Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57620.t1 | RHN64657.1 | 93.8 | 582 | 33 | 1 | 1 | 579 | 1 | 582 | 1.70E-282 | 981.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57620.t1 | B4I100 | 36.5 | 148 | 83 | 5 | 434 | 579 | 303 | 441 | 1.6e-15 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57620.t1 | G7JT76 | 93.8 | 582 | 33 | 1 | 1 | 579 | 1 | 582 | 1.2e-282 | 981.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051033 | MS.gene57620 | 0.804298 | 2.31E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57620.t1 | MTR_4g126780 | 93.299 | 582 | 36 | 1 | 1 | 579 | 1 | 582 | 0.0 | 1021 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTCAAAGATTGTATAAA+TGG | 0.203457 | 8.4:-7941859 | None:intergenic |
| AAGCGAGATTAATCCCTTAA+TGG | 0.216990 | 8.4:-7940742 | None:intergenic |
| CTCTGCTTGCAATGCTGTTT+TGG | 0.218692 | 8.4:+7940794 | MS.gene57620:CDS |
| ACTAAGTTGTGAAGCATTAA+TGG | 0.228723 | 8.4:-7941689 | None:intergenic |
| CTCTCTTAAGATTGGGATTA+GGG | 0.238825 | 8.4:+7941423 | MS.gene57620:CDS |
| TTCGGATTCCGAAACCATTA+AGG | 0.249259 | 8.4:+7940728 | MS.gene57620:CDS |
| TAAGGGATTAATCTCGCTTT+TGG | 0.249866 | 8.4:+7940746 | MS.gene57620:CDS |
| CCTTAGGTCTGTGTTTCTTC+AGG | 0.256122 | 8.4:+7941345 | MS.gene57620:intron |
| GGAGAAGAGAAGATTGAAAT+TGG | 0.267639 | 8.4:-7940563 | None:intergenic |
| CTGCGGCGCGGCGTGCGATT+GGG | 0.274980 | 8.4:-7940653 | None:intergenic |
| CATGAGGCTTATACAAATTA+TGG | 0.276224 | 8.4:+7942492 | MS.gene57620:CDS |
| GTTGGGATGATTGGAGAGTT+GGG | 0.276994 | 8.4:-7940454 | None:intergenic |
| ACTCTCTTAAGATTGGGATT+AGG | 0.279066 | 8.4:+7941422 | MS.gene57620:CDS |
| GATTAATCCCTTAATGGTTT+CGG | 0.301807 | 8.4:-7940736 | None:intergenic |
| AATGCTTCAGAAACACTTTC+GGG | 0.305132 | 8.4:-7941526 | None:intergenic |
| ATGTAGTTGCTCAACATTAC+AGG | 0.307990 | 8.4:-7941497 | None:intergenic |
| AGAAAATACTGTCCACTTCT+TGG | 0.308242 | 8.4:-7942340 | None:intergenic |
| TGGTGTGACGGAGGAAGATT+TGG | 0.313458 | 8.4:-7940589 | None:intergenic |
| TAATCTACCAGCAGGATATA+CGG | 0.318212 | 8.4:+7942010 | MS.gene57620:CDS |
| ACTCATCATTTGGTGATTAG+AGG | 0.355013 | 8.4:+7941583 | MS.gene57620:CDS |
| TAAAATACAGAGGTTCCTTA+TGG | 0.366889 | 8.4:-7942089 | None:intergenic |
| GATTTGTCCACCACCGCTTT+CGG | 0.368031 | 8.4:+7940816 | MS.gene57620:CDS |
| TCTGCGGCGCGGCGTGCGAT+TGG | 0.376092 | 8.4:-7940654 | None:intergenic |
| GGTGTTGAAGATGGTTCTCC+TGG | 0.376095 | 8.4:+7942513 | MS.gene57620:CDS |
| TACAATCTTTGAACTGGAAC+GGG | 0.379367 | 8.4:+7941866 | MS.gene57620:CDS |
| TTGGGGAGTGTGTGGAAGAT+AGG | 0.380094 | 8.4:-7940635 | None:intergenic |
| CATTTATACAATCTTTGAAC+TGG | 0.383242 | 8.4:+7941860 | MS.gene57620:CDS |
| ATTAGGGAAGATGAACTATC+AGG | 0.385850 | 8.4:+7941439 | MS.gene57620:CDS |
| GAATGCTTCAGAAACACTTT+CGG | 0.389861 | 8.4:-7941527 | None:intergenic |
| ACAAATTATGGTGTTGAAGA+TGG | 0.394846 | 8.4:+7942504 | MS.gene57620:CDS |
| GATGAAGGATTGGTTGGGGT+TGG | 0.399132 | 8.4:-7940526 | None:intergenic |
| TGCAAGTAACAGAGCGAATA+GGG | 0.402851 | 8.4:-7940478 | None:intergenic |
| CGTGTTTGTAAGAGTAATGT+TGG | 0.414377 | 8.4:+7941631 | MS.gene57620:CDS |
| GATACATTAGCACTTATGTT+TGG | 0.415272 | 8.4:+7942213 | MS.gene57620:CDS |
