Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58281.t1 | KEH32137.1 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 4.60E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58281.t1 | Q6S5G3 | 55.1 | 323 | 140 | 2 | 8 | 326 | 38 | 359 | 2.4e-96 | 353.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58281.t1 | A0A072UR28 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 3.3e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene58281 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene58281 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene58281 | 0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene059079 | MS.gene58281 | 0.848675 | 5.27E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58281.t1 | MTR_4g115710 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 666 |
| MS.gene58281.t1 | MTR_4g115710 | 98.754 | 321 | 4 | 0 | 7 | 327 | 51 | 371 | 0.0 | 655 |
| MS.gene58281.t1 | MTR_4g115710 | 98.754 | 321 | 4 | 0 | 7 | 327 | 52 | 372 | 0.0 | 655 |
| MS.gene58281.t1 | MTR_4g115710 | 98.734 | 237 | 3 | 0 | 91 | 327 | 1 | 237 | 3.10e-172 | 493 |
| MS.gene58281.t1 | MTR_2g030630 | 50.183 | 273 | 132 | 3 | 56 | 327 | 629 | 898 | 1.94e-85 | 280 |
| MS.gene58281.t1 | MTR_8g088370 | 42.405 | 316 | 170 | 3 | 17 | 327 | 633 | 941 | 4.62e-72 | 242 |
| MS.gene58281.t1 | MTR_2g030160 | 42.199 | 282 | 154 | 4 | 51 | 327 | 131 | 408 | 1.08e-61 | 211 |
| MS.gene58281.t1 | MTR_4g119910 | 40.476 | 294 | 162 | 5 | 38 | 326 | 536 | 821 | 4.18e-61 | 209 |
| MS.gene58281.t1 | MTR_7g088050 | 31.000 | 200 | 124 | 3 | 132 | 326 | 39 | 229 | 6.81e-22 | 94.7 |
| MS.gene58281.t1 | MTR_3g090160 | 31.500 | 200 | 123 | 4 | 132 | 326 | 40 | 230 | 1.19e-21 | 94.0 |
| MS.gene58281.t1 | MTR_7g088050 | 29.592 | 196 | 124 | 3 | 132 | 322 | 39 | 225 | 2.28e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58281.t1 | AT5G20300 | 59.107 | 291 | 118 | 1 | 36 | 326 | 70 | 359 | 4.98e-125 | 377 |
| MS.gene58281.t1 | AT5G20300 | 59.107 | 291 | 118 | 1 | 36 | 326 | 70 | 359 | 4.98e-125 | 377 |
| MS.gene58281.t1 | AT5G20300 | 59.107 | 291 | 118 | 1 | 36 | 326 | 70 | 359 | 4.98e-125 | 377 |
| MS.gene58281.t1 | AT5G20300 | 59.107 | 291 | 118 | 1 | 36 | 326 | 70 | 359 | 4.98e-125 | 377 |
| MS.gene58281.t1 | AT5G20300 | 60.606 | 231 | 90 | 1 | 96 | 326 | 2 | 231 | 9.88e-103 | 315 |
| MS.gene58281.t1 | AT3G16620 | 47.771 | 314 | 154 | 5 | 15 | 327 | 346 | 650 | 6.01e-86 | 280 |
| MS.gene58281.t1 | AT2G16640 | 48.333 | 300 | 146 | 4 | 29 | 327 | 477 | 768 | 4.06e-85 | 278 |
| MS.gene58281.t1 | AT2G16640 | 48.333 | 300 | 146 | 4 | 29 | 327 | 477 | 768 | 4.06e-85 | 278 |
