3.38e-112 345
MS.gene56342.t1 MTR_7g110490 37.895 570 295 14 27 557 4 553 2.25e-110 342
MS.gene56342.t1 MTR_7g110510 37.895 570 295 14 27 557 4 553 2.25e-110 342
MS.gene56342.t1 MTR_7g110440 38.623 523 275 11 70 557 42 553 1.20e-109 340
MS.gene56342.t1 MTR_2g044660 33.333 636 342 12 4 568 3 627 6.82e-108 337
MS.gene56342.t1 MTR_7g110560 35.829 561 314 15 33 569 7 545 5.78e-104 324
MS.gene56342.t1 MTR_8g104580 41.522 460 205 10 133 573 86 500 1.55e-103 322
MS.gene56342.t1 MTR_0458s0030 55.385 260 112 1 318 573 55 314 1.37e-102 313
MS.gene56342.t1 MTR_1g088040 55.385 260 112 1 318 573 55 314 1.37e-102 313
MS.gene56342.t1 MTR_7g110420 36.617 538 294 15 69 566 41 571 4.34e-94 300
MS.gene56342.t1 MTR_0618s0020 56.388 227 94 2 352 573 2 228 4.91e-89 275
MS.gene56342.t1 MTR_7g110430 34.160 524 265 12 69 557 41 519 5.18e-86 277
MS.gene56342.t1 MTR_2g044810 49.801 251 122 1 327 573 215 465 8.93e-86 274
MS.gene56342.t1 MTR_8g093460 33.204 515 311 13 70 565 43 543 8.10e-83 270
MS.gene56342.t1 MTR_8g088610 41.566 332 181 7 246 569 46 372 8.70e-83 264
MS.gene56342.t1 MTR_5g083620 40.634 347 189 9 234 569 12 352 1.53e-82 262
MS.gene56342.t1 MTR_3g095920 36.603 418 228 12 173 562 145 553 4.02e-76 252
MS.gene56342.t1 MTR_0458s0010 32.895 532 286 15 71 573 29 518 1.10e-73 244
MS.gene56342.t1 MTR_7g107180 38.679 318 178 7 262 573 1 307 1.40e-70 229
MS.gene56342.t1 MTR_7g111560 29.843 573 328 18 28 571 27 554 4.96e-65 222
MS.gene56342.t1 MTR_2g105560 36.422 313 180 7 267 573 40 339 5.07e-65 216
MS.gene56342.t1 MTR_2g039530 39.550 311 144 12 246 538 32 316 1.98e-54 188
MS.gene56342.t1 MTR_6g012800 33.445 299 180 5 268 556 6 295 4.16e-50 176
MS.gene56342.t1 MTR_6g024165 35.621 306 174 8 268 562 41 334 8.75e-49 172
MS.gene56342.t1 MTR_6g088810 34.564 298 174 5 276 562 90 377 4.19e-48 172
MS.gene56342.t1 MTR_7g092780 32.787 305 188 5 268 562 90 387 3.60e-47 170
MS.gene56342.t1 MTR_6g042660 35.036 274 159 7 268 536 37 296 6.75e-47 167
MS.gene56342.t1 MTR_5g083590 31.699 306 155 5 266 566 5 261 3.56e-46 164
MS.gene56342.t1 MTR_7g011530 32.323 297 182 5 270 556 8 295 9.80e-46 164
MS.gene56342.t1 MTR_8g102380 33.667 300 176 5 276 562 88 377 1.34e-45 165
MS.gene56342.t1 MTR_1g033050 32.680 306 188 6 264 562 14 308 2.46e-45 162
MS.gene56342.t1 MTR_1g086540 30.286 350 221 8 223 562 8 344 4.10e-45 163
MS.gene56342.t1 MTR_7g102600 31.068 309 199 4 261 562 92 393 2.43e-44 162
MS.gene56342.t1 MTR_5g095490 34.884 301 174 6 274 562 67 357 2.69e-43 158
MS.gene56342.t1 MTR_2g436070 31.579 323 197 9 26 339 14 321 3.16e-43 159
MS.gene56342.t1 MTR_4g124740 32.237 304 179 10 268 562 54 339 1.91e-41 153
MS.gene56342.t1 MTR_6g042690 33.449 287 171 7 268 546 39 313 6.87e-40 148
MS.gene56342.t1 MTR_5g012600 30.945 307 190 6 268 562 63 359 1.15e-38 145
MS.gene56342.t1 MTR_8g102380 35.366 246 136 5 276 507 88 324 2.27e-36 139
MS.gene56342.t1 MTR_2g073390 30.795 302 191 8 268 562 71 361 9.06e-36 138
MS.gene56342.t1 MTR_2g033970 27.187 320 205 7 257 564 45 348 3.10e-35 136
MS.gene56342.t1 MTR_5g088290 29.730 296 192 5 268 562 48 328 2.42e-34 133
MS.gene56342.t1 MTR_5g088280 29.730 296 191 6 268 562 39 318 8.47e-34 131
MS.gene56342.t1 MTR_5g088300 29.831 295 192 4 268 562 37 316 2.08e-33 130
MS.gene56342.t1 MTR_4g074290 28.758 306 192 8 268 562 71 361 2.39e-33 131
MS.gene56342.t1 MTR_5g093970 28.378 296 202 5 268 562 43 329 8.04e-33 129
MS.gene56342.t1 MTR_8g036225 27.273 319 204 9 256 562 20 322 1.13e-30 122
MS.gene56342.t1 MTR_0009s0350 27.815 302 200 8 268 562 71 361 2.82e-30 122
MS.gene56342.t1 MTR_0009s0340 27.815 302 200 8 268 562 71 361 2.82e-30 122
MS.gene56342.t1 MTR_4g051810 28.428 299 192 8 268 562 37 317 3.56e-28 115
MS.gene56342.t1 MTR_2g436600 25.846 325 201 11 253 564 41 338 1.03e-26 111
MS.gene56342.t1 MTR_6g025590 35.294 170 99 6 263 421 41 210 4.51e-23 98.6
MS.gene56342.t1 MTR_0408s0030 38.614 101 57 2 444 544 36 131 2.90e-16 76.6
MS.gene56342.t1 MTR_4g120830 30.303 165 100 4 70 221 36 198 5.92e-15 74.3
MS.gene56342.t1 MTR_0036s0140 27.686 242 144 9 1 228 4 228 2.01e-14 73.2
MS.gene56342.t1 MTR_8g104765 30.303 165 100 4 70 221 45 207 2.20e-14 72.8
MS.gene56342.t1 MTR_4g120825 30.303 165 100 4 70 221 36 198 2.47e-14 72.4
MS.gene56342.t1 MTR_7g102580 39.796 98 49 2 330 422 61 153 4.43e-14 70.5
MS.gene56342.t1 MTR_7g108790 28.652 178 106 5 49 221 23 184 2.99e-12 66.2
MS.gene56342.t1 MTR_4g130790 25.346 217 136 6 298 505 55 254 8.23e-12 66.2
MS.gene56342.t1 MTR_6g024200 29.762 168 101 6 396 562 125 276 2.55e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56342.t1 AT3G10710 56.818 572 227 8 7 573 5 561 0.0 675
MS.gene56342.t1 AT5G04960 55.363 578 232 9 6 573 3 564 0.0 637
MS.gene56342.t1 AT1G53840 45.051 586 287 15 4 566 7 580 1.99e-157 463
MS.gene56342.t1 AT3G05610 40.175 570 314 10 19 573 8 565 5.06e-149 444
MS.gene56342.t1 AT5G49180 41.480 581 304 12 16 572 1 569 3.98e-146 434
MS.gene56342.t1 AT5G27870 40.138 578 311 10 6 569 2 558 7.87e-146 438
