Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58472.t1 | XP_003609672.1 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 4.20E-268 | 933.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58472.t1 | O22775 | 80.1 | 462 | 80 | 3 | 1 | 453 | 1 | 459 | 1.8e-227 | 789.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58472.t1 | G7JLH4 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 3.0e-268 | 933.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055531 | MS.gene58472 | 0.804767 | 1.84E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58472.t1 | MTR_4g119880 | 98.899 | 454 | 5 | 0 | 1 | 454 | 1 | 454 | 0.0 | 943 |
MS.gene58472.t1 | MTR_7g108675 | 78.373 | 467 | 87 | 3 | 1 | 454 | 1 | 466 | 0.0 | 754 |
MS.gene58472.t1 | MTR_8g058553 | 78.072 | 415 | 77 | 3 | 1 | 402 | 1 | 414 | 0.0 | 669 |
MS.gene58472.t1 | MTR_3g037340 | 58.469 | 431 | 154 | 4 | 10 | 440 | 36 | 441 | 0.0 | 546 |
MS.gene58472.t1 | MTR_4g108940 | 57.240 | 442 | 165 | 4 | 8 | 449 | 28 | 445 | 0.0 | 545 |
MS.gene58472.t1 | MTR_5g015260 | 42.526 | 388 | 181 | 7 | 79 | 431 | 66 | 446 | 8.83e-111 | 334 |
MS.gene58472.t1 | MTR_4g097240 | 39.486 | 428 | 206 | 8 | 27 | 421 | 19 | 426 | 1.93e-108 | 328 |
MS.gene58472.t1 | MTR_4g097230 | 43.466 | 352 | 160 | 6 | 107 | 424 | 69 | 415 | 1.37e-101 | 310 |
MS.gene58472.t1 | MTR_4g108950 | 49.606 | 127 | 20 | 1 | 285 | 411 | 1 | 83 | 2.66e-33 | 121 |
MS.gene58472.t1 | MTR_4g132910 | 82.051 | 39 | 7 | 0 | 357 | 395 | 582 | 620 | 2.16e-13 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58472.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene58472.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene58472.t1 | AT4G02500 | 79.914 | 463 | 81 | 3 | 1 | 454 | 1 | 460 | 0.0 | 761 |
MS.gene58472.t1 | AT1G74380 | 58.879 | 428 | 153 | 5 | 13 | 440 | 42 | 446 | 0.0 | 553 |
MS.gene58472.t1 | AT5G07720 | 58.469 | 431 | 155 | 5 | 10 | 440 | 39 | 445 | 0.0 | 551 |
MS.gene58472.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58472.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58472.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58472.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58472.t1 | AT2G22900 | 42.120 | 349 | 159 | 5 | 107 | 417 | 89 | 432 | 1.92e-96 | 297 |
MS.gene58472.t1 | AT4G37690 | 40.974 | 349 | 163 | 6 | 107 | 417 | 72 | 415 | 1.35e-94 | 292 |
MS.gene58472.t1 | AT4G38310 | 44.444 | 108 | 56 | 2 | 107 | 213 | 13 | 117 | 6.40e-28 | 107 |
Find 0 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTAGGATTAATAAAATT+AGG | - | 32590:13989-14008 | MS.gene58472:intergenic | 10.0% |
!! | TAATAAAATTAGGATAATCA+GGG | - | 32590:13979-13998 | MS.gene58472:intergenic | 15.0% |
!! | TTAATAAAATTAGGATAATC+AGG | - | 32590:13980-13999 | MS.gene58472:intergenic | 15.0% |
