AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58472


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58472.t1 MTR_4g119880 98.899 454 5 0 1 454 1 454 0.0 943
MS.gene58472.t1 MTR_7g108675 78.373 467 87 3 1 454 1 466 0.0 754
MS.gene58472.t1 MTR_8g058553 78.072 415 77 3 1 402 1 414 0.0 669
MS.gene58472.t1 MTR_3g037340 58.469 431 154 4 10 440 36 441 0.0 546
MS.gene58472.t1 MTR_4g108940 57.240 442 165 4 8 449 28 445 0.0 545
MS.gene58472.t1 MTR_5g015260 42.526 388 181 7 79 431 66 446 8.83e-111 334
MS.gene58472.t1 MTR_4g097240 39.486 428 206 8 27 421 19 426 1.93e-108 328
MS.gene58472.t1 MTR_4g097230 43.466 352 160 6 107 424 69 415 1.37e-101 310
MS.gene58472.t1 MTR_4g108950 49.606 127 20 1 285 411 1 83 2.66e-33 121
MS.gene58472.t1 MTR_4g132910 82.051 39 7 0 357 395 582 620 2.16e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58472.t1 AT3G62720 77.874 461 93 4 1 454 1 459 0.0 763
MS.gene58472.t1 AT3G62720 77.874 461 93 4 1 454 1 459 0.0 763
MS.gene58472.t1 AT4G02500 79.914 463 81 3 1 454 1 460 0.0 761
MS.gene58472.t1 AT1G74380 58.879 428 153 5 13 440 42 446 0.0 553
MS.gene58472.t1 AT5G07720 58.469 431 155 5 10 440 39 445 0.0 551
MS.gene58472.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58472.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58472.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58472.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58472.t1 AT2G22900 42.120 349 159 5 107 417 89 432 1.92e-96 297
MS.gene58472.t1 AT4G37690 40.974 349 163 6 107 417 72 415 1.35e-94 292
MS.gene58472.t1 AT4G38310 44.444 108 56 2 107 213 13 117 6.40e-28 107

Find 0 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAGGATTAATAAAATT+AGG - 32590:13989-14008 MS.gene58472:intergenic 10.0%
!! TAATAAAATTAGGATAATCA+GGG - 32590:13979-13998 MS.gene58472:intergenic 15.0%
!! TTAATAAAATTAGGATAATC+AGG - 32590:13980-13999 MS.gene58472:intergenic 15.0%
!! AGAATAAGATTGATTATTGT+AGG + 32590:14092-14111 MS.gene58472:CDS 20.0%
!! ATTATTATTTGCATGGTTAT+TGG + 32590:14590-14609 MS.gene58472:CDS 20.0%
!! TTATTATTTGCATGGTTATT+GGG + 32590:14591-14610 MS.gene58472:CDS 20.0%
! GAGAATCATTATTATTTGCA+TGG + 32590:14583-14602 MS.gene58472:CDS 25.0%
! TATTATTTGCATGGTTATTG+GGG + 32590:14592-14611 MS.gene58472:CDS 25.0%
! TGATTTATGATGAGAAGAAT+TGG + 32590:14335-14354 MS.gene58472:CDS 25.0%
!! GATTGAGATTTTCTATAACA+TGG + 32590:14123-14142 MS.gene58472:CDS 25.0%
AACAAATAATGATCACCAAC+AGG - 32590:14061-14080 MS.gene58472:intergenic 30.0%
AACAATAGCTTCCTAATCAA+AGG - 32590:14190-14209 MS.gene58472:intergenic 30.0%
AATCAGATATTGCAGATGTA+TGG + 32590:14787-14806 MS.gene58472:CDS 30.0%
