Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57095.t1 | XP_013450864.1 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 1.50E-198 | 701.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57095.t1 | Q9LYK6 | 83.1 | 314 | 53 | 0 | 4 | 317 | 2 | 315 | 1.5e-157 | 557.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57095.t1 | A0A072U5A3 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 1.1e-198 | 701.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05491 | MS.gene57095 | 0.806479 | 8.06E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene57095 | MS.gene04593 | PPI |
MS.gene57095 | MS.gene048383 | PPI |
MS.gene57095 | MS.gene072377 | PPI |
MS.gene57095 | MS.gene65922 | PPI |
MS.gene57095 | MS.gene008950 | PPI |
MS.gene57095 | MS.gene017957 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57095.t1 | MTR_6g007797 | 98.824 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 0.0 | 704 |
MS.gene57095.t1 | MTR_8g068320 | 49.363 | 314 | 150 | 5 | 7 | 316 | 14 | 322 | 7.29e-109 | 321 |
MS.gene57095.t1 | MTR_8g068320 | 49.363 | 314 | 150 | 5 | 7 | 316 | 15 | 323 | 8.04e-109 | 321 |
MS.gene57095.t1 | MTR_1g072140 | 21.942 | 278 | 205 | 5 | 32 | 306 | 33 | 301 | 2.18e-16 | 79.0 |
MS.gene57095.t1 | MTR_4g119620 | 21.233 | 292 | 207 | 6 | 29 | 307 | 30 | 311 | 4.03e-14 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57095.t1 | AT5G14530 | 83.121 | 314 | 53 | 0 | 4 | 317 | 2 | 315 | 0.0 | 555 |
MS.gene57095.t1 | AT5G66240 | 49.518 | 311 | 152 | 3 | 7 | 316 | 14 | 320 | 6.71e-105 | 311 |
MS.gene57095.t1 | AT5G66240 | 49.518 | 311 | 152 | 3 | 7 | 316 | 11 | 317 | 1.01e-104 | 310 |
MS.gene57095.t1 | AT5G66240 | 49.196 | 311 | 151 | 4 | 7 | 316 | 11 | 315 | 7.67e-102 | 303 |
MS.gene57095.t1 | AT4G02730 | 21.318 | 258 | 184 | 6 | 25 | 275 | 42 | 287 | 1.20e-13 | 71.2 |
MS.gene57095.t1 | AT5G50230 | 25.091 | 275 | 184 | 10 | 31 | 297 | 230 | 490 | 1.27e-13 | 72.0 |
MS.gene57095.t1 | AT3G49660 | 20.209 | 287 | 212 | 6 | 29 | 307 | 27 | 304 | 6.27e-12 | 66.2 |
Find 93 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCAACTGTTCTCACATTT+TGG | 0.113826 | 6.2:-3684584 | MS.gene57095:CDS |
CCATCGTAAGGATGATTTAT+TGG | 0.221583 | 6.2:-3685399 | MS.gene57095:CDS |
ATGCTCTTCAAGGTACAATT+TGG | 0.267475 | 6.2:-3685249 | MS.gene57095:CDS |
TGGGTCGGTTCACTGGGGTT+GGG | 0.270302 | 6.2:+3684491 | None:intergenic |
GGGTCGGTTCACTGGGGTTG+GGG | 0.328947 | 6.2:+3684492 | None:intergenic |
GTGTGCCTTCATGCTTGAAA+TGG | 0.333505 | 6.2:-3684635 | MS.gene57095:CDS |