!! | AGAATAAGATTGATTATTGT+AGG | + | 32590:14092-14111 | MS.gene58472:CDS | 20.0% |
!! | ATTATTATTTGCATGGTTAT+TGG | + | 32590:14590-14609 | MS.gene58472:CDS | 20.0% |
!! | TTATTATTTGCATGGTTATT+GGG | + | 32590:14591-14610 | MS.gene58472:CDS | 20.0% |
! | GAGAATCATTATTATTTGCA+TGG | + | 32590:14583-14602 | MS.gene58472:CDS | 25.0% |
! | TATTATTTGCATGGTTATTG+GGG | + | 32590:14592-14611 | MS.gene58472:CDS | 25.0% |
! | TGATTTATGATGAGAAGAAT+TGG | + | 32590:14335-14354 | MS.gene58472:CDS | 25.0% |
!! | GATTGAGATTTTCTATAACA+TGG | + | 32590:14123-14142 | MS.gene58472:CDS | 25.0% |
AACAAATAATGATCACCAAC+AGG | - | 32590:14061-14080 | MS.gene58472:intergenic | 30.0% | |
AACAATAGCTTCCTAATCAA+AGG | - | 32590:14190-14209 | MS.gene58472:intergenic | 30.0% | |
AATCAGATATTGCAGATGTA+TGG | + | 32590:14787-14806 | MS.gene58472:CDS | 30.0% | |
ACTTGATATTCTTGATGCTT+GGG | + | 32590:14405-14424 | MS.gene58472:CDS | 30.0% | |
AGTTCATCTTTAACATCAAG+AGG | - | 32590:14874-14893 | MS.gene58472:intergenic | 30.0% | |
ATCTGCTATGGTTTATTTGT+TGG | + | 32590:14522-14541 | MS.gene58472:CDS | 30.0% | |
ATGATTGAGAATTATCATCC+TGG | + | 32590:14640-14659 | MS.gene58472:CDS | 30.0% | |
ATTATTTGCATGGTTATTGG+GGG | + | 32590:14593-14612 | MS.gene58472:CDS | 30.0% | |
ATTGATTATTGTAGGCTTCA+TGG | + | 32590:14100-14119 | MS.gene58472:CDS | 30.0% | |
CTTGATGTTAAAGATGAACT+TGG | + | 32590:14874-14893 | MS.gene58472:CDS | 30.0% | |
TATGATGAGAAGAATTGGAT+TGG | + | 32590:14340-14359 | MS.gene58472:CDS | 30.0% | |
TGATGCTATGTTTACTGATA+TGG | + | 32590:14249-14268 | MS.gene58472:CDS | 30.0% | |
TTGATTATTGTAGGCTTCAT+GGG | + | 32590:14101-14120 | MS.gene58472:CDS | 30.0% | |
! | ATAATTTTGTGATGCATGGT+TGG | + | 32590:14305-14324 | MS.gene58472:CDS | 30.0% |
! | ATGGATCGTGCTTATAATTT+TGG | + | 32590:14760-14779 | MS.gene58472:CDS | 30.0% |
! | GATCATAATTTTGTGATGCA+TGG | + | 32590:14301-14320 | MS.gene58472:CDS | 30.0% |
!! | AATTGGATTGGTTTGAATAC+TGG | + | 32590:14352-14371 | MS.gene58472:CDS | 30.0% |
!!! | ATACTGGAAGTTTTTTGTTG+AGG | + | 32590:14368-14387 | MS.gene58472:CDS | 30.0% |
AAAAGAACACGTGGCTTATT+AGG | - | 32590:14004-14023 | MS.gene58471:intergenic | 35.0% | |
ATTGAAATTCTTCGAGAACG+CGG | - | 32590:13787-13806 | MS.gene58472:intergenic | 35.0% | |
CACTTGATATTCTTGATGCT+TGG | + | 32590:14404-14423 | MS.gene58472:CDS | 35.0% | |
TAATCACCAAATTTCCCACA+AGG | - | 32590:14715-14734 | MS.gene58472:intergenic | 35.0% | |
TGTAAACCTTGTGGGAAATT+TGG | + | 32590:14706-14725 | MS.gene58472:CDS | 35.0% | |
! | ATCCTGAAGTTGAGTTTTTG+TGG | + | 32590:14215-14234 | MS.gene58472:CDS | 35.0% |
! | ATGGTTTATTTGTTGGCAAC+TGG | + | 32590:14529-14548 | MS.gene58472:CDS | 35.0% |
! | GAGAATTATCATCCTGGTTT+TGG | + | 32590:14646-14665 | MS.gene58472:CDS | 35.0% |