| MS.gene58281.t1 | AT2G16640 | 48.333 | 300 | 146 | 4 | 29 | 327 | 477 | 768 | 4.06e-85 | 278 |
| MS.gene58281.t1 | AT4G02510 | 44.343 | 327 | 154 | 6 | 17 | 327 | 740 | 1054 | 1.44e-73 | 247 |
| MS.gene58281.t1 | AT4G02510 | 44.343 | 327 | 154 | 6 | 17 | 327 | 740 | 1054 | 1.44e-73 | 247 |
| MS.gene58281.t1 | AT4G02510 | 44.343 | 327 | 154 | 6 | 17 | 327 | 740 | 1054 | 1.44e-73 | 247 |
| MS.gene58281.t1 | AT4G02510 | 44.343 | 327 | 154 | 6 | 17 | 327 | 740 | 1054 | 1.44e-73 | 247 |
| MS.gene58281.t1 | AT5G05000 | 33.000 | 200 | 120 | 4 | 132 | 326 | 38 | 228 | 3.49e-25 | 103 |
| MS.gene58281.t1 | AT5G05000 | 33.000 | 200 | 120 | 4 | 132 | 326 | 38 | 228 | 3.49e-25 | 103 |
| MS.gene58281.t1 | AT5G05000 | 33.000 | 200 | 120 | 4 | 132 | 326 | 38 | 228 | 3.49e-25 | 103 |
| MS.gene58281.t1 | AT1G02280 | 31.343 | 201 | 124 | 4 | 132 | 327 | 36 | 227 | 3.09e-24 | 100 |
| MS.gene58281.t1 | AT1G02280 | 31.343 | 201 | 124 | 4 | 132 | 327 | 36 | 227 | 3.09e-24 | 100 |
| MS.gene58281.t1 | AT4G15810 | 36.905 | 168 | 96 | 4 | 31 | 195 | 532 | 692 | 2.71e-19 | 89.4 |
Find 78 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTCTCTTCACATTAT+TGG | 0.185965 | 8.3:-10643912 | None:intergenic |
| TCAGTGCCCTAGAAATATTT+TGG | 0.225345 | 8.3:+10644261 | MS.gene58281:CDS |
| AAACTCATAACCGAGGTATT+TGG | 0.236608 | 8.3:+10644046 | MS.gene58281:CDS |
| CATGTTGGTTTGCTATTTCT+CGG | 0.265205 | 8.3:-10643670 | None:intergenic |
| CGGCTTGATCTGATCAATTC+TGG | 0.269125 | 8.3:+10644001 | MS.gene58281:CDS |
| TGACAGTTCCCACAATTTCT+TGG | 0.276558 | 8.3:-10643838 | None:intergenic |
| CTCGGGCTCCACTGCTACTA+AGG | 0.331711 | 8.3:-10643652 | None:intergenic |
| GTATATCCGTTAGGTCCTTC+TGG | 0.339162 | 8.3:-10644124 | None:intergenic |
| AGGTATTTGGTGCGGCAATC+TGG | 0.352278 | 8.3:+10644059 | MS.gene58281:CDS |
| CAATCTCAACATAGTGGAAA+TGG | 0.360741 | 8.3:+10643461 | MS.gene58281:CDS |
| TGGTCGCAAAGGTTCTTTAT+CGG | 0.375336 | 8.3:+10643576 | MS.gene58281:CDS |
| ATACTTGTCCTTGGTAAAAC+AGG | 0.383290 | 8.3:+10643731 | MS.gene58281:CDS |
| GATCTCCAAACCTGTCCATT+AGG | 0.394376 | 8.3:-10644298 | None:intergenic |
| TTCCGCCTTCTCCAGCGGCT+TGG | 0.405120 | 8.3:+10643533 | MS.gene58281:CDS |
| GGGGAGAAAATCCTTCCTAA+TGG | 0.412001 | 8.3:+10644283 | MS.gene58281:CDS |
| TCAAAGTACAAAACGATGTC+TGG | 0.432440 | 8.3:-10643977 | None:intergenic |
| GGCAGCTGGTATGCCTCAAT+TGG | 0.440174 | 8.3:+10643694 | MS.gene58281:CDS |
| CACAATTTCTTGGATGCAAT+CGG | 0.444607 | 8.3:-10643828 | None:intergenic |
| ATCAAATATAGAGTTTATAG+TGG | 0.457971 | 8.3:-10643768 | None:intergenic |