| ATGCAAGTAACAGAGCGAAT+AGG | 0.415411 | 8.4:-7940479 | None:intergenic |
| GAGAATAAAACTTTCCTATC+GGG | 0.416880 | 8.4:-7940774 | None:intergenic |
| ATCTTGCTGAAAGCATCTTT+AGG | 0.419670 | 8.4:+7941662 | MS.gene57620:CDS |
| AGCCTCATGTGGAAAACCTC+TGG | 0.424669 | 8.4:-7942478 | None:intergenic |
| GGCAAATGCTACTCATCATT+TGG | 0.426825 | 8.4:+7941573 | MS.gene57620:CDS |
| CCTCTTTGGACCACTTCAAA+TGG | 0.426991 | 8.4:-7941721 | None:intergenic |
| TTACCTCATTTAGGAAATTG+AGG | 0.433738 | 8.4:-7941966 | None:intergenic |
| TGTGTGGAAGATAGGAGAGT+TGG | 0.434686 | 8.4:-7940627 | None:intergenic |
| TCGGATTCCGAAACCATTAA+GGG | 0.437267 | 8.4:+7940729 | MS.gene57620:CDS |
| GAATAGGGTGTTGGGATGAT+TGG | 0.445610 | 8.4:-7940463 | None:intergenic |
| CTTTCATCCGGAATGCCATA+AGG | 0.457175 | 8.4:+7942074 | MS.gene57620:CDS |
| TGTTGGGATGATTGGAGAGT+TGG | 0.457238 | 8.4:-7940455 | None:intergenic |
| GATGTCCTTGTTAGAAGAAA+AGG | 0.464689 | 8.4:-7941805 | None:intergenic |
| CAACCTCAATACTGAGTGTA+AGG | 0.470385 | 8.4:-7942548 | None:intergenic |
| AACAGAGCGAATAGGGTGTT+GGG | 0.474206 | 8.4:-7940471 | None:intergenic |
| GAGCCTTCTAAAAGAGATAA+GGG | 0.475501 | 8.4:+7941552 | MS.gene57620:CDS |
| AGTTCAAAGATTGTATAAAT+GGG | 0.475739 | 8.4:-7941858 | None:intergenic |
| CAATTTCTTCGTTGATTTCG+AGG | 0.483259 | 8.4:-7940704 | None:intergenic |
| AGAGGTTCCTTATGGCATTC+CGG | 0.486061 | 8.4:-7942081 | None:intergenic |
| AGAGACACATTACTTTCATC+CGG | 0.488200 | 8.4:+7942062 | MS.gene57620:CDS |
| TGAGCCTTCTAAAAGAGATA+AGG | 0.493218 | 8.4:+7941551 | MS.gene57620:CDS |
| TGTCTCTTTGCCATTTGAAG+TGG | 0.493648 | 8.4:+7941711 | MS.gene57620:CDS |
| ATCTGTTTGTTTATTGTCTG+AGG | 0.496584 | 8.4:+7941384 | MS.gene57620:CDS |
| TGCGGCGCGGCGTGCGATTG+GGG | 0.497349 | 8.4:-7940652 | None:intergenic |
| CATCCTCAATTTCCTAAATG+AGG | 0.506655 | 8.4:+7941963 | MS.gene57620:CDS |
| CTTGAAGGATTGAATGAAGT+AGG | 0.507344 | 8.4:-7941900 | None:intergenic |
| GCACCTTACACTCAGTATTG+AGG | 0.508942 | 8.4:+7942545 | MS.gene57620:CDS |
| AGAGAATAAAACTTTCCTAT+CGG | 0.510112 | 8.4:-7940775 | None:intergenic |
| GCCAACCCTTGCGAATTAGC+TGG | 0.511122 | 8.4:-7942270 | None:intergenic |
| AATCAACGAAGAAATTGCTT+CGG | 0.513546 | 8.4:+7940710 | MS.gene57620:CDS |
| CGTTGATTTCGAGGGAAACG+AGG | 0.515868 | 8.4:-7940695 | None:intergenic |
| TAACAGAGCGAATAGGGTGT+TGG | 0.523086 | 8.4:-7940472 | None:intergenic |
| ATACAATCTTTGAACTGGAA+CGG | 0.524566 | 8.4:+7941865 | MS.gene57620:CDS |
| AGCTTACATTAGTTTGTGCA+AGG | 0.525610 | 8.4:-7940865 | None:intergenic |
| ATGTTGACCGAAAGCGGTGG+TGG | 0.531887 | 8.4:-7940823 | None:intergenic |
| AATCTACCAGCAGGATATAC+GGG | 0.532876 | 8.4:+7942011 | MS.gene57620:CDS |
| AATTTCTTCGTTGATTTCGA+GGG | 0.533655 | 8.4:-7940703 | None:intergenic |
| GATGTGAAATCTAATGTAGA+AGG | 0.535904 | 8.4:+7941607 | MS.gene57620:CDS |
| GTTGGAAGTAAAGCGAGGAT+TGG | 0.536082 | 8.4:-7940609 | None:intergenic |
| GGAGAGTTGGAAGTAAAGCG+AGG | 0.536230 | 8.4:-7940614 | None:intergenic |
| ACATTTACTTACTCAAAAGC+AGG | 0.537150 | 8.4:-7942573 | None:intergenic |
| CGCCGCGCCGCAGATATCAT+CGG | 0.543417 | 8.4:+7940663 | MS.gene57620:CDS |
| TTGTCGTATAATCTACCAGC+AGG | 0.544058 | 8.4:+7942002 | MS.gene57620:CDS |
