Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57744.t1 | XP_024636653.1 | 99 | 203 | 2 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57744.t1 | Q1RMX9 | 35.4 | 144 | 90 | 3 | 50 | 193 | 62 | 202 | 1.8e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57744.t1 | A0A072V218 | 99.0 | 196 | 2 | 0 | 1 | 196 | 1 | 196 | 3.5e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056403 | MS.gene57744 | 0.814644 | 1.39E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene57744 | 0.828077 | 1.10E-54 | -1.69E-46 |
| MS.gene060830 | MS.gene57744 | 0.818372 | 2.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57744.t1 | MTR_4g116980 | 98.980 | 196 | 2 | 0 | 1 | 196 | 1 | 196 | 1.38e-146 | 407 |
| MS.gene57744.t1 | MTR_4g008540 | 62.573 | 171 | 64 | 0 | 26 | 196 | 26 | 196 | 7.51e-80 | 238 |
| MS.gene57744.t1 | MTR_2g064415 | 29.375 | 160 | 111 | 2 | 36 | 195 | 58 | 215 | 3.12e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57744.t1 | AT1G15860 | 60.234 | 171 | 68 | 0 | 26 | 196 | 26 | 196 | 5.19e-75 | 226 |
| MS.gene57744.t1 | AT1G15860 | 60.234 | 171 | 68 | 0 | 26 | 196 | 26 | 196 | 5.19e-75 | 226 |
| MS.gene57744.t1 | AT1G15860 | 57.222 | 180 | 68 | 1 | 26 | 196 | 26 | 205 | 7.82e-72 | 218 |
| MS.gene57744.t1 | AT3G12760 | 26.506 | 166 | 120 | 2 | 28 | 193 | 51 | 214 | 8.56e-20 | 84.7 |
Find 44 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGTGTACTATTGTTC+TGG | 0.261877 | 8.3:-9147505 | MS.gene57744:CDS |
| CGAAGAGGTCTCAAATGTTT+AGG | 0.271622 | 8.3:-9147941 | MS.gene57744:CDS |
| TCTTAAACAGTCCTTATATA+TGG | 0.274026 | 8.3:+9146634 | None:intergenic |
| TTAGCGCTCTGTATTCATTC+TGG | 0.293347 | 8.3:+9147016 | None:intergenic |
| AAACTTAAGTCCCATATATA+AGG | 0.343017 | 8.3:-9146645 | None:intergenic |
| GAAGAGGTCTCAAATGTTTA+GGG | 0.370024 | 8.3:-9147940 | MS.gene57744:CDS |
| CAAAGTGCTTCAATCCCATC+TGG | 0.375256 | 8.3:+9149172 | None:intergenic |
| TCCTCGCTCCAAACGAAAAC+CGG | 0.388522 | 8.3:-9149928 | MS.gene57744:CDS |
| GTAGTTGTTCTCTTCGTCTT+CGG | 0.413741 | 8.3:+9149660 | None:intergenic |
| ATTGACTTGAGAAGGGAATT+CGG | 0.422632 | 8.3:+9147479 | None:intergenic |
| GTTTGGTTGGTCAGCCCAGA+TGG | 0.424353 | 8.3:-9149187 | MS.gene57744:intron |
| CTTTCTTTGAATAGGATGAA+TGG | 0.426861 | 8.3:-9147964 | MS.gene57744:intron |
| GTTAATAAATTGACTTGAGA+AGG | 0.457330 | 8.3:+9147471 | None:intergenic |
| AGCATACACAAATAAATCAT+TGG | 0.458640 | 8.3:-9149604 | MS.gene57744:CDS |
| ACGTCAGTGGTTGGTGGGAC+CGG | 0.458694 | 8.3:+9149909 | None:intergenic |
| GAAAATGAATGCTGAAAAGC+AGG | 0.462030 | 8.3:-9149007 | MS.gene57744:CDS |
| CTTAAACAGTCCTTATATAT+GGG | 0.474356 | 8.3:+9146635 | None:intergenic |
| GAGCTGTGTACTATTGTTCT+GGG | 0.478973 | 8.3:-9147504 | MS.gene57744:CDS |
