Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57544.t1 | XP_003627626.1 | 98.6 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 6.50E-77 | 296.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57544.t1 | Q9C8S6 | 57.4 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 9.9e-42 | 171.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57544.t1 | G7LCN5 | 98.6 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 4.7e-77 | 296.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057768 | MS.gene57544 | 0.811801 | 5.84E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene57544 | 0.804496 | 2.10E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene57544 | 0.804438 | 2.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57544.t1 | MTR_8g032300 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 2.48e-107 | 302 |
| MS.gene57544.t1 | MTR_8g032320 | 82.432 | 148 | 26 | 0 | 1 | 148 | 1 | 148 | 2.91e-92 | 264 |
| MS.gene57544.t1 | MTR_1g008950 | 64.800 | 125 | 44 | 0 | 1 | 125 | 1 | 125 | 6.53e-58 | 176 |
| MS.gene57544.t1 | MTR_5g079880 | 40.645 | 155 | 77 | 5 | 1 | 144 | 1 | 151 | 4.49e-35 | 119 |
| MS.gene57544.t1 | MTR_5g079890 | 39.241 | 158 | 80 | 5 | 1 | 145 | 1 | 155 | 1.00e-31 | 111 |
| MS.gene57544.t1 | MTR_5g079890 | 39.130 | 138 | 71 | 4 | 1 | 125 | 1 | 138 | 2.11e-28 | 102 |
| MS.gene57544.t1 | MTR_7g075960 | 60.377 | 53 | 21 | 0 | 25 | 77 | 1 | 53 | 8.49e-21 | 80.5 |
| MS.gene57544.t1 | MTR_8g030870 | 28.571 | 147 | 93 | 2 | 1 | 135 | 1 | 147 | 1.83e-16 | 72.8 |
| MS.gene57544.t1 | MTR_3g106660 | 32.283 | 127 | 82 | 2 | 3 | 128 | 439 | 562 | 1.35e-13 | 67.0 |
| MS.gene57544.t1 | MTR_3g106660 | 31.061 | 132 | 81 | 4 | 2 | 124 | 255 | 385 | 1.52e-11 | 61.2 |
| MS.gene57544.t1 | MTR_5g004800 | 27.119 | 118 | 84 | 2 | 6 | 122 | 15 | 131 | 2.67e-12 | 62.4 |
| MS.gene57544.t1 | MTR_4g115660 | 33.588 | 131 | 81 | 4 | 3 | 131 | 440 | 566 | 3.44e-12 | 63.2 |
| MS.gene57544.t1 | MTR_2g027100 | 37.363 | 91 | 55 | 2 | 4 | 94 | 6 | 94 | 4.44e-12 | 60.5 |
| MS.gene57544.t1 | MTR_5g004870 | 29.412 | 119 | 82 | 2 | 6 | 123 | 11 | 128 | 4.49e-12 | 62.4 |
| MS.gene57544.t1 | MTR_2g030230 | 37.363 | 91 | 55 | 2 | 4 | 94 | 173 | 261 | 2.85e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57544.t1 | AT1G63220 | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 1.56e-55 | 171 |
| MS.gene57544.t1 | AT1G63220 | 52.027 | 148 | 56 | 2 | 1 | 148 | 1 | 133 | 2.18e-45 | 145 |
| MS.gene57544.t1 | AT3G55470 | 34.177 | 158 | 90 | 5 | 1 | 147 | 1 | 155 | 1.39e-23 | 90.5 |
| MS.gene57544.t1 | AT3G55470 | 34.591 | 159 | 89 | 6 | 1 | 147 | 1 | 156 | 1.26e-22 | 87.8 |
| MS.gene57544.t1 | AT4G00467 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 6.21e-15 | 68.6 |