TAAGCGCTGCGGATTTAGTT+TGG | 0.334470 | 6.2:-3684796 | MS.gene57095:CDS |
TTGGGTCGGTTCACTGGGGT+TGG | 0.342028 | 6.2:+3684490 | None:intergenic |
TTCAGATTCGGTTCGTTGTT+TGG | 0.346342 | 6.2:+3684558 | None:intergenic |
GCCACTACATACTTCCCGTC+TGG | 0.359890 | 6.2:+3684735 | None:intergenic |
ACCATGTTTCTTATGATAAG+TGG | 0.368405 | 6.2:+3685313 | None:intergenic |
TCGACCACAGTGTAAGGTTA+TGG | 0.369593 | 6.2:-3685094 | MS.gene57095:CDS |
TATTCTTCAGCTTTCAGATT+CGG | 0.379412 | 6.2:+3684546 | None:intergenic |
AGCATGAAGGCACACCAATA+TGG | 0.401017 | 6.2:+3684643 | None:intergenic |
GCATATTGGGTCGGTTCACT+GGG | 0.405903 | 6.2:+3684485 | None:intergenic |
CGGCAAAGACAAGGCCTTGT+TGG | 0.412654 | 6.2:+3685006 | None:intergenic |
CGACCACAGTGTAAGGTTAT+GGG | 0.422202 | 6.2:-3685093 | MS.gene57095:CDS |
ATATATGTTCTTGATGCATA+TGG | 0.423567 | 6.2:-3684825 | MS.gene57095:CDS |
AATCTGAAAGCTGAAGAATA+TGG | 0.427295 | 6.2:-3684543 | MS.gene57095:CDS |
TGTGCCTTCATGCTTGAAAT+GGG | 0.431254 | 6.2:-3684634 | MS.gene57095:CDS |
GCATGTTGGAGCAGCCATAT+TGG | 0.431934 | 6.2:-3684657 | MS.gene57095:CDS |
GATATTAAATTCAGCAATGA+TGG | 0.432124 | 6.2:-3684882 | MS.gene57095:CDS |
TTCGATTGATTTCCATCGTA+AGG | 0.442446 | 6.2:-3685411 | MS.gene57095:CDS |
GTTCTGTCATATGCTCTTCA+AGG | 0.445567 | 6.2:-3685259 | MS.gene57095:CDS |
TAGTGGCAGGCTCAGGAGGC+GGG | 0.458698 | 6.2:-3684719 | MS.gene57095:CDS |
GAAGAGCATATGACAGAACT+TGG | 0.462044 | 6.2:+3685263 | None:intergenic |
GTCTTTGCCGTAGCAATGGA+AGG | 0.466359 | 6.2:-3684993 | MS.gene57095:CDS |
TTGGGGCTGAAGTCCTGCTT+CGG | 0.472052 | 6.2:+3684509 | None:intergenic |
CGCGTACATGTAAGATTCCC+TGG | 0.474657 | 6.2:+3685051 | None:intergenic |
CCGCTGCCTACGATACTTCA+AGG | 0.476986 | 6.2:-3685183 | MS.gene57095:CDS |
GAGGCGGGACCATGCACGCT+TGG | 0.482153 | 6.2:-3684704 | MS.gene57095:CDS |
TCTACGTGTAAATGCATGCC+AGG | 0.490219 | 6.2:-3685069 | MS.gene57095:CDS |
ATCAATGATAGCTTCATGTC+TGG | 0.494202 | 6.2:-3685122 | MS.gene57095:CDS |
GGCGGCACAGACGCCGAAGC+AGG | 0.497543 | 6.2:-3684522 | MS.gene57095:CDS |
GACATGAAGCTATCATTGAT+AGG | 0.501421 | 6.2:+3685125 | None:intergenic |
ATCTCATGGTACCTCAATAG+AGG | 0.509631 | 6.2:-3684769 | MS.gene57095:CDS |
GACAAGGCCTTGTTGGTCAT+AGG | 0.519019 | 6.2:+3685013 | None:intergenic |
CCACTACATACTTCCCGTCT+GGG | 0.519962 | 6.2:+3684736 | None:intergenic |
GTTCTGTCGACCACAGTGTA+AGG | 0.522105 | 6.2:-3685100 | MS.gene57095:CDS |
GACGGGAAGTATGTAGTGGC+AGG | 0.522246 | 6.2:-3684732 | MS.gene57095:CDS |