MS.gene56342.t1 AT5G53370 40.949 569 318 10 17 573 23 585 5.08e-142 424
MS.gene56342.t1 AT5G53370 40.949 569 318 10 17 573 59 621 1.48e-141 424
MS.gene56342.t1 AT3G49220 39.399 566 321 11 22 573 39 596 3.69e-135 406
MS.gene56342.t1 AT3G49220 39.399 566 321 11 22 573 84 641 2.36e-134 405
MS.gene56342.t1 AT3G14300 43.992 516 252 12 70 563 459 959 2.83e-134 415
MS.gene56342.t1 AT3G14300 33.333 279 157 9 2 263 6 272 9.32e-30 125
MS.gene56342.t1 AT3G14300 32.544 169 91 5 69 221 270 431 6.03e-16 82.0
MS.gene56342.t1 AT3G05620 40.074 539 254 9 79 573 28 541 1.15e-133 400
MS.gene56342.t1 AT1G11580 39.085 568 317 8 14 570 5 554 8.70e-131 394
MS.gene56342.t1 AT1G11580 39.085 568 317 8 14 570 26 575 2.23e-130 393
MS.gene56342.t1 AT3G43270 42.127 489 266 8 97 573 42 525 3.58e-130 391
MS.gene56342.t1 AT3G06830 38.787 544 302 11 51 573 35 568 1.72e-127 385
MS.gene56342.t1 AT2G26450 36.800 625 318 15 4 570 3 608 3.18e-127 386
MS.gene56342.t1 AT3G14310 40.147 543 269 12 70 569 59 588 1.17e-125 382
MS.gene56342.t1 AT1G53830 41.021 529 276 11 70 569 62 583 6.08e-125 380
MS.gene56342.t1 AT4G33230 38.088 617 316 15 4 570 3 603 7.22e-125 380
MS.gene56342.t1 AT4G33220 40.719 501 263 9 99 573 31 523 4.83e-124 375
MS.gene56342.t1 AT2G45220 42.578 512 256 13 70 573 30 511 3.73e-122 370
MS.gene56342.t1 AT4G02330 44.025 477 224 10 139 573 96 571 7.18e-122 371
MS.gene56342.t1 AT2G26440 39.509 529 293 9 62 573 29 547 1.97e-121 369
MS.gene56342.t1 AT1G23200 44.662 459 213 9 139 568 103 549 1.28e-119 365
MS.gene56342.t1 AT1G02810 40.000 565 280 14 61 573 20 577 3.20e-119 365
MS.gene56342.t1 AT2G47550 43.818 461 230 9 136 569 96 554 1.23e-118 362
MS.gene56342.t1 AT5G51500 40.980 510 280 10 74 573 42 540 7.53e-117 357
MS.gene56342.t1 AT5G51490 40.698 516 273 12 74 573 38 536 3.82e-116 355
MS.gene56342.t1 AT4G33220 48.368 337 163 4 244 573 70 402 2.77e-113 343
MS.gene56342.t1 AT3G60730 40.215 465 251 9 131 573 60 519 1.47e-110 340
MS.gene56342.t1 AT3G59010 40.725 469 245 12 123 573 75 528 2.65e-109 337
MS.gene56342.t1 AT4G02320 37.014 489 275 8 101 569 39 514 9.23e-108 333
MS.gene56342.t1 AT2G43050 40.225 445 241 8 134 573 92 516 1.02e-107 333
MS.gene56342.t1 AT3G47400 37.214 524 306 9 65 573 79 594 5.46e-107 333
MS.gene56342.t1 AT4G03930 43.382 408 218 6 171 573 125 524 7.92e-107 331
MS.gene56342.t1 AT4G02300 37.603 484 277 8 101 569 55 528 3.01e-106 330
MS.gene56342.t1 AT3G10720 36.364 539 292 11 73 569 82 611 3.41e-106 332
MS.gene56342.t1 AT1G11590 42.787 409 219 7 171 573 125 524 5.63e-105 326
MS.gene56342.t1 AT5G04970 35.978 542 296 12 74 573 88 620 4.30e-104 327
MS.gene56342.t1 AT3G27980 43.284 402 215 6 175 573 106 497 1.18e-102 319
MS.gene56342.t1 AT4G00190 41.084 443 227 10 136 573 61 474 1.55e-102 318
MS.gene56342.t1 AT5G20860 39.013 446 240 10 142 573 111 538 1.41e-99 312
MS.gene56342.t1 AT4G15980 44.318 352 189 3 228 572 350 701 1.68e-95 306
MS.gene56342.t1 AT4G15980 30.723 166 102 4 73 233 51 208 1.86e-15 80.1
MS.gene56342.t1 AT4G15980 44.318 352 189 3 228 572 360 711 2.65e-95 306
MS.gene56342.t1 AT4G15980 30.723 166 102 4 73 233 61 218 1.73e-15 80.5
MS.gene56342.t1 AT3G10720 49.807 259 126 1 319 573 1 259 9.63e-90 278
MS.gene56342.t1 AT3G62170 32.203 590 340 13 30 570 7 585 9.91e-90 288
MS.gene56342.t1 AT2G47030 32.034 590 338 11 30 568 6 583 1.56e-89 288
MS.gene56342.t1 AT2G47040 31.667 600 334 14 30 568 6 590 3.65e-86 279
MS.gene56342.t1 AT5G09760 34.733 524 300 17 64 561 39 546 1.51e-83 271
MS.gene56342.t1 AT5G09760 34.733 524 300 17 64 561 65 572 4.72e-83 270
MS.gene56342.t1 AT5G64640 32.314 523 305 12 70 561 93 597 4.50e-82 269
MS.gene56342.t1 AT1G11370 48.249 257 127 2 256 506 32 288 3.08e-81 256
MS.gene56342.t1 AT5G20860 36.235 425 211 9 142 552 111 489 1.08e-80 263
MS.gene56342.t1 AT2G36710 33.841 328 193 5 242 562 75 385 1.09e-50 180
MS.gene56342.t1 AT1G05310 31.410 312 197 5 261 562 84 388 1.39e-47 171
MS.gene56342.t1 AT3G29090 33.445 299 180 4 268 556 7 296 3.16e-47 168
MS.gene56342.t1 AT5G19730 33.136 338 199 7 242 562 54 381 4.65e-47 169
MS.gene56342.t1 AT3G49220 31.268 339 216 9 22 351 84 414 2.70e-44 163
MS.gene56342.t1 AT1G44980 43.915 189 104 1 246 432 54 242 5.03e-44 157
MS.gene56342.t1 AT2G21610 30.492 305 195 6 268 570 51 340 4.11e-43 158
MS.gene56342.t1 AT2G21610 30.492 305 195 6 268 570 56 345 4.25e-43 158
MS.gene56342.t1 AT2G36700 31.208 298 192 4 270 562 44 333 1.58e-42 155
MS.gene56342.t1 AT5G55590 33.876 307 181 7 268 562 82 378 1.49e-39 149
MS.gene56342.t1 AT3G17060 27.760 317 205 8 257 563 35 337 6.54e-39 146
MS.gene56342.t1 AT5G07420 29.341 334 209 9 244 562 34 355 1.11e-38 146
MS.gene56342.t1 AT5G47500 30.619 307 191 6 268 562 61 357 2.02e-38 145
MS.gene56342.t1 AT5G07430 28.947 304 192 7 268 562 67 355 2.75e-38 145
MS.gene56342.t1 AT5G55590 36.111 252 141 6 268 507 82 325 7.04e-36 137
MS.gene56342.t1 AT2G19150 29.967 307 188 7 268 562 41 332 2.43e-35 136