ACTTGATATTCTTGATGCTT+GGG + 32590:14405-14424 MS.gene58472:CDS 30.0%
AGTTCATCTTTAACATCAAG+AGG - 32590:14874-14893 MS.gene58472:intergenic 30.0%
ATCTGCTATGGTTTATTTGT+TGG + 32590:14522-14541 MS.gene58472:CDS 30.0%
ATGATTGAGAATTATCATCC+TGG + 32590:14640-14659 MS.gene58472:CDS 30.0%
ATTATTTGCATGGTTATTGG+GGG + 32590:14593-14612 MS.gene58472:CDS 30.0%
ATTGATTATTGTAGGCTTCA+TGG + 32590:14100-14119 MS.gene58472:CDS 30.0%
CTTGATGTTAAAGATGAACT+TGG + 32590:14874-14893 MS.gene58472:CDS 30.0%
TATGATGAGAAGAATTGGAT+TGG + 32590:14340-14359 MS.gene58472:CDS 30.0%
TGATGCTATGTTTACTGATA+TGG + 32590:14249-14268 MS.gene58472:CDS 30.0%
TTGATTATTGTAGGCTTCAT+GGG + 32590:14101-14120 MS.gene58472:CDS 30.0%
! ATAATTTTGTGATGCATGGT+TGG + 32590:14305-14324 MS.gene58472:CDS 30.0%
! ATGGATCGTGCTTATAATTT+TGG + 32590:14760-14779 MS.gene58472:CDS 30.0%
! GATCATAATTTTGTGATGCA+TGG + 32590:14301-14320 MS.gene58472:CDS 30.0%
!! AATTGGATTGGTTTGAATAC+TGG + 32590:14352-14371 MS.gene58472:CDS 30.0%
!!! ATACTGGAAGTTTTTTGTTG+AGG + 32590:14368-14387 MS.gene58472:CDS 30.0%
AAAAGAACACGTGGCTTATT+AGG - 32590:14004-14023 MS.gene58471:intergenic 35.0%
ATTGAAATTCTTCGAGAACG+CGG - 32590:13787-13806 MS.gene58472:intergenic 35.0%
CACTTGATATTCTTGATGCT+TGG + 32590:14404-14423 MS.gene58472:CDS 35.0%
TAATCACCAAATTTCCCACA+AGG - 32590:14715-14734 MS.gene58472:intergenic 35.0%
TGTAAACCTTGTGGGAAATT+TGG + 32590:14706-14725 MS.gene58472:CDS 35.0%
! ATCCTGAAGTTGAGTTTTTG+TGG + 32590:14215-14234 MS.gene58472:CDS 35.0%
! ATGGTTTATTTGTTGGCAAC+TGG + 32590:14529-14548 MS.gene58472:CDS 35.0%
! GAGAATTATCATCCTGGTTT+TGG + 32590:14646-14665 MS.gene58472:CDS 35.0%
! TGGTTTATTTGTTGGCAACT+GGG + 32590:14530-14549 MS.gene58472:CDS 35.0%
! TTTTGTTGAGGAATTGTCAG+TGG + 32590:14380-14399 MS.gene58472:CDS 35.0%
!! AACTTGATAGCTTTGAAAGC+AGG - 32590:14910-14929 MS.gene58472:intergenic 35.0%
!! TGAGAGGTGTTTGAAACAAA+TGG + 32590:14741-14760 MS.gene58472:CDS 35.0%
!!! ATTTTGGGACCAAGTGTATA+AGG - 32590:13914-13933 MS.gene58472:intergenic 35.0%
!!! GTTATCGTTGTTGTTTTCTG+TGG - 32590:13810-13829 MS.gene58472:intergenic 35.0%
AAACCGTGTGAAAATCCTGT+TGG + 32590:14043-14062 MS.gene58472:CDS 40.0%
AAGCTGGGAAGATTCTTACT+AGG + 32590:14461-14480 MS.gene58472:CDS 40.0%
AGCAGATGATCAATCTGCTA+TGG + 32590:14510-14529 MS.gene58472:CDS 40.0%
AGCTGGGAAGATTCTTACTA+GGG + 32590:14462-14481 MS.gene58472:CDS 40.0%
ATCCTCAAAGATGAAGAAGC+TGG + 32590:13860-13879 MS.gene58472:CDS 40.0%
CACCACAAAAACTCAACTTC+AGG - 32590:14220-14239 MS.gene58472:intergenic 40.0%
CCAGTAACTAAAAGAACACG+TGG - 32590:14013-14032 MS.gene58472:intergenic 40.0%
GATTGTCGAGATATCGAAAG+TGG - 32590:13843-13862 MS.gene58472:intergenic 40.0%