| MS.gene57544.t1 | AT4G00467 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 9.52e-15 | 68.6 |
| MS.gene57544.t1 | AT5G47710 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.50e-14 | 66.2 |
| MS.gene57544.t1 | AT5G47710 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.50e-14 | 66.2 |
| MS.gene57544.t1 | AT5G47710 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.50e-14 | 66.2 |
| MS.gene57544.t1 | AT5G47710 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.50e-14 | 66.2 |
| MS.gene57544.t1 | AT5G04220 | 31.646 | 158 | 93 | 5 | 2 | 147 | 37 | 191 | 9.85e-13 | 64.3 |
| MS.gene57544.t1 | AT5G04220 | 31.646 | 158 | 93 | 5 | 2 | 147 | 197 | 351 | 2.03e-12 | 63.9 |
| MS.gene57544.t1 | AT5G04220 | 31.646 | 158 | 93 | 5 | 2 | 147 | 259 | 413 | 3.18e-12 | 63.2 |
| MS.gene57544.t1 | AT4G34150 | 27.966 | 118 | 83 | 2 | 6 | 122 | 12 | 128 | 4.78e-12 | 62.0 |
| MS.gene57544.t1 | AT4G21160 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 9.73e-11 | 58.9 |
| MS.gene57544.t1 | AT4G21160 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 9.73e-11 | 58.9 |
| MS.gene57544.t1 | AT4G21160 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 9.73e-11 | 58.9 |
| MS.gene57544.t1 | AT4G21160 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 9.73e-11 | 58.9 |
Find 31 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTTGTAAGAATTCTC+TGG | 0.370783 | 8.3:-62266523 | None:intergenic |
| AGAGAAAATCATTGTCTTCA+AGG | 0.372599 | 8.3:-62264686 | None:intergenic |
| AAAATATTGTGGAGAGGTTA+AGG | 0.388006 | 8.3:+62266555 | MS.gene57544:CDS |
| TGAGCTCAATCTAAAGATAA+TGG | 0.401742 | 8.3:+62266125 | MS.gene57544:CDS |
| TATAGTGCTGATGATAATCT+TGG | 0.411031 | 8.3:+62266159 | MS.gene57544:CDS |
| CTTATGTGATCCTCACATAC+AGG | 0.472608 | 8.3:+62265406 | MS.gene57544:CDS |
| GAAATGTCTCATTCCATTGA+GGG | 0.473516 | 8.3:-62266077 | None:intergenic |
| CAATCTAAAGATAATGGAAA+AGG | 0.492449 | 8.3:+62266131 | MS.gene57544:CDS |
| TCTTGAATCACTGTCTCTAA+AGG | 0.495815 | 8.3:-62266490 | None:intergenic |
| GTGCTGGATCCAACCCTCAA+TGG | 0.516268 | 8.3:+62266064 | MS.gene57544:CDS |
| AGAAATGTCTCATTCCATTG+AGG | 0.522164 | 8.3:-62266078 | None:intergenic |
| TGTCTCATTCCATTGAGGGT+TGG | 0.547968 | 8.3:-62266073 | None:intergenic |
| CTGTATGTGAGGATCACATA+AGG | 0.549620 | 8.3:-62265405 | None:intergenic |
| GTGGATGGAAACAATCGGCT+AGG | 0.550623 | 8.3:+62266728 | MS.gene57544:CDS |
| GACTGGTGGATGGAAACAAT+CGG | 0.565129 | 8.3:+62266723 | MS.gene57544:CDS |
| AAGAAGAGGAGACTGGTGGA+TGG | 0.575646 | 8.3:+62266713 | MS.gene57544:CDS |
| TACAATCAAGAAGAGGAGAC+TGG | 0.590424 | 8.3:+62266706 | MS.gene57544:CDS |
| GAATTCTTACAAACTTGTGA+AGG | 0.595780 | 8.3:+62266528 | MS.gene57544:CDS |
| GCTCCTGTGCCCTGTATGTG+AGG | 0.595785 | 8.3:-62265416 | None:intergenic |
| CACAAGAGTACTGTGCAAGA+AGG | 0.601180 | 8.3:+62265438 | MS.gene57544:CDS |