| TTTGATTCGTGCTGAGGAAA+CGG | 0.459088 | 8.3:+10643613 | MS.gene58281:CDS |
| ACCAAGGACAAGTATTCTGC+AGG | 0.459184 | 8.3:-10643723 | None:intergenic |
| ATGTTGGTTTGCTATTTCTC+GGG | 0.459728 | 8.3:-10643669 | None:intergenic |
| GGATACTTTGGCAAAGGTTG+AGG | 0.461427 | 8.3:+10643493 | MS.gene58281:CDS |
| GTAGCATTGCCGATTCCGTC+TGG | 0.464728 | 8.3:+10643362 | MS.gene58281:CDS |
| TTTGATGTGCCAGACGGAAT+CGG | 0.471290 | 8.3:-10643371 | None:intergenic |
| TCCTGCAGAATACTTGTCCT+TGG | 0.471790 | 8.3:+10643722 | MS.gene58281:CDS |
| CATTATTGGTAGAGGAAGGC+AGG | 0.481129 | 8.3:-10643898 | None:intergenic |
| ATCAGGCAATGTTAGATTCA+AGG | 0.481132 | 8.3:+10644203 | MS.gene58281:CDS |
| TCTTGGATGCAATCGGTAGC+AGG | 0.484735 | 8.3:-10643821 | None:intergenic |
| GTAGAGGAAGGCAGGAAACC+AGG | 0.489089 | 8.3:-10643890 | None:intergenic |
| TGGAAGACGGAAGGATACTT+TGG | 0.494840 | 8.3:+10643481 | MS.gene58281:CDS |
| AAATTGTGGGAACTGTCAAC+GGG | 0.494864 | 8.3:+10643843 | MS.gene58281:CDS |
| GAAAATCCTTCCTAATGGAC+AGG | 0.496835 | 8.3:+10644288 | MS.gene58281:CDS |
| ACTGGCCAAGCCGCTGGAGA+AGG | 0.499320 | 8.3:-10643538 | None:intergenic |
| TCTCTTCACATTATTGGTAG+AGG | 0.504702 | 8.3:-10643906 | None:intergenic |
| CGATTGCATCCAAGAAATTG+TGG | 0.509792 | 8.3:+10643829 | MS.gene58281:CDS |
| GGCCAAGCCGCTGGAGAAGG+CGG | 0.516150 | 8.3:-10643535 | None:intergenic |
| GAAATTGTGGGAACTGTCAA+CGG | 0.521304 | 8.3:+10643842 | MS.gene58281:CDS |
| TATTTCTAGGGCACTGAGGA+TGG | 0.523674 | 8.3:-10644255 | None:intergenic |
| AGAGTTAACCTTAGTAGCAG+TGG | 0.524095 | 8.3:+10643644 | MS.gene58281:CDS |
| ATAACGTTTATTGATACCCC+TGG | 0.524878 | 8.3:+10643872 | MS.gene58281:CDS |
| AATACAGCAGTATATACATC+AGG | 0.529432 | 8.3:+10644186 | MS.gene58281:CDS |
| CGGTTATGAGTTTCAAAAGT+GGG | 0.531512 | 8.3:-10644036 | None:intergenic |
| GTCCTTGGTAAAACAGGAGT+TGG | 0.536410 | 8.3:+10643737 | MS.gene58281:CDS |
| GGCAACTTTGATTCGTGCTG+AGG | 0.539713 | 8.3:+10643607 | MS.gene58281:CDS |
| ATTTATCAATCTCAACATAG+TGG | 0.546709 | 8.3:+10643455 | MS.gene58281:CDS |
| TAATTAACAGTATATCCGTT+AGG | 0.548451 | 8.3:-10644133 | None:intergenic |
| ATAATGTGAAGAGAAATAAG+AGG | 0.552411 | 8.3:+10643915 | MS.gene58281:CDS |
| TTCACATTATTGGTAGAGGA+AGG | 0.558967 | 8.3:-10643902 | None:intergenic |
| GGTTCTTTATCGGATGCACC+TGG | 0.562373 | 8.3:+10643586 | MS.gene58281:CDS |
| CCAGTCAAAAGAAAACCTCT+TGG | 0.562419 | 8.3:+10643556 | MS.gene58281:CDS |
| TCCAAACCTGTCCATTAGGA+AGG | 0.569812 | 8.3:-10644294 | None:intergenic |
| GCAAACCAACATGAGGCAGC+TGG | 0.573659 | 8.3:+10643680 | MS.gene58281:CDS |
