Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58747.t1 | XP_024636653.1 | 99 | 203 | 2 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58747.t1 | Q1RMX9 | 35.4 | 144 | 90 | 3 | 50 | 193 | 62 | 202 | 1.8e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58747.t1 | A0A072V218 | 99.0 | 196 | 2 | 0 | 1 | 196 | 1 | 196 | 3.5e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056403 | MS.gene58747 | 0.818979 | 1.48E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene58747 | 0.823631 | 1.25E-53 | -1.69E-46 |
| MS.gene05689 | MS.gene58747 | 0.800406 | 1.46E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene58747 | 0.824782 | 6.70E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58747.t1 | MTR_4g116980 | 98.980 | 196 | 2 | 0 | 1 | 196 | 1 | 196 | 1.38e-146 | 407 |
| MS.gene58747.t1 | MTR_4g008540 | 62.573 | 171 | 64 | 0 | 26 | 196 | 26 | 196 | 7.51e-80 | 238 |
| MS.gene58747.t1 | MTR_2g064415 | 29.375 | 160 | 111 | 2 | 36 | 195 | 58 | 215 | 3.12e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58747.t1 | AT1G15860 | 60.234 | 171 | 68 | 0 | 26 | 196 | 26 | 196 | 5.19e-75 | 226 |
| MS.gene58747.t1 | AT1G15860 | 60.234 | 171 | 68 | 0 | 26 | 196 | 26 | 196 | 5.19e-75 | 226 |
| MS.gene58747.t1 | AT1G15860 | 57.222 | 180 | 68 | 1 | 26 | 196 | 26 | 205 | 7.82e-72 | 218 |
| MS.gene58747.t1 | AT3G12760 | 26.506 | 166 | 120 | 2 | 28 | 193 | 51 | 214 | 8.56e-20 | 84.7 |
Find 44 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGTGTACTATTGTTC+TGG | 0.261877 | 8.1:-10182912 | MS.gene58747:CDS |
| CGAAGAGGTCTCAAATGTTT+AGG | 0.271622 | 8.1:-10183348 | MS.gene58747:CDS |
| TCTTAAACAGTCCTTATATA+TGG | 0.274026 | 8.1:+10182041 | None:intergenic |
| TTAGCGCTCTGTATTCATTC+TGG | 0.293347 | 8.1:+10182423 | None:intergenic |
| AAACTTAAGTCCCATATATA+AGG | 0.343017 | 8.1:-10182052 | None:intergenic |
| GAAGAGGTCTCAAATGTTTA+GGG | 0.370024 | 8.1:-10183347 | MS.gene58747:CDS |
| CAAAGTGCTTCAATCCCATC+TGG | 0.375256 | 8.1:+10184577 | None:intergenic |
| TCCTCGCTCCAAACGAAAAC+CGG | 0.388522 | 8.1:-10186497 | MS.gene58747:CDS |
| GTAGTTGTTCTCTTCGTCTT+CGG | 0.413741 | 8.1:+10186228 | None:intergenic |
| ATTGACTTGAGAAGGGAATT+CGG | 0.422632 | 8.1:+10182886 | None:intergenic |
| GTTTGGTTGGTCAGCCCAGA+TGG | 0.424353 | 8.1:-10184592 | MS.gene58747:intron |
| CTTTCTTTGAATAGGATGAA+TGG | 0.426861 | 8.1:-10183371 | MS.gene58747:intron |
| GTTAATAAATTGACTTGAGA+AGG | 0.457330 | 8.1:+10182878 | None:intergenic |
| AGCATACACAAATAAATCAT+TGG | 0.458640 | 8.1:-10186172 | MS.gene58747:CDS |
| ACGTCAGTGGTTGGTGGGAC+CGG | 0.458694 | 8.1:+10186478 | None:intergenic |
| GAAAATGAATGCTGAAAAGC+AGG | 0.462030 | 8.1:-10184412 | MS.gene58747:CDS |
| CTTAAACAGTCCTTATATAT+GGG | 0.474356 | 8.1:+10182042 | None:intergenic |
| GAGCTGTGTACTATTGTTCT+GGG | 0.478973 | 8.1:-10182911 | MS.gene58747:CDS |
