Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59323.t1 | XP_003611911.1 | 86.2 | 240 | 29 | 2 | 1 | 237 | 1 | 239 | 4.60E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59323.t1 | Q96GF1 | 47.8 | 134 | 46 | 5 | 31 | 163 | 32 | 142 | 4.6e-25 | 116.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59323.t1 | G7KAV6 | 86.2 | 240 | 29 | 2 | 1 | 237 | 1 | 239 | 3.3e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59323 | MS.gene055526 | PPI |
| MS.gene41663 | MS.gene59323 | PPI |
| MS.gene013177 | MS.gene59323 | PPI |
| MS.gene06250 | MS.gene59323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59323.t1 | MTR_5g019300 | 91.667 | 240 | 16 | 2 | 1 | 237 | 1 | 239 | 1.04e-139 | 391 |
| MS.gene59323.t1 | MTR_1g021895 | 58.294 | 211 | 76 | 6 | 32 | 235 | 26 | 231 | 2.17e-69 | 213 |
| MS.gene59323.t1 | MTR_1g054210 | 51.724 | 87 | 41 | 1 | 36 | 121 | 122 | 208 | 5.43e-29 | 109 |
| MS.gene59323.t1 | MTR_8g465910 | 42.400 | 125 | 60 | 3 | 17 | 129 | 25 | 149 | 2.07e-28 | 108 |
| MS.gene59323.t1 | MTR_2g090330 | 50.000 | 90 | 40 | 2 | 34 | 118 | 28 | 117 | 3.80e-28 | 105 |
| MS.gene59323.t1 | MTR_2g090330 | 50.000 | 90 | 40 | 2 | 34 | 118 | 31 | 120 | 4.53e-28 | 105 |
| MS.gene59323.t1 | MTR_2g090325 | 49.000 | 100 | 34 | 2 | 17 | 116 | 11 | 93 | 5.92e-28 | 105 |
| MS.gene59323.t1 | MTR_7g093390 | 51.087 | 92 | 43 | 1 | 31 | 122 | 165 | 254 | 3.48e-27 | 108 |
| MS.gene59323.t1 | MTR_2g090295 | 42.373 | 118 | 56 | 3 | 7 | 116 | 15 | 128 | 6.92e-26 | 101 |
| MS.gene59323.t1 | MTR_1g054260 | 41.085 | 129 | 62 | 3 | 10 | 124 | 57 | 185 | 1.06e-25 | 100 |
| MS.gene59323.t1 | MTR_1g054280 | 51.190 | 84 | 38 | 3 | 36 | 117 | 76 | 158 | 3.52e-25 | 100 |
| MS.gene59323.t1 | MTR_1g054465 | 43.636 | 110 | 48 | 3 | 21 | 116 | 36 | 145 | 1.56e-24 | 96.7 |
| MS.gene59323.t1 | MTR_4g029440 | 45.455 | 88 | 47 | 1 | 36 | 122 | 126 | 213 | 9.11e-24 | 99.0 |
| MS.gene59323.t1 | MTR_4g029440 | 45.455 | 88 | 47 | 1 | 36 | 122 | 132 | 219 | 9.25e-24 | 99.0 |
| MS.gene59323.t1 | MTR_4g088875 | 45.918 | 98 | 42 | 3 | 36 | 122 | 31 | 128 | 2.29e-22 | 92.0 |
| MS.gene59323.t1 | MTR_4g088870 | 40.351 | 114 | 56 | 3 | 21 | 122 | 15 | 128 | 2.55e-22 | 90.9 |
| MS.gene59323.t1 | MTR_2g013550 | 45.833 | 96 | 42 | 3 | 36 | 122 | 27 | 121 | 5.53e-22 | 90.9 |
| MS.gene59323.t1 | MTR_2g061230 | 39.773 | 88 | 52 | 1 | 36 | 122 | 107 | 194 | 6.44e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59323.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 24 | 235 | 16 | 227 | 6.33e-89 | 262 |