| TGGATGGAAACAATCGGCTA+GGG | 0.602214 | 8.3:+62266729 | MS.gene57544:CDS |
| TTATGTGATCCTCACATACA+GGG | 0.628264 | 8.3:+62265407 | MS.gene57544:CDS |
| TTTAGAGACAGTGATTCAAG+AGG | 0.636421 | 8.3:+62266492 | MS.gene57544:CDS |
| TTAGAGACAGTGATTCAAGA+GGG | 0.640617 | 8.3:+62266493 | MS.gene57544:CDS |
| ACGGAGTTACAATCAAGAAG+AGG | 0.650435 | 8.3:+62266699 | MS.gene57544:CDS |
| GATCCTCACATACAGGGCAC+AGG | 0.652687 | 8.3:+62265413 | MS.gene57544:CDS |
| AATCAAGAAGAGGAGACTGG+TGG | 0.655585 | 8.3:+62266709 | MS.gene57544:CDS |
| GGTTGCAGAGAAACTATGAA+CGG | 0.677708 | 8.3:+62266680 | MS.gene57544:intron |
| AATCAGAGAAAGATGCCTCG+TGG | 0.689332 | 8.3:+62264630 | None:intergenic |
| ATATTGTGGAGAGGTTAAGG+TGG | 0.690996 | 8.3:+62266558 | MS.gene57544:CDS |
| ACAACTTCAAGCGTTCCACG+AGG | 0.769497 | 8.3:-62264645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATTATTATATGAATTT+AGG | - | chr8.3:62265300-62265319 | None:intergenic | 10.0% |
| !! | AATCATAAATTAATAATTCA+TGG | - | chr8.3:62265863-62265882 | None:intergenic | 10.0% |
| !!! | ATCAATTTTAATAATCAAAT+TGG | - | chr8.3:62265328-62265347 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr8.3:62265916-62265935 | None:intergenic | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr8.3:62265868-62265887 | MS.gene57544:intron | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr8.3:62265867-62265886 | MS.gene57544:intron | 10.0% |
| !! | AAACTCTTTGAATTAATATT+CGG | - | chr8.3:62266020-62266039 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr8.3:62265944-62265963 | MS.gene57544:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr8.3:62265982-62266001 | None:intergenic | 15.0% |
| !! | ACTGTATTATGAATAATATC+AGG | + | chr8.3:62266042-62266061 | MS.gene57544:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr8.3:62265556-62265575 | MS.gene57544:intron | 20.0% |
| !! | TAAATTAATAATGTCAGGAT+CGG | + | chr8.3:62265561-62265580 | MS.gene57544:intron | 20.0% |
| !! | TATGATAAAACTGAAGTAAT+TGG | - | chr8.3:62265128-62265147 | None:intergenic | 20.0% |
| !!! | AATGTTGTAATTTGTAATGT+TGG | + | chr8.3:62266444-62266463 | MS.gene57544:intron | 20.0% |
| !!! | AGAAAATTTTCATCTTAAGT+TGG | + | chr8.3:62264802-62264821 | MS.gene57544:intron | 20.0% |
| !!! | ATAAAAGTATGAAGAAAAAC+AGG | - | chr8.3:62266621-62266640 | None:intergenic | 20.0% |
| !!! | ATTGTGCTATTATATGATTA+TGG | - | chr8.3:62264946-62264965 | None:intergenic | 20.0% |
| ! | AAATAAACACAGTAACAAGA+CGG | - | chr8.3:62265017-62265036 | None:intergenic | 25.0% |
| ! | GGAACAACAAATATATAGAT+CGG | - | chr8.3:62264829-62264848 | None:intergenic | 25.0% |
| ! | GTACAATAAATGTAAACAAG+AGG | + | chr8.3:62265794-62265813 | MS.gene57544:intron | 25.0% |
| ! | TAACTGAAAAAGTTGAATGT+TGG | + | chr8.3:62266351-62266370 | MS.gene57544:intron | 25.0% |