GGCTTTACTTGATGCTGAAA+TGG + 32590:14144-14163 MS.gene58472:CDS 40.0%
GTAGAAGAGTGAAGAGAGTT+AGG + 32590:14833-14852 MS.gene58472:CDS 40.0%
GTTTACTGATATGGCTTTCG+AGG + 32590:14258-14277 MS.gene58472:CDS 40.0%
GTTTCAAACACCTCTCAACA+GGG - 32590:14738-14757 MS.gene58472:intergenic 40.0%
TAGGGAGTTAAAGAATCGAC+CGG + 32590:14480-14499 MS.gene58472:CDS 40.0%
TCATCTCTAACCTTCCCTTT+AGG - 32590:14442-14461 MS.gene58472:intergenic 40.0%
TGAACGTTGTTCATCCCAAT+CGG - 32590:13939-13958 MS.gene58472:intergenic 40.0%
TGATCATCTGCTTCGAAAAC+CGG - 32590:14502-14521 MS.gene58472:intergenic 40.0%
TGTTTCAAACACCTCTCAAC+AGG - 32590:14739-14758 MS.gene58472:intergenic 40.0%
TTACTTGATGCTGAAATGGC+TGG + 32590:14148-14167 MS.gene58472:CDS 40.0%
! ACAGGATTTTCACACGGTTT+AGG - 32590:14043-14062 MS.gene58472:intergenic 40.0%
! CTGAAGTTGAGTTTTTGTGG+TGG + 32590:14218-14237 MS.gene58472:CDS 40.0%
! TCACCAACAGGATTTTCACA+CGG - 32590:14049-14068 MS.gene58472:intergenic 40.0%
! TCATCCCAATCGGAGATTTT+GGG - 32590:13929-13948 MS.gene58472:intergenic 40.0%
! TTATTTGTTGGCAACTGGGA+GGG + 32590:14534-14553 MS.gene58472:CDS 40.0%
! TTCATCCCAATCGGAGATTT+TGG - 32590:13930-13949 MS.gene58472:intergenic 40.0%
! TTTATTTGTTGGCAACTGGG+AGG + 32590:14533-14552 MS.gene58472:CDS 40.0%
!! AGTTGAGTTTTTGTGGTGGA+TGG + 32590:14222-14241 MS.gene58472:CDS 40.0%
!! CATTGGTGACTCATTTTGTG+GGG + 32590:14683-14702 MS.gene58472:CDS 40.0%
!! CCACGTGTTCTTTTAGTTAC+TGG + 32590:14010-14029 MS.gene58472:CDS 40.0%
!! CCATTGGTGACTCATTTTGT+GGG + 32590:14682-14701 MS.gene58472:CDS 40.0%
!!! ATCCTGGTTTTGGTGATCAT+AGG + 32590:14656-14675 MS.gene58472:CDS 40.0%
!!! ATGCTGAAATGGCTGGTTTT+TGG + 32590:14155-14174 MS.gene58472:CDS 40.0%
!!! TGCTGAAATGGCTGGTTTTT+GGG + 32590:14156-14175 MS.gene58472:CDS 40.0%
CACCAGCTTCTTCATCTTTG+AGG - 32590:13865-13884 MS.gene58472:intergenic 45.0%
CACCTATGATCACCAAAACC+AGG - 32590:14661-14680 MS.gene58472:intergenic 45.0%
CCAAACACGCCTTATACACT+TGG + 32590:13902-13921 MS.gene58472:CDS 45.0%
CCAAGTGTATAAGGCGTGTT+TGG - 32590:13905-13924 MS.gene58472:intergenic 45.0%
CCCACAAAATGAGTCACCAA+TGG - 32590:14685-14704 MS.gene58472:intergenic 45.0%
GGAAGGTTAGAGATGAAGCT+GGG + 32590:14446-14465 MS.gene58472:CDS 45.0%
GGGCTAAGCTTCCTTTGATT+AGG + 32590:14176-14195 MS.gene58472:CDS 45.0%
TGATCCTTATAACGCTCCCA+CGG - 32590:14286-14305 MS.gene58472:intergenic 45.0%
TGGTCCCAAAATCTCCGATT+GGG + 32590:13922-13941 MS.gene58472:CDS 45.0%
TTGGTCCCAAAATCTCCGAT+TGG + 32590:13921-13940 MS.gene58472:CDS 45.0%
TTGTGGGGTGTAAACCTTGT+GGG + 32590:14698-14717 MS.gene58472:CDS 45.0%
TTTGTGGGGTGTAAACCTTG+TGG + 32590:14697-14716 MS.gene58472:CDS 45.0%
! GCATGGTTATTGGGGGATTT+TGG + 32590:14600-14619 MS.gene58472:CDS 45.0%
