Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57715.t1 | XP_013458134.1 | 98.6 | 738 | 9 | 1 | 1 | 738 | 1 | 737 | 0.00E+00 | 1418.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57715.t1 | Q8VZF6 | 31.6 | 740 | 439 | 16 | 27 | 734 | 8 | 712 | 6.3e-81 | 303.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57715.t1 | A0A072V208 | 98.6 | 738 | 9 | 1 | 1 | 738 | 1 | 737 | 0.0e+00 | 1418.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057469 | MS.gene57715 | 0.801385 | 9.23E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57715.t1 | MTR_4g116840 | 98.780 | 738 | 8 | 1 | 1 | 738 | 1 | 737 | 0.0 | 1507 |
MS.gene57715.t1 | MTR_2g449780 | 76.144 | 721 | 171 | 1 | 19 | 738 | 20 | 740 | 0.0 | 1180 |
MS.gene57715.t1 | MTR_5g027200 | 30.094 | 741 | 451 | 17 | 27 | 734 | 9 | 715 | 3.71e-98 | 319 |
MS.gene57715.t1 | MTR_5g027200 | 30.189 | 742 | 450 | 18 | 27 | 734 | 9 | 716 | 2.34e-97 | 317 |
MS.gene57715.t1 | MTR_2g094620 | 29.086 | 777 | 444 | 21 | 11 | 737 | 7 | 726 | 1.01e-95 | 313 |
MS.gene57715.t1 | MTR_1g094890 | 28.307 | 756 | 449 | 18 | 27 | 734 | 3 | 713 | 8.51e-90 | 297 |
MS.gene57715.t1 | MTR_2g094620 | 26.512 | 777 | 430 | 22 | 11 | 737 | 7 | 692 | 4.71e-73 | 251 |
MS.gene57715.t1 | MTR_2g094620 | 26.918 | 717 | 417 | 21 | 11 | 677 | 7 | 666 | 2.66e-71 | 246 |
MS.gene57715.t1 | MTR_4g067360 | 43.304 | 224 | 121 | 2 | 520 | 737 | 32 | 255 | 2.56e-59 | 202 |
MS.gene57715.t1 | MTR_3g105780 | 43.515 | 239 | 121 | 5 | 509 | 736 | 29 | 264 | 1.24e-58 | 201 |
MS.gene57715.t1 | MTR_7g011790 | 26.531 | 245 | 143 | 8 | 522 | 730 | 294 | 537 | 8.28e-14 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57715.t1 | AT5G35180 | 69.722 | 720 | 209 | 5 | 26 | 738 | 61 | 778 | 0.0 | 1044 |
MS.gene57715.t1 | AT5G35180 | 69.680 | 719 | 209 | 5 | 26 | 737 | 61 | 777 | 0.0 | 1043 |
MS.gene57715.t1 | AT5G35180 | 69.295 | 723 | 209 | 6 | 26 | 737 | 61 | 781 | 0.0 | 1036 |
MS.gene57715.t1 | AT5G35180 | 66.622 | 752 | 209 | 7 | 26 | 737 | 61 | 810 | 0.0 | 1018 |
MS.gene57715.t1 | AT5G35180 | 64.896 | 527 | 176 | 5 | 26 | 545 | 61 | 585 | 0.0 | 712 |
MS.gene57715.t1 | AT4G19040 | 29.810 | 738 | 454 | 18 | 27 | 734 | 8 | 711 | 9.25e-96 | 313 |
MS.gene57715.t1 | AT4G19040 | 29.744 | 743 | 453 | 18 | 27 | 734 | 8 | 716 | 9.65e-96 | 313 |
MS.gene57715.t1 | AT4G19040 | 29.825 | 741 | 452 | 19 | 27 | 734 | 8 | 713 | 2.91e-94 | 309 |
MS.gene57715.t1 | AT2G28320 | 29.134 | 762 | 459 | 17 | 21 | 736 | 9 | 735 | 4.28e-94 | 309 |
MS.gene57715.t1 | AT5G45560 | 29.278 | 748 | 446 | 18 | 27 | 734 | 8 | 712 | 1.94e-93 | 306 |
MS.gene57715.t1 | AT3G54800 | 27.836 | 758 | 458 | 17 | 27 | 734 | 12 | 730 | 2.86e-85 | 285 |