| AATAGTACACAGCTCACATA+TGG | 0.491701 | 8.3:+9147512 | None:intergenic |
| ATGTGGACCATACAGATGTT+AGG | 0.497304 | 8.3:-9149138 | MS.gene57744:CDS |
| GCATTCAAATATTGCCTCAC+AGG | 0.503317 | 8.3:-9147697 | MS.gene57744:intron |
| TTTATTAACAGAGTATCTAA+AGG | 0.509114 | 8.3:-9147457 | MS.gene57744:intron |
| TTTGGTTGGTCAGCCCAGAT+GGG | 0.527896 | 8.3:-9149186 | MS.gene57744:intron |
| TCAGCATCCTAACATCTGTA+TGG | 0.536665 | 8.3:+9149131 | None:intergenic |
| TGAAGAAGTACCGGTACGAA+TGG | 0.538292 | 8.3:+9149878 | None:intergenic |
| TTAATAAATTGACTTGAGAA+GGG | 0.545327 | 8.3:+9147472 | None:intergenic |
| GAGCGCTAACAATGGATCAC+TGG | 0.566518 | 8.3:-9147002 | MS.gene57744:CDS |
| TTAGGATGCTGATACTTGCT+TGG | 0.574546 | 8.3:-9149120 | MS.gene57744:intron |
| AATCGACGTCAGTGGTTGGT+GGG | 0.579588 | 8.3:+9149904 | None:intergenic |
| AATGAATGGACTGAAGAAAG+AGG | 0.588217 | 8.3:-9147888 | MS.gene57744:intron |
| GTCGATTCTTCCATTCGTAC+CGG | 0.588803 | 8.3:-9149888 | MS.gene57744:intron |
| GAAGAATCGACGTCAGTGGT+TGG | 0.593053 | 8.3:+9149900 | None:intergenic |
| TGAATACAGAGCGCTAACAA+TGG | 0.593788 | 8.3:-9147010 | MS.gene57744:CDS |
| AATGGAAGAATCGACGTCAG+TGG | 0.616260 | 8.3:+9149896 | None:intergenic |
| AAAGTGCTTCAATCCCATCT+GGG | 0.617158 | 8.3:+9149173 | None:intergenic |
| TACTTTCAGAGGATAAGCAA+AGG | 0.624973 | 8.3:-9147551 | MS.gene57744:intron |
| GAATCGACGTCAGTGGTTGG+TGG | 0.627655 | 8.3:+9149903 | None:intergenic |
| CAACTACAAAGCAATTTGAA+CGG | 0.631232 | 8.3:-9149644 | MS.gene57744:CDS |
| GAATAGGATGAATGGCGAAG+AGG | 0.658803 | 8.3:-9147956 | MS.gene57744:intron |
| AAAATGAATGCTGAAAAGCA+GGG | 0.662496 | 8.3:-9149006 | MS.gene57744:CDS |
| GAGGCAATATTTGAATGCAT+AGG | 0.663309 | 8.3:+9147702 | None:intergenic |
| GAAGACTAAGCTTACCTGTG+AGG | 0.669251 | 8.3:+9147683 | None:intergenic |
| AAGAGGTCTCAAATGTTTAG+GGG | 0.690794 | 8.3:-9147939 | MS.gene57744:CDS |
| ACTTTGTAAAGATGTGAATG+TGG | 0.741891 | 8.3:-9149155 | MS.gene57744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAATTTTAATTTAT+TGG | - | chr8.3:9146797-9146816 | MS.gene57744:intron | 0.0% |
| !! | TAGAAAATAATTTATGAATA+CGG | + | chr8.3:9149521-9149540 | None:intergenic | 10.0% |
| !!! | ATTCATAAATTATTTTCTAA+TGG | - | chr8.3:9149522-9149541 | MS.gene57744:intron | 10.0% |
| !!! | TCATTTTTTGAATTTTTTAT+CGG | - | chr8.3:9147261-9147280 | MS.gene57744:intron | 10.0% |
| !! | AAATTAAAAAAAGCAATGAA+TGG | - | chr8.3:9148678-9148697 | MS.gene57744:intron | 15.0% |
| !!! | CAATTTATTTCCTTTTTTTT+TGG | - | chr8.3:9148811-9148830 | MS.gene57744:intron | 15.0% |
| !!! | TCATTGCTTTTTTTAATTTT+GGG | + | chr8.3:9148677-9148696 | None:intergenic | 15.0% |