| ! | TTGAATTAGTGAATCAATTC+AGG | + | chr8.3:62264885-62264904 | MS.gene57544:intron | 25.0% |
| !! | AACTAGTTTACACTTAAAAG+AGG | + | chr8.3:62266417-62266436 | MS.gene57544:intron | 25.0% |
| !! | ATCACAAGATTTCATACTTT+TGG | - | chr8.3:62264769-62264788 | None:intergenic | 25.0% |
| !! | GATTGTATTTTGTACTCTAT+CGG | + | chr8.3:62265237-62265256 | MS.gene57544:intron | 25.0% |
| !! | TAAAATGCACTATCGATTAT+TGG | + | chr8.3:62266659-62266678 | MS.gene57544:intron | 25.0% |
| !!! | CAATCTAAAGATAATGGAAA+AGG | + | chr8.3:62266131-62266150 | MS.gene57544:CDS | 25.0% |
| AAAATATTGTGGAGAGGTTA+AGG | + | chr8.3:62266555-62266574 | MS.gene57544:CDS | 30.0% | |
| AACAAAGATCAAGACTTTAG+AGG | - | chr8.3:62265362-62265381 | None:intergenic | 30.0% | |
| ACAAGTTTGTAAGAATTCTC+TGG | - | chr8.3:62266526-62266545 | None:intergenic | 30.0% | |
| ACTGTACATACCAAACAAAA+AGG | + | chr8.3:62265663-62265682 | MS.gene57544:intron | 30.0% | |
| AGACTCAATTAACAAGCTTT+AGG | - | chr8.3:62264850-62264869 | None:intergenic | 30.0% | |
| AGAGAAAATCATTGTCTTCA+AGG | - | chr8.3:62264689-62264708 | None:intergenic | 30.0% | |
| CAAGAGTTCTTATTGAGTAT+CGG | - | chr8.3:62266291-62266310 | None:intergenic | 30.0% | |
| GAAATTTCTGCATCAATCAA+TGG | + | chr8.3:62264741-62264760 | MS.gene57544:intron | 30.0% | |
| GAATTCTTACAAACTTGTGA+AGG | + | chr8.3:62266528-62266547 | MS.gene57544:CDS | 30.0% | |
| GTGAAGGATGAAAAATATTG+TGG | + | chr8.3:62266544-62266563 | MS.gene57544:CDS | 30.0% | |
| TAAGAACTCTTGATATTGCA+AGG | + | chr8.3:62266299-62266318 | MS.gene57544:intron | 30.0% | |
| TGAGCTCAATCTAAAGATAA+TGG | + | chr8.3:62266125-62266144 | MS.gene57544:CDS | 30.0% | |
| TTAAATTGCAGCAAGAAAGT+TGG | - | chr8.3:62266329-62266348 | None:intergenic | 30.0% | |
| TTATGAATAATATCAGGTGC+TGG | + | chr8.3:62266048-62266067 | MS.gene57544:intron | 30.0% | |
| TTGGGACCGAAAATTATAAA+GGG | + | chr8.3:62265886-62265905 | MS.gene57544:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr8.3:62265895-62265914 | None:intergenic | 30.0% |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr8.3:62265676-62265695 | None:intergenic | 30.0% |
| !! | TATAGTGCTGATGATAATCT+TGG | + | chr8.3:62266159-62266178 | MS.gene57544:CDS | 30.0% |
| ACTACTGTGTTCATATGCAT+TGG | + | chr8.3:62265750-62265769 | MS.gene57544:intron | 35.0% | |
| AGAAATGTCTCATTCCATTG+AGG | - | chr8.3:62266081-62266100 | None:intergenic | 35.0% | |
| CACGATGATGATCAACAATA+GGG | - | chr8.3:62264980-62264999 | None:intergenic | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | + | chr8.3:62265885-62265904 | MS.gene57544:intron | 35.0% | |
| GAAATGTCTCATTCCATTGA+GGG | - | chr8.3:62266080-62266099 | None:intergenic | 35.0% | |
| GGATGAAAAATATTGTGGAG+AGG | + | chr8.3:62266549-62266568 | MS.gene57544:CDS | 35.0% | |