MS.gene57715.t1 | AT3G54800 | 27.836 | 758 | 458 | 17 | 27 | 734 | 12 | 730 | 2.86e-85 | 285 |
MS.gene57715.t1 | AT5G45560 | 31.081 | 592 | 343 | 14 | 169 | 734 | 71 | 623 | 4.77e-80 | 268 |
MS.gene57715.t1 | AT1G06050 | 46.087 | 230 | 117 | 2 | 516 | 738 | 29 | 258 | 6.00e-63 | 213 |
MS.gene57715.t1 | AT5G10750 | 43.162 | 234 | 125 | 2 | 509 | 734 | 39 | 272 | 3.14e-57 | 197 |
MS.gene57715.t1 | AT5G25010 | 42.727 | 220 | 121 | 4 | 520 | 734 | 47 | 266 | 1.54e-51 | 181 |
MS.gene57715.t1 | AT5G24990 | 42.534 | 221 | 121 | 5 | 520 | 734 | 47 | 267 | 8.01e-51 | 179 |
MS.gene57715.t1 | AT5G25020 | 37.727 | 220 | 103 | 5 | 520 | 734 | 48 | 238 | 2.97e-38 | 144 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAACTTACTTCTCCCTTTC+TGG | 0.105636 | 8.3:+9265060 | None:intergenic |
AATGGAAGCATCAGATATTT+TGG | 0.198293 | 8.3:+9258637 | None:intergenic |
GCCATACCATTGGAGGTTTA+AGG | 0.204857 | 8.3:-9250503 | None:intergenic |
GTGTGGGTCACTAGACATTT+TGG | 0.213649 | 8.3:+9259210 | None:intergenic |
TTCATTGGGTATAGGGATAT+TGG | 0.249096 | 8.3:-9252355 | MS.gene57715:intron |
ATGCAGATTGACGTGGATAT+TGG | 0.295886 | 8.3:-9251645 | MS.gene57715:intron |
GCATCCTAGGTGTTTGGTTC+AGG | 0.296795 | 8.3:-9255639 | MS.gene57715:intron |
GGAACCAAAGCTTGCCTGTT+AGG | 0.302377 | 8.3:-9252314 | MS.gene57715:CDS |
AAGTTACAGCTTTCCCTAAC+AGG | 0.316730 | 8.3:+9252300 | None:intergenic |
GACACAAACCTCTATCAAAA+TGG | 0.323358 | 8.3:+9251551 | None:intergenic |
TGCCCTGCATCCTAGGTGTT+TGG | 0.325029 | 8.3:-9255645 | MS.gene57715:CDS |
CAAGTTTCAAACGGTTTAAT+CGG | 0.333056 | 8.3:+9250531 | None:intergenic |
GGAAAAGGATTTATGATTAG+AGG | 0.335637 | 8.3:-9256208 | MS.gene57715:CDS |
TATAGAACCAAACTGTAGTT+TGG | 0.365774 | 8.3:+9252561 | None:intergenic |
TTGATGGAAGTGATGTGTTC+CGG | 0.366440 | 8.3:-9252488 | MS.gene57715:CDS |
CCAACAACTCCCTTCCTAAT+CGG | 0.370291 | 8.3:+9265358 | None:intergenic |
TTCATATTCAGAACTGGAAA+TGG | 0.375338 | 8.3:+9258619 | None:intergenic |
TCCTGATCTAAGCGAAGAAT+TGG | 0.380068 | 8.3:-9256332 | MS.gene57715:CDS |
GACACTATGATGTTGTTTAC+GGG | 0.381135 | 8.3:-9260509 | MS.gene57715:CDS |
GAGCTTGTAGATTCTTATGA+TGG | 0.386736 | 8.3:-9260531 | MS.gene57715:CDS |
GTGCTACAGCTGGGGAAGCC+CGG | 0.391375 | 8.3:-9263943 | MS.gene57715:CDS |
TTTGTTCTTCCATCGATTCC+AGG | 0.393149 | 8.3:+9259167 | None:intergenic |
TTGTTCTTTGCAGAATGGTA+AGG | 0.394015 | 8.3:-9261031 | MS.gene57715:intron |
TTAAGCTCATAGCAGTAGAT+TGG | 0.399507 | 8.3:-9255697 | MS.gene57715:CDS |
CCTATGTGCAGAAACCGATT+AGG | 0.400153 | 8.3:-9265372 | MS.gene57715:intron |
TGCTACAGCTGGGGAAGCCC+GGG | 0.402315 | 8.3:-9263942 | MS.gene57715:CDS |