| CAGCACGAATCAAAGTTGCC+AGG | 0.573919 | 8.3:-10643604 | None:intergenic |
| AGAAAACCTCTTGGTCGCAA+AGG | 0.576656 | 8.3:+10643565 | MS.gene58281:CDS |
| TAGAGGAAGGCAGGAAACCA+GGG | 0.579361 | 8.3:-10643889 | None:intergenic |
| TGCATCTGAAGCTTGCTGCA+AGG | 0.583506 | 8.3:-10643429 | None:intergenic |
| GATTGCATCCAAGAAATTGT+GGG | 0.583925 | 8.3:+10643830 | MS.gene58281:CDS |
| GCATACCAGCTGCCTCATGT+TGG | 0.587195 | 8.3:-10643685 | None:intergenic |
| ACGGAAGGATACTTTGGCAA+AGG | 0.588504 | 8.3:+10643487 | MS.gene58281:CDS |
| TAGAACTGCTCTGATTACTC+TGG | 0.589157 | 8.3:-10643406 | None:intergenic |
| AACATAGTGGAAATGGAAGA+CGG | 0.597730 | 8.3:+10643468 | MS.gene58281:CDS |
| ACTGCTCTGATTACTCTGGT+TGG | 0.608053 | 8.3:-10643402 | None:intergenic |
| AAAGAACCTTTGCGACCAAG+AGG | 0.609848 | 8.3:-10643571 | None:intergenic |
| TAGTGGAAATGGAAGACGGA+AGG | 0.611895 | 8.3:+10643472 | MS.gene58281:CDS |
| TCGGTTATGAGTTTCAAAAG+TGG | 0.613599 | 8.3:-10644037 | None:intergenic |
| TCATCCTCATCTATTCCAGA+AGG | 0.615247 | 8.3:+10644109 | MS.gene58281:CDS |
| CTGCAGGAGAAGTCCAATTG+AGG | 0.616507 | 8.3:-10643707 | None:intergenic |
| TCTATTCCAGAAGGACCTAA+CGG | 0.628397 | 8.3:+10644118 | MS.gene58281:CDS |
| AGGTCCTTCTGGAATAGATG+AGG | 0.635072 | 8.3:-10644113 | None:intergenic |
| GAAGAGTTTGATGTGCCAGA+CGG | 0.650267 | 8.3:-10643377 | None:intergenic |
| AGAGGAAGGCAGGAAACCAG+GGG | 0.656772 | 8.3:-10643888 | None:intergenic |
| CATAACCGAGGTATTTGGTG+CGG | 0.667741 | 8.3:+10644051 | MS.gene58281:CDS |
| AAGTACAAAACGATGTCTGG+AGG | 0.667898 | 8.3:-10643974 | None:intergenic |
| AGGTTGAAAAGCATTAGTCG+TGG | 0.671619 | 8.3:-10643801 | None:intergenic |
| AGAAATAGCAAACCAACATG+AGG | 0.671633 | 8.3:+10643673 | MS.gene58281:CDS |
| GATTGCCGCACCAAATACCT+CGG | 0.694787 | 8.3:-10644056 | None:intergenic |
| AAAATATTTCTAGGGCACTG+AGG | 0.697500 | 8.3:-10644259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATATAGAGTTTATAG+TGG | - | chr8.3:10643771-10643790 | None:intergenic | 20.0% |
| ! | ATAATGTGAAGAGAAATAAG+AGG | + | chr8.3:10643915-10643934 | MS.gene58281:CDS | 25.0% |
| ! | ATTTATCAATCTCAACATAG+TGG | + | chr8.3:10643455-10643474 | MS.gene58281:CDS | 25.0% |
| ! | TAATTAACAGTATATCCGTT+AGG | - | chr8.3:10644136-10644155 | None:intergenic | 25.0% |
| !! | CTTATTTCTCTTCACATTAT+TGG | - | chr8.3:10643915-10643934 | None:intergenic | 25.0% |
| AATACAGCAGTATATACATC+AGG | + | chr8.3:10644186-10644205 | MS.gene58281:CDS | 30.0% | |
| ! | ACATCGTTTTGTACTTTGAA+CGG | + | chr8.3:10643981-10644000 | MS.gene58281:CDS | 30.0% |
| AGAAATAGCAAACCAACATG+AGG | + | chr8.3:10643673-10643692 | MS.gene58281:CDS | 35.0% | |