| TAAGTGAGGTAACAGCTGAC+CGG | 0.544164 | 8.4:-7942367 | None:intergenic |
| AACAAGACACGAGATCTTGA+AGG | 0.544801 | 8.4:-7941915 | None:intergenic |
| TTCGAGGGAAACGAGGGAGG+CGG | 0.545195 | 8.4:-7940688 | None:intergenic |
| GCCTCATGTGGAAAACCTCT+GGG | 0.545616 | 8.4:-7942477 | None:intergenic |
| TTACAACCCGTATATCCTGC+TGG | 0.550038 | 8.4:-7942017 | None:intergenic |
| TCTGTTTGTTTATTGTCTGA+GGG | 0.550662 | 8.4:+7941385 | MS.gene57620:CDS |
| AAACATAAGTGCTAATGTAT+CGG | 0.552020 | 8.4:-7942211 | None:intergenic |
| GTAAGGTGCAACGAAAATCC+AGG | 0.552133 | 8.4:-7942531 | None:intergenic |
| ACCAGCTAATTCGCAAGGGT+TGG | 0.555094 | 8.4:+7942269 | MS.gene57620:CDS |
| AGAGAGTTCTTTCTCAAGGA+GGG | 0.556674 | 8.4:+7942438 | MS.gene57620:CDS |
| AAGAAGAGAGTTCTTTCTCA+AGG | 0.564370 | 8.4:+7942434 | MS.gene57620:CDS |
| AGGATTGAATGAAGTAGGAA+AGG | 0.564522 | 8.4:-7941895 | None:intergenic |
| TTAGGGAAGATGAACTATCA+GGG | 0.565013 | 8.4:+7941440 | MS.gene57620:CDS |
| CCATTTGAAGTGGTCCAAAG+AGG | 0.566306 | 8.4:+7941721 | MS.gene57620:CDS |
| TAAAGCGAGGATTGGTGTGA+CGG | 0.566336 | 8.4:-7940601 | None:intergenic |
| GTGCGAGCAAGCTTATAAAG+AGG | 0.574335 | 8.4:+7942131 | MS.gene57620:CDS |
| CACAGTGATCATCAAAGTGA+CGG | 0.574846 | 8.4:-7942293 | None:intergenic |
| ATTGGAGAGTTGGGATTGAG+AGG | 0.574863 | 8.4:-7940445 | None:intergenic |
| TTAACACCAGCTAATTCGCA+AGG | 0.576025 | 8.4:+7942264 | MS.gene57620:CDS |
| TGACGGAGGAAGATTTGGAG+AGG | 0.591725 | 8.4:-7940584 | None:intergenic |
| AAGTGAGGTAACAGCTGACC+GGG | 0.592077 | 8.4:-7942366 | None:intergenic |
| GTTGATTTCGAGGGAAACGA+GGG | 0.592213 | 8.4:-7940694 | None:intergenic |
| ACAGTGATCATCAAAGTGAC+GGG | 0.594087 | 8.4:-7942292 | None:intergenic |
| AATTAGCACCTACTGAAGGT+TGG | 0.594603 | 8.4:-7942236 | None:intergenic |
| ATGTTTGGCCAACCTTCAGT+AGG | 0.595377 | 8.4:+7942228 | MS.gene57620:CDS |
| GGTTATACTGTTGCCCTGCG+TGG | 0.606010 | 8.4:+7942153 | MS.gene57620:CDS |
| TGCGAGCAAGCTTATAAAGA+GGG | 0.609632 | 8.4:+7942132 | MS.gene57620:CDS |
| TCTTCTAACAAGGACATCGG+AGG | 0.615284 | 8.4:+7941810 | MS.gene57620:CDS |
| AAGAGAGTTCTTTCTCAAGG+AGG | 0.618388 | 8.4:+7942437 | MS.gene57620:CDS |
| TATAAATTAGCACCTACTGA+AGG | 0.624348 | 8.4:-7942240 | None:intergenic |
| TCGAAACTCGAGACCACGCA+GGG | 0.626428 | 8.4:-7942166 | None:intergenic |
| CACCGATGATATCTGCGGCG+CGG | 0.637304 | 8.4:-7940665 | None:intergenic |
| TAATTTGTATAAGCCTCATG+TGG | 0.642191 | 8.4:-7942489 | None:intergenic |
| ATCGAAACTCGAGACCACGC+AGG | 0.643371 | 8.4:-7942167 | None:intergenic |
| GGCGGCACCGATGATATCTG+CGG | 0.644632 | 8.4:-7940670 | None:intergenic |
| GATTTCGAGGGAAACGAGGG+AGG | 0.644934 | 8.4:-7940691 | None:intergenic |
| GCGTGCGATTGGGGAGTGTG+TGG | 0.646118 | 8.4:-7940643 | None:intergenic |
| AGCGAGGATTGGTGTGACGG+AGG | 0.647067 | 8.4:-7940598 | None:intergenic |
| GATGTATTGTATATTCCCAG+AGG | 0.649697 | 8.4:+7942462 | MS.gene57620:CDS |
| TAGGGAAGATGAACTATCAG+GGG | 0.668868 | 8.4:+7941441 | MS.gene57620:CDS |
| GATGCAGTTGTTGTATCTGA+CGG | 0.674799 | 8.4:+7940387 | MS.gene57620:CDS |
| AATGAGGTAAAAGATAGACT+AGG | 0.675108 | 8.4:+7941979 | MS.gene57620:CDS |
| TAACACCAGCTAATTCGCAA+GGG | 0.676166 | 8.4:+7942265 | MS.gene57620:CDS |