MS.gene56342.t1 AT1G69940 28.188 298 189 8 275 562 73 355 4.66e-34 133
MS.gene56342.t1 AT5G61680 26.882 372 231 10 201 562 18 358 8.98e-34 132
MS.gene56342.t1 AT5G07410 28.188 298 189 8 275 562 73 355 1.48e-33 131
MS.gene56342.t1 AT5G18990 27.687 307 200 6 267 562 28 323 2.18e-33 130
MS.gene56342.t1 AT3G24130 27.215 316 194 8 265 562 31 328 7.64e-31 123
MS.gene56342.t1 AT5G26810 27.362 307 204 6 268 562 34 333 2.38e-30 122
MS.gene56342.t1 AT2G47280 26.837 313 206 7 268 568 35 336 1.79e-29 119
MS.gene56342.t1 AT2G19150 30.159 252 151 6 268 507 41 279 2.12e-28 115
MS.gene56342.t1 AT2G01610 30.286 175 102 7 70 225 45 218 3.41e-14 72.4
MS.gene56342.t1 AT4G25260 29.000 200 119 7 33 221 7 194 1.24e-13 70.5
MS.gene56342.t1 AT1G14890 26.087 207 126 6 29 225 27 216 1.57e-13 70.5
MS.gene56342.t1 AT3G62820 32.258 155 94 5 73 221 37 186 8.19e-12 65.1
MS.gene56342.t1 AT3G47670 25.523 239 155 5 4 228 43 272 2.51e-11 65.1
MS.gene56342.t1 AT1G62760 28.750 160 100 4 70 221 148 301 8.20e-11 63.9

Find 85 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAGAATGCAACATTTA+TGG 0.133360 3.1:-6629491 MS.gene56342:CDS
TTATCCTCAATAATCTTTAT+TGG 0.155645 3.1:-6632951 MS.gene56342:CDS
TATGATTGTGATTCTCTTTC+GGG 0.163725 3.1:+6632977 None:intergenic
TATTGCAACATTTCACCTTA+TGG 0.209971 3.1:-6628681 MS.gene56342:CDS
CACTAAACACTCTCAATTTA+AGG 0.230641 3.1:-6630924 MS.gene56342:CDS
CTTGATCAGCACTTGTCATT+AGG 0.242637 3.1:+6629582 None:intergenic
GTAATACCTGTGTTCATGTT+AGG 0.244770 3.1:+6629353 None:intergenic
TTATGATTGTGATTCTCTTT+CGG 0.248208 3.1:+6632976 None:intergenic
TGTCATATATTAGATTTAAA+AGG 0.279480 3.1:+6628363 None:intergenic
GTCCTCTTCTTACTCTTATT+AGG 0.292543 3.1:+6630739 None:intergenic
ATGACTTCTTCAATTGTATC+TGG 0.299790 3.1:-6630631 MS.gene56342:CDS
TTGATCAGCACTTGTCATTA+GGG 0.305728 3.1:+6629583 None:intergenic
CTTGTTAATCCATGTTATTA+TGG 0.318803 3.1:+6630948 None:intergenic
ATGAAAATGAAACACCAAAA+TGG 0.333710 3.1:-6630882 MS.gene56342:CDS
AAATGGAATGTGATGATTAT+TGG 0.343715 3.1:-6630661 MS.gene56342:CDS
ACAAACAGCTTTCATAGAAT+TGG 0.348007 3.1:+6632848 None:intergenic
AAATGATGTTAGAAGCAAAA+AGG 0.379674 3.1:-6633004 MS.gene56342:CDS
TACCAACAAACTTGCATTGA+AGG 0.380394 3.1:-6631054 MS.gene56342:CDS
ATTGAAATACTCAATAGCTT+TGG 0.387409 3.1:+6632704 None:intergenic
AATGGCTTCATTCAAAAGAT+AGG 0.393533 3.1:-6630864 MS.gene56342:CDS
GTTGTAATTGCAGCTGTATT+AGG 0.404928 3.1:-6632927 MS.gene56342:CDS
ATGTCTTTCTTCAAATCCTA+TGG 0.410443 3.1:-6633047 MS.gene56342:CDS
TATGCAGAATTTCAGAATGT+TGG 0.411955 3.1:-6628513 MS.gene56342:CDS
ACCCAAGGTAACCAACCATT+TGG 0.414876 3.1:+6628564 None:intergenic
AGCCTTCAATGCAAGTTTGT+TGG 0.416410 3.1:+6631052 None:intergenic
ATCCAAATGGTTGGTTACCT+TGG 0.417105 3.1:-6628566 MS.gene56342:CDS
CTATTCTTTGTTACAGCACC+TGG 0.424884 3.1:+6628489 None:intergenic
TCCAAATGGTTGGTTACCTT+GGG 0.427039 3.1:-6628565 MS.gene56342:CDS
AACAGCCTTAGCTCTATTGT+TGG 0.431188 3.1:-6632795 MS.gene56342:CDS
AACTTGCATTGAAGGCTTTG+AGG 0.434420 3.1:-6631046 MS.gene56342:CDS
ATAACTCATTGACTACTTCA+AGG 0.447687 3.1:-6632584 MS.gene56342:CDS
TAATACCTGTGTTCATGTTA+GGG 0.451328 3.1:+6629354 None:intergenic
CTTAGCTCTATTGTTGGCTC+AGG 0.452926 3.1:-6632789 MS.gene56342:CDS
ACATCACTCAAGTTTCCATA+AGG 0.453833 3.1:+6628666 None:intergenic
GGGGTGCAAATAGCTGTGTT+TGG 0.461469 3.1:-6629674 MS.gene56342:intron
TGTCCATGCATAGGTAACTT+TGG 0.471491 3.1:+6629410 None:intergenic
CTTTGATCTATGTGAAGAAA+GGG 0.476833 3.1:-6630717 MS.gene56342:CDS
ACTTTGATCTATGTGAAGAA+AGG 0.491788 3.1:-6630718 MS.gene56342:CDS
TTCTCTATAGAATTGTCGAT+TGG 0.495893 3.1:+6629505 None:intergenic
GATAGATGGATTCCTGCATC+AGG 0.496589 3.1:-6628390 MS.gene56342:CDS
TGCAAATAGCTGTGTTTGGA+AGG 0.502336 3.1:-6629670 MS.gene56342:intron
CAAACATGGTTAAGTGCTGC+AGG 0.516841 3.1:-6632525 MS.gene56342:intron
GATAACTTAAACAACTCCTC+AGG 0.525559 3.1:+6632753 None:intergenic
GATATTGTTGTTGCTAAAGA+TGG 0.526341 3.1:-6630805 MS.gene56342:CDS
TTAAAAGGTGAACCTGATGC+AGG 0.527666 3.1:+6628378 None:intergenic
AGTGATGTTAAAGTATACCT+TGG 0.528468 3.1:-6628651 MS.gene56342:CDS
AGTTTACATGAGAACAAGAA+TGG 0.528669 3.1:-6628601 MS.gene56342:CDS
AACACCAATAAAGATTATTG+AGG 0.530565 3.1:+6632947 None:intergenic
AAGTATACCTTGGAAGACCT+TGG 0.531313 3.1:-6628641 MS.gene56342:CDS
GCTACTGCTTGGTGCTTCTG+TGG 0.541091 3.1:+6629605 None:intergenic
AATTCTTCCAAGGTCTTCCA+AGG 0.542477 3.1:+6628634 None:intergenic
TACATGAGAACAAGAATGGA+TGG 0.544255 3.1:-6628597 MS.gene56342:CDS
TTGTCATTAGGGCTACTGCT+TGG 0.547037 3.1:+6629594 None:intergenic
TAACAAAGAATAGAGTGAAG+TGG 0.549271 3.1:-6628479 MS.gene56342:CDS
ACAAATCACTATCACAGCAC+AGG 0.558276 3.1:-6629387 MS.gene56342:CDS
ATCTGGCAAGCTTAATGTTG+TGG 0.559296 3.1:-6630614 MS.gene56342:CDS
GTGGTTGAGTAATTCTTCCA+AGG 0.559304 3.1:+6628624 None:intergenic
GTTGTTGCTAAAGATGGTAG+TGG 0.560858 3.1:-6630799 MS.gene56342:CDS
TAACTCATTGACTACTTCAA+GGG 0.562940 3.1:-6632583 MS.gene56342:CDS
GTGATTTGTTGTCCATGCAT+AGG 0.564115 3.1:+6629401 None:intergenic
AAAGAATAGAGTGAAGTGGA+AGG 0.572886 3.1:-6628475 MS.gene56342:CDS