| ATAACGTTTATTGATACCCC+TGG | + | chr8.3:10643872-10643891 | MS.gene58281:CDS | 35.0% | |
| ATACTTGTCCTTGGTAAAAC+AGG | + | chr8.3:10643731-10643750 | MS.gene58281:CDS | 35.0% | |
| ATCAGGCAATGTTAGATTCA+AGG | + | chr8.3:10644203-10644222 | MS.gene58281:CDS | 35.0% | |
| CACAATTTCTTGGATGCAAT+CGG | - | chr8.3:10643831-10643850 | None:intergenic | 35.0% | |
| CGGTTATGAGTTTCAAAAGT+GGG | - | chr8.3:10644039-10644058 | None:intergenic | 35.0% | |
| GAAGGCGGAAAAATTTAACT+TGG | - | chr8.3:10643523-10643542 | None:intergenic | 35.0% | |
| GATTGCATCCAAGAAATTGT+GGG | + | chr8.3:10643830-10643849 | MS.gene58281:CDS | 35.0% | |
| TCAAAGTACAAAACGATGTC+TGG | - | chr8.3:10643980-10643999 | None:intergenic | 35.0% | |
| TCGGTTATGAGTTTCAAAAG+TGG | - | chr8.3:10644040-10644059 | None:intergenic | 35.0% | |
| TCTCTTCACATTATTGGTAG+AGG | - | chr8.3:10643909-10643928 | None:intergenic | 35.0% | |
| TTCACATTATTGGTAGAGGA+AGG | - | chr8.3:10643905-10643924 | None:intergenic | 35.0% | |
| TTCTCCCCCAAAATATTTCT+AGG | - | chr8.3:10644271-10644290 | None:intergenic | 35.0% | |
| ! | AAACTCATAACCGAGGTATT+TGG | + | chr8.3:10644046-10644065 | MS.gene58281:CDS | 35.0% |
| ! | AACATAGTGGAAATGGAAGA+CGG | + | chr8.3:10643468-10643487 | MS.gene58281:CDS | 35.0% |
| ! | AGTGCCCTAGAAATATTTTG+GGG | + | chr8.3:10644263-10644282 | MS.gene58281:CDS | 35.0% |
| ! | CAATCTCAACATAGTGGAAA+TGG | + | chr8.3:10643461-10643480 | MS.gene58281:CDS | 35.0% |
| ! | CAGTGCCCTAGAAATATTTT+GGG | + | chr8.3:10644262-10644281 | MS.gene58281:CDS | 35.0% |
| ! | TCAGTGCCCTAGAAATATTT+TGG | + | chr8.3:10644261-10644280 | MS.gene58281:CDS | 35.0% |
| ! | TCTCCCCCAAAATATTTCTA+GGG | - | chr8.3:10644270-10644289 | None:intergenic | 35.0% |
| !! | AAAATATTTCTAGGGCACTG+AGG | - | chr8.3:10644262-10644281 | None:intergenic | 35.0% |
| !! | ATGTTGGTTTGCTATTTCTC+GGG | - | chr8.3:10643672-10643691 | None:intergenic | 35.0% |
| !! | CATGTTGGTTTGCTATTTCT+CGG | - | chr8.3:10643673-10643692 | None:intergenic | 35.0% |
| !!! | ACTTTTGAAACTCATAACCG+AGG | + | chr8.3:10644039-10644058 | MS.gene58281:CDS | 35.0% |
| AAATTGTGGGAACTGTCAAC+GGG | + | chr8.3:10643843-10643862 | MS.gene58281:CDS | 40.0% | |
| AAGTACAAAACGATGTCTGG+AGG | - | chr8.3:10643977-10643996 | None:intergenic | 40.0% | |
| AGAGTTAACCTTAGTAGCAG+TGG | + | chr8.3:10643644-10643663 | MS.gene58281:CDS | 40.0% | |
| CCAGTCAAAAGAAAACCTCT+TGG | + | chr8.3:10643556-10643575 | MS.gene58281:CDS | 40.0% | |
| CGATTGCATCCAAGAAATTG+TGG | + | chr8.3:10643829-10643848 | MS.gene58281:CDS | 40.0% | |