| CACTTATACGATAGTCTCTG+TGG | 0.676215 | 8.4:+7942384 | MS.gene57620:CDS |
| AAGTTGATGTTGACCGAAAG+CGG | 0.682839 | 8.4:-7940829 | None:intergenic |
| CAGAGACTATCGTATAAGTG+AGG | 0.697042 | 8.4:-7942381 | None:intergenic |
| TCTTCATTAGTAAAATACAG+AGG | 0.711213 | 8.4:-7942099 | None:intergenic |
| ATGCTTCAGAAACACTTTCG+GGG | 0.719935 | 8.4:-7941525 | None:intergenic |
| TTGATGTTGACCGAAAGCGG+TGG | 0.788656 | 8.4:-7940826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATAAACTATCATA+GGG | + | chr8.4:7941010-7941029 | MS.gene57620:intron | 15.0% |
| !!! | TTGTTTTTATAAACTATCAT+AGG | + | chr8.4:7941009-7941028 | MS.gene57620:intron | 15.0% |
| !! | AGTTCAAAGATTGTATAAAT+GGG | - | chr8.4:7941861-7941880 | None:intergenic | 20.0% |
| !! | GATATATTGAAAATTTCCTT+AGG | + | chr8.4:7941329-7941348 | MS.gene57620:intron | 20.0% |
| !! | TTTCTATAACAAAAGTTGTT+TGG | - | chr8.4:7941117-7941136 | None:intergenic | 20.0% |
| !!! | AAGATTTTCTCTCAAATTAT+TGG | + | chr8.4:7941773-7941792 | MS.gene57620:CDS | 20.0% |
| !!! | AGATTTTCTCTCAAATTATT+GGG | + | chr8.4:7941774-7941793 | MS.gene57620:CDS | 20.0% |
| !!! | GTTTTAATTTATCACTGTAT+AGG | + | chr8.4:7941255-7941274 | MS.gene57620:intron | 20.0% |
| ! | AAACATAAGTGCTAATGTAT+CGG | - | chr8.4:7942214-7942233 | None:intergenic | 25.0% |
| ! | AGAGAATAAAACTTTCCTAT+CGG | - | chr8.4:7940778-7940797 | None:intergenic | 25.0% |
| ! | CAGTTCAAAGATTGTATAAA+TGG | - | chr8.4:7941862-7941881 | None:intergenic | 25.0% |
| ! | CATTTATACAATCTTTGAAC+TGG | + | chr8.4:7941860-7941879 | MS.gene57620:CDS | 25.0% |
| ! | TCTTCATTAGTAAAATACAG+AGG | - | chr8.4:7942102-7942121 | None:intergenic | 25.0% |
| !!! | ATAAGCTATTTCTACAACAA+CGG | + | chr8.4:7940948-7940967 | MS.gene57620:intron | 25.0% |
| !!! | GAATAAGCATTTTTTGATGA+AGG | - | chr8.4:7940544-7940563 | None:intergenic | 25.0% |
| AAATAAAAGCTTTGCACGTT+AGG | - | chr8.4:7941225-7941244 | None:intergenic | 30.0% | |
| AATAAAAGCTTTGCACGTTA+GGG | - | chr8.4:7941224-7941243 | None:intergenic | 30.0% | |
| AATCAACGAAGAAATTGCTT+CGG | + | chr8.4:7940710-7940729 | MS.gene57620:CDS | 30.0% | |
| AATGAGGTAAAAGATAGACT+AGG | + | chr8.4:7941979-7941998 | MS.gene57620:CDS | 30.0% | |
| ACGGCGTTAAAAAAAAGAAA+AGG | + | chr8.4:7940406-7940425 | MS.gene57620:CDS | 30.0% | |
| ATACAATCTTTGAACTGGAA+CGG | + | chr8.4:7941865-7941884 | MS.gene57620:CDS | 30.0% | |
| ATCTGTTTGTTTATTGTCTG+AGG | + | chr8.4:7941384-7941403 | MS.gene57620:CDS | 30.0% | |
| CATGAGGCTTATACAAATTA+TGG | + | chr8.4:7942492-7942511 | MS.gene57620:CDS | 30.0% | |
| CATTAGTCGTTTATGTAAGT+AGG | + | chr8.4:7941072-7941091 | MS.gene57620:intron | 30.0% | |
| GAGAATAAAACTTTCCTATC+GGG | - | chr8.4:7940777-7940796 | None:intergenic | 30.0% | |
| GATACATTAGCACTTATGTT+TGG | + | chr8.4:7942213-7942232 | MS.gene57620:CDS | 30.0% | |
| GATGTGAAATCTAATGTAGA+AGG | + | chr8.4:7941607-7941626 | MS.gene57620:CDS | 30.0% | |
| GATTAATCCCTTAATGGTTT+CGG | - | chr8.4:7940739-7940758 | None:intergenic | 30.0% | |
| GTAAGTAGGTAAGCTTAAAT+AGG | + | chr8.4:7941086-7941105 | MS.gene57620:intron | 30.0% | |
| TAAAATACAGAGGTTCCTTA+TGG | - | chr8.4:7942092-7942111 | None:intergenic | 30.0% | |