! | TGGTTTATTTGTTGGCAACT+GGG | + | 32590:14530-14549 | MS.gene58472:CDS | 35.0% |
! | TTTTGTTGAGGAATTGTCAG+TGG | + | 32590:14380-14399 | MS.gene58472:CDS | 35.0% |
!! | AACTTGATAGCTTTGAAAGC+AGG | - | 32590:14910-14929 | MS.gene58472:intergenic | 35.0% |
!! | TGAGAGGTGTTTGAAACAAA+TGG | + | 32590:14741-14760 | MS.gene58472:CDS | 35.0% |
!!! | ATTTTGGGACCAAGTGTATA+AGG | - | 32590:13914-13933 | MS.gene58472:intergenic | 35.0% |
!!! | GTTATCGTTGTTGTTTTCTG+TGG | - | 32590:13810-13829 | MS.gene58472:intergenic | 35.0% |
AAACCGTGTGAAAATCCTGT+TGG | + | 32590:14043-14062 | MS.gene58472:CDS | 40.0% | |
AAGCTGGGAAGATTCTTACT+AGG | + | 32590:14461-14480 | MS.gene58472:CDS | 40.0% | |
AGCAGATGATCAATCTGCTA+TGG | + | 32590:14510-14529 | MS.gene58472:CDS | 40.0% | |
AGCTGGGAAGATTCTTACTA+GGG | + | 32590:14462-14481 | MS.gene58472:CDS | 40.0% | |
ATCCTCAAAGATGAAGAAGC+TGG | + | 32590:13860-13879 | MS.gene58472:CDS | 40.0% | |
CACCACAAAAACTCAACTTC+AGG | - | 32590:14220-14239 | MS.gene58472:intergenic | 40.0% | |
CCAGTAACTAAAAGAACACG+TGG | - | 32590:14013-14032 | MS.gene58472:intergenic | 40.0% | |
GATTGTCGAGATATCGAAAG+TGG | - | 32590:13843-13862 | MS.gene58472:intergenic | 40.0% | |
GGCTTTACTTGATGCTGAAA+TGG | + | 32590:14144-14163 | MS.gene58472:CDS | 40.0% | |
GTAGAAGAGTGAAGAGAGTT+AGG | + | 32590:14833-14852 | MS.gene58472:CDS | 40.0% | |
GTTTACTGATATGGCTTTCG+AGG | + | 32590:14258-14277 | MS.gene58472:CDS | 40.0% | |
GTTTCAAACACCTCTCAACA+GGG | - | 32590:14738-14757 | MS.gene58472:intergenic | 40.0% | |
TAGGGAGTTAAAGAATCGAC+CGG | + | 32590:14480-14499 | MS.gene58472:CDS | 40.0% | |
TCATCTCTAACCTTCCCTTT+AGG | - | 32590:14442-14461 | MS.gene58472:intergenic | 40.0% | |
TGAACGTTGTTCATCCCAAT+CGG | - | 32590:13939-13958 | MS.gene58472:intergenic | 40.0% | |
TGATCATCTGCTTCGAAAAC+CGG | - | 32590:14502-14521 | MS.gene58472:intergenic | 40.0% | |
TGTTTCAAACACCTCTCAAC+AGG | - | 32590:14739-14758 | MS.gene58472:intergenic | 40.0% | |
TTACTTGATGCTGAAATGGC+TGG | + | 32590:14148-14167 | MS.gene58472:CDS | 40.0% | |
! | ACAGGATTTTCACACGGTTT+AGG | - | 32590:14043-14062 | MS.gene58472:intergenic | 40.0% |
! | CTGAAGTTGAGTTTTTGTGG+TGG | + | 32590:14218-14237 | MS.gene58472:CDS | 40.0% |
! | TCACCAACAGGATTTTCACA+CGG | - | 32590:14049-14068 | MS.gene58472:intergenic | 40.0% |
! | TCATCCCAATCGGAGATTTT+GGG | - | 32590:13929-13948 | MS.gene58472:intergenic | 40.0% |
! | TTATTTGTTGGCAACTGGGA+GGG | + | 32590:14534-14553 | MS.gene58472:CDS | 40.0% |
! | TTCATCCCAATCGGAGATTT+TGG | - | 32590:13930-13949 | MS.gene58472:intergenic | 40.0% |
! | TTTATTTGTTGGCAACTGGG+AGG | + | 32590:14533-14552 | MS.gene58472:CDS | 40.0% |
!! | AGTTGAGTTTTTGTGGTGGA+TGG | + | 32590:14222-14241 | MS.gene58472:CDS | 40.0% |
!! | CATTGGTGACTCATTTTGTG+GGG | + | 32590:14683-14702 | MS.gene58472:CDS | 40.0% |