| !!! | TTCATTGCTTTTTTTAATTT+TGG | + | chr8.3:9148678-9148697 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTGTATGTAATTT+GGG | - | chr8.3:9149219-9149238 | MS.gene57744:intron | 15.0% |
| !! | AAATTCACAAATCATAAGAA+TGG | + | chr8.3:9149851-9149870 | None:intergenic | 20.0% |
| !! | CTTAAAATATTGAGATATTC+AGG | - | chr8.3:9147648-9147667 | MS.gene57744:intron | 20.0% |
| !! | TTGAGATTAGCAATTATTTA+CGG | - | chr8.3:9148765-9148784 | MS.gene57744:intron | 20.0% |
| !!! | AATGCTTTATACTTTTTGTT+TGG | - | chr8.3:9147376-9147395 | MS.gene57744:intron | 20.0% |
| !!! | CTTTTAAGTTGTATGTAATT+TGG | - | chr8.3:9149218-9149237 | MS.gene57744:intron | 20.0% |
| !!! | TATACAAAGTACTGTTAAAT+AGG | - | chr8.3:9148058-9148077 | MS.gene57744:intron | 20.0% |
| !!! | TGTGTTTGGATTATTTTTTA+TGG | - | chr8.3:9147322-9147341 | MS.gene57744:intron | 20.0% |
| !!! | TTAATAAATTGACTTGAGAA+GGG | + | chr8.3:9149111-9149130 | None:intergenic | 20.0% |
| !!! | TTCATAAGTATTTTATAGCT+GGG | + | chr8.3:9148729-9148748 | None:intergenic | 20.0% |
| !!! | TTCTAATGATAAAAAGTACA+AGG | + | chr8.3:9149783-9149802 | None:intergenic | 20.0% |
| !!! | TTTATTAACAGAGTATCTAA+AGG | - | chr8.3:9149123-9149142 | MS.gene57744:CDS | 20.0% |
| !!! | TTTTTATCGGTTTTTTAAAG+AGG | - | chr8.3:9149606-9149625 | MS.gene57744:CDS | 20.0% |
| !!! | TTTTTCCTAATAGATGAAAA+AGG | + | chr8.3:9149918-9149937 | None:intergenic | 20.0% |
| ! | AAAAAAATTTCTACCAACCT+TGG | + | chr8.3:9147608-9147627 | None:intergenic | 25.0% |
| ! | AAAGAGAAGAGTTAACAATA+CGG | - | chr8.3:9148398-9148417 | MS.gene57744:intron | 25.0% |
| ! | AATTGCATCAAAACCTTATT+AGG | + | chr8.3:9148796-9148815 | None:intergenic | 25.0% |
| ! | AGAATCAATCTAAGTGAAAT+AGG | - | chr8.3:9148280-9148299 | MS.gene57744:intron | 25.0% |
| ! | AGCATACACAAATAAATCAT+TGG | - | chr8.3:9146976-9146995 | MS.gene57744:CDS | 25.0% |
| ! | AGTTGAAAACAAAATGTACT+AGG | + | chr8.3:9149884-9149903 | None:intergenic | 25.0% |
| ! | ATCAGATAAAAACTCAAGAA+AGG | + | chr8.3:9149657-9149676 | None:intergenic | 25.0% |
| ! | ATTGCATCAAAACCTTATTA+GGG | + | chr8.3:9148795-9148814 | None:intergenic | 25.0% |
| ! | CACTAAATTCACAAATCATA+AGG | + | chr8.3:9149754-9149773 | None:intergenic | 25.0% |
| ! | CTGAATAAACTATTATTAGC+TGG | + | chr8.3:9148116-9148135 | None:intergenic | 25.0% |
| ! | CTTTCTTTCTTTCTTTGAAT+AGG | - | chr8.3:9148608-9148627 | MS.gene57744:intron | 25.0% |
| ! | TAAAAATCCTCAAAACTTTC+TGG | + | chr8.3:9148856-9148875 | None:intergenic | 25.0% |
| ! | TAATTTATGTCTTTCTTACC+AGG | - | chr8.3:9147551-9147570 | MS.gene57744:intron | 25.0% |
| ! | TCAAGTATCAACAGTATAAA+TGG | + | chr8.3:9148501-9148520 | None:intergenic | 25.0% |
| ! | TCAGATAAAAACTCAAGAAA+GGG | + | chr8.3:9149656-9149675 | None:intergenic | 25.0% |
| ! | TTACAACGAAAAATATTTCC+AGG | + | chr8.3:9149398-9149417 | None:intergenic | 25.0% |