| AATAGTACACAGCTCACATA+TGG | 0.491701 | 8.1:+10182919 | None:intergenic |
| ATGTGGACCATACAGATGTT+AGG | 0.497304 | 8.1:-10184543 | MS.gene58747:CDS |
| GCATTCAAATATTGCCTCAC+AGG | 0.503317 | 8.1:-10183104 | MS.gene58747:intron |
| TTTATTAACAGAGTATCTAA+AGG | 0.509114 | 8.1:-10182864 | MS.gene58747:intron |
| TTTGGTTGGTCAGCCCAGAT+GGG | 0.527896 | 8.1:-10184591 | MS.gene58747:intron |
| TCAGCATCCTAACATCTGTA+TGG | 0.536665 | 8.1:+10184536 | None:intergenic |
| TGAAGAAGTACCGGTACGAA+TGG | 0.538292 | 8.1:+10186447 | None:intergenic |
| TTAATAAATTGACTTGAGAA+GGG | 0.545327 | 8.1:+10182879 | None:intergenic |
| GAGCGCTAACAATGGATCAC+TGG | 0.566518 | 8.1:-10182409 | MS.gene58747:CDS |
| TTAGGATGCTGATACTTGCT+TGG | 0.574546 | 8.1:-10184525 | MS.gene58747:intron |
| AATCGACGTCAGTGGTTGGT+GGG | 0.579588 | 8.1:+10186473 | None:intergenic |
| AATGAATGGACTGAAGAAAG+AGG | 0.588217 | 8.1:-10183295 | MS.gene58747:intron |
| GTCGATTCTTCCATTCGTAC+CGG | 0.588803 | 8.1:-10186457 | MS.gene58747:intron |
| GAAGAATCGACGTCAGTGGT+TGG | 0.593053 | 8.1:+10186469 | None:intergenic |
| TGAATACAGAGCGCTAACAA+TGG | 0.593788 | 8.1:-10182417 | MS.gene58747:CDS |
| AATGGAAGAATCGACGTCAG+TGG | 0.616260 | 8.1:+10186465 | None:intergenic |
| AAAGTGCTTCAATCCCATCT+GGG | 0.617158 | 8.1:+10184578 | None:intergenic |
| TACTTTCAGAGGATAAGCAA+AGG | 0.624973 | 8.1:-10182958 | MS.gene58747:intron |
| GAATCGACGTCAGTGGTTGG+TGG | 0.627655 | 8.1:+10186472 | None:intergenic |
| CAACTACAAAGCAATTTGAA+CGG | 0.631232 | 8.1:-10186212 | MS.gene58747:CDS |
| GAATAGGATGAATGGCGAAG+AGG | 0.658803 | 8.1:-10183363 | MS.gene58747:intron |
| AAAATGAATGCTGAAAAGCA+GGG | 0.662496 | 8.1:-10184411 | MS.gene58747:CDS |
| GAGGCAATATTTGAATGCAT+AGG | 0.663309 | 8.1:+10183109 | None:intergenic |
| GAAGACTAAGCTTACCTGTG+AGG | 0.669251 | 8.1:+10183090 | None:intergenic |
| AAGAGGTCTCAAATGTTTAG+GGG | 0.690794 | 8.1:-10183346 | MS.gene58747:CDS |
| ACTTTGTAAAGATGTGAATG+TGG | 0.741891 | 8.1:-10184560 | MS.gene58747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAATTTTTAATTTAT+TGG | - | chr8.1:10182205-10182224 | MS.gene58747:intron | 0.0% |
| !! | TAGAAAATAATTTATGAATA+CGG | + | chr8.1:10186090-10186109 | None:intergenic | 10.0% |
| !!! | ATTCATAAATTATTTTCTAA+TGG | - | chr8.1:10186091-10186110 | MS.gene58747:intron | 10.0% |
| !!! | TCATTTTTTGAATTTTTTAT+CGG | - | chr8.1:10183832-10183851 | MS.gene58747:intron | 10.0% |
| !! | AAATTAAAAAAAGCAATGAA+TGG | - | chr8.1:10185247-10185266 | MS.gene58747:intron | 15.0% |
| !!! | CAATTTATTTCCTTTTTTTT+TGG | - | chr8.1:10185380-10185399 | MS.gene58747:intron | 15.0% |
| !!! | TCATTGCTTTTTTTAATTTT+GGG | + | chr8.1:10185246-10185265 | None:intergenic | 15.0% |
| !!! | TTCATTGCTTTTTTTAATTT+TGG | + | chr8.1:10185247-10185266 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTGTATGTAATTT+GGG | - | chr8.1:10185788-10185807 | MS.gene58747:intron | 15.0% |