ATGGGATTTCGCAATACAGC+AGG 0.575293 3.1:-6629629 MS.gene56342:CDS
CTGAGCCAACAATAGAGCTA+AGG 0.575807 3.1:+6632790 None:intergenic
AAGAATAGAGTGAAGTGGAA+GGG 0.576530 3.1:-6628474 MS.gene56342:CDS
AATGTTGCAGTTGAAAATGT+TGG 0.587854 3.1:+6630583 None:intergenic
ATGCCAAAGTTACCTATGCA+TGG 0.594335 3.1:-6629413 MS.gene56342:CDS
CAAATCACTATCACAGCACA+GGG 0.598017 3.1:-6629386 MS.gene56342:CDS
GGTGCTGAGTTTCCTACCCA+AGG 0.599782 3.1:+6628549 None:intergenic
CATAATAACATGGATTAACA+AGG 0.601433 3.1:-6630947 MS.gene56342:CDS
GAATTTCAGAATGTTGGACC+AGG 0.604828 3.1:-6628507 MS.gene56342:CDS
TCTTGTTCTCATGTAAACTG+TGG 0.608649 3.1:+6628605 None:intergenic
TTCCTAATAAGAGTAAGAAG+AGG 0.614803 3.1:-6630741 MS.gene56342:CDS
AATTTCATAGCAAGAGACAT+GGG 0.617671 3.1:-6629647 MS.gene56342:CDS
TAGGAAACTACTTAGTACAA+AGG 0.618391 3.1:-6630845 MS.gene56342:CDS
GGATTTACTATGAAAATGTG+AGG 0.620446 3.1:-6630696 MS.gene56342:CDS
ATTGAGTATTTCAATGAACA+TGG 0.622296 3.1:-6632696 MS.gene56342:CDS
AATGGTTGGTTACCTTGGGT+AGG 0.636618 3.1:-6628561 MS.gene56342:CDS
AATGTGATGATTATTGGTGA+TGG 0.642955 3.1:-6630655 MS.gene56342:CDS
GAATTTCATAGCAAGAGACA+TGG 0.647909 3.1:-6629648 MS.gene56342:CDS
GGCAAGCTTAATGTTGTGGA+TGG 0.651622 3.1:-6630610 MS.gene56342:CDS
AGGAAAAGATGTTCAACCTG+AGG 0.665526 3.1:-6632769 MS.gene56342:CDS
ACAGTCTTGCCATAATAACA+TGG 0.667941 3.1:-6630957 MS.gene56342:CDS
ACTGACCCTAACATGAACAC+AGG 0.671597 3.1:-6629359 MS.gene56342:intron
GGTAGATGATAGTAGAACCA+AGG 0.675190 3.1:-6632658 MS.gene56342:CDS
GATTTACTATGAAAATGTGA+GGG 0.685200 3.1:-6630695 MS.gene56342:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTAAATTAATTTTT+AGG + chr3.1:6629347-6629366 None:intergenic 10.0%
!!! TAAATTTTAAACATATAACA+TGG + chr3.1:6629715-6629734 None:intergenic 10.0%
!!! TTTTATTTATTCAATTTCAA+TGG + chr3.1:6629860-6629879 None:intergenic 10.0%
!! AAATACGATAACAAATTATA+TGG - chr3.1:6632412-6632431 MS.gene56342:intron 15.0%
!! AATGATTAATGAATATAACA+AGG - chr3.1:6632247-6632266 MS.gene56342:intron 15.0%
!! ATATATTTGAATACAAAATG+TGG - chr3.1:6632573-6632592 MS.gene56342:CDS 15.0%
!! TATGAATAATTGGTATTTAT+TGG + chr3.1:6629504-6629523 None:intergenic 15.0%
!! TGTTCTTTCTAATATTAATT+TGG - chr3.1:6628942-6628961 MS.gene56342:intron 15.0%
!! TTGACTATATATATAGTATA+TGG + chr3.1:6629067-6629086 None:intergenic 15.0%
!!! AAAACGAATTAAACTTTTTT+AGG - chr3.1:6629362-6629381 MS.gene56342:CDS 15.0%
!!! AAACGAATTAAACTTTTTTA+GGG - chr3.1:6629363-6629382 MS.gene56342:CDS 15.0%
!!! AATCATAGGAAAAATTATTT+TGG - chr3.1:6630933-6630952 MS.gene56342:CDS 15.0%
!!! AATTTACTACTATTTCTTTT+GGG + chr3.1:6631248-6631267 None:intergenic 15.0%
!!! CTTTTTTGTTCAATATTTTT+TGG - chr3.1:6631291-6631310 MS.gene56342:intron 15.0%
!!! TTCATTTTTTTTGTTTTCTT+GGG - chr3.1:6631717-6631736 MS.gene56342:intron 15.0%
!!! TTTCATTTTTTTTGTTTTCT+TGG - chr3.1:6631716-6631735 MS.gene56342:intron 15.0%
!!! TTTTTTTATTAACATGTCAT+CGG + chr3.1:6630141-6630160 None:intergenic 15.0%
!! AAAAGTTAGTTAGTAAAACA+AGG + chr3.1:6632684-6632703 None:intergenic 20.0%
!! AAATACGATAACAAATTAGA+TGG - chr3.1:6632186-6632205 MS.gene56342:intron 20.0%
!! AATATGTGGTTAATTATGTT+CGG - chr3.1:6632222-6632241 MS.gene56342:intron 20.0%
!! AATTAACCACATATTTAAAC+TGG + chr3.1:6632217-6632236 None:intergenic 20.0%
!! AGAAATTATGAAATTCAAAC+AGG + chr3.1:6629655-6629674 None:intergenic 20.0%
!! ATTAACCACATATTTAAACT+GGG + chr3.1:6632216-6632235 None:intergenic 20.0%
!! CATACATAAATCATTTCAAA+TGG - chr3.1:6630007-6630026 MS.gene56342:intron 20.0%
!! GAAAATTAAATGTGTGAATT+TGG + chr3.1:6629133-6629152 None:intergenic 20.0%
!! TAATTGACCACATATTTAAA+CGG + chr3.1:6632444-6632463 None:intergenic 20.0%
!! TTAAAAGACAAAAGATTGAA+CGG + chr3.1:6631421-6631440 None:intergenic 20.0%
!! TTATCCTCAATAATCTTTAT+TGG - chr3.1:6628461-6628480 MS.gene56342:CDS 20.0%
!! TTTAATTGTAAATAGTTTCG+TGG + chr3.1:6629944-6629963 None:intergenic 20.0%
!! TTTGTAAATGCTGAAAAAAT+AGG - chr3.1:6630331-6630350 MS.gene56342:intron 20.0%
!!! AATTATTTTGGTTCTTGTTT+TGG - chr3.1:6630945-6630964 MS.gene56342:CDS 20.0%
!!! CAATTTACTACTATTTCTTT+TGG + chr3.1:6631249-6631268 None:intergenic 20.0%
!!! CATTTCATTTTATTGATAAG+AGG - chr3.1:6632132-6632151 MS.gene56342:intron 20.0%
!!! TAATTTGTTATCGTATTTTG+AGG + chr3.1:6632184-6632203 None:intergenic 20.0%
!!! TATTTAGTATAGATTTTCTC+CGG + chr3.1:6631336-6631355 None:intergenic 20.0%
!!! TCATTTTTTTTGTTTTCTTG+GGG - chr3.1:6631718-6631737 MS.gene56342:intron 20.0%
!!! TCTTATTTAAGCTTATCTAT+TGG - chr3.1:6630989-6631008 MS.gene56342:CDS 20.0%
!!! TTTTGGTTTTTATGTATGTT+TGG - chr3.1:6630962-6630981 MS.gene56342:CDS 20.0%
! AAATGATGTTAGAAGCAAAA+AGG - chr3.1:6628408-6628427 MS.gene56342:CDS 25.0%
! AAATGGAATGTGATGATTAT+TGG - chr3.1:6630751-6630770 MS.gene56342:CDS 25.0%
! AACACCAATAAAGATTATTG+AGG + chr3.1:6628468-6628487 None:intergenic 25.0%
! AATATGTGGTCAATTATGTT+CGG - chr3.1:6632448-6632467 MS.gene56342:intron 25.0%
! ATGAAAATGAAACACCAAAA+TGG - chr3.1:6630530-6630549 MS.gene56342:intron 25.0%