GATGATTTATTGGTCACAGC+TGG | 0.522307 | 6.2:-3685389 | MS.gene57095:CDS |
AGTTGAGGCTGCAGCAAACA+TGG | 0.526145 | 6.2:+3684599 | None:intergenic |
GTAGTGGCAGGCTCAGGAGG+CGG | 0.527933 | 6.2:-3684720 | MS.gene57095:CDS |
AGGTACAATTTGGAGTCTAC+CGG | 0.528433 | 6.2:-3685239 | MS.gene57095:CDS |
AAGTATGTAGTGGCAGGCTC+AGG | 0.532223 | 6.2:-3684726 | MS.gene57095:CDS |
CCTTGTCTTTGCCGTAGCAA+TGG | 0.536478 | 6.2:-3684997 | MS.gene57095:CDS |
GAGGATGACAGCATCACTTA+CGG | 0.538066 | 6.2:-3685504 | None:intergenic |
AGGCTGCAGCAAACATGGCT+CGG | 0.538980 | 6.2:+3684604 | None:intergenic |
TAAATACCTCAACGATTCTC+CGG | 0.546938 | 6.2:+3685220 | None:intergenic |
TGCACGCTTGGAGTATTGAC+AGG | 0.554704 | 6.2:-3684692 | MS.gene57095:CDS |
CGCTGCCTACGATACTTCAA+GGG | 0.558491 | 6.2:-3685182 | MS.gene57095:CDS |
GAGGCTACATTTACCCCAGA+CGG | 0.561514 | 6.2:-3684750 | MS.gene57095:CDS |
TTTAGTTTGGAACCATCTCA+TGG | 0.564025 | 6.2:-3684783 | MS.gene57095:CDS |
ATTGTCCGCACCATGTCCAT+AGG | 0.567688 | 6.2:-3685467 | MS.gene57095:CDS |
TCTTTGCCGTAGCAATGGAA+GGG | 0.575146 | 6.2:-3684992 | MS.gene57095:CDS |
TATGTAGTGGCAGGCTCAGG+AGG | 0.576632 | 6.2:-3684723 | MS.gene57095:CDS |
CTTTGCCGTAGCAATGGAAG+GGG | 0.578605 | 6.2:-3684991 | MS.gene57095:CDS |
GTCAATACTCCAAGCGTGCA+TGG | 0.585442 | 6.2:+3684695 | None:intergenic |
ACCGACAAGAAAAGTGTCGA+AGG | 0.593960 | 6.2:+3684926 | None:intergenic |
GCAGCAAACATGGCTCGGCG+AGG | 0.601478 | 6.2:+3684609 | None:intergenic |
CCAAAATGTGAGAACAGTTG+AGG | 0.608499 | 6.2:+3684584 | None:intergenic |
ATATATCTTCCCAACATAGT+CGG | 0.608921 | 6.2:+3685433 | None:intergenic |
GGTAAATGTAGCCTCTATTG+AGG | 0.612541 | 6.2:+3684758 | None:intergenic |
GATTCACGTTCGTATGACAA+AGG | 0.613913 | 6.2:-3684951 | MS.gene57095:CDS |
TATGCCCCTTGAAGTATCGT+AGG | 0.614852 | 6.2:+3685177 | None:intergenic |
TCTATTGAGGTACCATGAGA+TGG | 0.615901 | 6.2:+3684771 | None:intergenic |
CCAATAAATCATCCTTACGA+TGG | 0.616705 | 6.2:+3685399 | None:intergenic |
TGTCGGTGGTGATACTGCTG+AGG | 0.617340 | 6.2:-3684910 | MS.gene57095:CDS |
GGAGCCCATTTCAAGCATGA+AGG | 0.618503 | 6.2:+3684630 | None:intergenic |
AGGCTACATTTACCCCAGAC+GGG | 0.619588 | 6.2:-3684749 | MS.gene57095:CDS |
TGTTGGTCATAGGCAACAGT+AGG | 0.620319 | 6.2:+3685023 | None:intergenic |
GGAATTACGAGGTAGCATGT+TGG | 0.622795 | 6.2:-3684671 | MS.gene57095:CDS |
CCATTGCTACGGCAAAGACA+AGG | 0.633354 | 6.2:+3684997 | None:intergenic |
CCTTGAAGTATCGTAGGCAG+CGG | 0.633936 | 6.2:+3685183 | None:intergenic |