! TTGGTGATTACCCTGTTGAG+AGG + 32590:14725-14744 MS.gene58472:CDS 45.0%
!! ATCTCGTTGAGGTCTTGTTC+TGG - 32590:13722-13741 MS.gene58472:intergenic 45.0%
!! GCCATTGGTGACTCATTTTG+TGG + 32590:14681-14700 MS.gene58472:CDS 45.0%
!! TTCTGGAGTTCCGAATTTGC+CGG - 32590:13705-13724 MS.gene58472:intergenic 45.0%
!!! CTGGTTTTGGTGATCATAGG+TGG + 32590:14659-14678 MS.gene58472:CDS 45.0%
AATTCTTCGAGAACGCGGTG+AGG - 32590:13782-13801 MS.gene58472:intergenic 50.0%
ACCTTCCCTTTAGGTCCCAT+TGG - 32590:14433-14452 MS.gene58472:intergenic 50.0%
ATATGGCTTTCGAGGTTCCG+TGG + 32590:14266-14285 MS.gene58472:CDS 50.0%
CACGTGAGTAGAGCTGTTGA+CGG - 32590:13745-13764 MS.gene58472:intergenic 50.0%
CTTGATGCTTGGGCTCCAAT+GGG + 32590:14415-14434 MS.gene58472:CDS 50.0%
GGGAAGGTTAGAGATGAAGC+TGG + 32590:14445-14464 MS.gene58472:CDS 50.0%
GGGATGAACAACGTTCATCG+TGG + 32590:13942-13961 MS.gene58472:CDS 50.0%
TATGGCTTTCGAGGTTCCGT+GGG + 32590:14267-14286 MS.gene58472:CDS 50.0%
TCCAATGGGACCTAAAGGGA+AGG + 32590:14429-14448 MS.gene58472:CDS 50.0%
TCTTGATGCTTGGGCTCCAA+TGG + 32590:14414-14433 MS.gene58472:CDS 50.0%
TGGTGATCATAGGTGGCCAT+TGG + 32590:14666-14685 MS.gene58472:CDS 50.0%
AACAGCTCTACTCACGTGGC+CGG + 32590:13747-13766 MS.gene58472:CDS 55.0%
ATCGTCCTCCGTGGCACTAT+CGG + 32590:13677-13696 MS.gene58472:CDS 55.0%
CGTCAACAGCTCTACTCACG+TGG + 32590:13743-13762 MS.gene58472:CDS 55.0%
GCAACTGGGAGGGAACAATG+GGG + 32590:14544-14563 MS.gene58472:CDS 55.0%
GGCAACTGGGAGGGAACAAT+GGG + 32590:14543-14562 MS.gene58472:CDS 55.0%
GGGCTCCAATGGGACCTAAA+GGG + 32590:14425-14444 MS.gene58472:CDS 55.0%
GGTGAGGAAGAGACAGAGGA+AGG - 32590:13654-13673 MS.gene58472:intergenic 55.0%
TGACGGTGAGGAAGAGACAG+AGG - 32590:13658-13677 MS.gene58472:intergenic 55.0%
TGGCAACTGGGAGGGAACAA+TGG + 32590:14542-14561 MS.gene58472:CDS 55.0%
TGGGCTCCAATGGGACCTAA+AGG + 32590:14424-14443 MS.gene58472:CDS 55.0%
! GCTGTTGACGGATCTCGTTG+AGG - 32590:13733-13752 MS.gene58472:intergenic 55.0%
!! ACTATCGGCGCCGGCAAATT+CGG + 32590:13692-13711 MS.gene58472:CDS 55.0%
!! GGTTCCGTGGGAGCGTTATA+AGG + 32590:14279-14298 MS.gene58472:CDS 55.0%
ACTGGGAGGGAACAATGGGG+TGG + 32590:14547-14566 MS.gene58472:CDS 60.0%
AGTGCCACGGAGGACGATGA+CGG - 32590:13675-13694 MS.gene58472:intergenic 60.0%
CTGGGAGGGAACAATGGGGT+GGG + 32590:14548-14567 MS.gene58472:CDS 60.0%
GGAATGCGCGCTGCATCTGA+CGG - 32590:13616-13635 MS.gene58472:intergenic 60.0%
!! AGAGGAAGGTGAGAGTGCCG+CGG - 32590:13640-13659 MS.gene58472:intergenic 60.0%
CGCGCTGCATCTGACGGAGA+CGG - 32590:13610-13629 MS.gene58472:intergenic 65.0%
CTCACCGTCATCGTCCTCCG+TGG + 32590:13668-13687 MS.gene58472:CDS 65.0%
! CACGGAGGACGATGACGGTG+AGG - 32590:13670-13689 MS.gene58472:intergenic 65.0%