| TAATAGCACAATTCACAAGC+CGG | + | chr8.3:62264954-62264973 | MS.gene57544:intron | 35.0% | |
| TAATTGGAATACTCATGCCT+CGG | - | chr8.3:62265112-62265131 | None:intergenic | 35.0% | |
| TCTTGAATCACTGTCTCTAA+AGG | - | chr8.3:62266493-62266512 | None:intergenic | 35.0% | |
| TTAGAGACAGTGATTCAAGA+GGG | + | chr8.3:62266493-62266512 | MS.gene57544:CDS | 35.0% | |
| TTATGTGATCCTCACATACA+GGG | + | chr8.3:62265407-62265426 | MS.gene57544:CDS | 35.0% | |
| TTTAGAGACAGTGATTCAAG+AGG | + | chr8.3:62266492-62266511 | MS.gene57544:CDS | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | + | chr8.3:62266587-62266606 | MS.gene57544:intron | 35.0% |
| ! | GTAGATATTTTGCCGTTGTA+TGG | + | chr8.3:62265154-62265173 | MS.gene57544:intron | 35.0% |
| !! | TCGTCTTCTTTCGAGTTAAA+TGG | + | chr8.3:62266232-62266251 | MS.gene57544:intron | 35.0% |
| !! | TTCTATAGCCTTATTACCTC+AGG | - | chr8.3:62266598-62266617 | None:intergenic | 35.0% |
| !!! | GTTGTTTTGATCAGTGCTAA+AGG | + | chr8.3:62264663-62264682 | MS.gene57544:CDS | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr8.3:62265954-62265973 | MS.gene57544:intron | 35.0% |
| AATTGGAATACTCATGCCTC+GGG | - | chr8.3:62265111-62265130 | None:intergenic | 40.0% | |
| ACGGAGTTACAATCAAGAAG+AGG | + | chr8.3:62266699-62266718 | MS.gene57544:CDS | 40.0% | |
| ATATTGTGGAGAGGTTAAGG+TGG | + | chr8.3:62266558-62266577 | MS.gene57544:CDS | 40.0% | |
| ATGATGATCAACAATAGGGC+CGG | - | chr8.3:62264976-62264995 | None:intergenic | 40.0% | |
| CCACGATGATGATCAACAAT+AGG | - | chr8.3:62264981-62265000 | None:intergenic | 40.0% | |
| CCTATTGTTGATCATCATCG+TGG | + | chr8.3:62264978-62264997 | MS.gene57544:intron | 40.0% | |
| CGCTGCAACGTAATTATAAG+AGG | - | chr8.3:62265703-62265722 | None:intergenic | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | - | chr8.3:62265728-62265747 | None:intergenic | 40.0% | |
| CTCGAAAGAAGACGAATCAA+AGG | - | chr8.3:62266227-62266246 | None:intergenic | 40.0% | |
| CTGTATGTGAGGATCACATA+AGG | - | chr8.3:62265408-62265427 | None:intergenic | 40.0% | |
| CTTATGTGATCCTCACATAC+AGG | + | chr8.3:62265406-62265425 | MS.gene57544:CDS | 40.0% | |
| GAACTCACAACACCATACAA+CGG | - | chr8.3:62265169-62265188 | None:intergenic | 40.0% | |
| GGTTGCAGAGAAACTATGAA+CGG | + | chr8.3:62266680-62266699 | MS.gene57544:intron | 40.0% | |
| TACAATCAAGAAGAGGAGAC+TGG | + | chr8.3:62266706-62266725 | MS.gene57544:CDS | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr8.3:62265955-62265974 | MS.gene57544:intron | 40.0% |
| AATCAAGAAGAGGAGACTGG+TGG | + | chr8.3:62266709-62266728 | MS.gene57544:CDS | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | + | chr8.3:62265708-62265727 | MS.gene57544:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | + | chr8.3:62265709-62265728 | MS.gene57544:intron | 45.0% | |