| ! | TTATTAGTTGTTGTATGATC+TGG | - | chr8.3:9147149-9147168 | MS.gene57744:intron | 25.0% |
| ! | TTCAGTGAAAAGTTATTCAA+TGG | - | chr8.3:9148131-9148150 | MS.gene57744:intron | 25.0% |
| !! | AAAACGTACTTCAGTTTTTA+GGG | + | chr8.3:9148368-9148387 | None:intergenic | 25.0% |
| !! | AGAAAAATCTTTTCTATCAC+TGG | + | chr8.3:9149438-9149457 | None:intergenic | 25.0% |
| !! | ATCACTGGAGAAATTTTTAT+CGG | - | chr8.3:9149593-9149612 | MS.gene57744:intron | 25.0% |
| !! | CTTCATAAGTATTTTATAGC+TGG | + | chr8.3:9148730-9148749 | None:intergenic | 25.0% |
| !! | TAAACTGATGATGATATGAA+TGG | + | chr8.3:9148528-9148547 | None:intergenic | 25.0% |
| !!! | ACTCTAAAGTTATGTTGTTT+GGG | - | chr8.3:9149465-9149484 | MS.gene57744:intron | 25.0% |
| !!! | AGTATAAATGGATTGTAGTT+TGG | + | chr8.3:9148489-9148508 | None:intergenic | 25.0% |
| !!! | ATGAAGTTTTGTTTATTTCG+TGG | - | chr8.3:9149348-9149367 | MS.gene57744:intron | 25.0% |
| !!! | ATTTCCTTTTTTTTTGGTCT+TGG | - | chr8.3:9148817-9148836 | MS.gene57744:intron | 25.0% |
| !!! | CTTTATACTTTTTGTTTGGT+TGG | - | chr8.3:9147380-9147399 | MS.gene57744:intron | 25.0% |
| !!! | GTTAATAAATTGACTTGAGA+AGG | + | chr8.3:9149112-9149131 | None:intergenic | 25.0% |
| !!! | GTTTACCTTTTTCATCTATT+AGG | - | chr8.3:9149910-9149929 | MS.gene57744:CDS | 25.0% |
| !!! | TTCTAATGGTTGTTTTTTCT+TGG | - | chr8.3:9149536-9149555 | MS.gene57744:intron | 25.0% |
| !!! | TTTCCTTTTTTTTTGGTCTT+GGG | - | chr8.3:9148818-9148837 | MS.gene57744:intron | 25.0% |
| AAAATGAATGCTGAAAAGCA+GGG | - | chr8.3:9147574-9147593 | MS.gene57744:intron | 30.0% | |
| AATCAAGTAATACTACGAGA+AGG | + | chr8.3:9148565-9148584 | None:intergenic | 30.0% | |
| ACATTCTTCACAATCTAACA+TGG | + | chr8.3:9149274-9149293 | None:intergenic | 30.0% | |
| ACTGTTAAATCGTAATACAC+TGG | - | chr8.3:9148312-9148331 | MS.gene57744:intron | 30.0% | |
| ACTTTGTAAAGATGTGAATG+TGG | - | chr8.3:9147425-9147444 | MS.gene57744:intron | 30.0% | |
| CAACTACAAAGCAATTTGAA+CGG | - | chr8.3:9146936-9146955 | MS.gene57744:intron | 30.0% | |
| CTTTCTTTGAATAGGATGAA+TGG | - | chr8.3:9148616-9148635 | MS.gene57744:intron | 30.0% | |
| GTAGCATAAAGTAACAACTT+AGG | + | chr8.3:9149181-9149200 | None:intergenic | 30.0% | |
| TGACAGTTGAACAATAACAA+TGG | - | chr8.3:9147971-9147990 | MS.gene57744:intron | 30.0% | |
| TGATGAATTTCTGATTCCAA+TGG | + | chr8.3:9149686-9149705 | None:intergenic | 30.0% | |
| TGGTGAAGAAAAAATCATCA+AGG | + | chr8.3:9148980-9148999 | None:intergenic | 30.0% | |
| TTCAAATTCTGCTATGCTAA+AGG | + | chr8.3:9147832-9147851 | None:intergenic | 30.0% | |
| TTCAATTTCTCCTTTCTCAT+TGG | - | chr8.3:9146721-9146740 | MS.gene57744:intron | 30.0% | |
| ! | AAGTATTTTATAGCTGGGAA+AGG | + | chr8.3:9148724-9148743 | None:intergenic | 30.0% |