| TATAAATTAGCACCTACTGA+AGG | - | chr8.4:7942243-7942262 | None:intergenic | 30.0% | |
| TCTGTTTGTTTATTGTCTGA+GGG | + | chr8.4:7941385-7941404 | MS.gene57620:CDS | 30.0% | |
| TTACCTCATTTAGGAAATTG+AGG | - | chr8.4:7941969-7941988 | None:intergenic | 30.0% | |
| ! | AAAGTAATGTGTCTCTTTTC+TGG | - | chr8.4:7942058-7942077 | None:intergenic | 30.0% |
| ! | ACAAATTATGGTGTTGAAGA+TGG | + | chr8.4:7942504-7942523 | MS.gene57620:CDS | 30.0% |
| ! | ACTAAGTTGTGAAGCATTAA+TGG | - | chr8.4:7941692-7941711 | None:intergenic | 30.0% |
| ! | AGTTTTCACTCTCTTAAGAT+TGG | + | chr8.4:7941415-7941434 | MS.gene57620:CDS | 30.0% |
| ! | GTCTATCTTTTACCTCATTT+AGG | - | chr8.4:7941978-7941997 | None:intergenic | 30.0% |
| ! | GTTTTCACTCTCTTAAGATT+GGG | + | chr8.4:7941416-7941435 | MS.gene57620:CDS | 30.0% |
| ! | TAATTTGTATAAGCCTCATG+TGG | - | chr8.4:7942492-7942511 | None:intergenic | 30.0% |
| ! | TTTCACCTTTTCTTCTAACA+AGG | + | chr8.4:7941800-7941819 | MS.gene57620:CDS | 30.0% |
| ! | TTTTCTTCTAACAAGGACAT+CGG | + | chr8.4:7941807-7941826 | MS.gene57620:CDS | 30.0% |
| !! | AATTTCTTCGTTGATTTCGA+GGG | - | chr8.4:7940706-7940725 | None:intergenic | 30.0% |
| !! | CACTTGAAAATCTGTTGTTT+TGG | + | chr8.4:7941307-7941326 | MS.gene57620:intron | 30.0% |
| !!! | AGCATTTTTTGATGAAGGAT+TGG | - | chr8.4:7940539-7940558 | None:intergenic | 30.0% |
| !!! | TTTTTGATGAAGGATTGGTT+GGG | - | chr8.4:7940534-7940553 | None:intergenic | 30.0% |
| !!! | TTTTTTGATGAAGGATTGGT+TGG | - | chr8.4:7940535-7940554 | None:intergenic | 30.0% |
| AAGAAGAGAGTTCTTTCTCA+AGG | + | chr8.4:7942434-7942453 | MS.gene57620:CDS | 35.0% | |
| AAGCGAGATTAATCCCTTAA+TGG | - | chr8.4:7940745-7940764 | None:intergenic | 35.0% | |
| AATGCTTCAGAAACACTTTC+GGG | - | chr8.4:7941529-7941548 | None:intergenic | 35.0% | |
| ACTCTCTTAAGATTGGGATT+AGG | + | chr8.4:7941422-7941441 | MS.gene57620:CDS | 35.0% | |
| AGAAAATACTGTCCACTTCT+TGG | - | chr8.4:7942343-7942362 | None:intergenic | 35.0% | |
| AGAGACACATTACTTTCATC+CGG | + | chr8.4:7942062-7942081 | MS.gene57620:CDS | 35.0% | |
| AGGATTGAATGAAGTAGGAA+AGG | - | chr8.4:7941898-7941917 | None:intergenic | 35.0% | |
| ATGTAGTTGCTCAACATTAC+AGG | - | chr8.4:7941500-7941519 | None:intergenic | 35.0% | |
| ATTAGGGAAGATGAACTATC+AGG | + | chr8.4:7941439-7941458 | MS.gene57620:CDS | 35.0% | |
| CATCCTCAATTTCCTAAATG+AGG | + | chr8.4:7941963-7941982 | MS.gene57620:CDS | 35.0% | |
| CGTGTTTGTAAGAGTAATGT+TGG | + | chr8.4:7941631-7941650 | MS.gene57620:CDS | 35.0% | |
| CTCTCTTAAGATTGGGATTA+GGG | + | chr8.4:7941423-7941442 | MS.gene57620:CDS | 35.0% | |
| CTTGAAGGATTGAATGAAGT+AGG | - | chr8.4:7941903-7941922 | None:intergenic | 35.0% | |
| GAATGCTTCAGAAACACTTT+CGG | - | chr8.4:7941530-7941549 | None:intergenic | 35.0% | |
| GATGTATTGTATATTCCCAG+AGG | + | chr8.4:7942462-7942481 | MS.gene57620:CDS | 35.0% | |
| GATGTCCTTGTTAGAAGAAA+AGG | - | chr8.4:7941808-7941827 | None:intergenic | 35.0% | |
| GGAGAAGAGAAGATTGAAAT+TGG | - | chr8.4:7940566-7940585 | None:intergenic | 35.0% | |
| TAATCTACCAGCAGGATATA+CGG | + | chr8.4:7942010-7942029 | MS.gene57620:CDS | 35.0% | |
| TACAATCTTTGAACTGGAAC+GGG | + | chr8.4:7941866-7941885 | MS.gene57620:CDS | 35.0% | |
