AlfalfaGEDB | MS.gene57905

M. sativa cultivar XinJiangDaYe / MS.gene57905

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57905.t1	AES92374.2	95.6	436	19	0	1	436	1	436	1.10E-241	845.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57905.t1	Q94CG0	60.0	425	154	5	5	428	7	416	4.2e-136	486.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57905.t1	G7JD36	95.6	436	19	0	1	436	1	436	8.2e-242	845.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene57905	MS.gene033811	PPI
MS.gene57905	MS.gene067126	PPI
MS.gene57905	MS.gene75814	PPI
MS.gene97056	MS.gene57905	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57905.t1	MTR_4g128820	95.642	436	19	0	1	436	1	436	0.0	872
MS.gene57905.t1	MTR_5g088350	49.409	423	206	4	5	424	8	425	8.81e-149	431
MS.gene57905.t1	MTR_8g024600	48.694	421	208	6	7	425	14	428	2.16e-140	409
MS.gene57905.t1	MTR_5g088350	50.255	392	187	4	5	393	8	394	1.06e-139	407
MS.gene57905.t1	MTR_5g067150	45.958	433	224	6	5	432	4	431	1.79e-139	407
MS.gene57905.t1	MTR_2g049790	47.674	430	204	7	8	425	21	441	7.19e-138	404
MS.gene57905.t1	MTR_4g114670	47.085	446	219	9	5	441	6	443	5.90e-137	401
MS.gene57905.t1	MTR_8g024590	48.219	421	209	6	7	425	14	427	7.96e-137	400
MS.gene57905.t1	MTR_5g088350	54.630	324	143	2	5	325	8	330	9.66e-131	381
MS.gene57905.t1	MTR_5g067150	44.676	432	192	6	5	432	4	392	2.82e-130	382

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57905.t1	AT5G57630	59.441	429	158	5	1	428	3	416	4.13e-179	507
MS.gene57905.t1	AT5G57630	59.277	415	153	5	1	414	3	402	1.52e-172	490
MS.gene57905.t1	AT2G26980	48.700	423	209	4	5	424	9	426	1.65e-147	427
MS.gene57905.t1	AT1G30270	50.816	429	194	7	7	425	28	449	1.81e-147	429
MS.gene57905.t1	AT2G26980	48.700	423	209	4	5	424	19	436	1.82e-147	428
MS.gene57905.t1	AT1G30270	50.816	429	194	7	7	425	28	449	3.21e-147	428
MS.gene57905.t1	AT1G01140	48.268	433	205	6	2	425	11	433	1.85e-145	422
MS.gene57905.t1	AT5G21326	46.330	436	224	5	5	437	8	436	8.36e-145	421
MS.gene57905.t1	AT1G01140	48.055	437	204	7	2	425	11	437	4.41e-144	419
MS.gene57905.t1	AT1G01140	48.046	435	205	7	2	425	11	435	1.85e-143	417