CGGCTCCTATGGACATGGTG+CGG | 0.635826 | 6.2:+3685462 | None:intergenic |
CCCAGACGGGAAGTATGTAG+TGG | 0.649182 | 6.2:-3684736 | MS.gene57095:CDS |
TATGTTCTTGATGCATATGG+AGG | 0.651997 | 6.2:-3684822 | MS.gene57095:CDS |
AAGAGCATATGACAGAACTT+GGG | 0.654133 | 6.2:+3685264 | None:intergenic |
ACCACTTATCATAAGAAACA+TGG | 0.669454 | 6.2:-3685314 | MS.gene57095:CDS |
CTACGTGTAAATGCATGCCA+GGG | 0.671133 | 6.2:-3685068 | MS.gene57095:CDS |
CCGACAAGAAAAGTGTCGAA+GGG | 0.674207 | 6.2:+3684927 | None:intergenic |
CACTACATACTTCCCGTCTG+GGG | 0.675821 | 6.2:+3684737 | None:intergenic |
CAGGGAATCTTACATGTACG+CGG | 0.690267 | 6.2:-3685050 | MS.gene57095:CDS |
AGTCTACCGGAGAATCGTTG+AGG | 0.691573 | 6.2:-3685226 | MS.gene57095:CDS |
GAGTATTGACAGGAATTACG+AGG | 0.691671 | 6.2:-3684682 | MS.gene57095:CDS |
TTTGCCGTAGCAATGGAAGG+GGG | 0.702301 | 6.2:-3684990 | MS.gene57095:CDS |
CTGAAAGCTGAAGAATATGG+CGG | 0.702890 | 6.2:-3684540 | MS.gene57095:CDS |
CATATTGGGTCGGTTCACTG+GGG | 0.704543 | 6.2:+3684486 | None:intergenic |
GCTGCCTACGATACTTCAAG+GGG | 0.709960 | 6.2:-3685181 | MS.gene57095:CDS |
TTTATTGGTCACAGCTGGTG+AGG | 0.710015 | 6.2:-3685384 | MS.gene57095:CDS |
ACTGTTGCCTATGACCAACA+AGG | 0.730445 | 6.2:-3685020 | MS.gene57095:CDS |
TATGGAGGAGATAAGCGCTG+CGG | 0.743293 | 6.2:-3684807 | MS.gene57095:CDS |
GATCCCATAACCTTACACTG+TGG | 0.791126 | 6.2:+3685090 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATATATGTTCTTGATGCATA+TGG | - | chr6.2:3685175-3685194 | MS.gene57095:CDS | 25.0% |
! | GATATTAAATTCAGCAATGA+TGG | - | chr6.2:3685118-3685137 | MS.gene57095:CDS | 25.0% |
AATCTGAAAGCTGAAGAATA+TGG | - | chr6.2:3685457-3685476 | MS.gene57095:CDS | 30.0% | |
ACCACTTATCATAAGAAACA+TGG | - | chr6.2:3684686-3684705 | MS.gene57095:CDS | 30.0% | |
ACCATGTTTCTTATGATAAG+TGG | + | chr6.2:3684690-3684709 | None:intergenic | 30.0% | |
ATATATCTTCCCAACATAGT+CGG | + | chr6.2:3684570-3684589 | None:intergenic | 30.0% | |
TATTCTTCAGCTTTCAGATT+CGG | + | chr6.2:3685457-3685476 | None:intergenic | 30.0% | |
ATCAATGATAGCTTCATGTC+TGG | - | chr6.2:3684878-3684897 | MS.gene57095:CDS | 35.0% | |
ATGCTCTTCAAGGTACAATT+TGG | - | chr6.2:3684751-3684770 | MS.gene57095:CDS | 35.0% | |
CCAATAAATCATCCTTACGA+TGG | + | chr6.2:3684604-3684623 | None:intergenic | 35.0% | |
CCATCGTAAGGATGATTTAT+TGG | - | chr6.2:3684601-3684620 | MS.gene57095:CDS | 35.0% | |
GACATGAAGCTATCATTGAT+AGG | + | chr6.2:3684878-3684897 | None:intergenic | 35.0% | |
TAAATACCTCAACGATTCTC+CGG | + | chr6.2:3684783-3684802 | None:intergenic | 35.0% | |