| MS.gene59323.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 24 | 235 | 16 | 227 | 6.33e-89 | 262 |
| MS.gene59323.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 24 | 235 | 16 | 227 | 6.33e-89 | 262 |
| MS.gene59323.t1 | AT1G19310 | 57.212 | 208 | 80 | 5 | 18 | 219 | 5 | 209 | 4.52e-74 | 224 |
| MS.gene59323.t1 | AT1G74990 | 50.746 | 134 | 61 | 4 | 24 | 154 | 4 | 135 | 3.71e-41 | 137 |
| MS.gene59323.t1 | AT4G27470 | 45.283 | 106 | 44 | 3 | 31 | 125 | 37 | 139 | 3.23e-26 | 102 |
| MS.gene59323.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 28 | 116 | 38 | 130 | 1.40e-25 | 100 |
| MS.gene59323.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 28 | 116 | 38 | 130 | 1.40e-25 | 100 |
| MS.gene59323.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 28 | 116 | 38 | 130 | 1.40e-25 | 100 |
| MS.gene59323.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 28 | 116 | 38 | 130 | 1.40e-25 | 100 |
| MS.gene59323.t1 | AT4G28270 | 47.917 | 96 | 31 | 4 | 34 | 116 | 17 | 106 | 2.59e-24 | 96.3 |
| MS.gene59323.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 36 | 124 | 137 | 222 | 1.54e-23 | 98.2 |
| MS.gene59323.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 36 | 124 | 137 | 222 | 1.54e-23 | 98.2 |
| MS.gene59323.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 36 | 124 | 137 | 222 | 1.54e-23 | 98.2 |
| MS.gene59323.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 36 | 124 | 137 | 222 | 1.54e-23 | 98.2 |
| MS.gene59323.t1 | AT2G42030 | 44.828 | 87 | 45 | 2 | 36 | 122 | 139 | 222 | 3.08e-23 | 97.4 |
| MS.gene59323.t1 | AT2G44410 | 40.659 | 91 | 51 | 2 | 34 | 122 | 121 | 210 | 1.07e-18 | 84.3 |
Find 74 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGGATGCTACTGTTTA+TGG | 0.167323 | 5.4:-11750149 | MS.gene59323:CDS |
| GAGAAATTGGTGCCTCTTTA+TGG | 0.188488 | 5.4:-11750419 | MS.gene59323:CDS |
| ATTTGGGTTCAACGGGTTTC+AGG | 0.247980 | 5.4:-11750108 | MS.gene59323:CDS |
| TTTGTTGGCCATGTCTTTAT+AGG | 0.254637 | 5.4:-11750502 | MS.gene59323:CDS |
| ACAACTTCTGGTTATCCATT+TGG | 0.261632 | 5.4:-11750125 | MS.gene59323:CDS |
| ACTGTTTATGGGACAACTTC+TGG | 0.273010 | 5.4:-11750137 | MS.gene59323:CDS |
| CAACTTCTGGTTATCCATTT+GGG | 0.287027 | 5.4:-11750124 | MS.gene59323:CDS |
| ACTTGTTCAGGAAGAGAAAT+TGG | 0.291213 | 5.4:-11750432 | MS.gene59323:CDS |
| TACTGCTGGGATTGGATTGA+TGG | 0.307850 | 5.4:-11750273 | MS.gene59323:CDS |
| CTTATGAATATACACTTTCA+TGG | 0.314708 | 5.4:-11750173 | MS.gene59323:CDS |
| CTTTACAAACAGGACATTCT+TGG | 0.336132 | 5.4:+11750456 | None:intergenic |