| TTAGGGAAGATGAACTATCA+GGG | + | chr8.4:7941440-7941459 | MS.gene57620:CDS | 35.0% | |
| TTGAACCAAAAAGACCTCTT+TGG | - | chr8.4:7941738-7941757 | None:intergenic | 35.0% | |
| ! | AATGTGTCTCTTTTCTGGAT+TGG | - | chr8.4:7942053-7942072 | None:intergenic | 35.0% |
| ! | ACTCATCATTTGGTGATTAG+AGG | + | chr8.4:7941583-7941602 | MS.gene57620:CDS | 35.0% |
| ! | AGCTTTTGTACAGTCAACAT+CGG | - | chr8.4:7942412-7942431 | None:intergenic | 35.0% |
| ! | GAGCCTTCTAAAAGAGATAA+GGG | + | chr8.4:7941552-7941571 | MS.gene57620:CDS | 35.0% |
| ! | GTATTTGTCTGCCAGATTTT+TGG | + | chr8.4:7942315-7942334 | MS.gene57620:CDS | 35.0% |
| ! | TAAGGGATTAATCTCGCTTT+TGG | + | chr8.4:7940746-7940765 | MS.gene57620:CDS | 35.0% |
| ! | TGAGCCTTCTAAAAGAGATA+AGG | + | chr8.4:7941551-7941570 | MS.gene57620:CDS | 35.0% |
| ! | TTGCCCTTATCTCTTTTAGA+AGG | - | chr8.4:7941558-7941577 | None:intergenic | 35.0% |
| ! | TTGTTTTCCTATTGCTTCAG+AGG | + | chr8.4:7941933-7941952 | MS.gene57620:CDS | 35.0% |
| !! | AGCTTACATTAGTTTGTGCA+AGG | - | chr8.4:7940868-7940887 | None:intergenic | 35.0% |
| !! | ATCTTGCTGAAAGCATCTTT+AGG | + | chr8.4:7941662-7941681 | MS.gene57620:CDS | 35.0% |
| !! | CAATTTCTTCGTTGATTTCG+AGG | - | chr8.4:7940707-7940726 | None:intergenic | 35.0% |
| !! | TTATCTCTTTTAGAAGGCTC+AGG | - | chr8.4:7941552-7941571 | None:intergenic | 35.0% |
| !!! | TTTTGATGAAGGATTGGTTG+GGG | - | chr8.4:7940533-7940552 | None:intergenic | 35.0% |
| AACAAGACACGAGATCTTGA+AGG | - | chr8.4:7941918-7941937 | None:intergenic | 40.0% | |
| AAGAGAGTTCTTTCTCAAGG+AGG | + | chr8.4:7942437-7942456 | MS.gene57620:CDS | 40.0% | |
| AATCTACCAGCAGGATATAC+GGG | + | chr8.4:7942011-7942030 | MS.gene57620:CDS | 40.0% | |
| AATTAGCACCTACTGAAGGT+TGG | - | chr8.4:7942239-7942258 | None:intergenic | 40.0% | |
| ACAGTGATCATCAAAGTGAC+GGG | - | chr8.4:7942295-7942314 | None:intergenic | 40.0% | |
| ACTTCTTGGAGCCAAAAATC+TGG | - | chr8.4:7942329-7942348 | None:intergenic | 40.0% | |
| AGAGAGTTCTTTCTCAAGGA+GGG | + | chr8.4:7942438-7942457 | MS.gene57620:CDS | 40.0% | |
| ATGCAAGTAACAGAGCGAAT+AGG | - | chr8.4:7940482-7940501 | None:intergenic | 40.0% | |
| ATGCTTCAGAAACACTTTCG+GGG | - | chr8.4:7941528-7941547 | None:intergenic | 40.0% | |
| CAACCTCAATACTGAGTGTA+AGG | - | chr8.4:7942551-7942570 | None:intergenic | 40.0% | |
| CACAGTGATCATCAAAGTGA+CGG | - | chr8.4:7942296-7942315 | None:intergenic | 40.0% | |
| CACTTATACGATAGTCTCTG+TGG | + | chr8.4:7942384-7942403 | MS.gene57620:CDS | 40.0% | |
| CAGAGACTATCGTATAAGTG+AGG | - | chr8.4:7942384-7942403 | None:intergenic | 40.0% | |
| GATGCAGTTGTTGTATCTGA+CGG | + | chr8.4:7940387-7940406 | MS.gene57620:CDS | 40.0% | |
| GGCAAATGCTACTCATCATT+TGG | + | chr8.4:7941573-7941592 | MS.gene57620:CDS | 40.0% | |
| TAACACCAGCTAATTCGCAA+GGG | + | chr8.4:7942265-7942284 | MS.gene57620:CDS | 40.0% | |
| TAGGGAAGATGAACTATCAG+GGG | + | chr8.4:7941441-7941460 | MS.gene57620:CDS | 40.0% | |
| TCGGATTCCGAAACCATTAA+GGG | + | chr8.4:7940729-7940748 | MS.gene57620:CDS | 40.0% | |
| TGCAAGTAACAGAGCGAATA+GGG | - | chr8.4:7940481-7940500 | None:intergenic | 40.0% | |
| TGCGAGCAAGCTTATAAAGA+GGG | + | chr8.4:7942132-7942151 | MS.gene57620:CDS | 40.0% | |