TATGTTCTTGATGCATATGG+AGG | - | chr6.2:3685178-3685197 | MS.gene57095:CDS | 35.0% | |
! | AAGAGCATATGACAGAACTT+GGG | + | chr6.2:3684739-3684758 | None:intergenic | 35.0% |
! | TTCGATTGATTTCCATCGTA+AGG | - | chr6.2:3684589-3684608 | MS.gene57095:CDS | 35.0% |
!! | TTTAGTTTGGAACCATCTCA+TGG | - | chr6.2:3685217-3685236 | MS.gene57095:CDS | 35.0% |
ATCTCATGGTACCTCAATAG+AGG | - | chr6.2:3685231-3685250 | MS.gene57095:CDS | 40.0% | |
CCAAAATGTGAGAACAGTTG+AGG | + | chr6.2:3685419-3685438 | None:intergenic | 40.0% | |
CCCAACATAGTCGGAAAAAA+CGG | + | chr6.2:3684561-3684580 | None:intergenic | 40.0% | |
CTGAAAGCTGAAGAATATGG+CGG | - | chr6.2:3685460-3685479 | MS.gene57095:CDS | 40.0% | |
GATGATTTATTGGTCACAGC+TGG | - | chr6.2:3684611-3684630 | MS.gene57095:CDS | 40.0% | |
GATTCACGTTCGTATGACAA+AGG | - | chr6.2:3685049-3685068 | MS.gene57095:CDS | 40.0% | |
GGTAAATGTAGCCTCTATTG+AGG | + | chr6.2:3685245-3685264 | None:intergenic | 40.0% | |
GTTCTGTCATATGCTCTTCA+AGG | - | chr6.2:3684741-3684760 | MS.gene57095:CDS | 40.0% | |
TGTGCCTTCATGCTTGAAAT+GGG | - | chr6.2:3685366-3685385 | MS.gene57095:CDS | 40.0% | |
! | AGGTACAATTTGGAGTCTAC+CGG | - | chr6.2:3684761-3684780 | MS.gene57095:CDS | 40.0% |
! | CCTCAACTGTTCTCACATTT+TGG | - | chr6.2:3685416-3685435 | MS.gene57095:CDS | 40.0% |
! | GAAGAGCATATGACAGAACT+TGG | + | chr6.2:3684740-3684759 | None:intergenic | 40.0% |
! | TCTATTGAGGTACCATGAGA+TGG | + | chr6.2:3685232-3685251 | None:intergenic | 40.0% |
! | TTCAGATTCGGTTCGTTGTT+TGG | + | chr6.2:3685445-3685464 | None:intergenic | 40.0% |
!! | GAGTATTGACAGGAATTACG+AGG | - | chr6.2:3685318-3685337 | MS.gene57095:CDS | 40.0% |
!!! | CCGTTTTTTCCGACTATGTT+GGG | - | chr6.2:3684558-3684577 | MS.gene57095:CDS | 40.0% |
AAAAACGGCTCCTATGGACA+TGG | + | chr6.2:3684546-3684565 | None:intergenic | 45.0% | |
ACTGTTGCCTATGACCAACA+AGG | - | chr6.2:3684980-3684999 | MS.gene57095:CDS | 45.0% | |
CAGGGAATCTTACATGTACG+CGG | - | chr6.2:3684950-3684969 | MS.gene57095:CDS | 45.0% | |
CGACCACAGTGTAAGGTTAT+GGG | - | chr6.2:3684907-3684926 | MS.gene57095:CDS | 45.0% | |
CTACGTGTAAATGCATGCCA+GGG | - | chr6.2:3684932-3684951 | MS.gene57095:CDS | 45.0% | |
GATCCCATAACCTTACACTG+TGG | + | chr6.2:3684913-3684932 | None:intergenic | 45.0% | |
GGAATTACGAGGTAGCATGT+TGG | - | chr6.2:3685329-3685348 | MS.gene57095:CDS | 45.0% | |
GTGTGCCTTCATGCTTGAAA+TGG | - | chr6.2:3685365-3685384 | MS.gene57095:CDS | 45.0% | |
TCGACCACAGTGTAAGGTTA+TGG | - | chr6.2:3684906-3684925 | MS.gene57095:CDS | 45.0% | |