| AAGAATTTGCTTATGCTGAT+TGG | 0.345800 | 5.4:-11750017 | MS.gene59323:CDS |
| GAGATTCCTCGCCGTCCTTC+CGG | 0.353413 | 5.4:-11750347 | MS.gene59323:CDS |
| CCGATGGCTACTGCTAGATT+TGG | 0.354815 | 5.4:-11750239 | MS.gene59323:CDS |
| AGAGAAATGTCTGGACATTT+CGG | 0.359147 | 5.4:-11750677 | None:intergenic |
| TTCAGGATGCTACTGTTTAT+GGG | 0.361416 | 5.4:-11750148 | MS.gene59323:CDS |
| CACGGTTTGCGGCCTCTGTC+CGG | 0.379672 | 5.4:+11750328 | None:intergenic |
| CCCGGATACGATTTAGTTCT+CGG | 0.381612 | 5.4:+11750374 | None:intergenic |
| TTGTTATGAGGTGGAGGATT+CGG | 0.394244 | 5.4:+11750305 | None:intergenic |
| TCAAAATCGCCGACATCGCC+AGG | 0.399241 | 5.4:+11750584 | None:intergenic |
| CCAAACCCATCATGTTCATC+AGG | 0.401623 | 5.4:-11750626 | MS.gene59323:CDS |
| GGTTTCAATTCGCAAGCAAC+AGG | 0.415216 | 5.4:-11750071 | MS.gene59323:CDS |
| TTTACAAACAGGACATTCTT+GGG | 0.417710 | 5.4:+11750457 | None:intergenic |
| TTTGGGTTCAACGGGTTTCA+GGG | 0.418547 | 5.4:-11750107 | MS.gene59323:CDS |
| TGAACAAGTGCTTTACAAAC+AGG | 0.427996 | 5.4:+11750446 | None:intergenic |
| CCTGATGAACATGATGGGTT+TGG | 0.431554 | 5.4:+11750626 | None:intergenic |
| TCCGAGAACTAAATCGTATC+CGG | 0.438729 | 5.4:-11750375 | MS.gene59323:CDS |
| TGTTTGTAAAGCACTTGTTC+AGG | 0.444996 | 5.4:-11750444 | MS.gene59323:CDS |
| GGAGGATTCGGCACGGTTTG+CGG | 0.445170 | 5.4:+11750317 | None:intergenic |
| AACAGGACATTCTTGGGAAT+GGG | 0.452683 | 5.4:+11750463 | None:intergenic |
| GTTATCCATTTGGGTTCAAC+GGG | 0.454746 | 5.4:-11750115 | MS.gene59323:CDS |
| TGAAACCCGTTGAACCCAAA+TGG | 0.458530 | 5.4:+11750110 | None:intergenic |
| ACTGCTGGGATTGGATTGAT+GGG | 0.466877 | 5.4:-11750272 | MS.gene59323:CDS |
| AAACAGGACATTCTTGGGAA+TGG | 0.467189 | 5.4:+11750462 | None:intergenic |
| GGTTCAACGGGTTTCAGGGT+GGG | 0.474844 | 5.4:-11750103 | MS.gene59323:CDS |
| GGTTATCCATTTGGGTTCAA+CGG | 0.476182 | 5.4:-11750116 | MS.gene59323:CDS |
| AACTAAATCGTATCCGGGGA+TGG | 0.476536 | 5.4:-11750369 | MS.gene59323:CDS |
| TGAGAGATTAGAGAAATGTC+TGG | 0.479200 | 5.4:-11750686 | None:intergenic |
| TGGATTTCTAGTCCTTCTTA+CGG | 0.485784 | 5.4:-11749997 | MS.gene59323:CDS |
| CTCCCATTGTTATGAGGTGG+AGG | 0.490197 | 5.4:+11750299 | None:intergenic |
| GATGAACATGATGGGTTTGG+TGG | 0.500767 | 5.4:+11750629 | None:intergenic |
| ATCCTCCACCTCATAACAAT+GGG | 0.502553 | 5.4:-11750301 | MS.gene59323:CDS |
| TTGGTGCCTCTTTATGGTAG+AGG | 0.505266 | 5.4:-11750413 | MS.gene59323:CDS |
| GTTGGCCATGTCTTTATAGG+TGG | 0.509894 | 5.4:-11750499 | MS.gene59323:CDS |
| AACAGTTCCAACAATGATCC+TGG | 0.522277 | 5.4:-11750602 | MS.gene59323:CDS |