! ATTGAAATACTCAATAGCTT+TGG + chr3.1:6628711-6628730 None:intergenic 25.0%
! ATTGAGTATTTCAATGAACA+TGG - chr3.1:6628716-6628735 MS.gene56342:intron 25.0%
! CATTTCAAATGGAAGTTTAA+TGG - chr3.1:6630018-6630037 MS.gene56342:intron 25.0%
! CTCATGTTCTTATGAATAAT+TGG + chr3.1:6629514-6629533 None:intergenic 25.0%
! CTTGTTAATCCATGTTATTA+TGG + chr3.1:6630467-6630486 None:intergenic 25.0%
! GATTTACTATGAAAATGTGA+GGG - chr3.1:6630717-6630736 MS.gene56342:CDS 25.0%
! GGTGATTAATGAATATAACA+AGG - chr3.1:6632469-6632488 MS.gene56342:intron 25.0%
! GGTGGTTAATAAATAAAACA+AGG + chr3.1:6632663-6632682 None:intergenic 25.0%
! TATAGAGAATGCAACATTTA+TGG - chr3.1:6631921-6631940 MS.gene56342:intron 25.0%
! TATCCAAACATTAGTAACTT+GGG - chr3.1:6631688-6631707 MS.gene56342:intron 25.0%
! TATGTGATACAACTTATGTT+TGG - chr3.1:6630108-6630127 MS.gene56342:intron 25.0%
! TCTGCATAAAAAATTGTATC+TGG + chr3.1:6632887-6632906 None:intergenic 25.0%
! TTATCCAAACATTAGTAACT+TGG - chr3.1:6631687-6631706 MS.gene56342:intron 25.0%
! TTATGATTGTGATTCTCTTT+CGG + chr3.1:6628439-6628458 None:intergenic 25.0%
! TTCTACAACGAAAGATAAAA+TGG + chr3.1:6630243-6630262 None:intergenic 25.0%
! TTCTATCAAAAATAGCTCAT+TGG - chr3.1:6631573-6631592 MS.gene56342:intron 25.0%
! TTGATAGAACATTATGACAT+TGG + chr3.1:6631562-6631581 None:intergenic 25.0%
!! CATAATAACATGGATTAACA+AGG - chr3.1:6630465-6630484 MS.gene56342:intron 25.0%
!! GCTAATTCATTTTCAAAACT+AGG - chr3.1:6629154-6629173 MS.gene56342:intron 25.0%
!! TAATAAAGCGCTTATCATAT+AGG + chr3.1:6631661-6631680 None:intergenic 25.0%
!! TTTTCAAAACTAGGTACTTT+AGG - chr3.1:6629163-6629182 MS.gene56342:intron 25.0%
!! TTTTTATAAGTTTCTTCCAC+CGG - chr3.1:6631314-6631333 MS.gene56342:intron 25.0%
!!! AAACATGTTTTGAAGTCTAA+AGG - chr3.1:6629286-6629305 MS.gene56342:intron 25.0%
!!! AACATGTTTTGAAGTCTAAA+GGG - chr3.1:6629287-6629306 MS.gene56342:intron 25.0%
!!! AAGAACATGAGTTTGATTTT+TGG - chr3.1:6629523-6629542 MS.gene56342:CDS 25.0%
!!! AGTTTTAGTACATGAATCAT+AGG - chr3.1:6630919-6630938 MS.gene56342:CDS 25.0%
!!! CATTTTTTTTGTTTTCTTGG+GGG - chr3.1:6631719-6631738 MS.gene56342:intron 25.0%
!!! CTAACTTTTTCTCTTTTAAC+AGG - chr3.1:6632695-6632714 MS.gene56342:CDS 25.0%
!!! GATGGTTTTATTAATCCAAA+TGG - chr3.1:6632833-6632852 MS.gene56342:CDS 25.0%
!!! GTTTTATTAATCCAAATGGT+TGG - chr3.1:6632837-6632856 MS.gene56342:CDS 25.0%
!!! TTTGGTGTTTCATTTTCATA+AGG + chr3.1:6630529-6630548 None:intergenic 25.0%
!!! TTTTTGATGATCTTCAAACA+TGG - chr3.1:6628873-6628892 MS.gene56342:intron 25.0%
AACATTATGACATTGGAACA+AGG + chr3.1:6631555-6631574 None:intergenic 30.0%
AATGGCTTCATTCAAAAGAT+AGG - chr3.1:6630548-6630567 MS.gene56342:intron 30.0%
AATGTGATGATTATTGGTGA+TGG - chr3.1:6630757-6630776 MS.gene56342:CDS 30.0%
AATGTTGCAGTTGAAAATGT+TGG + chr3.1:6630832-6630851 None:intergenic 30.0%
AATTTCATAGCAAGAGACAT+GGG - chr3.1:6631765-6631784 MS.gene56342:intron 30.0%
ACAAACAGCTTTCATAGAAT+TGG + chr3.1:6628567-6628586 None:intergenic 30.0%
ACTTTGATCTATGTGAAGAA+AGG - chr3.1:6630694-6630713 MS.gene56342:CDS 30.0%
AGGCTTAAATCACTACTATA+AGG + chr3.1:6629018-6629037 None:intergenic 30.0%
AGTGATGTTAAAGTATACCT+TGG - chr3.1:6632761-6632780 MS.gene56342:CDS 30.0%
AGTTAGTTAGTAAAACAAGG+TGG + chr3.1:6632681-6632700 None:intergenic 30.0%
AGTTTACATGAGAACAAGAA+TGG - chr3.1:6632811-6632830 MS.gene56342:CDS 30.0%
ATGACTTCTTCAATTGTATC+TGG - chr3.1:6630781-6630800 MS.gene56342:CDS 30.0%
ATGTCTTTCTTCAAATCCTA+TGG - chr3.1:6628365-6628384 MS.gene56342:CDS 30.0%
ATTCCCAAGTTACTAATGTT+TGG + chr3.1:6631694-6631713 None:intergenic 30.0%
CACTAAACACTCTCAATTTA+AGG - chr3.1:6630488-6630507 MS.gene56342:intron 30.0%
CTTTGATCTATGTGAAGAAA+GGG - chr3.1:6630695-6630714 MS.gene56342:CDS 30.0%
GGATTTACTATGAAAATGTG+AGG - chr3.1:6630716-6630735 MS.gene56342:CDS 30.0%
GTTAATGACGTTCAAAATTG+TGG + chr3.1:6632539-6632558 None:intergenic 30.0%
GTTTACCCAGTTTAAATATG+TGG - chr3.1:6632208-6632227 MS.gene56342:intron 30.0%
TAACAAAGAATAGAGTGAAG+TGG - chr3.1:6632933-6632952 MS.gene56342:CDS 30.0%
TAACCACTTAACAAATTGCT+TGG + chr3.1:6629474-6629493 None:intergenic 30.0%
TAATACCTGTGTTCATGTTA+GGG + chr3.1:6632061-6632080 None:intergenic 30.0%
TAGGAAACTACTTAGTACAA+AGG - chr3.1:6630567-6630586 MS.gene56342:intron 30.0%
TATGATTGTGATTCTCTTTC+GGG + chr3.1:6628438-6628457 None:intergenic 30.0%
TATGCAGAATTTCAGAATGT+TGG - chr3.1:6632899-6632918 MS.gene56342:CDS 30.0%
TATTGCAACATTTCACCTTA+TGG - chr3.1:6632731-6632750 MS.gene56342:CDS 30.0%
TCAAAACATGTTTGACTACA+TGG + chr3.1:6629279-6629298 None:intergenic 30.0%
TGAGGGTAGAAAAAACTAAA+TGG - chr3.1:6630734-6630753 MS.gene56342:CDS 30.0%
TGTTGAAATTCGAAGAACTT+TGG - chr3.1:6631369-6631388 MS.gene56342:intron 30.0%
TTCCTAATAAGAGTAAGAAG+AGG - chr3.1:6630671-6630690 MS.gene56342:CDS 30.0%
TTCTCTATAGAATTGTCGAT+TGG + chr3.1:6631910-6631929 None:intergenic 30.0%
! ACATTTTCAACTGCAACATT+TGG - chr3.1:6630832-6630851 MS.gene56342:CDS 30.0%
! ATAACTCATTGACTACTTCA+AGG - chr3.1:6628828-6628847 MS.gene56342:intron 30.0%