| !! | AAATTCACAAATCATAAGAA+TGG | + | chr8.1:10186420-10186439 | None:intergenic | 20.0% |
| !! | CTTAAAATATTGAGATATTC+AGG | - | chr8.1:10184219-10184238 | MS.gene58747:intron | 20.0% |
| !! | TTGAGATTAGCAATTATTTA+CGG | - | chr8.1:10185334-10185353 | MS.gene58747:intron | 20.0% |
| !!! | AATGCTTTATACTTTTTGTT+TGG | - | chr8.1:10183947-10183966 | MS.gene58747:intron | 20.0% |
| !!! | CTTTTAAGTTGTATGTAATT+TGG | - | chr8.1:10185787-10185806 | MS.gene58747:intron | 20.0% |
| !!! | TATACAAAGTACTGTTAAAT+AGG | - | chr8.1:10184627-10184646 | MS.gene58747:intron | 20.0% |
| !!! | TTAATAAATTGACTTGAGAA+GGG | + | chr8.1:10185680-10185699 | None:intergenic | 20.0% |
| !!! | TTCATAAGTATTTTATAGCT+GGG | + | chr8.1:10185298-10185317 | None:intergenic | 20.0% |
| !!! | TTCTAATGATAAAAAGTACA+AGG | + | chr8.1:10186352-10186371 | None:intergenic | 20.0% |
| !!! | TTTATTAACAGAGTATCTAA+AGG | - | chr8.1:10185692-10185711 | MS.gene58747:intron | 20.0% |
| !!! | TTTTTATCGGTTTTTTAAAG+AGG | - | chr8.1:10186175-10186194 | MS.gene58747:CDS | 20.0% |
| !!! | TTTTTCCTAATAGATGAAAA+AGG | + | chr8.1:10186487-10186506 | None:intergenic | 20.0% |
| ! | AAACTTAAGTCCCATATATA+AGG | - | chr8.1:10186504-10186523 | MS.gene58747:CDS | 25.0% |
| ! | AAAGAGAAGAGTTAACAATA+CGG | - | chr8.1:10184967-10184986 | MS.gene58747:intron | 25.0% |
| ! | AACTTAAGTCCCATATATAA+GGG | - | chr8.1:10186505-10186524 | MS.gene58747:CDS | 25.0% |
| ! | AATTGCATCAAAACCTTATT+AGG | + | chr8.1:10185365-10185384 | None:intergenic | 25.0% |
| ! | AGAATCAATCTAAGTGAAAT+AGG | - | chr8.1:10184849-10184868 | MS.gene58747:intron | 25.0% |
| ! | AGCATACACAAATAAATCAT+TGG | - | chr8.1:10182384-10182403 | MS.gene58747:CDS | 25.0% |
| ! | AGTTGAAAACAAAATGTACT+GGG | + | chr8.1:10186453-10186472 | None:intergenic | 25.0% |
| ! | ATCAGATAAAAACTCAAGAA+AGG | + | chr8.1:10186226-10186245 | None:intergenic | 25.0% |
| ! | ATTGCATCAAAACCTTATTA+GGG | + | chr8.1:10185364-10185383 | None:intergenic | 25.0% |
| ! | CACTAAATTCACAAATCATA+AGG | + | chr8.1:10186323-10186342 | None:intergenic | 25.0% |
| ! | CTTTCTTTCTTTCTTTGAAT+AGG | - | chr8.1:10185177-10185196 | MS.gene58747:intron | 25.0% |
| ! | TAAAAATCCTCAAAACTTTC+TGG | + | chr8.1:10185425-10185444 | None:intergenic | 25.0% |
| ! | TAATTTATGTCTTTCTTACC+AGG | - | chr8.1:10184122-10184141 | MS.gene58747:intron | 25.0% |
| ! | TCAAGTATCAACAGTATAAA+TGG | + | chr8.1:10185070-10185089 | None:intergenic | 25.0% |
| ! | TCAGATAAAAACTCAAGAAA+GGG | + | chr8.1:10186225-10186244 | None:intergenic | 25.0% |
| ! | TTACAACGAAAAATATTTCC+AGG | + | chr8.1:10185967-10185986 | None:intergenic | 25.0% |
| ! | TTATTAGTTGTTGTATGATC+TGG | - | chr8.1:10183720-10183739 | MS.gene58747:intron | 25.0% |