| AACAGGACAAGTGCAACGGC+AGG | 0.523959 | 5.4:-11750054 | MS.gene59323:CDS |
| CCGAGAACTAAATCGTATCC+GGG | 0.524662 | 5.4:-11750374 | MS.gene59323:CDS |
| GTAAAACTCCCATTGTTATG+AGG | 0.528292 | 5.4:+11750293 | None:intergenic |
| GCGGCCTCTGTCCGGAAGGA+CGG | 0.532356 | 5.4:+11750336 | None:intergenic |
| GACATCGCCAGGATCATTGT+TGG | 0.534796 | 5.4:+11750595 | None:intergenic |
| GATCCAGTGATCACACTTTG+TGG | 0.540983 | 5.4:-11750533 | MS.gene59323:CDS |
| GCTGGGATTGGATTGATGGG+TGG | 0.551373 | 5.4:-11750269 | MS.gene59323:CDS |
| GATGGGTGGATTTCTTCCGA+TGG | 0.553310 | 5.4:-11750255 | MS.gene59323:CDS |
| AGTGTATATTCATAAGCGAC+GGG | 0.562257 | 5.4:+11750180 | None:intergenic |
| TGACCACAAAGTGTGATCAC+TGG | 0.563476 | 5.4:+11750530 | None:intergenic |
| AACAATGATCCTGGCGATGT+CGG | 0.571877 | 5.4:-11750593 | MS.gene59323:CDS |
| TTTCAGGGTGGGAATGCGAG+AGG | 0.574157 | 5.4:-11750092 | MS.gene59323:CDS |
| GTTTGCGGCCTCTGTCCGGA+AGG | 0.581142 | 5.4:+11750332 | None:intergenic |
| AAGTGTATATTCATAAGCGA+CGG | 0.582632 | 5.4:+11750179 | None:intergenic |
| CTGTTCCCTGATGAACATGA+TGG | 0.583916 | 5.4:+11750620 | None:intergenic |
| GGGTTCAACGGGTTTCAGGG+TGG | 0.588862 | 5.4:-11750104 | MS.gene59323:CDS |
| CGGCGAGGAATCTCCATCCC+CGG | 0.591217 | 5.4:+11750356 | None:intergenic |
| AAACTCCCATTGTTATGAGG+TGG | 0.592147 | 5.4:+11750296 | None:intergenic |
| AATCCTCCACCTCATAACAA+TGG | 0.595101 | 5.4:-11750302 | MS.gene59323:CDS |
| CTCGCCGTCCTTCCGGACAG+AGG | 0.603395 | 5.4:-11750340 | MS.gene59323:CDS |
| AAGCAACAGGACAAGTGCAA+CGG | 0.621601 | 5.4:-11750058 | MS.gene59323:CDS |
| CTCTGTCCGGAAGGACGGCG+AGG | 0.628222 | 5.4:+11750341 | None:intergenic |
| AGGACAAGTGCAACGGCAGG+AGG | 0.631148 | 5.4:-11750051 | MS.gene59323:CDS |
| CAAACCCATCATGTTCATCA+GGG | 0.650075 | 5.4:-11750625 | MS.gene59323:CDS |
| CCAAATCTAGCAGTAGCCAT+CGG | 0.653472 | 5.4:+11750239 | None:intergenic |
| ATGAGGTGGAGGATTCGGCA+CGG | 0.676850 | 5.4:+11750310 | None:intergenic |
| TGTTCCCTGATGAACATGAT+GGG | 0.680660 | 5.4:+11750621 | None:intergenic |
| TGTAACCACCTATAAAGACA+TGG | 0.687496 | 5.4:+11750494 | None:intergenic |
| CGAGAACTAAATCGTATCCG+GGG | 0.687817 | 5.4:-11750373 | MS.gene59323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAACATATGTTTTGATT+TGG | - | chr5.4:11750090-11750109 | MS.gene59323:CDS | 20.0% |
| ! | CTTATGAATATACACTTTCA+TGG | - | chr5.4:11750478-11750497 | MS.gene59323:CDS | 25.0% |
| ! | TAAAAAAGATAACCGTAAGA+AGG | + | chr5.4:11750669-11750688 | None:intergenic | 25.0% |
| !!! | TTTGTGGTCATTTATTTTGT+TGG | - | chr5.4:11750134-11750153 | MS.gene59323:CDS | 25.0% |