! ATGAACATGGTGTTTTCAAA+AGG - chr3.1:6628729-6628748 MS.gene56342:intron 30.0%
! GAAAAATTGTAGGGTTCTTT+TGG - chr3.1:6628784-6628803 MS.gene56342:intron 30.0%
! GATATTGTTGTTGCTAAAGA+TGG - chr3.1:6630607-6630626 MS.gene56342:CDS 30.0%
! GTTTATGCCGTTTAAATATG+TGG - chr3.1:6632434-6632453 MS.gene56342:intron 30.0%
! TAACTCATTGACTACTTCAA+GGG - chr3.1:6628829-6628848 MS.gene56342:intron 30.0%
! TCTTTTGAATGAAGCCATTT+TGG + chr3.1:6630547-6630566 None:intergenic 30.0%
! TGTACTCTGTAGAGTTTTTA+AGG + chr3.1:6630429-6630448 None:intergenic 30.0%
!! ACAATTTTTCAAAGCTTCCT+TGG + chr3.1:6628774-6628793 None:intergenic 30.0%
!! ACATGAGTTTGATTTTTGGA+TGG - chr3.1:6629527-6629546 MS.gene56342:CDS 30.0%
!! AGGAAGCTTTGAAAAATTGT+AGG - chr3.1:6628774-6628793 MS.gene56342:intron 30.0%
!! GGAACAGTTGATTTCATTTT+TGG - chr3.1:6631942-6631961 MS.gene56342:intron 30.0%
!! GGAAGCTTTGAAAAATTGTA+GGG - chr3.1:6628775-6628794 MS.gene56342:intron 30.0%
!! TGTCTTTTAAGTAACACAGT+TGG - chr3.1:6631431-6631450 MS.gene56342:intron 30.0%
AAAGAATAGAGTGAAGTGGA+AGG - chr3.1:6632937-6632956 MS.gene56342:CDS 35.0%
AAATATATACCTGCAAGTCG+TGG + chr3.1:6632561-6632580 None:intergenic 35.0%
AAGAATAGAGTGAAGTGGAA+GGG - chr3.1:6632938-6632957 MS.gene56342:CDS 35.0%
ACAGTCTTGCCATAATAACA+TGG - chr3.1:6630455-6630474 MS.gene56342:intron 35.0%
ACATCACTCAAGTTTCCATA+AGG + chr3.1:6632749-6632768 None:intergenic 35.0%
GAATTTCATAGCAAGAGACA+TGG - chr3.1:6631764-6631783 MS.gene56342:intron 35.0%
GATAACTTAAACAACTCCTC+AGG + chr3.1:6628662-6628681 None:intergenic 35.0%
GTAATACCTGTGTTCATGTT+AGG + chr3.1:6632062-6632081 None:intergenic 35.0%
GTCAATGGCATTAAAATCGT+TGG - chr3.1:6632374-6632393 MS.gene56342:intron 35.0%
GTCCTCTTCTTACTCTTATT+AGG + chr3.1:6630676-6630695 None:intergenic 35.0%
GTTGTAATTGCAGCTGTATT+AGG - chr3.1:6628485-6628504 MS.gene56342:CDS 35.0%
TACATGAGAACAAGAATGGA+TGG - chr3.1:6632815-6632834 MS.gene56342:CDS 35.0%
TACCAACAAACTTGCATTGA+AGG - chr3.1:6630358-6630377 MS.gene56342:intron 35.0%
TATTAACATGTCATCGGAGT+CGG + chr3.1:6630135-6630154 None:intergenic 35.0%
TCTTGTTCTCATGTAAACTG+TGG + chr3.1:6632810-6632829 None:intergenic 35.0%
TGCTTACTGTCGTTCAAAAT+CGG + chr3.1:6632319-6632338 None:intergenic 35.0%
TTATGACATTGGAACAAGGA+TGG + chr3.1:6631551-6631570 None:intergenic 35.0%
TTGATCAGCACTTGTCATTA+GGG + chr3.1:6631832-6631851 None:intergenic 35.0%
! ACATGGTGTTTTCAAAAGGT+TGG - chr3.1:6628733-6628752 MS.gene56342:intron 35.0%
! ACGTTCATCAACTTTTCCAT+AGG + chr3.1:6628384-6628403 None:intergenic 35.0%
! AGCTAGTAAGTTTTCAGTCA+AGG - chr3.1:6632985-6633004 MS.gene56342:CDS 35.0%
! ATTTGACTTCTACAACACGA+AGG + chr3.1:6631396-6631415 None:intergenic 35.0%
! CTTTTCTTCAAGGAGATAGA+TGG - chr3.1:6633008-6633027 MS.gene56342:CDS 35.0%
! GTATATGGTTTGAAACCGTT+TGG + chr3.1:6629052-6629071 None:intergenic 35.0%
! TTAGTATAGATTTTCTCCGG+TGG + chr3.1:6631333-6631352 None:intergenic 35.0%
!! ACTACTATTTCTTTTGGGAG+AGG + chr3.1:6631243-6631262 None:intergenic 35.0%
!! CTACTATTTCTTTTGGGAGA+GGG + chr3.1:6631242-6631261 None:intergenic 35.0%
!! GAACCAAGCAATTTGTTAAG+TGG - chr3.1:6629468-6629487 MS.gene56342:CDS 35.0%
!! GTACTTTAGGTTGAACTCTA+GGG - chr3.1:6629176-6629195 MS.gene56342:intron 35.0%
AACTTGCATTGAAGGCTTTG+AGG - chr3.1:6630366-6630385 MS.gene56342:intron 40.0%
AAGTATACCTTGGAAGACCT+TGG - chr3.1:6632771-6632790 MS.gene56342:CDS 40.0%
AATTCTTCCAAGGTCTTCCA+AGG + chr3.1:6632781-6632800 None:intergenic 40.0%
ACAAATCACTATCACAGCAC+AGG - chr3.1:6632025-6632044 MS.gene56342:intron 40.0%
AGCCTTCAATGCAAGTTTGT+TGG + chr3.1:6630363-6630382 None:intergenic 40.0%
AGGAAAAGATGTTCAACCTG+AGG - chr3.1:6628643-6628662 MS.gene56342:CDS 40.0%
ATCTGGCAAGCTTAATGTTG+TGG - chr3.1:6630798-6630817 MS.gene56342:CDS 40.0%
ATGCCAAAGTTACCTATGCA+TGG - chr3.1:6631999-6632018 MS.gene56342:intron 40.0%
ATGTGTGAATTTGGCATGTG+TGG + chr3.1:6629124-6629143 None:intergenic 40.0%
CAAATCACTATCACAGCACA+GGG - chr3.1:6632026-6632045 MS.gene56342:intron 40.0%
CGTTGTTAATCGTGTTGAGT+TGG - chr3.1:6632613-6632632 MS.gene56342:CDS 40.0%
CTATTCTTTGTTACAGCACC+TGG + chr3.1:6632926-6632945 None:intergenic 40.0%
CTTACTGTCGTTCAAAATCG+GGG + chr3.1:6632317-6632336 None:intergenic 40.0%
CTTGATCAGCACTTGTCATT+AGG + chr3.1:6631833-6631852 None:intergenic 40.0%
GAATCAAACAACGTCAGAGA+CGG - chr3.1:6631182-6631201 MS.gene56342:intron 40.0%
GAATTTCAGAATGTTGGACC+AGG - chr3.1:6632905-6632924 MS.gene56342:CDS 40.0%
GCTTACTGTCGTTCAAAATC+GGG + chr3.1:6632318-6632337 None:intergenic 40.0%
GGTAGATGATAGTAGAACCA+AGG - chr3.1:6628754-6628773 MS.gene56342:intron 40.0%
GGTTAATTGTGTTCATCGGA+TGG + chr3.1:6632296-6632315 None:intergenic 40.0%
GTGGTTGAGTAATTCTTCCA+AGG + chr3.1:6632791-6632810 None:intergenic 40.0%
GTTGTTGCTAAAGATGGTAG+TGG - chr3.1:6630613-6630632 MS.gene56342:CDS 40.0%
TCGGGGTTAATTGTGTTCAT+CGG + chr3.1:6632300-6632319 None:intergenic 40.0%
TGCAAATAGCTGTGTTTGGA+AGG - chr3.1:6631742-6631761 MS.gene56342:intron 40.0%
TGTCCATGCATAGGTAACTT+TGG + chr3.1:6632005-6632024 None:intergenic 40.0%