| TGGATGGAAACAATCGGCTA+GGG | + | chr8.3:62266729-62266748 | MS.gene57544:CDS | 45.0% | |
| TGTCTACATTGCATAACCCG+AGG | + | chr8.3:62265092-62265111 | MS.gene57544:intron | 45.0% | |
| TGTCTCATTCCATTGAGGGT+TGG | - | chr8.3:62266076-62266095 | None:intergenic | 45.0% | |
| TGTTGATCATCATCGTGGTG+CGG | + | chr8.3:62264983-62265002 | MS.gene57544:intron | 45.0% | |
| ! | GACTGGTGGATGGAAACAAT+CGG | + | chr8.3:62266723-62266742 | MS.gene57544:CDS | 45.0% |
| !! | CACAAGAGTACTGTGCAAGA+AGG | + | chr8.3:62265438-62265457 | MS.gene57544:CDS | 45.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr8.3:62265917-62265936 | None:intergenic | 5.0% |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr8.3:62265971-62265990 | None:intergenic | 50.0% | |
| AAGAAGAGGAGACTGGTGGA+TGG | + | chr8.3:62266713-62266732 | MS.gene57544:CDS | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr8.3:62265970-62265989 | None:intergenic | 50.0% | |
| ACAACTTCAAGCGTTCCACG+AGG | - | chr8.3:62264648-62264667 | None:intergenic | 50.0% | |
| GTGGATGGAAACAATCGGCT+AGG | + | chr8.3:62266728-62266747 | MS.gene57544:CDS | 50.0% | |
| !! | GGCTCTCACTTTTACACCTG+AGG | + | chr8.3:62266579-62266598 | MS.gene57544:CDS | 50.0% |
| GATCCTCACATACAGGGCAC+AGG | + | chr8.3:62265413-62265432 | MS.gene57544:CDS | 55.0% | |
| GTGCTGGATCCAACCCTCAA+TGG | + | chr8.3:62266064-62266083 | MS.gene57544:CDS | 55.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr8.3:62265960-62265979 | MS.gene57544:intron | 60.0% | |
| GCTCCTGTGCCCTGTATGTG+AGG | - | chr8.3:62265419-62265438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 62264642 | 62266759 | 62264642 | ID=MS.gene57544 |
| chr8.3 | mRNA | 62264642 | 62266759 | 62264642 | ID=MS.gene57544.t1;Parent=MS.gene57544 |
| chr8.3 | exon | 62264642 | 62264708 | 62264642 | ID=MS.gene57544.t1.exon1;Parent=MS.gene57544.t1 |
| chr8.3 | CDS | 62264642 | 62264708 | 62264642 | ID=cds.MS.gene57544.t1;Parent=MS.gene57544.t1 |
| chr8.3 | exon | 62265394 | 62265459 | 62265394 | ID=MS.gene57544.t1.exon2;Parent=MS.gene57544.t1 |
| chr8.3 | CDS | 62265394 | 62265459 | 62265394 | ID=cds.MS.gene57544.t1;Parent=MS.gene57544.t1 |
| chr8.3 | exon | 62266064 | 62266190 | 62266064 | ID=MS.gene57544.t1.exon3;Parent=MS.gene57544.t1 |
| chr8.3 | CDS | 62266064 | 62266190 | 62266064 | ID=cds.MS.gene57544.t1;Parent=MS.gene57544.t1 |
| chr8.3 | exon | 62266486 | 62266600 | 62266486 | ID=MS.gene57544.t1.exon4;Parent=MS.gene57544.t1 |
| chr8.3 | CDS | 62266486 | 62266600 | 62266486 | ID=cds.MS.gene57544.t1;Parent=MS.gene57544.t1 |
| chr8.3 | exon | 62266688 | 62266759 | 62266688 | ID=MS.gene57544.t1.exon5;Parent=MS.gene57544.t1 |
| chr8.3 | CDS | 62266688 | 62266759 | 62266688 | ID=cds.MS.gene57544.t1;Parent=MS.gene57544.t1 |
| Gene Sequence |
| Protein sequence |