| TTAACACCAGCTAATTCGCA+AGG | + | chr8.4:7942264-7942283 | MS.gene57620:CDS | 40.0% | |
| TTCGGATTCCGAAACCATTA+AGG | + | chr8.4:7940728-7940747 | MS.gene57620:CDS | 40.0% | |
| TTGTCGTATAATCTACCAGC+AGG | + | chr8.4:7942002-7942021 | MS.gene57620:CDS | 40.0% | |
| ! | TGTCTCTTTGCCATTTGAAG+TGG | + | chr8.4:7941711-7941730 | MS.gene57620:CDS | 40.0% |
| !! | AAGTTGATGTTGACCGAAAG+CGG | - | chr8.4:7940832-7940851 | None:intergenic | 40.0% |
| !!! | AGAGGTCTTTTTGGTTCAAG+TGG | + | chr8.4:7941739-7941758 | MS.gene57620:CDS | 40.0% |
| !!! | AGATTTTTGGCTCCAAGAAG+TGG | + | chr8.4:7942328-7942347 | MS.gene57620:CDS | 40.0% |
| !!! | TTTTGCTCCTCTGAAGCAAT+AGG | - | chr8.4:7941943-7941962 | None:intergenic | 40.0% |
| AGAGGTTCCTTATGGCATTC+CGG | - | chr8.4:7942084-7942103 | None:intergenic | 45.0% | |
| ATGTTTGGCCAACCTTCAGT+AGG | + | chr8.4:7942228-7942247 | MS.gene57620:CDS | 45.0% | |
| ATTGGAGAGTTGGGATTGAG+AGG | - | chr8.4:7940448-7940467 | None:intergenic | 45.0% | |
| CCTCTTTGGACCACTTCAAA+TGG | - | chr8.4:7941724-7941743 | None:intergenic | 45.0% | |
| CCTGAAGAAACACAGACCTA+AGG | - | chr8.4:7941348-7941367 | None:intergenic | 45.0% | |
| CCTTAGGTCTGTGTTTCTTC+AGG | + | chr8.4:7941345-7941364 | MS.gene57620:intron | 45.0% | |
| CTTTCATCCGGAATGCCATA+AGG | + | chr8.4:7942074-7942093 | MS.gene57620:CDS | 45.0% | |
| GCACCTTACACTCAGTATTG+AGG | + | chr8.4:7942545-7942564 | MS.gene57620:CDS | 45.0% | |
| GTAAGGTGCAACGAAAATCC+AGG | - | chr8.4:7942534-7942553 | None:intergenic | 45.0% | |
| GTGCGAGCAAGCTTATAAAG+AGG | + | chr8.4:7942131-7942150 | MS.gene57620:CDS | 45.0% | |
| GTTGGAAGTAAAGCGAGGAT+TGG | - | chr8.4:7940612-7940631 | None:intergenic | 45.0% | |
| GTTGGGATGATTGGAGAGTT+GGG | - | chr8.4:7940457-7940476 | None:intergenic | 45.0% | |
| TAACAGAGCGAATAGGGTGT+TGG | - | chr8.4:7940475-7940494 | None:intergenic | 45.0% | |
| TAAGTGAGGTAACAGCTGAC+CGG | - | chr8.4:7942370-7942389 | None:intergenic | 45.0% | |
| TCTTCTAACAAGGACATCGG+AGG | + | chr8.4:7941810-7941829 | MS.gene57620:CDS | 45.0% | |
| TGTGTGGAAGATAGGAGAGT+TGG | - | chr8.4:7940630-7940649 | None:intergenic | 45.0% | |
| TGTTGGGATGATTGGAGAGT+TGG | - | chr8.4:7940458-7940477 | None:intergenic | 45.0% | |
| TTACAACCCGTATATCCTGC+TGG | - | chr8.4:7942020-7942039 | None:intergenic | 45.0% | |
| ! | AACAGAGCGAATAGGGTGTT+GGG | - | chr8.4:7940474-7940493 | None:intergenic | 45.0% |
| ! | CCATTTGAAGTGGTCCAAAG+AGG | + | chr8.4:7941721-7941740 | MS.gene57620:CDS | 45.0% |
| ! | GTGGTCCAAAGAGGTCTTTT+TGG | + | chr8.4:7941730-7941749 | MS.gene57620:CDS | 45.0% |
| ! | GTTGATTTCGAGGGAAACGA+GGG | - | chr8.4:7940697-7940716 | None:intergenic | 45.0% |
| ! | TAAAGCGAGGATTGGTGTGA+CGG | - | chr8.4:7940604-7940623 | None:intergenic | 45.0% |
| ! | TGGACAGTATTTTCTCGACC+CGG | + | chr8.4:7942348-7942367 | MS.gene57620:CDS | 45.0% |
| !! | CTCTGCTTGCAATGCTGTTT+TGG | + | chr8.4:7940794-7940813 | MS.gene57620:CDS | 45.0% |
| !! | GAATAGGGTGTTGGGATGAT+TGG | - | chr8.4:7940466-7940485 | None:intergenic | 45.0% |
| !! | TTGCACGTTAGGGCTTTGTT+TGG | - | chr8.4:7941214-7941233 | None:intergenic | 45.0% |
| !!! | CTCTTTTCTGGATTGGCTCT+CGG | - | chr8.4:7942046-7942065 | None:intergenic | 45.0% |