| !! | AAAAAATTTTCTACCAACCT+TGG | + | chr8.1:10184179-10184198 | None:intergenic | 25.0% |
| !! | AAAACGTACTTCAGTTTTTA+GGG | + | chr8.1:10184937-10184956 | None:intergenic | 25.0% |
| !! | AGAAAAATCTTTTCTATCAC+TGG | + | chr8.1:10186007-10186026 | None:intergenic | 25.0% |
| !! | ATCACTGGAGAAATTTTTAT+CGG | - | chr8.1:10186162-10186181 | MS.gene58747:CDS | 25.0% |
| !! | CTTCATAAGTATTTTATAGC+TGG | + | chr8.1:10185299-10185318 | None:intergenic | 25.0% |
| !! | TAAACTGATGATGATATGAA+TGG | + | chr8.1:10185097-10185116 | None:intergenic | 25.0% |
| !!! | AGTATAAATGGATTGTAGTT+TGG | + | chr8.1:10185058-10185077 | None:intergenic | 25.0% |
| !!! | ATGAAGTTTTGTTTATTTCG+TGG | - | chr8.1:10185917-10185936 | MS.gene58747:intron | 25.0% |
| !!! | ATTTCCTTTTTTTTTGGTCT+TGG | - | chr8.1:10185386-10185405 | MS.gene58747:intron | 25.0% |
| !!! | CTTTATACTTTTTGTTTGGT+TGG | - | chr8.1:10183951-10183970 | MS.gene58747:intron | 25.0% |
| !!! | GTTAATAAATTGACTTGAGA+AGG | + | chr8.1:10185681-10185700 | None:intergenic | 25.0% |
| !!! | GTTTACCTTTTTCATCTATT+AGG | - | chr8.1:10186479-10186498 | MS.gene58747:CDS | 25.0% |
| !!! | TGTGCTTGGATTATTTTTTA+TGG | - | chr8.1:10183893-10183912 | MS.gene58747:intron | 25.0% |
| !!! | TTCTAATGGTTGTTTTTTCT+TGG | - | chr8.1:10186105-10186124 | MS.gene58747:intron | 25.0% |
| !!! | TTTCCTTTTTTTTTGGTCTT+GGG | - | chr8.1:10185387-10185406 | MS.gene58747:intron | 25.0% |
| AAAATGAATGCTGAAAAGCA+GGG | - | chr8.1:10184145-10184164 | MS.gene58747:intron | 30.0% | |
| AATCAAGTAATACTACGAGA+AGG | + | chr8.1:10185134-10185153 | None:intergenic | 30.0% | |
| ACATTCTTCACAATCTAACA+TGG | + | chr8.1:10185843-10185862 | None:intergenic | 30.0% | |
| ACTGTTAAATCGTAATACAC+TGG | - | chr8.1:10184881-10184900 | MS.gene58747:intron | 30.0% | |
| ACTTTGTAAAGATGTGAATG+TGG | - | chr8.1:10183996-10184015 | MS.gene58747:intron | 30.0% | |
| CAACTACAAAGCAATTTGAA+CGG | - | chr8.1:10182344-10182363 | MS.gene58747:intron | 30.0% | |
| CAGTTGAAAACAAAATGTAC+TGG | + | chr8.1:10186454-10186473 | None:intergenic | 30.0% | |
| CGGAATAAACTATTATTAGC+TGG | + | chr8.1:10184685-10184704 | None:intergenic | 30.0% | |
| CTTTCTTTGAATAGGATGAA+TGG | - | chr8.1:10185185-10185204 | MS.gene58747:intron | 30.0% | |
| GTAGCATAAAGTAACAACTT+AGG | + | chr8.1:10185750-10185769 | None:intergenic | 30.0% | |
| TGACAGTTGAACAATAACAA+TGG | - | chr8.1:10184540-10184559 | MS.gene58747:CDS | 30.0% | |
| TGATGAATTTCTGATTCCAA+TGG | + | chr8.1:10186255-10186274 | None:intergenic | 30.0% | |
| TGGTGAAGAAAAAATCATCA+AGG | + | chr8.1:10185549-10185568 | None:intergenic | 30.0% | |
| TTCAAATTCTGCTATGCTAA+AGG | + | chr8.1:10184401-10184420 | None:intergenic | 30.0% | |
| TTCAATTTCTCCTTTCTCAT+TGG | - | chr8.1:10182128-10182147 | MS.gene58747:intron | 30.0% | |
| TTCCGTGAAAAGTTATTCAA+TGG | - | chr8.1:10184700-10184719 | MS.gene58747:intron | 30.0% | |