TCTACGTGTAAATGCATGCC+AGG | - | chr6.2:3684931-3684950 | MS.gene57095:CDS | 45.0% | |
TCTTTGCCGTAGCAATGGAA+GGG | - | chr6.2:3685008-3685027 | MS.gene57095:CDS | 45.0% | |
TGTTGGTCATAGGCAACAGT+AGG | + | chr6.2:3684980-3684999 | None:intergenic | 45.0% | |
TTTATTGGTCACAGCTGGTG+AGG | - | chr6.2:3684616-3684635 | MS.gene57095:CDS | 45.0% | |
! | AGCATGAAGGCACACCAATA+TGG | + | chr6.2:3685360-3685379 | None:intergenic | 45.0% |
! | CCCTTCGACACTTTTCTTGT+CGG | - | chr6.2:3685073-3685092 | MS.gene57095:CDS | 45.0% |
! | TAAGCGCTGCGGATTTAGTT+TGG | - | chr6.2:3685204-3685223 | MS.gene57095:CDS | 45.0% |
! | TTCGACACTTTTCTTGTCGG+TGG | - | chr6.2:3685076-3685095 | MS.gene57095:CDS | 45.0% |
!! | ACCGACAAGAAAAGTGTCGA+AGG | + | chr6.2:3685077-3685096 | None:intergenic | 45.0% |
!! | CCGACAAGAAAAGTGTCGAA+GGG | + | chr6.2:3685076-3685095 | None:intergenic | 45.0% |
!! | TATGCCCCTTGAAGTATCGT+AGG | + | chr6.2:3684826-3684845 | None:intergenic | 45.0% |
!!! | GCCGTTTTTTCCGACTATGT+TGG | - | chr6.2:3684557-3684576 | MS.gene57095:CDS | 45.0% |
AAGTATGTAGTGGCAGGCTC+AGG | - | chr6.2:3685274-3685293 | MS.gene57095:CDS | 50.0% | |
AGGCTACATTTACCCCAGAC+GGG | - | chr6.2:3685251-3685270 | MS.gene57095:CDS | 50.0% | |
AGTCTACCGGAGAATCGTTG+AGG | - | chr6.2:3684774-3684793 | MS.gene57095:CDS | 50.0% | |
AGTTGAGGCTGCAGCAAACA+TGG | + | chr6.2:3685404-3685423 | None:intergenic | 50.0% | |
ATTGTCCGCACCATGTCCAT+AGG | - | chr6.2:3684533-3684552 | MS.gene57095:CDS | 50.0% | |
CACTACATACTTCCCGTCTG+GGG | + | chr6.2:3685266-3685285 | None:intergenic | 50.0% | |
CCACTACATACTTCCCGTCT+GGG | + | chr6.2:3685267-3685286 | None:intergenic | 50.0% | |
CCATTGCTACGGCAAAGACA+AGG | + | chr6.2:3685006-3685025 | None:intergenic | 50.0% | |
CCTTGTCTTTGCCGTAGCAA+TGG | - | chr6.2:3685003-3685022 | MS.gene57095:CDS | 50.0% | |
CGCGTACATGTAAGATTCCC+TGG | + | chr6.2:3684952-3684971 | None:intergenic | 50.0% | |
CGCTGCCTACGATACTTCAA+GGG | - | chr6.2:3684818-3684837 | MS.gene57095:CDS | 50.0% | |
CTTTGCCGTAGCAATGGAAG+GGG | - | chr6.2:3685009-3685028 | MS.gene57095:CDS | 50.0% | |
GAGGCTACATTTACCCCAGA+CGG | - | chr6.2:3685250-3685269 | MS.gene57095:CDS | 50.0% | |
GCATGTTGGAGCAGCCATAT+TGG | - | chr6.2:3685343-3685362 | MS.gene57095:CDS | 50.0% | |
GCTGCCTACGATACTTCAAG+GGG | - | chr6.2:3684819-3684838 | MS.gene57095:CDS | 50.0% | |
GGAGCCCATTTCAAGCATGA+AGG | + | chr6.2:3685373-3685392 | None:intergenic | 50.0% | |
GTCAATACTCCAAGCGTGCA+TGG | + | chr6.2:3685308-3685327 | None:intergenic | 50.0% | |