| AAGTGAGGTAACAGCTGACC+GGG | - | chr8.4:7942369-7942388 | None:intergenic | 50.0% | |
| ACCAGCTAATTCGCAAGGGT+TGG | + | chr8.4:7942269-7942288 | MS.gene57620:CDS | 50.0% | |
| AGCCTCATGTGGAAAACCTC+TGG | - | chr8.4:7942481-7942500 | None:intergenic | 50.0% | |
| GATTTGTCCACCACCGCTTT+CGG | + | chr8.4:7940816-7940835 | MS.gene57620:CDS | 50.0% | |
| GCCTCATGTGGAAAACCTCT+GGG | - | chr8.4:7942480-7942499 | None:intergenic | 50.0% | |
| GGAGAGTTGGAAGTAAAGCG+AGG | - | chr8.4:7940617-7940636 | None:intergenic | 50.0% | |
| TGACGGAGGAAGATTTGGAG+AGG | - | chr8.4:7940587-7940606 | None:intergenic | 50.0% | |
| TTGATGTTGACCGAAAGCGG+TGG | - | chr8.4:7940829-7940848 | None:intergenic | 50.0% | |
| ! | GGTGTTGAAGATGGTTCTCC+TGG | + | chr8.4:7942513-7942532 | MS.gene57620:CDS | 50.0% |
| ! | TCCCAGAGGTTTTCCACATG+AGG | + | chr8.4:7942476-7942495 | MS.gene57620:CDS | 50.0% |
| ! | TGGTGTGACGGAGGAAGATT+TGG | - | chr8.4:7940592-7940611 | None:intergenic | 50.0% |
| ! | TTGGGGAGTGTGTGGAAGAT+AGG | - | chr8.4:7940638-7940657 | None:intergenic | 50.0% |
| !! | CGCTTTTGGAGAATCCCGAT+AGG | + | chr8.4:7940760-7940779 | MS.gene57620:CDS | 50.0% |
| !! | CGTTGATTTCGAGGGAAACG+AGG | - | chr8.4:7940698-7940717 | None:intergenic | 50.0% |
| !! | GATGAAGGATTGGTTGGGGT+TGG | - | chr8.4:7940529-7940548 | None:intergenic | 50.0% |
| ATCGAAACTCGAGACCACGC+AGG | - | chr8.4:7942170-7942189 | None:intergenic | 55.0% | |
| ATGTTGACCGAAAGCGGTGG+TGG | - | chr8.4:7940826-7940845 | None:intergenic | 55.0% | |
| GATTTCGAGGGAAACGAGGG+AGG | - | chr8.4:7940694-7940713 | None:intergenic | 55.0% | |
| GCCAACCCTTGCGAATTAGC+TGG | - | chr8.4:7942273-7942292 | None:intergenic | 55.0% | |
| GGTTATACTGTTGCCCTGCG+TGG | + | chr8.4:7942153-7942172 | MS.gene57620:CDS | 55.0% | |
| TCGAAACTCGAGACCACGCA+GGG | - | chr8.4:7942169-7942188 | None:intergenic | 55.0% | |
| CACCGATGATATCTGCGGCG+CGG | - | chr8.4:7940668-7940687 | None:intergenic | 60.0% | |
| TTCGAGGGAAACGAGGGAGG+CGG | - | chr8.4:7940691-7940710 | None:intergenic | 60.0% | |
| ! | AGCGAGGATTGGTGTGACGG+AGG | - | chr8.4:7940601-7940620 | None:intergenic | 60.0% |
| !! | GGCGGCACCGATGATATCTG+CGG | - | chr8.4:7940673-7940692 | None:intergenic | 60.0% |
| CGCCGCGCCGCAGATATCAT+CGG | + | chr8.4:7940663-7940682 | MS.gene57620:CDS | 65.0% | |
| ! | GCGTGCGATTGGGGAGTGTG+TGG | - | chr8.4:7940646-7940665 | None:intergenic | 65.0% |
| CTGCGGCGCGGCGTGCGATT+GGG | - | chr8.4:7940656-7940675 | None:intergenic | 75.0% | |
| TCTGCGGCGCGGCGTGCGAT+TGG | - | chr8.4:7940657-7940676 | None:intergenic | 75.0% | |
| TGCGGCGCGGCGTGCGATTG+GGG | - | chr8.4:7940655-7940674 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7940375 | 7942583 | 7940375 | ID=MS.gene57620 |
| chr8.4 | mRNA | 7940375 | 7942583 | 7940375 | ID=MS.gene57620.t1;Parent=MS.gene57620 |
| chr8.4 | exon | 7940375 | 7940880 | 7940375 | ID=MS.gene57620.t1.exon1;Parent=MS.gene57620.t1 |
| chr8.4 | CDS | 7940375 | 7940880 | 7940375 | ID=cds.MS.gene57620.t1;Parent=MS.gene57620.t1 |
| chr8.4 | exon | 7941351 | 7942583 | 7941351 | ID=MS.gene57620.t1.exon2;Parent=MS.gene57620.t1 |
| chr8.4 | CDS | 7941351 | 7942583 | 7941351 | ID=cds.MS.gene57620.t1;Parent=MS.gene57620.t1 |
| Gene Sequence |
| Protein sequence |