| GAAATTGTGGGAACTGTCAA+CGG | + | chr8.3:10643842-10643861 | MS.gene58281:CDS | 40.0% | |
| TAGAACTGCTCTGATTACTC+TGG | - | chr8.3:10643409-10643428 | None:intergenic | 40.0% | |
| TCATCCTCATCTATTCCAGA+AGG | + | chr8.3:10644109-10644128 | MS.gene58281:CDS | 40.0% | |
| TCTATTCCAGAAGGACCTAA+CGG | + | chr8.3:10644118-10644137 | MS.gene58281:CDS | 40.0% | |
| TGACAGTTCCCACAATTTCT+TGG | - | chr8.3:10643841-10643860 | None:intergenic | 40.0% | |
| TGGTCGCAAAGGTTCTTTAT+CGG | + | chr8.3:10643576-10643595 | MS.gene58281:CDS | 40.0% | |
| ! | CCAAGAGGTTTTCTTTTGAC+TGG | - | chr8.3:10643559-10643578 | None:intergenic | 40.0% |
| ! | GGTTCTCAACAAAAAGTGCA+GGG | - | chr8.3:10644237-10644256 | None:intergenic | 40.0% |
| ! | TGGTTCTCAACAAAAAGTGC+AGG | - | chr8.3:10644238-10644257 | None:intergenic | 40.0% |
| ! | TTCCAACTCCTGTTTTACCA+AGG | - | chr8.3:10643742-10643761 | None:intergenic | 40.0% |
| ! | TTTGATTCGTGCTGAGGAAA+CGG | + | chr8.3:10643613-10643632 | MS.gene58281:CDS | 40.0% |
| !! | AGGTTGAAAAGCATTAGTCG+TGG | - | chr8.3:10643804-10643823 | None:intergenic | 40.0% |
| !! | GTGCCCTAGAAATATTTTGG+GGG | + | chr8.3:10644264-10644283 | MS.gene58281:CDS | 40.0% |
| AAAGAACCTTTGCGACCAAG+AGG | - | chr8.3:10643574-10643593 | None:intergenic | 45.0% | |
| ACCAAGGACAAGTATTCTGC+AGG | - | chr8.3:10643726-10643745 | None:intergenic | 45.0% | |
| ACGGAAGGATACTTTGGCAA+AGG | + | chr8.3:10643487-10643506 | MS.gene58281:CDS | 45.0% | |
| ACTGCTCTGATTACTCTGGT+TGG | - | chr8.3:10643405-10643424 | None:intergenic | 45.0% | |
| AGAAAACCTCTTGGTCGCAA+AGG | + | chr8.3:10643565-10643584 | MS.gene58281:CDS | 45.0% | |
| CATTATTGGTAGAGGAAGGC+AGG | - | chr8.3:10643901-10643920 | None:intergenic | 45.0% | |
| CGGCTTGATCTGATCAATTC+TGG | + | chr8.3:10644001-10644020 | MS.gene58281:CDS | 45.0% | |
| GAAGAGTTTGATGTGCCAGA+CGG | - | chr8.3:10643380-10643399 | None:intergenic | 45.0% | |
| GGATACTTTGGCAAAGGTTG+AGG | + | chr8.3:10643493-10643512 | MS.gene58281:CDS | 45.0% | |
| GGGGAGAAAATCCTTCCTAA+TGG | + | chr8.3:10644283-10644302 | MS.gene58281:CDS | 45.0% | |
| GTATATCCGTTAGGTCCTTC+TGG | - | chr8.3:10644127-10644146 | None:intergenic | 45.0% | |
| GTCCTTGGTAAAACAGGAGT+TGG | + | chr8.3:10643737-10643756 | MS.gene58281:CDS | 45.0% | |
| TAGTGGAAATGGAAGACGGA+AGG | + | chr8.3:10643472-10643491 | MS.gene58281:CDS | 45.0% | |
| TCCTGCAGAATACTTGTCCT+TGG | + | chr8.3:10643722-10643741 | MS.gene58281:CDS | 45.0% | |
| TGGAAGACGGAAGGATACTT+TGG | + | chr8.3:10643481-10643500 | MS.gene58281:CDS | 45.0% | |
| TTTGATGTGCCAGACGGAAT+CGG | - | chr8.3:10643374-10643393 | None:intergenic | 45.0% | |