GGACACTATGATGTTGTTTA+CGG | 0.402478 | 8.3:-9260510 | MS.gene57715:CDS |
TTCTTGGTGGAGAGCTGGAT+TGG | 0.402744 | 8.3:+9258682 | None:intergenic |
CAGAAATTTGAACGCACCTA+TGG | 0.403827 | 8.3:-9259244 | MS.gene57715:CDS |
TTCATCTTCATATTCAGAAC+TGG | 0.404285 | 8.3:+9258613 | None:intergenic |
CTCCATGTTTAGTCTGTCTC+TGG | 0.404516 | 8.3:+9263619 | None:intergenic |
TGCTAAACCAAACTACAGTT+TGG | 0.405130 | 8.3:-9252568 | MS.gene57715:CDS |
CTGTTGGCTAAGTTTGTTGA+TGG | 0.410520 | 8.3:-9252504 | MS.gene57715:CDS |
TTTCCCTAACAGGCAAGCTT+TGG | 0.420695 | 8.3:+9252310 | None:intergenic |
CTATCTTAAAGATAATTCTA+AGG | 0.422987 | 8.3:-9256179 | MS.gene57715:intron |
TATCCTTGTCGTTAATCTGC+AGG | 0.423100 | 8.3:-9253206 | MS.gene57715:intron |
AGATTAACGACAAGGATAAA+TGG | 0.426077 | 8.3:+9253211 | None:intergenic |
TGATGGAAGTGATGTGTTCC+GGG | 0.427113 | 8.3:-9252487 | MS.gene57715:CDS |
CCGATTAGGAAGGGAGTTGT+TGG | 0.431236 | 8.3:-9265358 | MS.gene57715:CDS |
GAGCTACCAGAATACATTCT+TGG | 0.431854 | 8.3:-9250560 | MS.gene57715:CDS |
TCGTCGGAGTTGAGCAAATC+GGG | 0.435995 | 8.3:-9266042 | MS.gene57715:CDS |
TGGACTTCTCCTAGTGGAAA+AGG | 0.436033 | 8.3:-9256223 | MS.gene57715:CDS |
AGCTCCTCCACCATTAGTGT+GGG | 0.439748 | 8.3:+9265334 | None:intergenic |
GGCGGTATGCCCACGGACTA+AGG | 0.441611 | 8.3:-9263105 | MS.gene57715:CDS |
CAGCTGGGGAAGCCCGGGGA+TGG | 0.444191 | 8.3:-9263937 | MS.gene57715:CDS |
TCCAATTCTTCGCTTAGATC+AGG | 0.446909 | 8.3:+9256331 | None:intergenic |
ATAGAATTGCCCTGCATCCT+AGG | 0.447409 | 8.3:-9255652 | MS.gene57715:CDS |
ACAGTTCCAAGAATGTATTC+TGG | 0.448564 | 8.3:+9250554 | None:intergenic |
GAGAAGACAAAATCCTGCTT+TGG | 0.454518 | 8.3:+9260025 | None:intergenic |
AGTTGTTGGCCCCACACTAA+TGG | 0.454665 | 8.3:-9265344 | MS.gene57715:CDS |
TTCTCTCGTCAATGGTTTCG+TGG | 0.457489 | 8.3:-9260007 | MS.gene57715:CDS |
AGTTGGCTGGTAGGCCAGAC+AGG | 0.458660 | 8.3:-9262729 | MS.gene57715:CDS |
AAACTGTAGTTTGGTTTAGC+AGG | 0.459208 | 8.3:+9252570 | None:intergenic |
ATTTGATCATGCCAAGCAAC+AGG | 0.460192 | 8.3:-9263906 | MS.gene57715:intron |
TCAAACTAAAGAATGTTTCA+TGG | 0.461930 | 8.3:-9258357 | MS.gene57715:CDS |
TGGAGATACATTCTGAATCC+TGG | 0.465453 | 8.3:-9259185 | MS.gene57715:CDS |
CTATCCCCTTCAAACCTGTC+TGG | 0.466568 | 8.3:+9262715 | None:intergenic |
TGAATCTGCCATACCATTGG+AGG | 0.466969 | 8.3:-9250510 | MS.gene57715:CDS |
ATGAGGATCGCGCTTGTACA+TGG | 0.467319 | 8.3:+9265906 | None:intergenic |
TCGCATACCTCAACTATACT+TGG | 0.467845 | 8.3:+9252444 | None:intergenic |
AAGATTGCTTGTGCTACAGC+TGG | 0.468677 | 8.3:-9263953 | MS.gene57715:CDS |
GACAGGTTTGAAGGGGATAG+TGG | 0.470480 | 8.3:-9262712 | MS.gene57715:CDS |
GATTACCGGGATAGATACTT+AGG | 0.471477 | 8.3:+9260477 | None:intergenic |