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Find 87 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTTGAACCGCATCC+TGG	0.449401	8.1:+4057809	MS.gene57905:CDS
AAACGCGTTAATGAAGCTCG+AGG	0.694476	8.1:-4058165	None:intergenic
AAACTTGCTCCTAGACAGCA+AGG	0.596920	8.1:+4057137	MS.gene57905:CDS
AAATATAGTTAGAATTCATG+AGG	0.662453	8.1:+4056659	MS.gene57905:CDS
AACATAGGAAAATATAGACT+TGG	0.587888	8.1:+4056390	MS.gene57905:CDS
AACTTGCTCCTAGACAGCAA+GGG	0.692224	8.1:+4057138	MS.gene57905:CDS
AATCTAAAAGTGTCTGATTT+TGG	0.148854	8.1:+4057162	MS.gene57905:CDS
ACCTCTGGAGCCACGTAACA+CGG	0.510854	8.1:-4057320	None:intergenic
ACTCGAAACAGACAATGACA+AGG	0.744420	8.1:+4058557	MS.gene57905:CDS
ACTCTGGATCGATGCGACAC+TGG	0.539439	8.1:+4058929	MS.gene57905:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAATACTGGTGAGAAAG+AGG	-	chr8.1:4056733-4056752	None:intergenic	30.0%
ATTTGATCCGATCATTAACT+TGG	+	chr8.1:4057999-4058018	MS.gene57905:CDS	30.0%
CAACAAATTGAATGAATGTG+AGG	+	chr8.1:4056950-4056969	MS.gene57905:CDS	30.0%
CTCACATTCATTCAATTTGT+TGG	-	chr8.1:4056952-4056971	None:intergenic	30.0%
GGCAAGTCTAAAAATTTGAA+AGG	+	chr8.1:4058241-4058260	MS.gene57905:intron	30.0%
GGTATAAATTCATCAAGTTC+TGG	-	chr8.1:4057609-4057628	None:intergenic	30.0%
GTACAAGTATCAAAATCTGT+AGG	+	chr8.1:4058748-4058767	MS.gene57905:CDS	30.0%
TAAATCAAAGTCCTGAAACA+TGG	-	chr8.1:4058201-4058220	None:intergenic	30.0%
TCAAATTCATACGCACAAAT+AGG	-	chr8.1:4057985-4058004	None:intergenic	30.0%
TGGATTAAGTACACTGAATA+AGG	+	chr8.1:4057182-4057201	MS.gene57905:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	4056375	4058975	4056375	ID=MS.gene57905
chr8.1	mRNA	4056375	4058975	4056375	ID=MS.gene57905.t1;Parent=MS.gene57905
chr8.1	exon	4056375	4056536	4056375	ID=MS.gene57905.t1.exon1;Parent=MS.gene57905.t1
chr8.1	CDS	4056375	4056536	4056375	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4056618	4056680	4056618	ID=MS.gene57905.t1.exon2;Parent=MS.gene57905.t1
chr8.1	CDS	4056618	4056680	4056618	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4056779	4056850	4056779	ID=MS.gene57905.t1.exon3;Parent=MS.gene57905.t1
chr8.1	CDS	4056779	4056850	4056779	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4056942	4057049	4056942	ID=MS.gene57905.t1.exon4;Parent=MS.gene57905.t1
chr8.1	CDS	4056942	4057049	4056942	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4057132	4057203	4057132	ID=MS.gene57905.t1.exon5;Parent=MS.gene57905.t1
chr8.1	CDS	4057132	4057203	4057132	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4057287	4057340	4057287	ID=MS.gene57905.t1.exon6;Parent=MS.gene57905.t1
chr8.1	CDS	4057287	4057340	4057287	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4057508	4057633	4057508	ID=MS.gene57905.t1.exon7;Parent=MS.gene57905.t1
chr8.1	CDS	4057508	4057633	4057508	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4057746	4057835	4057746	ID=MS.gene57905.t1.exon8;Parent=MS.gene57905.t1
chr8.1	CDS	4057746	4057835	4057746	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4057928	4058053	4057928	ID=MS.gene57905.t1.exon9;Parent=MS.gene57905.t1
chr8.1	CDS	4057928	4058053	4057928	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4058134	4058241	4058134	ID=MS.gene57905.t1.exon10;Parent=MS.gene57905.t1
chr8.1	CDS	4058134	4058241	4058134	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4058326	4058445	4058326	ID=MS.gene57905.t1.exon11;Parent=MS.gene57905.t1
chr8.1	CDS	4058326	4058445	4058326	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4058547	4058612	4058547	ID=MS.gene57905.t1.exon12;Parent=MS.gene57905.t1
chr8.1	CDS	4058547	4058612	4058547	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4058718	4058792	4058718	ID=MS.gene57905.t1.exon13;Parent=MS.gene57905.t1
chr8.1	CDS	4058718	4058792	4058718	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1
chr8.1	exon	4058868	4058975	4058868	ID=MS.gene57905.t1.exon14;Parent=MS.gene57905.t1
chr8.1	CDS	4058868	4058975	4058868	ID=cds.MS.gene57905.t1;Parent=MS.gene57905.t1