| ! | AATTTTTCCGCCTTCTCCAG+CGG | + | chr8.3:10643528-10643547 | MS.gene58281:CDS | 45.0% |
| ! | CATAACCGAGGTATTTGGTG+CGG | + | chr8.3:10644051-10644070 | MS.gene58281:CDS | 45.0% |
| !! | AGGTCCTTCTGGAATAGATG+AGG | - | chr8.3:10644116-10644135 | None:intergenic | 45.0% |
| !! | TATTTCTAGGGCACTGAGGA+TGG | - | chr8.3:10644258-10644277 | None:intergenic | 45.0% |
| CAGCACGAATCAAAGTTGCC+AGG | - | chr8.3:10643607-10643626 | None:intergenic | 50.0% | |
| CTGCAGGAGAAGTCCAATTG+AGG | - | chr8.3:10643710-10643729 | None:intergenic | 50.0% | |
| GATTGCCGCACCAAATACCT+CGG | - | chr8.3:10644059-10644078 | None:intergenic | 50.0% | |
| GGTTCTTTATCGGATGCACC+TGG | + | chr8.3:10643586-10643605 | MS.gene58281:CDS | 50.0% | |
| TAGAGGAAGGCAGGAAACCA+GGG | - | chr8.3:10643892-10643911 | None:intergenic | 50.0% | |
| TCTTGGATGCAATCGGTAGC+AGG | - | chr8.3:10643824-10643843 | None:intergenic | 50.0% | |
| ! | GGCAACTTTGATTCGTGCTG+AGG | + | chr8.3:10643607-10643626 | MS.gene58281:CDS | 50.0% |
| !! | AGGTATTTGGTGCGGCAATC+TGG | + | chr8.3:10644059-10644078 | MS.gene58281:CDS | 50.0% |
| !! | TGCATCTGAAGCTTGCTGCA+AGG | - | chr8.3:10643432-10643451 | None:intergenic | 50.0% |
| AGAGGAAGGCAGGAAACCAG+GGG | - | chr8.3:10643891-10643910 | None:intergenic | 55.0% | |
| GCAAACCAACATGAGGCAGC+TGG | + | chr8.3:10643680-10643699 | MS.gene58281:CDS | 55.0% | |
| GCATACCAGCTGCCTCATGT+TGG | - | chr8.3:10643688-10643707 | None:intergenic | 55.0% | |
| GGCAGCTGGTATGCCTCAAT+TGG | + | chr8.3:10643694-10643713 | MS.gene58281:CDS | 55.0% | |
| GTAGAGGAAGGCAGGAAACC+AGG | - | chr8.3:10643893-10643912 | None:intergenic | 55.0% | |
| !! | GTAGCATTGCCGATTCCGTC+TGG | + | chr8.3:10643362-10643381 | MS.gene58281:CDS | 55.0% |
| CTCGGGCTCCACTGCTACTA+AGG | - | chr8.3:10643655-10643674 | None:intergenic | 60.0% | |
| !! | CTTTTGACTGGCCAAGCCGC+TGG | - | chr8.3:10643547-10643566 | None:intergenic | 60.0% |
| ACTGGCCAAGCCGCTGGAGA+AGG | - | chr8.3:10643541-10643560 | None:intergenic | 65.0% | |
| TTCCGCCTTCTCCAGCGGCT+TGG | + | chr8.3:10643533-10643552 | MS.gene58281:CDS | 65.0% | |
| GGCCAAGCCGCTGGAGAAGG+CGG | - | chr8.3:10643538-10643557 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 10643329 | 10644309 | 10643329 | ID=MS.gene58281 |
| chr8.3 | mRNA | 10643329 | 10644309 | 10643329 | ID=MS.gene58281.t1;Parent=MS.gene58281 |
| chr8.3 | exon | 10643329 | 10644309 | 10643329 | ID=MS.gene58281.t1.exon1;Parent=MS.gene58281.t1 |
| chr8.3 | CDS | 10643329 | 10644309 | 10643329 | ID=cds.MS.gene58281.t1;Parent=MS.gene58281.t1 |
| Gene Sequence |
| Protein sequence |