GAACCAAAGCTTGCCTGTTA+GGG | 0.471550 | 8.3:-9252313 | MS.gene57715:CDS |
GAACCAAACACCTAGGATGC+AGG | 0.472343 | 8.3:+9255642 | None:intergenic |
AAATAATGGTTCAGGTCTAA+AGG | 0.472794 | 8.3:-9258717 | MS.gene57715:intron |
CGTCGATAACCAGATCTTTG+AGG | 0.474516 | 8.3:+9259486 | None:intergenic |
GGTAGGCCAGACAGGTTTGA+AGG | 0.477074 | 8.3:-9262721 | MS.gene57715:CDS |
AAAGAACCATGTATGTCGTT+TGG | 0.480885 | 8.3:+9256280 | None:intergenic |
TGGGCATACCGCCTCACTCT+AGG | 0.482620 | 8.3:+9263115 | None:intergenic |
GATTGCCGTAACAATGTCTC+CGG | 0.483434 | 8.3:+9262757 | None:intergenic |
TTAGTAGAACATACAATGGC+AGG | 0.484334 | 8.3:+9265877 | None:intergenic |
TGGTTCTTTGCGCAAAGGAA+TGG | 0.487425 | 8.3:-9256266 | MS.gene57715:CDS |
GTTACGGCAATCATCAAAGT+TGG | 0.488734 | 8.3:-9262746 | MS.gene57715:CDS |
TGGGGAAGCCCGGGGATGGA+TGG | 0.489574 | 8.3:-9263933 | MS.gene57715:CDS |
TCGATTAGATGAGGCCAGAA+AGG | 0.490102 | 8.3:-9265074 | MS.gene57715:CDS |
TGTTCTTTGCAGAATGGTAA+GGG | 0.491837 | 8.3:-9261030 | MS.gene57715:intron |
GTCGTCGGAGTTGAGCAAAT+CGG | 0.492783 | 8.3:-9266043 | MS.gene57715:CDS |
GCGATGGACGCAATTGCAGC+AGG | 0.494054 | 8.3:-9266072 | MS.gene57715:CDS |
TTCTGGCTGTAGCATCTACA+TGG | 0.500081 | 8.3:-9259272 | MS.gene57715:intron |
CACTTAGGAGTCAATTCCAT+TGG | 0.500435 | 8.3:-9265979 | MS.gene57715:CDS |
ACCCAGGTGGCATCCAAAGC+AGG | 0.504924 | 8.3:-9260038 | MS.gene57715:intron |
TTTGGAAGGATCAATCTTGA+AGG | 0.505605 | 8.3:-9263145 | MS.gene57715:intron |
TGGATGGTTAAGAGAGCAGT+TGG | 0.506209 | 8.3:-9252335 | MS.gene57715:CDS |
ATGACAATGACACAAATTGT+TGG | 0.508547 | 8.3:-9256243 | MS.gene57715:CDS |
TGCAGTTCGCTTCAAAGCTA+AGG | 0.510251 | 8.3:+9258324 | None:intergenic |
CAAGGATGTTTCTGATCACA+AGG | 0.511071 | 8.3:-9261803 | MS.gene57715:intron |
TCTGTAGCTAGAGGTGTCAT+TGG | 0.514707 | 8.3:-9251615 | MS.gene57715:CDS |
TGATGAGAAGCATGATCAAA+AGG | 0.514745 | 8.3:-9258525 | MS.gene57715:intron |
AAAATTGTCATGCAGGTAGT+TGG | 0.515602 | 8.3:-9255734 | MS.gene57715:intron |
AACCATGTATGTCGTTTGGA+TGG | 0.515607 | 8.3:+9256284 | None:intergenic |
CAATGGTTTCGTGGACAAGA+TGG | 0.518901 | 8.3:-9259998 | MS.gene57715:CDS |
CAAATGCTTCCATCCATCCC+CGG | 0.520261 | 8.3:+9263924 | None:intergenic |
GGTGTCATTGGCCTTGTGCT+AGG | 0.520532 | 8.3:-9251603 | MS.gene57715:CDS |
CGGAGAGAAGTAGCTTCGGT+TGG | 0.520719 | 8.3:-9266008 | MS.gene57715:CDS |
TAGCTCCTCCACCATTAGTG+TGG | 0.521419 | 8.3:+9265333 | None:intergenic |
ACACAGTTGAAGCACATCAA+TGG | 0.523646 | 8.3:-9262687 | MS.gene57715:CDS |
ACACTAATGGTGGAGGAGCT+AGG | 0.526606 | 8.3:-9265331 | MS.gene57715:CDS |
TGGCAGATTCAAGTTTCAAA+CGG | 0.531155 | 8.3:+9250522 | None:intergenic |
ACATTACTGTGCCTAGTGGC+AGG | 0.532442 | 8.3:-9259111 | MS.gene57715:intron |