TTAAAAGGTGAACCTGATGC+AGG + chr3.1:6633037-6633056 None:intergenic 40.0%
TTAGCAATGAGCTAAGCTCA+CGG - chr3.1:6632102-6632121 MS.gene56342:intron 40.0%
TTGTGGTTGATTGTGTTCAG+CGG + chr3.1:6632522-6632541 None:intergenic 40.0%
! ACCGTTTGGCTTAAATCAGT+AGG + chr3.1:6629038-6629057 None:intergenic 40.0%
! ATCCAAATGGTTGGTTACCT+TGG - chr3.1:6632846-6632865 MS.gene56342:CDS 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr3.1:6631148-6631167 MS.gene56342:intron 40.0%
! TCAGTCAAGGCTTTTCTTCA+AGG - chr3.1:6632998-6633017 MS.gene56342:CDS 40.0%
! TCCAAATGGTTGGTTACCTT+GGG - chr3.1:6632847-6632866 MS.gene56342:CDS 40.0%
!! AACAGCCTTAGCTCTATTGT+TGG - chr3.1:6628617-6628636 MS.gene56342:CDS 40.0%
!! GCCTACTGATTTAAGCCAAA+CGG - chr3.1:6629034-6629053 MS.gene56342:intron 40.0%
!! GGTACTTTAGGTTGAACTCT+AGG - chr3.1:6629175-6629194 MS.gene56342:intron 40.0%
!! GTGATTTGTTGTCCATGCAT+AGG + chr3.1:6632014-6632033 None:intergenic 40.0%
!! TATTTCTTTTGGGAGAGGGA+GGG + chr3.1:6631238-6631257 None:intergenic 40.0%
!! TGTTAATCGTGTTGAGTTGG+TGG - chr3.1:6632616-6632635 MS.gene56342:CDS 40.0%
ACCCAAGGTAACCAACCATT+TGG + chr3.1:6632851-6632870 None:intergenic 45.0%
ACTGACCCTAACATGAACAC+AGG - chr3.1:6632053-6632072 MS.gene56342:intron 45.0%
ATCCAGAAACGTATGAGACG+AGG + chr3.1:6631528-6631547 None:intergenic 45.0%
ATGGGATTTCGCAATACAGC+AGG - chr3.1:6631783-6631802 MS.gene56342:intron 45.0%
CACTTAGTGGGATAAGGCTT+AGG + chr3.1:6631149-6631168 None:intergenic 45.0%
CTGAGCCAACAATAGAGCTA+AGG + chr3.1:6628625-6628644 None:intergenic 45.0%
GGCAAGCTTAATGTTGTGGA+TGG - chr3.1:6630802-6630821 MS.gene56342:CDS 45.0%
TAGCAATGAGCTAAGCTCAC+GGG - chr3.1:6632103-6632122 MS.gene56342:intron 45.0%
TCCAGAAACGTATGAGACGA+GGG + chr3.1:6631527-6631546 None:intergenic 45.0%
TTGTCATTAGGGCTACTGCT+TGG + chr3.1:6631821-6631840 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3.1:6631149-6631168 MS.gene56342:intron 45.0%
! AATGGTTGGTTACCTTGGGT+AGG - chr3.1:6632851-6632870 MS.gene56342:CDS 45.0%
! CAAACATGGTTAAGTGCTGC+AGG - chr3.1:6628887-6628906 MS.gene56342:intron 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr3.1:6631147-6631166 MS.gene56342:intron 45.0%
! GATAGATGGATTCCTGCATC+AGG - chr3.1:6633022-6633041 MS.gene56342:CDS 45.0%
!! ATTTCTTTTGGGAGAGGGAG+GGG + chr3.1:6631237-6631256 None:intergenic 45.0%
!! CTATTTCTTTTGGGAGAGGG+AGG + chr3.1:6631239-6631258 None:intergenic 45.0%
!! CTTAGCTCTATTGTTGGCTC+AGG - chr3.1:6628623-6628642 MS.gene56342:CDS 45.0%
AACGTCAGAGACGGATGCAA+GGG - chr3.1:6631191-6631210 MS.gene56342:intron 50.0%
AGCAATGAGCTAAGCTCACG+GGG - chr3.1:6632104-6632123 MS.gene56342:intron 50.0%
CGTCATTAACCACGACTTGC+AGG - chr3.1:6632549-6632568 MS.gene56342:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3.1:6631153-6631172 MS.gene56342:intron 50.0%
GGGGTGCAAATAGCTGTGTT+TGG - chr3.1:6631738-6631757 MS.gene56342:intron 50.0%
ATGCAAGGGAGGGCAAGAGT+AGG - chr3.1:6631205-6631224 MS.gene56342:intron 55.0%
ATGTTGCCGACCCCACTTAG+TGG + chr3.1:6631162-6631181 None:intergenic 55.0%
CAACGTCAGAGACGGATGCA+AGG - chr3.1:6631190-6631209 MS.gene56342:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3.1:6631155-6631174 None:intergenic 55.0%
GCCCTCGTCTCATACGTTTC+TGG - chr3.1:6631523-6631542 MS.gene56342:intron 55.0%
TCAGAGACGGATGCAAGGGA+GGG - chr3.1:6631195-6631214 MS.gene56342:intron 55.0%
TGTTGCCGACCCCACTTAGT+GGG + chr3.1:6631161-6631180 None:intergenic 55.0%
! GGTGCTGAGTTTCCTACCCA+AGG + chr3.1:6632866-6632885 None:intergenic 55.0%
!! GCTACTGCTTGGTGCTTCTG+TGG + chr3.1:6631810-6631829 None:intergenic 55.0%
GTCAGAGACGGATGCAAGGG+AGG - chr3.1:6631194-6631213 MS.gene56342:intron 60.0%
!! CTTTTGGGAGAGGGAGGGGC+TGG + chr3.1:6631233-6631252 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 6628365 6633069 6628365 ID=MS.gene56342
chr3.1 mRNA 6628365 6633069 6628365 ID=MS.gene56342.t1;Parent=MS.gene56342
chr3.1 exon 6632526 6633069 6632526 ID=MS.gene56342.t1.exon1;Parent=MS.gene56342.t1
chr3.1 CDS 6632526 6633069 6632526 ID=cds.MS.gene56342.t1;Parent=MS.gene56342.t1
chr3.1 exon 6630581 6631081 6630581 ID=MS.gene56342.t1.exon2;Parent=MS.gene56342.t1
chr3.1 CDS 6630581 6631081 6630581 ID=cds.MS.gene56342.t1;Parent=MS.gene56342.t1
chr3.1 exon 6629360 6629683 6629360 ID=MS.gene56342.t1.exon3;Parent=MS.gene56342.t1
chr3.1 CDS 6629360 6629683 6629360 ID=cds.MS.gene56342.t1;Parent=MS.gene56342.t1
chr3.1 exon 6628365 6628717 6628365 ID=MS.gene56342.t1.exon4;Parent=MS.gene56342.t1
chr3.1 CDS 6628365 6628717 6628365 ID=cds.MS.gene56342.t1;Parent=MS.gene56342.t1
Gene Sequence

>MS.gene56342