| AAGTGTATATTCATAAGCGA+CGG | + | chr5.4:11750475-11750494 | None:intergenic | 30.0% | |
| TTTACAAACAGGACATTCTT+GGG | + | chr5.4:11750197-11750216 | None:intergenic | 30.0% | |
| ! | AAGAATTTGCTTATGCTGAT+TGG | - | chr5.4:11750634-11750653 | MS.gene59323:CDS | 30.0% |
| ! | TATACACTTTCATGGTTTTC+AGG | - | chr5.4:11750486-11750505 | MS.gene59323:CDS | 30.0% |
| ! | TGGAAATTTTTCGTTTTCGA+CGG | - | chr5.4:11750432-11750451 | MS.gene59323:CDS | 30.0% |
| ACTTGTTCAGGAAGAGAAAT+TGG | - | chr5.4:11750219-11750238 | MS.gene59323:CDS | 35.0% | |
| AGTGTATATTCATAAGCGAC+GGG | + | chr5.4:11750474-11750493 | None:intergenic | 35.0% | |
| CTTTACAAACAGGACATTCT+TGG | + | chr5.4:11750198-11750217 | None:intergenic | 35.0% | |
| GTAAAACTCCCATTGTTATG+AGG | + | chr5.4:11750361-11750380 | None:intergenic | 35.0% | |
| TGAACAAGTGCTTTACAAAC+AGG | + | chr5.4:11750208-11750227 | None:intergenic | 35.0% | |
| TGTAACCACCTATAAAGACA+TGG | + | chr5.4:11750160-11750179 | None:intergenic | 35.0% | |
| TTCAGGATGCTACTGTTTAT+GGG | - | chr5.4:11750503-11750522 | MS.gene59323:CDS | 35.0% | |
| TTTCAGGATGCTACTGTTTA+TGG | - | chr5.4:11750502-11750521 | MS.gene59323:CDS | 35.0% | |
| TTTGTTGGCCATGTCTTTAT+AGG | - | chr5.4:11750149-11750168 | MS.gene59323:CDS | 35.0% | |
| ! | ACAACTTCTGGTTATCCATT+TGG | - | chr5.4:11750526-11750545 | MS.gene59323:CDS | 35.0% |
| ! | CAACTTCTGGTTATCCATTT+GGG | - | chr5.4:11750527-11750546 | MS.gene59323:CDS | 35.0% |
| ! | GGAAATTTTTCGTTTTCGAC+GGG | - | chr5.4:11750433-11750452 | MS.gene59323:CDS | 35.0% |
| ! | GTTTTTCCTCTACCATAAAG+AGG | + | chr5.4:11750247-11750266 | None:intergenic | 35.0% |
| ! | TGTTTGTAAAGCACTTGTTC+AGG | - | chr5.4:11750207-11750226 | MS.gene59323:CDS | 35.0% |
| !! | TGGATTTCTAGTCCTTCTTA+CGG | - | chr5.4:11750654-11750673 | MS.gene59323:CDS | 35.0% |
| !!! | CATATGTTTTGATTTGGCAC+AGG | - | chr5.4:11750096-11750115 | MS.gene59323:CDS | 35.0% |
| AAACAGGACATTCTTGGGAA+TGG | + | chr5.4:11750192-11750211 | None:intergenic | 40.0% | |
| AAACTCCCATTGTTATGAGG+TGG | + | chr5.4:11750358-11750377 | None:intergenic | 40.0% | |
| AACAGGACATTCTTGGGAAT+GGG | + | chr5.4:11750191-11750210 | None:intergenic | 40.0% | |
| AACAGTTCCAACAATGATCC+TGG | - | chr5.4:11750049-11750068 | MS.gene59323:CDS | 40.0% | |
| AATCCTCCACCTCATAACAA+TGG | - | chr5.4:11750349-11750368 | MS.gene59323:CDS | 40.0% | |
| ACTGTTTATGGGACAACTTC+TGG | - | chr5.4:11750514-11750533 | MS.gene59323:CDS | 40.0% | |
| ATCCTCCACCTCATAACAAT+GGG | - | chr5.4:11750350-11750369 | MS.gene59323:CDS | 40.0% | |