AAGCGAAGAATTGGATCCTC+GGG | 0.532728 | 8.3:-9256323 | MS.gene57715:CDS |
TTAGCTTTGAAGCGAACTGC+AGG | 0.534732 | 8.3:-9258322 | MS.gene57715:intron |
ACTTGAATCTGCCATACCAT+TGG | 0.535494 | 8.3:-9250513 | MS.gene57715:CDS |
AGAAATTTGAACGCACCTAT+GGG | 0.535993 | 8.3:-9259243 | MS.gene57715:CDS |
AGATTGCTTGTGCTACAGCT+GGG | 0.539636 | 8.3:-9263952 | MS.gene57715:CDS |
TTATTAGCTTCCTTAGTCCG+TGG | 0.541837 | 8.3:+9263095 | None:intergenic |
ATTCTGAATCCTGGAATCGA+TGG | 0.544859 | 8.3:-9259176 | MS.gene57715:CDS |
ATGTCTAGTGACCCACACTT+TGG | 0.546309 | 8.3:-9259205 | MS.gene57715:CDS |
CGGCAATCATCAAAGTTGGC+TGG | 0.546492 | 8.3:-9262742 | MS.gene57715:CDS |
CGATTAGATGAGGCCAGAAA+GGG | 0.546785 | 8.3:-9265073 | MS.gene57715:CDS |
TATTAGCTTCCTTAGTCCGT+GGG | 0.547587 | 8.3:+9263096 | None:intergenic |
ACCTTAAACCTCCAATGGTA+TGG | 0.548721 | 8.3:+9250502 | None:intergenic |
GGAATCGATGGAAGAACAAA+CGG | 0.551652 | 8.3:-9259164 | MS.gene57715:CDS |
ACTAGGCACAGTAATGTGTA+AGG | 0.551782 | 8.3:+9259117 | None:intergenic |
GGATCGGAGAGAAGTAGCTT+CGG | 0.552381 | 8.3:-9266012 | MS.gene57715:CDS |
GTCGCCGAAAAGTCAACGAT+GGG | 0.554061 | 8.3:-9265309 | MS.gene57715:CDS |
CAAACTAAAGAATGTTTCAT+GGG | 0.556903 | 8.3:-9258356 | MS.gene57715:CDS |
TCGTTTGGATGGATTGTGGT+AGG | 0.557010 | 8.3:+9256295 | None:intergenic |
GGAGAGAAGTAGCTTCGGTT+GGG | 0.560979 | 8.3:-9266007 | MS.gene57715:CDS |
GGCTGCTGAATCATCGTCAT+CGG | 0.563001 | 8.3:-9258564 | MS.gene57715:CDS |
ATGACAATACTGACGACCAA+TGG | 0.563811 | 8.3:+9265963 | None:intergenic |
AAATGCTTCCATCCATCCCC+GGG | 0.565648 | 8.3:+9263925 | None:intergenic |
ATTGTCATGCAGGTAGTTGG+CGG | 0.566510 | 8.3:-9255731 | MS.gene57715:intron |
TTGAGCAAATCGGGTAGCAA+AGG | 0.567129 | 8.3:-9266033 | MS.gene57715:CDS |
TAAGCGAAGAATTGGATCCT+CGG | 0.567526 | 8.3:-9256324 | MS.gene57715:CDS |
TTCGGTTGGGTATATCACTT+AGG | 0.568294 | 8.3:-9265994 | MS.gene57715:CDS |
AAATGGCAAGGTCAACGACT+AGG | 0.570517 | 8.3:+9251568 | None:intergenic |
TAAGTTTGAATCTCGAGTCC+CGG | 0.570533 | 8.3:+9252469 | None:intergenic |
TTGGGTATAGGGATATTGGA+TGG | 0.572635 | 8.3:-9252351 | MS.gene57715:intron |
CAGAATGTATCTCCAAAGTG+TGG | 0.577263 | 8.3:+9259193 | None:intergenic |
ATCCATCCAAACGACATACA+TGG | 0.577358 | 8.3:-9256286 | MS.gene57715:CDS |
TGCAGCAGGTTCATCGTCGT+CGG | 0.578050 | 8.3:-9266058 | MS.gene57715:CDS |
GTAGGCCAGACAGGTTTGAA+GGG | 0.579618 | 8.3:-9262720 | MS.gene57715:CDS |
AAATGTGTCCATACTGTGGC+TGG | 0.582014 | 8.3:-9262664 | MS.gene57715:intron |
CAAATACTTAACCTGCCACT+AGG | 0.585853 | 8.3:+9259100 | None:intergenic |
AATCATCAAAGTTGGCTGGT+AGG | 0.587835 | 8.3:-9262738 | MS.gene57715:CDS |