ATGTCTTTCTTCAAATCCTATGGAAAAGTTGATGAACGTGATCAAATGATGTTAGAAGCAAAAAGGAAAACCCGAAAGAGAATCACAATCATAAGCTTATCCTCAATAATCTTTATTGGTGTTGTAATTGCAGCTGTATTAGGAATTGTTAACTCAAAAAATGATGATAACAACAATAATGCATCTCAAAATTCAGTGACCAATTCTATGAAAGCTGTTTGTGATGTTACATTGTACAAAGATTCATGTTATAACAGCCTTAGCTCTATTGTTGGCTCAGGAAAAGATGTTCAACCTGAGGAGTTGTTTAAGTTATCAATCAATGTAGCATTAACTCATGTGTCCAAAGCTATTGAGTATTTCAATGAACATGGTGTTTTCAAAAGGTTGGTAGATGATAGTAGAACCAAGGAAGCTTTGAAAAATTGTAGGGTTCTTTTGGATCTTGCTATTGATCATTTGAATAACTCATTGACTACTTCAAGGGAAAATTCTTCACTTCATCAAGTTTTTGATGATCTTCAAACATGGTTAAGTGCTGCAGGTAATTTGAACAAATAACATATCATTAAAATATTGTTCTTTCTAATATTAATTTGGTTTAAAATGAGTTTTTAGTTCTTTTAATATATTTTTGTTTTGTTTTTTGTCCTTATAGTAGTGATTTAAGCCTACTGATTTAAGCCAAACGGTTTCAAACCATATACTATATATATAGTCAATAACTTGCTTAACATATTTGAGCTATCATTTTGACCACACATGCCAAATTCACACATTTAATTTTCAGCTAATTCATTTTCAAAACTAGGTACTTTAGGTTGAACTCTAGGGTTGTATTTGTATTGATTTATTTGAGTATATCTACTAATATAAGAATTTATATGATTGTTTGTAAGAGCTTATGAAAACCATGTAGTCAAACATGTTTTGAAGTCTAAAGGGAATGAATATGATGCATTTATGTTAACAAAAGAAACCTAAAAATTAATTTACAAAAACGAATTAAACTTTTTTAGGGAAATACTATAAAATATATTGATTATTTATATGTAGTAAAATTTATCATTTTTATAAAAGAAACAGAAAAACAATTATAATATGAACCAAGCAATTTGTTAAGTGGTTAATGAGCTCCAATAAATACCAATTATTCATAAGAACATGAGTTTGATTTTTGGATGGAATAATGTTCTGTCAAAATAATACAGAATAGAGAAAAGACAGACATTATTCTACTTTATTGTATATATGCTTTATTATGTAATGTTTTTTTAGTTTAATTCACCTGTTTGAATTTCATAATTTCTATATGATATGAACTTATCTAAATTTTAGATTTAATATCCATGTTATATGTTTAAAATTTAAATGAAAAATTGAAAGAGAAAAAAAGAGTATGTTATTAAGAACAAATTTACTTTGAAAAATGTTTATTAAAAATTTATAATTATTTTCAAATTATGATGTTATGTGATATATAAAACTTTTTCCATTGAAATTGAATAAATAAAATTATTTAACTAATTGAGCAACGTTGTTTTCTTCATGTGAAAAAAATAAAAAGTTATGAGCACCACGAAACTATTTACAATTAAAAACACATTGCATTTGTTTTTCGTTTTTTCACTTAAAGAAAAAACATACATAAATCATTTCAAATGGAAGTTTAATGGATGTGCACTAGACGTTGTAAATCATAATTTATTTATTTTTTTGAAATAATGTAAATCATCAATTTGTTATGTGATACAACTTATGTTTGGTCCGACTCCGATGACATGTTAATAAAAAAAAAAAAAAACTATTATCATAGTTAGCTCTTTAGTATAGTTTATGAAACAAAATTATTTCTTATATGATTATAGTATGACTCCATTTTATCTTTCGTTGTAGAATTATCTATGATAATCGCTTAATTAAGTTGTGTATCACACTGCTAACAACAACATATATAACTTCATGTTTTGTAAATGCTGAAAAAATAGGTACGTACCAACAAACTTGCATTGAAGGCTTTGAGGATACAAAAGAACAACTTAAGACAAGTGTAACAAGCTACCTTAAAAACTCTACAGAGTACACAAGCAACAGTCTTGCCATAATAACATGGATTAACAAGGCACTAAACACTCTCAATTTAAGGCGTTTAATGAGTTTACCTTATGAAAATGAAACACCAAAATGGCTTCATTCAAAAGATAGGAAACTACTTAGTACAAAGGATTTAAGATCAAAAGCTGATATTGTTGTTGCTAAAGATGGTAGTGGAAAATATAAAACTATATCTGATGCACTTAAACATGTTCCTAATAAGAGTAAGAAGAGGACTTTGATCTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGGGTAGAAAAAACTAAATGGAATGTGATGATTATTGGTGATGGTATGACTTCTTCAATTGTATCTGGCAAGCTTAATGTTGTGGATGGTACACCAACATTTTCAACTGCAACATTTGGTATGTGACTCTATTTGTGTTTAAATATCTTTCTTTTTACTTTTACTTACATTAGAAAAAAAATTAGTTTTAGTACATGAATCATAGGAAAAATTATTTTGGTTCTTGTTTTGGTTTTTATGTATGTTTGGATTGTCTTATTTAAGCTTATCTATTGGCATAAGTGCTTTTGAGACTATTTTAGAGATCATATGAAAACAAACTATGACATGTTTATAAGCTTTTTCAACTTATTTTCATAAGTTTTTCAATATAGCTTACGAAAACAACAACAACAACAAGAAGAACAAGACCTAAGCCTTATCCCACTAAGTGGGGTCGGCAACATGAATCAAACAACGTCAGAGACGGATGCAAGGGAGGGCAAGAGTAGGCTCCAGCCCCTCCCTCTCCCAAAAGAAATAGTAGTAAATTGAATTAAATTTGAATATATTTAACTTTTTTGTTCAATATTTTTTGGTTTTTATAAGTTTCTTCCACCGGAGAAAATCTATACTAAATACAAGTATCTTTTTTGTTGAAATTCGAAGAACTTTGGTCCTTCGTGTTGTAGAAGTCAAATATCCGTTCAATCTTTTGTCTTTTAAGTAACACAGTTGGACGTTTTTATTCTTTTTTTGTTAAATTTTTCGTGTTTGCAAAAATATATTATAAATTAAAATCTTTTTAGCCCTCGTCTCATACGTTTCTGGATCCATCCTTGTTCCAATGTCATAATGTTCTATCAAAAATAGCTCATTGGTTATATGAAAATAGTTTTATTTTATTTTATCTTTTGTCATAGAAATAACTTACAGATAAGCACCTATATGATAAGCGCTTTATTAAGTTCTTTATCCAAACATTAGTAACTTGGGAATCTTTTCATTTTTTTTGTTTTCTTGGGGGTGCAAATAGCTGTGTTTGGAAGGAATTTCATAGCAAGAGACATGGGATTTCGCAATACAGCAGGTCCACAGAAGCACCAAGCAGTAGCCCTAATGACAAGTGCTGATCAAGCAGTTTATTATAAGTGTCACATTGATGCATATCAAGACACTCTTTATGCTCATTCCAATCGACAATTCTATAGAGAATGCAACATTTATGGAACAGTTGATTTCATTTTTGGAAATTCAGCTGTTGTGATTCAGAACTGCAACATTATGCCAAAGTTACCTATGCATGGACAACAAATCACTATCACAGCACAGGGAAAAACTGACCCTAACATGAACACAGGTATTACTAAAACATTATGCATTGTCTTTAGCAATGAGCTAAGCTCACGGGGACAAACATTTCATTTTATTGATAAGAGGAATTATATTTTGACACACATATTTGTCATCAAAATACGATAACAAATTAGATGGTTTACCCAGTTTAAATATGTGGTTAATTATGTTCGGTTAATGATTAATGAATATAACAAGGTCTCGCAAGTCGCAACTTGTTAACCATCCGATGAACACAATTAACCCCGATTTTGAACGACAGTAAGCACGACTTGCAATTATATATTTGAAAACAAAAATGTGGTCAATGGCATTAAAATCGTTGGAAGATTATGTCCTCAAAATACGATAACAAATTATATGGTTTATGCCGTTTAAATATGTGGTCAATTATGTTCGGTGATTAATGAATATAACAAGGTCTTGCAAGTCGCAACTTGTTAATCATCCGCTGAACACAATCAACCACAATTTTGAACGTCATTAACCACGACTTGCAGGTATATATTTGAATACAAAATGTGGTGAATGACATTAAAAATCGTTGTTAATCGTGTTGAGTTGGTGGTTAATGAGCATGACAGTGACACCTTGTTTTATTTATTAACCACCTTGTTTTACTAACTAACTTTTTCTCTTTTAACAGGTATCTCAATTCAATATTGCAACATTTCACCTTATGGAAACTTGAGTGATGTTAAAGTATACCTTGGAAGACCTTGGAAGAATTACTCAACCACAGTTTACATGAGAACAAGAATGGATGGTTTTATTAATCCAAATGGTTGGTTACCTTGGGTAGGAAACTCAGCACCAGATACAATTTTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTGTAACAAAGAATAGAGTGAAGTGGAAGGGTTTGAAAAATATTTCTAGTAAACAAGCTAGTAAGTTTTCAGTCAAGGCTTTTCTTCAAGGAGATAGATGGATTCCTGCATCAGGTTCACCTTTTAAATCTAATATATGA
Protein sequence

>MS.gene56342.t1

MSFFKSYGKVDERDQMMLEAKRKTRKRITIISLSSIIFIGVVIAAVLGIVNSKNDDNNNNASQNSVTNSMKAVCDVTLYKDSCYNSLSSIVGSGKDVQPEELFKLSINVALTHVSKAIEYFNEHGVFKRLVDDSRTKEALKNCRVLLDLAIDHLNNSLTTSRENSSLHQVFDDLQTWLSAAGTYQQTCIEGFEDTKEQLKTSVTSYLKNSTEYTSNSLAIITWINKALNTLNLRRLMSLPYENETPKWLHSKDRKLLSTKDLRSKADIVVAKDGSGKYKTISDALKHVPNKSKKRTLIYVKKGIYYENVRVEKTKWNVMIIGDGMTSSIVSGKLNVVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIMPKLPMHGQQITITAQGKTDPNMNTGISIQYCNISPYGNLSDVKVYLGRPWKNYSTTVYMRTRMDGFINPNGWLPWVGNSAPDTIFYAEFQNVGPGAVTKNRVKWKGLKNISSKQASKFSVKAFLQGDRWIPASGSPFKSNI