!! | CCACGTGTTCTTTTAGTTAC+TGG | + | 32590:14010-14029 | MS.gene58472:CDS | 40.0% |
!! | CCATTGGTGACTCATTTTGT+GGG | + | 32590:14682-14701 | MS.gene58472:CDS | 40.0% |
!!! | ATCCTGGTTTTGGTGATCAT+AGG | + | 32590:14656-14675 | MS.gene58472:CDS | 40.0% |
!!! | ATGCTGAAATGGCTGGTTTT+TGG | + | 32590:14155-14174 | MS.gene58472:CDS | 40.0% |
!!! | TGCTGAAATGGCTGGTTTTT+GGG | + | 32590:14156-14175 | MS.gene58472:CDS | 40.0% |
CACCAGCTTCTTCATCTTTG+AGG | - | 32590:13865-13884 | MS.gene58472:intergenic | 45.0% | |
CACCTATGATCACCAAAACC+AGG | - | 32590:14661-14680 | MS.gene58472:intergenic | 45.0% | |
CCAAACACGCCTTATACACT+TGG | + | 32590:13902-13921 | MS.gene58472:CDS | 45.0% | |
CCAAGTGTATAAGGCGTGTT+TGG | - | 32590:13905-13924 | MS.gene58472:intergenic | 45.0% | |
CCCACAAAATGAGTCACCAA+TGG | - | 32590:14685-14704 | MS.gene58472:intergenic | 45.0% | |
GGAAGGTTAGAGATGAAGCT+GGG | + | 32590:14446-14465 | MS.gene58472:CDS | 45.0% | |
GGGCTAAGCTTCCTTTGATT+AGG | + | 32590:14176-14195 | MS.gene58472:CDS | 45.0% | |
TGATCCTTATAACGCTCCCA+CGG | - | 32590:14286-14305 | MS.gene58472:intergenic | 45.0% | |
TGGTCCCAAAATCTCCGATT+GGG | + | 32590:13922-13941 | MS.gene58472:CDS | 45.0% | |
TTGGTCCCAAAATCTCCGAT+TGG | + | 32590:13921-13940 | MS.gene58472:CDS | 45.0% | |
TTGTGGGGTGTAAACCTTGT+GGG | + | 32590:14698-14717 | MS.gene58472:CDS | 45.0% | |
TTTGTGGGGTGTAAACCTTG+TGG | + | 32590:14697-14716 | MS.gene58472:CDS | 45.0% | |
! | GCATGGTTATTGGGGGATTT+TGG | + | 32590:14600-14619 | MS.gene58472:CDS | 45.0% |
! | TTGGTGATTACCCTGTTGAG+AGG | + | 32590:14725-14744 | MS.gene58472:CDS | 45.0% |
!! | ATCTCGTTGAGGTCTTGTTC+TGG | - | 32590:13722-13741 | MS.gene58472:intergenic | 45.0% |
!! | GCCATTGGTGACTCATTTTG+TGG | + | 32590:14681-14700 | MS.gene58472:CDS | 45.0% |
!! | TTCTGGAGTTCCGAATTTGC+CGG | - | 32590:13705-13724 | MS.gene58472:intergenic | 45.0% |
!!! | CTGGTTTTGGTGATCATAGG+TGG | + | 32590:14659-14678 | MS.gene58472:CDS | 45.0% |
AATTCTTCGAGAACGCGGTG+AGG | - | 32590:13782-13801 | MS.gene58472:intergenic | 50.0% | |
ACCTTCCCTTTAGGTCCCAT+TGG | - | 32590:14433-14452 | MS.gene58472:intergenic | 50.0% | |
ATATGGCTTTCGAGGTTCCG+TGG | + | 32590:14266-14285 | MS.gene58472:CDS | 50.0% | |
CACGTGAGTAGAGCTGTTGA+CGG | - | 32590:13745-13764 | MS.gene58472:intergenic | 50.0% | |
CTTGATGCTTGGGCTCCAAT+GGG | + | 32590:14415-14434 | MS.gene58472:CDS | 50.0% | |
GGGAAGGTTAGAGATGAAGC+TGG | + | 32590:14445-14464 | MS.gene58472:CDS | 50.0% | |
GGGATGAACAACGTTCATCG+TGG | + | 32590:13942-13961 | MS.gene58472:CDS | 50.0% | |
TATGGCTTTCGAGGTTCCGT+GGG | + | 32590:14267-14286 | MS.gene58472:CDS | 50.0% | |
TCCAATGGGACCTAAAGGGA+AGG | + | 32590:14429-14448 | MS.gene58472:CDS | 50.0% | |
TCTTGATGCTTGGGCTCCAA+TGG | + | 32590:14414-14433 | MS.gene58472:CDS | 50.0% | |