| ! | AAGTATTTTATAGCTGGGAA+AGG | + | chr8.1:10185293-10185312 | None:intergenic | 30.0% |
| ! | ACACTGATTAATACTTTCAG+AGG | - | chr8.1:10185587-10185606 | MS.gene58747:intron | 30.0% |
| ! | CACCATTGAATAACTTTTCA+CGG | + | chr8.1:10184705-10184724 | None:intergenic | 30.0% |
| ! | CTTGAGTTTTTATCTGATTG+AGG | - | chr8.1:10186228-10186247 | MS.gene58747:CDS | 30.0% |
| ! | GAAAACGTACTTCAGTTTTT+AGG | + | chr8.1:10184938-10184957 | None:intergenic | 30.0% |
| ! | TAGCTATACAGTGAAACTTT+TGG | - | chr8.1:10184994-10185013 | MS.gene58747:intron | 30.0% |
| ! | TGTTAACTCTTCTCTTTTTG+AGG | + | chr8.1:10184964-10184983 | None:intergenic | 30.0% |
| ! | TGTTTTGTGACTCGTAAAAA+CGG | + | chr8.1:10182158-10182177 | None:intergenic | 30.0% |
| ! | TTTTCAACTGTAATTCAGAC+TGG | - | chr8.1:10185499-10185518 | MS.gene58747:intron | 30.0% |
| !!! | TTTTAATTTTGGGAGTGTGT+CGG | + | chr8.1:10185236-10185255 | None:intergenic | 30.0% |
| AAGAGGTCTCAAATGTTTAG+GGG | - | chr8.1:10185210-10185229 | MS.gene58747:intron | 35.0% | |
| AATAGTACACAGCTCACATA+TGG | + | chr8.1:10185640-10185659 | None:intergenic | 35.0% | |
| ATAAGATGACCACACATAAC+AGG | + | chr8.1:10186293-10186312 | None:intergenic | 35.0% | |
| ATTCACAAATCATAAGGCTG+TGG | + | chr8.1:10186317-10186336 | None:intergenic | 35.0% | |
| ATTTACGGATGTCCCTAATA+AGG | - | chr8.1:10185349-10185368 | MS.gene58747:intron | 35.0% | |
| CAAATAGCACTACCCTATAA+CGG | + | chr8.1:10184306-10184325 | None:intergenic | 35.0% | |
| CTACCCAAGACCAAAAAAAA+AGG | + | chr8.1:10185393-10185412 | None:intergenic | 35.0% | |
| GAAAATGAATGCTGAAAAGC+AGG | - | chr8.1:10184144-10184163 | MS.gene58747:intron | 35.0% | |
| GAAGAGGTCTCAAATGTTTA+GGG | - | chr8.1:10185209-10185228 | MS.gene58747:intron | 35.0% | |
| GAGGCAATATTTGAATGCAT+AGG | + | chr8.1:10185450-10185469 | None:intergenic | 35.0% | |
| GCGGAGAAAAGATTAAGAAA+AGG | + | chr8.1:10184915-10184934 | None:intergenic | 35.0% | |
| GTTCAAACAGATTCACAAAG+TGG | + | chr8.1:10185569-10185588 | None:intergenic | 35.0% | |
| TACTTTCAGAGGATAAGCAA+AGG | - | chr8.1:10185598-10185617 | MS.gene58747:intron | 35.0% | |
| TGTCCCATGGAAAAAAAAGT+GGG | + | chr8.1:10184262-10184281 | None:intergenic | 35.0% | |
| TTTATCTGATTGAGGTCCAT+TGG | - | chr8.1:10186236-10186255 | MS.gene58747:intron | 35.0% | |
| ! | AGGAGAAATTGAAGAAGTAC+CGG | + | chr8.1:10182121-10182140 | None:intergenic | 35.0% |
| ! | ATACAAAGTTGGTTACATCC+TGG | - | chr8.1:10185946-10185965 | MS.gene58747:intron | 35.0% |
| ! | ATGGATTGTAGTTTGGATCA+TGG | + | chr8.1:10185051-10185070 | None:intergenic | 35.0% |
| ! | CAACACTGTCATGTTTGTTA+TGG | - | chr8.1:10184445-10184464 | MS.gene58747:intron | 35.0% |
| ! | CTTTTCAGCATTCATTTTCC+TGG | + | chr8.1:10184143-10184162 | None:intergenic | 35.0% |