| ! | ACACTGATTAATACTTTCAG+AGG | - | chr8.3:9149018-9149037 | MS.gene57744:intron | 30.0% |
| ! | CTTGAGTTTTTATCTGATTG+AGG | - | chr8.3:9149659-9149678 | MS.gene57744:CDS | 30.0% |
| ! | GAAAACGTACTTCAGTTTTT+AGG | + | chr8.3:9148369-9148388 | None:intergenic | 30.0% |
| ! | TAGCTATACAGTGAAACTTT+TGG | - | chr8.3:9148425-9148444 | MS.gene57744:intron | 30.0% |
| ! | TGTTAACTCTTCTCTTTTTG+AGG | + | chr8.3:9148395-9148414 | None:intergenic | 30.0% |
| ! | TGTTTTGTGACTCGTAAAAA+CGG | + | chr8.3:9146751-9146770 | None:intergenic | 30.0% |
| ! | TTTTCAACTGTAATTCAGAC+TGG | - | chr8.3:9148930-9148949 | MS.gene57744:intron | 30.0% |
| !! | CACTCTAAAGTTATGTTGTT+TGG | - | chr8.3:9149464-9149483 | MS.gene57744:intron | 30.0% |
| !!! | TTTTAATTTTGGGAGTGTGT+CGG | + | chr8.3:9148667-9148686 | None:intergenic | 30.0% |
| AAGAGGTCTCAAATGTTTAG+GGG | - | chr8.3:9148641-9148660 | MS.gene57744:intron | 35.0% | |
| AATAGTACACAGCTCACATA+TGG | + | chr8.3:9149071-9149090 | None:intergenic | 35.0% | |
| ATAAGATGACCACACATAAC+AGG | + | chr8.3:9149724-9149743 | None:intergenic | 35.0% | |
| ATTCACAAATCATAAGGCTG+TGG | + | chr8.3:9149748-9149767 | None:intergenic | 35.0% | |
| ATTTACGGATGTCCCTAATA+AGG | - | chr8.3:9148780-9148799 | MS.gene57744:intron | 35.0% | |
| CAAATAGCACTACCCTATAA+CGG | + | chr8.3:9147737-9147756 | None:intergenic | 35.0% | |
| CTACCCAAGACCAAAAAAAA+AGG | + | chr8.3:9148824-9148843 | None:intergenic | 35.0% | |
| GAAAATGAATGCTGAAAAGC+AGG | - | chr8.3:9147573-9147592 | MS.gene57744:intron | 35.0% | |
| GAAGAGGTCTCAAATGTTTA+GGG | - | chr8.3:9148640-9148659 | MS.gene57744:intron | 35.0% | |
| GAGGCAATATTTGAATGCAT+AGG | + | chr8.3:9148881-9148900 | None:intergenic | 35.0% | |
| GCGGAGAAAAGATTAAGAAA+AGG | + | chr8.3:9148346-9148365 | None:intergenic | 35.0% | |
| GTTCAAACAGATTCACAAAG+TGG | + | chr8.3:9149000-9149019 | None:intergenic | 35.0% | |
| TACTTTCAGAGGATAAGCAA+AGG | - | chr8.3:9149029-9149048 | MS.gene57744:intron | 35.0% | |
| TGTCCCATGGAAAAAAAAGT+GGG | + | chr8.3:9147691-9147710 | None:intergenic | 35.0% | |
| TTTATCTGATTGAGGTCCAT+TGG | - | chr8.3:9149667-9149686 | MS.gene57744:intron | 35.0% | |
| ! | AGGAGAAATTGAAGAAGTAC+CGG | + | chr8.3:9146714-9146733 | None:intergenic | 35.0% |
| ! | ATACAAAGTTGGTTACATCC+TGG | - | chr8.3:9149377-9149396 | MS.gene57744:intron | 35.0% |
| ! | ATGGATTGTAGTTTGGATCA+TGG | + | chr8.3:9148482-9148501 | None:intergenic | 35.0% |
| ! | CAACACTGTCATGTTTGTTA+TGG | - | chr8.3:9147876-9147895 | MS.gene57744:intron | 35.0% |
| ! | CTAAAGTTATGTTGTTTGGG+TGG | - | chr8.3:9149468-9149487 | MS.gene57744:intron | 35.0% |
| ! | CTTTTCAGCATTCATTTTCC+TGG | + | chr8.3:9147572-9147591 | None:intergenic | 35.0% |