ATGCAGCGCGCATTCCGCCG+CGG + 32590:13620-13639 MS.gene58472:CDS 70.0%
CTCCGTGGCACTATCGGCGC+CGG + 32590:13683-13702 MS.gene58472:CDS 70.0%
!! GGAAGGTGAGAGTGCCGCGG+CGG - 32590:13637-13656 MS.gene58472:intergenic 70.0%
!! TGCCGGCGCCGATAGTGCCA+CGG - 32590:13688-13707 MS.gene58472:intergenic 70.0%
CGCGGTGAGGCTCAACGCGC+CGG - 32590:13769-13788 MS.gene58472:intergenic 75.0%
!! CGGCGCCGATAGTGCCACGG+AGG - 32590:13685-13704 MS.gene58472:intergenic 75.0%


Chromosome Type Strat End Strand Name
32590 gene 13581 14945 13581 ID=MS.gene58472
32590 mRNA 13581 14945 13581 ID=MS.gene58472.t1;Parent=MS.gene58472
32590 exon 13581 14945 13581 ID=MS.gene58472.t1.exon1;Parent=MS.gene58472.t1
32590 CDS 13581 14945 13581 ID=cds.MS.gene58472.t1;Parent=MS.gene58472.t1
Gene Sequence

>MS.gene58472

ATGCTGGAGCGGTGTCTCGGATCTCGCCGTCTCCGTCAGATGCAGCGCGCATTCCGCCGCGGCACTCTCACCTTCCTCTGTCTCTTCCTCACCGTCATCGTCCTCCGTGGCACTATCGGCGCCGGCAAATTCGGAACTCCAGAACAAGACCTCAACGAGATCCGTCAACAGCTCTACTCACGTGGCCGGCGCGTTGAGCCTCACCGCGTTCTCGAAGAATTTCAATCCACAGAAAACAACAACGATAACAACAACTACGCCACTTTCGATATCTCGACAATCCTCAAAGATGAAGAAGCTGGTGATGATGAAAAACGCGATCCAAACACGCCTTATACACTTGGTCCCAAAATCTCCGATTGGGATGAACAACGTTCATCGTGGCTGAGTAACAACCCTGATTATCCTAATTTTATTAATCCTAATAAGCCACGTGTTCTTTTAGTTACTGGTTCTTCACCTAAACCGTGTGAAAATCCTGTTGGTGATCATTATTTGTTGAAATCAATTAAGAATAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTTTCTATAACATGGCTTTACTTGATGCTGAAATGGCTGGTTTTTGGGCTAAGCTTCCTTTGATTAGGAAGCTATTGTTGTCGCATCCTGAAGTTGAGTTTTTGTGGTGGATGGATAGTGATGCTATGTTTACTGATATGGCTTTCGAGGTTCCGTGGGAGCGTTATAAGGATCATAATTTTGTGATGCATGGTTGGAATGAGATGATTTATGATGAGAAGAATTGGATTGGTTTGAATACTGGAAGTTTTTTGTTGAGGAATTGTCAGTGGTCACTTGATATTCTTGATGCTTGGGCTCCAATGGGACCTAAAGGGAAGGTTAGAGATGAAGCTGGGAAGATTCTTACTAGGGAGTTAAAGAATCGACCGGTTTTCGAAGCAGATGATCAATCTGCTATGGTTTATTTGTTGGCAACTGGGAGGGAACAATGGGGTGGGAAAGTTTATCTTGAGAATCATTATTATTTGCATGGTTATTGGGGGATTTTGGTTGATAGATATGAAGAGATGATTGAGAATTATCATCCTGGTTTTGGTGATCATAGGTGGCCATTGGTGACTCATTTTGTGGGGTGTAAACCTTGTGGGAAATTTGGTGATTACCCTGTTGAGAGGTGTTTGAAACAAATGGATCGTGCTTATAATTTTGGTGATAATCAGATATTGCAGATGTATGGTTTTACTCATAAGTCACTTGCTAGTAGAAGAGTGAAGAGAGTTAGGAATGAGAGTAGTAATCCTCTTGATGTTAAAGATGAACTTGGATTGCTTCATCCTGCTTTCAAAGCTATCAAGTTGCCAACTTCTTCTTGA

Protein sequence

>MS.gene58472.t1

MLERCLGSRRLRQMQRAFRRGTLTFLCLFLTVIVLRGTIGAGKFGTPEQDLNEIRQQLYSRGRRVEPHRVLEEFQSTENNNDNNNYATFDISTILKDEEAGDDEKRDPNTPYTLGPKISDWDEQRSSWLSNNPDYPNFINPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNFVMHGWNEMIYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDEAGKILTRELKNRPVFEADDQSAMVYLLATGREQWGGKVYLENHYYLHGYWGILVDRYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLASRRVKRVRNESSNPLDVKDELGLLHPAFKAIKLPTSS