| !! | AAAGCAGGGTTATTTTACCA+AGG | - | chr8.1:10184159-10184178 | MS.gene58747:intron | 35.0% |
| !! | AATGAATGGACTGAAGAAAG+AGG | - | chr8.1:10185261-10185280 | MS.gene58747:intron | 35.0% |
| !! | ATTGACTTGAGAAGGGAATT+CGG | + | chr8.1:10185673-10185692 | None:intergenic | 35.0% |
| !!! | ATTCCCCACTTTTTTTTCCA+TGG | - | chr8.1:10184255-10184274 | MS.gene58747:intron | 35.0% |
| !!! | CTTTTTTTTTGGTCTTGGGT+AGG | - | chr8.1:10185391-10185410 | MS.gene58747:intron | 35.0% |
| !!! | TTCCCCACTTTTTTTTCCAT+GGG | - | chr8.1:10184256-10184275 | MS.gene58747:intron | 35.0% |
| AAACGGAGAACCAATGAGAA+AGG | + | chr8.1:10182141-10182160 | None:intergenic | 40.0% | |
| ACAATCTAACATGGTTGTGC+TGG | + | chr8.1:10185834-10185853 | None:intergenic | 40.0% | |
| ACAGAGAAGCCTATTATGTG+TGG | - | chr8.1:10186384-10186403 | MS.gene58747:intron | 40.0% | |
| ACTATGACACTTCTGATGGA+AGG | - | chr8.1:10183767-10183786 | MS.gene58747:intron | 40.0% | |
| AGAAGCCTATTATGTGTGGT+CGG | - | chr8.1:10186388-10186407 | MS.gene58747:intron | 40.0% | |
| AGACATCAACCTGTTATGTG+TGG | - | chr8.1:10186281-10186300 | MS.gene58747:intron | 40.0% | |
| AGTCACTATGACACTTCTGA+TGG | - | chr8.1:10183763-10183782 | MS.gene58747:intron | 40.0% | |
| ATAAGCCGACCACACATAAT+AGG | + | chr8.1:10186396-10186415 | None:intergenic | 40.0% | |
| ATGTGGACCATACAGATGTT+AGG | - | chr8.1:10184013-10184032 | MS.gene58747:intron | 40.0% | |
| ATTAGCTGGATTCAGTGTTC+AGG | + | chr8.1:10184671-10184690 | None:intergenic | 40.0% | |
| CGAAGAGGTCTCAAATGTTT+AGG | - | chr8.1:10185208-10185227 | MS.gene58747:intron | 40.0% | |
| CGTGGTTCATGATACAAAGT+TGG | - | chr8.1:10185935-10185954 | MS.gene58747:intron | 40.0% | |
| GAGCTGTGTACTATTGTTCT+GGG | - | chr8.1:10185645-10185664 | MS.gene58747:intron | 40.0% | |
| GCATTCAAATATTGCCTCAC+AGG | - | chr8.1:10185452-10185471 | MS.gene58747:intron | 40.0% | |
| GTAGTTGTTCTCTTCGTCTT+CGG | + | chr8.1:10182331-10182350 | None:intergenic | 40.0% | |
| GTCCCATGGAAAAAAAAGTG+GGG | + | chr8.1:10184261-10184280 | None:intergenic | 40.0% | |
| GTGTCCCATGGAAAAAAAAG+TGG | + | chr8.1:10184263-10184282 | None:intergenic | 40.0% | |
| TCAGCATCCTAACATCTGTA+TGG | + | chr8.1:10184023-10184042 | None:intergenic | 40.0% | |
| TGAGCTGTGTACTATTGTTC+TGG | - | chr8.1:10185644-10185663 | MS.gene58747:intron | 40.0% | |
| TTAGCGCTCTGTATTCATTC+TGG | + | chr8.1:10186136-10186155 | None:intergenic | 40.0% | |
| TTAGGATGCTGATACTTGCT+TGG | - | chr8.1:10184031-10184050 | MS.gene58747:intron | 40.0% | |
| TTGCTTGGTACATATCTGAC+TGG | - | chr8.1:10184046-10184065 | MS.gene58747:intron | 40.0% | |
| ! | AAAGTGCTTCAATCCCATCT+GGG | + | chr8.1:10183981-10184000 | None:intergenic | 40.0% |
| ! | ACAGGTAAGCTTAGTCTTCT+CGG | - | chr8.1:10185470-10185489 | MS.gene58747:intron | 40.0% |
| ! | CAGAGTATCTAAAGGTGAGT+AGG | - | chr8.1:10185700-10185719 | MS.gene58747:intron | 40.0% |