| !! | AAAGCAGGGTTATTTTACCA+AGG | - | chr8.3:9147588-9147607 | MS.gene57744:intron | 35.0% |
| !! | AATGAATGGACTGAAGAAAG+AGG | - | chr8.3:9148692-9148711 | MS.gene57744:intron | 35.0% |
| !! | ATTGACTTGAGAAGGGAATT+CGG | + | chr8.3:9149104-9149123 | None:intergenic | 35.0% |
| !!! | ATTCCCCACTTTTTTTTCCA+TGG | - | chr8.3:9147684-9147703 | MS.gene57744:intron | 35.0% |
| !!! | CTTTTTTTTTGGTCTTGGGT+AGG | - | chr8.3:9148822-9148841 | MS.gene57744:intron | 35.0% |
| !!! | TTCCCCACTTTTTTTTCCAT+GGG | - | chr8.3:9147685-9147704 | MS.gene57744:intron | 35.0% |
| AAACGGAGAACCAATGAGAA+AGG | + | chr8.3:9146734-9146753 | None:intergenic | 40.0% | |
| ACAATCTAACATGGTTGTGC+TGG | + | chr8.3:9149265-9149284 | None:intergenic | 40.0% | |
| ACAGAGAAGCCTATTATGTG+TGG | - | chr8.3:9149815-9149834 | MS.gene57744:intron | 40.0% | |
| ACTATGACACTTCTGATGGA+AGG | - | chr8.3:9147196-9147215 | MS.gene57744:intron | 40.0% | |
| AGAAGCCTATTATGTGTGGT+CGG | - | chr8.3:9149819-9149838 | MS.gene57744:intron | 40.0% | |
| AGACATCAACCTGTTATGTG+TGG | - | chr8.3:9149712-9149731 | MS.gene57744:intron | 40.0% | |
| AGTCACTATGACACTTCTGA+TGG | - | chr8.3:9147192-9147211 | MS.gene57744:intron | 40.0% | |
| ATAAGCCGACCACACATAAT+AGG | + | chr8.3:9149827-9149846 | None:intergenic | 40.0% | |
| ATGTGGACCATACAGATGTT+AGG | - | chr8.3:9147442-9147461 | MS.gene57744:intron | 40.0% | |
| ATTAGCTGGATTCAGTGTTC+AGG | + | chr8.3:9148102-9148121 | None:intergenic | 40.0% | |
| CGAAGAGGTCTCAAATGTTT+AGG | - | chr8.3:9148639-9148658 | MS.gene57744:intron | 40.0% | |
| CGTGGTTCATGATACAAAGT+TGG | - | chr8.3:9149366-9149385 | MS.gene57744:intron | 40.0% | |
| GAGCTGTGTACTATTGTTCT+GGG | - | chr8.3:9149076-9149095 | MS.gene57744:intron | 40.0% | |
| GCATTCAAATATTGCCTCAC+AGG | - | chr8.3:9148883-9148902 | MS.gene57744:intron | 40.0% | |
| GTAGTTGTTCTCTTCGTCTT+CGG | + | chr8.3:9146923-9146942 | None:intergenic | 40.0% | |
| GTCCCATGGAAAAAAAAGTG+GGG | + | chr8.3:9147690-9147709 | None:intergenic | 40.0% | |
| GTGTCCCATGGAAAAAAAAG+TGG | + | chr8.3:9147692-9147711 | None:intergenic | 40.0% | |
| TCAGCATCCTAACATCTGTA+TGG | + | chr8.3:9147452-9147471 | None:intergenic | 40.0% | |
| TCGTTGGAAGTTACTGTGTT+TGG | - | chr8.3:9147308-9147327 | MS.gene57744:intron | 40.0% | |
| TGAGCTGTGTACTATTGTTC+TGG | - | chr8.3:9149075-9149094 | MS.gene57744:intron | 40.0% | |
| TTAGCGCTCTGTATTCATTC+TGG | + | chr8.3:9149567-9149586 | None:intergenic | 40.0% | |
| TTAGGATGCTGATACTTGCT+TGG | - | chr8.3:9147460-9147479 | MS.gene57744:CDS | 40.0% | |
| TTGCTTGGTACATATCTGAC+TGG | - | chr8.3:9147475-9147494 | MS.gene57744:CDS | 40.0% | |
| ! | AAAGTGCTTCAATCCCATCT+GGG | + | chr8.3:9147410-9147429 | None:intergenic | 40.0% |
| ! | ACAGGTAAGCTTAGTCTTCT+CGG | - | chr8.3:9148901-9148920 | MS.gene57744:intron | 40.0% |