TGGTGATCATAGGTGGCCAT+TGG | + | 32590:14666-14685 | MS.gene58472:CDS | 50.0% | |
AACAGCTCTACTCACGTGGC+CGG | + | 32590:13747-13766 | MS.gene58472:CDS | 55.0% | |
ATCGTCCTCCGTGGCACTAT+CGG | + | 32590:13677-13696 | MS.gene58472:CDS | 55.0% | |
CGTCAACAGCTCTACTCACG+TGG | + | 32590:13743-13762 | MS.gene58472:CDS | 55.0% | |
GCAACTGGGAGGGAACAATG+GGG | + | 32590:14544-14563 | MS.gene58472:CDS | 55.0% | |
GGCAACTGGGAGGGAACAAT+GGG | + | 32590:14543-14562 | MS.gene58472:CDS | 55.0% | |
GGGCTCCAATGGGACCTAAA+GGG | + | 32590:14425-14444 | MS.gene58472:CDS | 55.0% | |
GGTGAGGAAGAGACAGAGGA+AGG | - | 32590:13654-13673 | MS.gene58472:intergenic | 55.0% | |
TGACGGTGAGGAAGAGACAG+AGG | - | 32590:13658-13677 | MS.gene58472:intergenic | 55.0% | |
TGGCAACTGGGAGGGAACAA+TGG | + | 32590:14542-14561 | MS.gene58472:CDS | 55.0% | |
TGGGCTCCAATGGGACCTAA+AGG | + | 32590:14424-14443 | MS.gene58472:CDS | 55.0% | |
! | GCTGTTGACGGATCTCGTTG+AGG | - | 32590:13733-13752 | MS.gene58472:intergenic | 55.0% |
!! | ACTATCGGCGCCGGCAAATT+CGG | + | 32590:13692-13711 | MS.gene58472:CDS | 55.0% |
!! | GGTTCCGTGGGAGCGTTATA+AGG | + | 32590:14279-14298 | MS.gene58472:CDS | 55.0% |
ACTGGGAGGGAACAATGGGG+TGG | + | 32590:14547-14566 | MS.gene58472:CDS | 60.0% | |
AGTGCCACGGAGGACGATGA+CGG | - | 32590:13675-13694 | MS.gene58472:intergenic | 60.0% | |
CTGGGAGGGAACAATGGGGT+GGG | + | 32590:14548-14567 | MS.gene58472:CDS | 60.0% | |
GGAATGCGCGCTGCATCTGA+CGG | - | 32590:13616-13635 | MS.gene58472:intergenic | 60.0% | |
!! | AGAGGAAGGTGAGAGTGCCG+CGG | - | 32590:13640-13659 | MS.gene58472:intergenic | 60.0% |
CGCGCTGCATCTGACGGAGA+CGG | - | 32590:13610-13629 | MS.gene58472:intergenic | 65.0% | |
CTCACCGTCATCGTCCTCCG+TGG | + | 32590:13668-13687 | MS.gene58472:CDS | 65.0% | |
! | CACGGAGGACGATGACGGTG+AGG | - | 32590:13670-13689 | MS.gene58472:intergenic | 65.0% |
ATGCAGCGCGCATTCCGCCG+CGG | + | 32590:13620-13639 | MS.gene58472:CDS | 70.0% | |
CTCCGTGGCACTATCGGCGC+CGG | + | 32590:13683-13702 | MS.gene58472:CDS | 70.0% | |
!! | GGAAGGTGAGAGTGCCGCGG+CGG | - | 32590:13637-13656 | MS.gene58472:intergenic | 70.0% |
!! | TGCCGGCGCCGATAGTGCCA+CGG | - | 32590:13688-13707 | MS.gene58472:intergenic | 70.0% |
CGCGGTGAGGCTCAACGCGC+CGG | - | 32590:13769-13788 | MS.gene58472:intergenic | 75.0% | |
!! | CGGCGCCGATAGTGCCACGG+AGG | - | 32590:13685-13704 | MS.gene58472:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
32590 | gene | 13581 | 14945 | 13581 | ID=MS.gene58472 |
32590 | mRNA | 13581 | 14945 | 13581 | ID=MS.gene58472.t1;Parent=MS.gene58472 |
32590 | exon | 13581 | 14945 | 13581 | ID=MS.gene58472.t1.exon1;Parent=MS.gene58472.t1 |
32590 | CDS | 13581 | 14945 | 13581 | ID=cds.MS.gene58472.t1;Parent=MS.gene58472.t1 |
Gene Sequence |
Protein sequence |