| ! | GATGGTTCCAGAAAGTTTTG+AGG | - | chr8.1:10185415-10185434 | MS.gene58747:intron | 40.0% |
| ! | TGAATACAGAGCGCTAACAA+TGG | - | chr8.1:10186139-10186158 | MS.gene58747:intron | 40.0% |
| !! | ACGTACTTCAGTTTTTAGGG+CGG | + | chr8.1:10184934-10184953 | None:intergenic | 40.0% |
| !! | AGAGTGATTTTGACAAGCAG+TGG | - | chr8.1:10184727-10184746 | MS.gene58747:intron | 40.0% |
| !! | CAGGGTTATTTTACCAAGGT+TGG | - | chr8.1:10184163-10184182 | MS.gene58747:intron | 40.0% |
| AATGGAAGAATCGACGTCAG+TGG | + | chr8.1:10182094-10182113 | None:intergenic | 45.0% | |
| CAAAACTTCATGCGTACGAC+TGG | + | chr8.1:10185908-10185927 | None:intergenic | 45.0% | |
| CACAATATGCATGTGTCCCA+TGG | + | chr8.1:10184275-10184294 | None:intergenic | 45.0% | |
| CATGGGACACATGCATATTG+TGG | - | chr8.1:10184273-10184292 | MS.gene58747:intron | 45.0% | |
| GAAGACTAAGCTTACCTGTG+AGG | + | chr8.1:10185469-10185488 | None:intergenic | 45.0% | |
| GAATAGGATGAATGGCGAAG+AGG | - | chr8.1:10185193-10185212 | MS.gene58747:intron | 45.0% | |
| GCAATGACATGTGTCAGTGA+TGG | + | chr8.1:10183801-10183820 | None:intergenic | 45.0% | |
| TCGTTGGAAGTTACTGTGCT+TGG | - | chr8.1:10183879-10183898 | MS.gene58747:intron | 45.0% | |
| TGTCAGTGTCTGTGTTTCGT+TGG | - | chr8.1:10183863-10183882 | MS.gene58747:intron | 45.0% | |
| ! | CAAAGTGCTTCAATCCCATC+TGG | + | chr8.1:10183982-10184001 | None:intergenic | 45.0% |
| ! | CAGGTAAGCTTAGTCTTCTC+GGG | - | chr8.1:10185471-10185490 | MS.gene58747:intron | 45.0% |
| ! | GTCGATTCTTCCATTCGTAC+CGG | - | chr8.1:10182099-10182118 | MS.gene58747:intron | 45.0% |
| ! | GTGTGAAAGCACAAGACTGT+TGG | - | chr8.1:10185022-10185041 | MS.gene58747:intron | 45.0% |
| !! | TGAAGAAGTACCGGTACGAA+TGG | + | chr8.1:10182112-10182131 | None:intergenic | 45.0% |
| !!! | TTTTGGTCTTGGGTAGGTGA+TGG | - | chr8.1:10185397-10185416 | MS.gene58747:intron | 45.0% |
| AATCGACGTCAGTGGTTGGT+GGG | + | chr8.1:10182086-10182105 | None:intergenic | 50.0% | |
| AATTGAACCTCCCCTCGTCT+TGG | + | chr8.1:10184790-10184809 | None:intergenic | 50.0% | |
| ATGTGTGAGTCCAAGACGAG+GGG | - | chr8.1:10184777-10184796 | MS.gene58747:intron | 50.0% | |
| CATGTGTGAGTCCAAGACGA+GGG | - | chr8.1:10184776-10184795 | MS.gene58747:intron | 50.0% | |
| GAAGAATCGACGTCAGTGGT+TGG | + | chr8.1:10182090-10182109 | None:intergenic | 50.0% | |
| GAGCGCTAACAATGGATCAC+TGG | - | chr8.1:10186147-10186166 | MS.gene58747:intron | 50.0% | |
| TCCTCGCTCCAAACGAAAAC+CGG | - | chr8.1:10182059-10182078 | MS.gene58747:intron | 50.0% | |
| TGTGGCGCTATGCCGTTATA+GGG | - | chr8.1:10184291-10184310 | MS.gene58747:intron | 50.0% | |
| TTGTGGCGCTATGCCGTTAT+AGG | - | chr8.1:10184290-10184309 | MS.gene58747:intron | 50.0% | |
| ! | CGTACGACTGGCTACAAGTA+TGG | + | chr8.1:10185896-10185915 | None:intergenic | 50.0% |