TGCCAGAGACAGACTAAACA+TGG | 0.594024 | 8.3:-9263621 | MS.gene57715:CDS |
ACCACTTGACAATTCATACT+CGG | 0.594026 | 8.3:+9263649 | None:intergenic |
TTTGGGCTATTTGATCCCAT+AGG | 0.594534 | 8.3:+9259228 | None:intergenic |
TTGTATTATGCAGATTGACG+TGG | 0.600471 | 8.3:-9251652 | MS.gene57715:intron |
AACCAAACACCTAGGATGCA+GGG | 0.602158 | 8.3:+9255643 | None:intergenic |
ATACATGGTTCTTTGCGCAA+AGG | 0.602393 | 8.3:-9256271 | MS.gene57715:CDS |
ATATTTGCAGGCAAAAGAAG+AGG | 0.604425 | 8.3:-9250585 | MS.gene57715:intron |
TGGCCCCACACTAATGGTGG+AGG | 0.605263 | 8.3:-9265338 | MS.gene57715:CDS |
ACTTATTCCAAGTATAGTTG+AGG | 0.606270 | 8.3:-9252451 | MS.gene57715:intron |
TGTGCAGAAACCGATTAGGA+AGG | 0.609190 | 8.3:-9265368 | MS.gene57715:intron |
ATGATCCTAAGTATCTATCC+CGG | 0.609265 | 8.3:-9260482 | MS.gene57715:intron |
AGAGTGAGGCGGTATGCCCA+CGG | 0.609484 | 8.3:-9263112 | MS.gene57715:CDS |
TAGTAGAACATACAATGGCA+GGG | 0.609987 | 8.3:+9265878 | None:intergenic |
AAGGCCCGGAGACATTGTTA+CGG | 0.613876 | 8.3:-9262762 | MS.gene57715:CDS |
TCGTCATCGGATGAAGAAAG+TGG | 0.615182 | 8.3:-9258551 | MS.gene57715:CDS |
AGAACACCTTAAACCTCCAA+TGG | 0.617374 | 8.3:+9250497 | None:intergenic |
GCTACAGCTGGGGAAGCCCG+GGG | 0.621557 | 8.3:-9263941 | MS.gene57715:CDS |
ATTGCCGTAACAATGTCTCC+GGG | 0.622454 | 8.3:+9262758 | None:intergenic |
AAGGACATCGGCCTAGAGTG+AGG | 0.622481 | 8.3:-9263126 | MS.gene57715:CDS |
GGATCAATCTTGAAGGACAT+CGG | 0.623320 | 8.3:-9263138 | MS.gene57715:CDS |
TCTGAATTTCAGTCAGAAGT+CGG | 0.623960 | 8.3:-9253244 | MS.gene57715:intron |
GGTGTCCTTGCAAAATCTGT+CGG | 0.624906 | 8.3:-9261009 | MS.gene57715:CDS |
GTGCAGAAACCGATTAGGAA+GGG | 0.625948 | 8.3:-9265367 | MS.gene57715:intron |
AGAATGTATCTCCAAAGTGT+GGG | 0.625962 | 8.3:+9259194 | None:intergenic |
GGATCATCCTCTGTAGCTAG+AGG | 0.630431 | 8.3:-9251624 | MS.gene57715:CDS |
TGTTGGCCCCACACTAATGG+TGG | 0.633247 | 8.3:-9265341 | MS.gene57715:CDS |
CAAATCGGGTAGCAAAGGAT+CGG | 0.634849 | 8.3:-9266028 | MS.gene57715:CDS |
GCTCCTCCACCATTAGTGTG+GGG | 0.635931 | 8.3:+9265335 | None:intergenic |
ACTGCTATGAGCTTAAGAAG+AGG | 0.638290 | 8.3:+9255704 | None:intergenic |
GGTCGCCGAAAAGTCAACGA+TGG | 0.641439 | 8.3:-9265310 | MS.gene57715:CDS |
GAGTATGAATTGTCAAGTGG+TGG | 0.645004 | 8.3:-9263647 | MS.gene57715:CDS |
GATTGCTTGTGCTACAGCTG+GGG | 0.647664 | 8.3:-9263951 | MS.gene57715:CDS |
AATGACACCTCTAGCTACAG+AGG | 0.648340 | 8.3:+9251617 | None:intergenic |
AATTGTTGGACTTCTCCTAG+TGG | 0.657811 | 8.3:-9256229 | MS.gene57715:CDS |
GTTACCTGAACCAAACACCT+AGG | 0.659309 | 8.3:+9255635 | None:intergenic |
GCCGAGTATGAATTGTCAAG+TGG | 0.660670 | 8.3:-9263650 | MS.gene57715:CDS |
TTTGGAGTGAACTATTGTGG+TGG | 0.668425 | 8.3:+9258655 | None:intergenic |