GTCGGAAAAAACGGCTCCTA+TGG | + | chr6.2:3684552-3684571 | None:intergenic | 50.0% | |
GTCTTTGCCGTAGCAATGGA+AGG | - | chr6.2:3685007-3685026 | MS.gene57095:CDS | 50.0% | |
GTTCTGTCGACCACAGTGTA+AGG | - | chr6.2:3684900-3684919 | MS.gene57095:CDS | 50.0% | |
TTTGCCGTAGCAATGGAAGG+GGG | - | chr6.2:3685010-3685029 | MS.gene57095:CDS | 50.0% | |
! | TATGGAGGAGATAAGCGCTG+CGG | - | chr6.2:3685193-3685212 | MS.gene57095:CDS | 50.0% |
!! | CCTTGAAGTATCGTAGGCAG+CGG | + | chr6.2:3684820-3684839 | None:intergenic | 50.0% |
!! | GACAAGGCCTTGTTGGTCAT+AGG | + | chr6.2:3684990-3685009 | None:intergenic | 50.0% |
!! | TGCACGCTTGGAGTATTGAC+AGG | - | chr6.2:3685308-3685327 | MS.gene57095:CDS | 50.0% |
AGCTCCCCCTTCCATTGCTA+CGG | + | chr6.2:3685017-3685036 | None:intergenic | 55.0% | |
AGGCTGCAGCAAACATGGCT+CGG | + | chr6.2:3685399-3685418 | None:intergenic | 55.0% | |
CCGCTGCCTACGATACTTCA+AGG | - | chr6.2:3684817-3684836 | MS.gene57095:CDS | 55.0% | |
GCCACTACATACTTCCCGTC+TGG | + | chr6.2:3685268-3685287 | None:intergenic | 55.0% | |
TATGTAGTGGCAGGCTCAGG+AGG | - | chr6.2:3685277-3685296 | MS.gene57095:CDS | 55.0% | |
TGTCGGTGGTGATACTGCTG+AGG | - | chr6.2:3685090-3685109 | MS.gene57095:CDS | 55.0% | |
TTGGGGCTGAAGTCCTGCTT+CGG | + | chr6.2:3685494-3685513 | None:intergenic | 55.0% | |
! | CCCAGACGGGAAGTATGTAG+TGG | - | chr6.2:3685264-3685283 | MS.gene57095:CDS | 55.0% |
! | CGGCAAAGACAAGGCCTTGT+TGG | + | chr6.2:3684997-3685016 | None:intergenic | 55.0% |
! | GACGGGAAGTATGTAGTGGC+AGG | - | chr6.2:3685268-3685287 | MS.gene57095:CDS | 55.0% |
CGGCTCCTATGGACATGGTG+CGG | + | chr6.2:3684541-3684560 | None:intergenic | 60.0% | |
GTAGTGGCAGGCTCAGGAGG+CGG | - | chr6.2:3685280-3685299 | MS.gene57095:CDS | 65.0% | |
TAGTGGCAGGCTCAGGAGGC+GGG | - | chr6.2:3685281-3685300 | MS.gene57095:CDS | 65.0% | |
! | GCAGCAAACATGGCTCGGCG+AGG | + | chr6.2:3685394-3685413 | None:intergenic | 65.0% |
GAGGCGGGACCATGCACGCT+TGG | - | chr6.2:3685296-3685315 | MS.gene57095:CDS | 70.0% | |
GGCGGCACAGACGCCGAAGC+AGG | - | chr6.2:3685478-3685497 | MS.gene57095:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 3684500 | 3685522 | 3684500 | ID=MS.gene57095 |
chr6.2 | mRNA | 3684500 | 3685522 | 3684500 | ID=MS.gene57095.t1;Parent=MS.gene57095 |
chr6.2 | exon | 3684500 | 3685522 | 3684500 | ID=MS.gene57095.t1.exon1;Parent=MS.gene57095.t1 |
chr6.2 | CDS | 3684500 | 3685522 | 3684500 | ID=cds.MS.gene57095.t1;Parent=MS.gene57095.t1 |
Gene Sequence |
Protein sequence |