| ! | TTTGGTTGGTCAGCCCAGAT+GGG | - | chr8.1:10183965-10183984 | MS.gene58747:intron | 50.0% |
| GAATCGACGTCAGTGGTTGG+TGG | + | chr8.1:10182087-10182106 | None:intergenic | 55.0% | |
| GCATGTGTGAGTCCAAGACG+AGG | - | chr8.1:10184775-10184794 | MS.gene58747:intron | 55.0% | |
| ! | GTTTGGTTGGTCAGCCCAGA+TGG | - | chr8.1:10183964-10183983 | MS.gene58747:intron | 55.0% |
| !! | ACCGGTTTTCGTTTGGAGCG+AGG | + | chr8.1:10182063-10182082 | None:intergenic | 55.0% |
| !! | GGTTTTCGTTTGGAGCGAGG+AGG | + | chr8.1:10182060-10182079 | None:intergenic | 55.0% |
| !! | TGGTGGGACCGGTTTTCGTT+TGG | + | chr8.1:10182070-10182089 | None:intergenic | 55.0% |
| TGTGAGTCCAAGACGAGGGG+AGG | - | chr8.1:10184780-10184799 | MS.gene58747:intron | 60.0% | |
| !! | ACGTCAGTGGTTGGTGGGAC+CGG | + | chr8.1:10182081-10182100 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 10182054 | 10186524 | 10182054 | ID=MS.gene58747 |
| chr8.1 | mRNA | 10182054 | 10186524 | 10182054 | ID=MS.gene58747.t1;Parent=MS.gene58747 |
| chr8.1 | exon | 10186458 | 10186524 | 10186458 | ID=MS.gene58747.t1.exon1;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10186458 | 10186524 | 10186458 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10186162 | 10186252 | 10186162 | ID=MS.gene58747.t1.exon2;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10186162 | 10186252 | 10186162 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10184526 | 10184600 | 10184526 | ID=MS.gene58747.t1.exon3;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10184526 | 10184600 | 10184526 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10184398 | 10184434 | 10184398 | ID=MS.gene58747.t1.exon4;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10184398 | 10184434 | 10184398 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10183296 | 10183379 | 10183296 | ID=MS.gene58747.t1.exon5;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10183296 | 10183379 | 10183296 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10183105 | 10183165 | 10183105 | ID=MS.gene58747.t1.exon6;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10183105 | 10183165 | 10183105 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10182865 | 10182971 | 10182865 | ID=MS.gene58747.t1.exon7;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10182865 | 10182971 | 10182865 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10182382 | 10182447 | 10182382 | ID=MS.gene58747.t1.exon8;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10182382 | 10182447 | 10182382 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| chr8.1 | exon | 10182054 | 10182077 | 10182054 | ID=MS.gene58747.t1.exon9;Parent=MS.gene58747.t1 |
| chr8.1 | CDS | 10182054 | 10182077 | 10182054 | ID=cds.MS.gene58747.t1;Parent=MS.gene58747.t1 |
| Gene Sequence |
| Protein sequence |