| ! | CAGAGTATCTAAAGGTGAGT+AGG | - | chr8.3:9149131-9149150 | MS.gene57744:CDS | 40.0% |
| ! | GATGGTTCCAGAAAGTTTTG+AGG | - | chr8.3:9148846-9148865 | MS.gene57744:intron | 40.0% |
| ! | TGAATACAGAGCGCTAACAA+TGG | - | chr8.3:9149570-9149589 | MS.gene57744:intron | 40.0% |
| !! | ACGTACTTCAGTTTTTAGGG+CGG | + | chr8.3:9148365-9148384 | None:intergenic | 40.0% |
| !! | AGAGTGATTTTGACATGCAG+TGG | - | chr8.3:9148158-9148177 | MS.gene57744:intron | 40.0% |
| !! | CAGGGTTATTTTACCAAGGT+TGG | - | chr8.3:9147592-9147611 | MS.gene57744:intron | 40.0% |
| AATGGAAGAATCGACGTCAG+TGG | + | chr8.3:9146687-9146706 | None:intergenic | 45.0% | |
| CAAAACTTCATGCGTACGAC+TGG | + | chr8.3:9149339-9149358 | None:intergenic | 45.0% | |
| CAATATGCATGTGTGTCCCA+TGG | + | chr8.3:9147704-9147723 | None:intergenic | 45.0% | |
| GAAGACTAAGCTTACCTGTG+AGG | + | chr8.3:9148900-9148919 | None:intergenic | 45.0% | |
| GAATAGGATGAATGGCGAAG+AGG | - | chr8.3:9148624-9148643 | MS.gene57744:intron | 45.0% | |
| GCAATGACATGTGTCAGTGA+CGG | + | chr8.3:9147230-9147249 | None:intergenic | 45.0% | |
| TGGGACACACATGCATATTG+TGG | - | chr8.3:9147704-9147723 | MS.gene57744:CDS | 45.0% | |
| TGTCAGTGTCTGTGTTTCGT+TGG | - | chr8.3:9147292-9147311 | MS.gene57744:intron | 45.0% | |
| ! | CAAAGTGCTTCAATCCCATC+TGG | + | chr8.3:9147411-9147430 | None:intergenic | 45.0% |
| ! | CAGGTAAGCTTAGTCTTCTC+GGG | - | chr8.3:9148902-9148921 | MS.gene57744:intron | 45.0% |
| ! | GTCGATTCTTCCATTCGTAC+CGG | - | chr8.3:9146692-9146711 | MS.gene57744:intron | 45.0% |
| ! | GTGTGAAAGCACAAGACTGT+TGG | - | chr8.3:9148453-9148472 | MS.gene57744:intron | 45.0% |
| !! | TGAAGAAGTACCGGTACGAA+TGG | + | chr8.3:9146705-9146724 | None:intergenic | 45.0% |
| !!! | TTTTGGTCTTGGGTAGGTGA+TGG | - | chr8.3:9148828-9148847 | MS.gene57744:intron | 45.0% |
| AATCGACGTCAGTGGTTGGT+GGG | + | chr8.3:9146679-9146698 | None:intergenic | 50.0% | |
| AATTGAACCTCCCCTCGTCT+TGG | + | chr8.3:9148221-9148240 | None:intergenic | 50.0% | |
| ATGTGTGAGTCCAAGACGAG+GGG | - | chr8.3:9148208-9148227 | MS.gene57744:intron | 50.0% | |
| CATGTGTGAGTCCAAGACGA+GGG | - | chr8.3:9148207-9148226 | MS.gene57744:intron | 50.0% | |
| GAAGAATCGACGTCAGTGGT+TGG | + | chr8.3:9146683-9146702 | None:intergenic | 50.0% | |
| GAGCGCTAACAATGGATCAC+TGG | - | chr8.3:9149578-9149597 | MS.gene57744:intron | 50.0% | |
| TCCTCGCTCCAAACGAAAAC+CGG | - | chr8.3:9146652-9146671 | MS.gene57744:intron | 50.0% | |
| TGTGGCGCTATGCCGTTATA+GGG | - | chr8.3:9147722-9147741 | MS.gene57744:CDS | 50.0% | |
| TTGTGGCGCTATGCCGTTAT+AGG | - | chr8.3:9147721-9147740 | MS.gene57744:CDS | 50.0% | |
| ! | CGTACGACTGGCTACAAGTA+TGG | + | chr8.3:9149327-9149346 | None:intergenic | 50.0% |