Gene Sequence

>MS.gene57905

ATGGTGTCTCCCAAAAACATAGGAAAATATAGACTTGGCAGGACCATAGGAGAAGGTACATTCTCTAAGGTTAAGATTGCTCTCAATAGCAACAATGGTGAGAAGGTAGCAATCAAGGTCATTGACAAACAAATGGTCTTGAAAAACAATCTAAAACATCAGGTAAACCTCATTTTGGTCCTTCTTCAAACAGCAAGTATTTTACTTCAAATAATAAAATATTAAGGCCAAAACATGTTTCAGGTACAAAGTGAGATTAGAACAATGAAACTTCTCCATCATCCAAATATAGTTAGAATTCATGAGGTATATACCCTCTGGTGTTGGAATTCTTGTGAGTCTTGAAGATTCATAACCTCTTTCTCACCAGTATTAATTTTTGAATGAATTTCATCATAAAACAGGTTATTGGCACAAAAACAAAAATATACATTGTGATGGAATATGTATCAGGAGGTCAACTATTGGACAAAATAGTAAGAATCATATCAACAATCTCTTCTTGTTCAAATTTTGTGTACTTACACTTATAATTCTTCAATAATTCTGATAATATTATTTTTGTAGTCCTATTCCAACAAATTGAATGAATGTGAGGCAAGAAAACTATTCCATCAACTTATTGATGCCGTCGATTACTGCCATAACAAGGGAGTTTATCATCGTGATCTCAAGGTAAGTTAAATCAATCCTGCTTTTTTCTTTGTTTAGAAAAACAAGTTTCGAAACCTTACACCTTTTACATGTGACAATACAGCCAGAAAACTTGCTCCTAGACAGCAAGGGAAATCTAAAAGTGTCTGATTTTGGATTAAGTACACTGAATAAGGTAAAAAATTTGTTTCAACCTAATCACTAGTTCAATTGTAAGTCTTTTTGATTGGTAACGATTAAATTTTGATACATTGGCAGCCTAATGATGTCCTAAACACAAAGTGTGGATCCCCGTGTTACGTGGCTCCAGAGGTAAGATCGAGTGAGGGAAAGTGTTGGGGAGTCCGAGGGAGTACCTGAGAGCAACGATGTGCTAAAGAGCTCCCCAGACTCCCCAATAGAAAGAGTGCTAGGGACCACTTTTATTATGCGATACATTTATTATTGATTTTGTGACCCTTATAGTTCCTCATTTGCAGCTGCTGATGAGCAAAGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAGTTAATTGCTGGTTTTCTACCATTTGATGACCAGAACTTGATGAATTTATACCATAAGGTATATATTCGAGTATAGTATACCATATATAATCATGAAGATAACAAAGAAAACACCTAGTGTTTGATTCAACTAATTCTCATTTTCTTGTAACTTTCCTGTGTGAAAAAAGATATGCAGAGCGGAATACGTATGTGCCCCATGGTTTACTCAAAGTCAAAAGAAACTAATTGCGAAAATACTTGAACCGCATCCTGGAAAGGTAGAAATTCAAGAACTATTGCACTGTGCTTAAACTTAAAAGTGTAATTGATAGTTACTAACTTGTTTGACTTCCTTCCAAATCTCTCACAGCGGATAACTATTTCGGGTATTATTAATGATGAGTGGTTTCAAACAGATTATAAGCCTATTTGTGCGTATGAATTTGATCCGATCATTAACTTGGGTGATGATAGTTGTGCTTTCGATTCAATCGAGGTAATTTGTTACCAAATAGCAGTCATAGAAAACACTAAATTGGAGTTATGGATCAAATTGTCTAACAATATGTGCTATAGGAGAAAACTACAAAGCCAACGATGACCAAGTCCTCGAGCTTCATTAACGCGTTTCAACTGATAGCCATGTTTCAGGACTTTGATTTATCCACCCTTTTTGAAGAACAGGCAAGTCTAAAAATTTGAAAGGGTATTTAAATTATCTACAGATCCTTTAATTAAAAATGCTGATGTTATGAGTTTGATGTTTAGGATCAAATGAAGCAGACAACAAGGCTTGGATCCCAACATACAATCACTGAAACCGTCGAAAAAATAGAAGCTGCTGCAACAAATGTTAGACTGTCAGTAGAGAAAATGAACAACTTTAAGGTCTAAAACAGTCCTTATATTTTGATTCTTAAATGCTTGATGAAAATATTAACCTTTTCTAGAGACTTGCAACACAAATAAACTTTGACTCTTCATGTCAGATGAAAATGCACTCGAAACAGACAATGACAAGGTGTTCTAGATCATACCTTGACATATCAGCTGAGGTCATACTCATTTTATGGTCACATACTCTCCCTCTTTTCCTTTTATCTTTCTTTATTATTAAACCAAGCTCATTTCTGTACTGATATATGCGTCGAAATTGTCAGGTGATAGAAGTTGCTCCGGCTCATTGTGTTGTACAAGTATCAAAATCTGTAGGAGATCTAAGAATGTATAATGAAGTAAGAAAACATATCCTGTTAATTGAATATTCATAAGATCGTAAATATGGTTACTGATTTAATTTTGATTATCAGTTTTGTGAAAGTTTATCAAATCTTCTGAAAGACGAATCTAGTATTCCACCACACGGCCAAGACTCTGGATCGATGCGACACTGGCAGTGTAGAAAAGCAAGATGCTGA

Protein sequence

>MS.gene57905.t1

MVSPKNIGKYRLGRTIGEGTFSKVKIALNSNNGEKVAIKVIDKQMVLKNNLKHQVQSEIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKISYSNKLNECEARKLFHQLIDAVDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSTLNKPNDVLNTKCGSPCYVAPELLMSKGYDGAAADVWSCGVILFELIAGFLPFDDQNLMNLYHKICRAEYVCAPWFTQSQKKLIAKILEPHPGKRITISGIINDEWFQTDYKPICAYEFDPIINLGDDSCAFDSIEEKTTKPTMTKSSSFINAFQLIAMFQDFDLSTLFEEQDQMKQTTRLGSQHTITETVEKIEAAATNVRLSVEKMNNFKMKMHSKQTMTRCSRSYLDISAEVIEVAPAHCVVQVSKSVGDLRMYNEFCESLSNLLKDESSIPPHGQDSGSMRHWQCRKARC