TTGTAACATATCCTAGCACA+AGG | 0.670543 | 8.3:+9251592 | None:intergenic |
TAGGCCAGACAGGTTTGAAG+GGG | 0.671925 | 8.3:-9262719 | MS.gene57715:CDS |
AAACCTCTATCAAAATGGCA+AGG | 0.680546 | 8.3:+9251556 | None:intergenic |
TTACACATTACTGTGCCTAG+TGG | 0.689398 | 8.3:-9259115 | MS.gene57715:CDS |
TATGTCGTTTGGATGGATTG+TGG | 0.689644 | 8.3:+9256291 | None:intergenic |
ATACCTGCAGATTAACGACA+AGG | 0.700529 | 8.3:+9253203 | None:intergenic |
TCTGGCTGTAGCATCTACAT+GGG | 0.707860 | 8.3:-9259271 | MS.gene57715:intron |
GACATCGGCCTAGAGTGAGG+CGG | 0.708878 | 8.3:-9263123 | MS.gene57715:CDS |
ATGGAAATGTGTCCATACTG+TGG | 0.733893 | 8.3:-9262668 | MS.gene57715:CDS |
TCGCCGAAAAGTCAACGATG+GGG | 0.736973 | 8.3:-9265308 | MS.gene57715:intron |
CAGAGACAGACTAAACATGG+AGG | 0.757709 | 8.3:-9263618 | MS.gene57715:CDS |
ATTGTGGTAGGAGTGACCCG+AGG | 0.777433 | 8.3:+9256307 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 9250505 | 9266091 | 9250505 | ID=MS.gene57715 |
chr8.3 | mRNA | 9250505 | 9266091 | 9250505 | ID=MS.gene57715.t1;Parent=MS.gene57715 |
chr8.3 | exon | 9265891 | 9266091 | 9265891 | ID=MS.gene57715.t1.exon1;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9265891 | 9266091 | 9265891 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9265309 | 9265383 | 9265309 | ID=MS.gene57715.t1.exon2;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9265309 | 9265383 | 9265309 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9265069 | 9265122 | 9265069 | ID=MS.gene57715.t1.exon3;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9265069 | 9265122 | 9265069 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9263907 | 9263972 | 9263907 | ID=MS.gene57715.t1.exon4;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9263907 | 9263972 | 9263907 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9263614 | 9263672 | 9263614 | ID=MS.gene57715.t1.exon5;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9263614 | 9263672 | 9263614 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9263083 | 9263159 | 9263083 | ID=MS.gene57715.t1.exon6;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9263083 | 9263159 | 9263083 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9262665 | 9262781 | 9262665 | ID=MS.gene57715.t1.exon7;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9262665 | 9262781 | 9262665 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9261804 | 9261838 | 9261804 | ID=MS.gene57715.t1.exon8;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9261804 | 9261838 | 9261804 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9260940 | 9261040 | 9260940 | ID=MS.gene57715.t1.exon9;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9260940 | 9261040 | 9260940 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9260483 | 9260578 | 9260483 | ID=MS.gene57715.t1.exon10;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9260483 | 9260578 | 9260483 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9259990 | 9260054 | 9259990 | ID=MS.gene57715.t1.exon11;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9259990 | 9260054 | 9259990 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9259472 | 9259543 | 9259472 | ID=MS.gene57715.t1.exon12;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9259472 | 9259543 | 9259472 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9259112 | 9259282 | 9259112 | ID=MS.gene57715.t1.exon13;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9259112 | 9259282 | 9259112 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9258526 | 9258725 | 9258526 | ID=MS.gene57715.t1.exon14;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9258526 | 9258725 | 9258526 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9258323 | 9258389 | 9258323 | ID=MS.gene57715.t1.exon15;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9258323 | 9258389 | 9258323 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9256180 | 9256355 | 9256180 | ID=MS.gene57715.t1.exon16;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9256180 | 9256355 | 9256180 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9255640 | 9255741 | 9255640 | ID=MS.gene57715.t1.exon17;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9255640 | 9255741 | 9255640 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9253207 | 9253254 | 9253207 | ID=MS.gene57715.t1.exon18;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9253207 | 9253254 | 9253207 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9252452 | 9252595 | 9252452 | ID=MS.gene57715.t1.exon19;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9252452 | 9252595 | 9252452 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9252268 | 9252363 | 9252268 | ID=MS.gene57715.t1.exon20;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9252268 | 9252363 | 9252268 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9251560 | 9251661 | 9251560 | ID=MS.gene57715.t1.exon21;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9251560 | 9251661 | 9251560 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
chr8.3 | exon | 9250505 | 9250597 | 9250505 | ID=MS.gene57715.t1.exon22;Parent=MS.gene57715.t1 |
chr8.3 | CDS | 9250505 | 9250597 | 9250505 | ID=cds.MS.gene57715.t1;Parent=MS.gene57715.t1 |
Gene Sequence |
Protein sequence |