| ! | TTTGGTTGGTCAGCCCAGAT+GGG | - | chr8.3:9147394-9147413 | MS.gene57744:intron | 50.0% |
| GAATCGACGTCAGTGGTTGG+TGG | + | chr8.3:9146680-9146699 | None:intergenic | 55.0% | |
| GCATGTGTGAGTCCAAGACG+AGG | - | chr8.3:9148206-9148225 | MS.gene57744:intron | 55.0% | |
| ! | GTTTGGTTGGTCAGCCCAGA+TGG | - | chr8.3:9147393-9147412 | MS.gene57744:intron | 55.0% |
| !! | ACCGGTTTTCGTTTGGAGCG+AGG | + | chr8.3:9146656-9146675 | None:intergenic | 55.0% |
| !! | GGTTTTCGTTTGGAGCGAGG+AGG | + | chr8.3:9146653-9146672 | None:intergenic | 55.0% |
| !! | TGGTGGGACCGGTTTTCGTT+TGG | + | chr8.3:9146663-9146682 | None:intergenic | 55.0% |
| TGTGAGTCCAAGACGAGGGG+AGG | - | chr8.3:9148211-9148230 | MS.gene57744:intron | 60.0% | |
| !! | ACGTCAGTGGTTGGTGGGAC+CGG | + | chr8.3:9146674-9146693 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 9146647 | 9149955 | 9146647 | ID=MS.gene57744 |
| chr8.3 | mRNA | 9146647 | 9149955 | 9146647 | ID=MS.gene57744.t1;Parent=MS.gene57744 |
| chr8.3 | exon | 9149889 | 9149955 | 9149889 | ID=MS.gene57744.t1.exon1;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9149889 | 9149955 | 9149889 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9149594 | 9149684 | 9149594 | ID=MS.gene57744.t1.exon2;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9149594 | 9149684 | 9149594 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9149121 | 9149195 | 9149121 | ID=MS.gene57744.t1.exon3;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9149121 | 9149195 | 9149121 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9148993 | 9149029 | 9148993 | ID=MS.gene57744.t1.exon4;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9148993 | 9149029 | 9148993 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9147889 | 9147972 | 9147889 | ID=MS.gene57744.t1.exon5;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9147889 | 9147972 | 9147889 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9147698 | 9147758 | 9147698 | ID=MS.gene57744.t1.exon6;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9147698 | 9147758 | 9147698 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9147458 | 9147564 | 9147458 | ID=MS.gene57744.t1.exon7;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9147458 | 9147564 | 9147458 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9146975 | 9147040 | 9146975 | ID=MS.gene57744.t1.exon8;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9146975 | 9147040 | 9146975 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| chr8.3 | exon | 9146647 | 9146670 | 9146647 | ID=MS.gene57744.t1.exon9;Parent=MS.gene57744.t1 |
| chr8.3 | CDS | 9146647 | 9146670 | 9146647 | ID=cds.MS.gene57744.t1;Parent=MS.gene57744.t1 |
| Gene Sequence |
| Protein sequence |