| CAAACCCATCATGTTCATCA+GGG | - | chr5.4:11750026-11750045 | MS.gene59323:CDS | 40.0% | |
| TCCGAGAACTAAATCGTATC+CGG | - | chr5.4:11750276-11750295 | MS.gene59323:CDS | 40.0% | |
| TGGTAGAGGAAAAACACAGA+CGG | - | chr5.4:11750252-11750271 | MS.gene59323:CDS | 40.0% | |
| TGTTCCCTGATGAACATGAT+GGG | + | chr5.4:11750033-11750052 | None:intergenic | 40.0% | |
| TTGTTATGAGGTGGAGGATT+CGG | + | chr5.4:11750349-11750368 | None:intergenic | 40.0% | |
| ! | AACAATGGGAGTTTTACTGC+TGG | - | chr5.4:11750364-11750383 | MS.gene59323:CDS | 40.0% |
| ! | ACAATGGGAGTTTTACTGCT+GGG | - | chr5.4:11750365-11750384 | MS.gene59323:CDS | 40.0% |
| ! | GAGAAATTGGTGCCTCTTTA+TGG | - | chr5.4:11750232-11750251 | MS.gene59323:CDS | 40.0% |
| ! | GGTTATCCATTTGGGTTCAA+CGG | - | chr5.4:11750535-11750554 | MS.gene59323:CDS | 40.0% |
| ! | GTTATCCATTTGGGTTCAAC+GGG | - | chr5.4:11750536-11750555 | MS.gene59323:CDS | 40.0% |
| !! | TTTTCGTTTTCGACGGGTTT+TGG | - | chr5.4:11750439-11750458 | MS.gene59323:CDS | 40.0% |
| AACAATGATCCTGGCGATGT+CGG | - | chr5.4:11750058-11750077 | MS.gene59323:CDS | 45.0% | |
| AACTAAATCGTATCCGGGGA+TGG | - | chr5.4:11750282-11750301 | MS.gene59323:CDS | 45.0% | |
| AAGCAACAGGACAAGTGCAA+CGG | - | chr5.4:11750593-11750612 | MS.gene59323:CDS | 45.0% | |
| ACTGCTGGGATTGGATTGAT+GGG | - | chr5.4:11750379-11750398 | MS.gene59323:CDS | 45.0% | |
| CCAAACCCATCATGTTCATC+AGG | - | chr5.4:11750025-11750044 | MS.gene59323:CDS | 45.0% | |
| CCAAATCTAGCAGTAGCCAT+CGG | + | chr5.4:11750415-11750434 | None:intergenic | 45.0% | |
| CCGAGAACTAAATCGTATCC+GGG | - | chr5.4:11750277-11750296 | MS.gene59323:CDS | 45.0% | |
| CGAGAACTAAATCGTATCCG+GGG | - | chr5.4:11750278-11750297 | MS.gene59323:CDS | 45.0% | |
| CTGTTCCCTGATGAACATGA+TGG | + | chr5.4:11750034-11750053 | None:intergenic | 45.0% | |
| GATCCAGTGATCACACTTTG+TGG | - | chr5.4:11750118-11750137 | MS.gene59323:CDS | 45.0% | |
| GGTTTCAATTCGCAAGCAAC+AGG | - | chr5.4:11750580-11750599 | MS.gene59323:CDS | 45.0% | |
| GTTGGCCATGTCTTTATAGG+TGG | - | chr5.4:11750152-11750171 | MS.gene59323:CDS | 45.0% | |
| TACTGCTGGGATTGGATTGA+TGG | - | chr5.4:11750378-11750397 | MS.gene59323:CDS | 45.0% | |
| TGAAACCCGTTGAACCCAAA+TGG | + | chr5.4:11750544-11750563 | None:intergenic | 45.0% | |
| TGACCACAAAGTGTGATCAC+TGG | + | chr5.4:11750124-11750143 | None:intergenic | 45.0% | |
| ! | ATTTGGGTTCAACGGGTTTC+AGG | - | chr5.4:11750543-11750562 | MS.gene59323:CDS | 45.0% |
| ! | TTGGTGCCTCTTTATGGTAG+AGG | - | chr5.4:11750238-11750257 | MS.gene59323:CDS | 45.0% |
| ! | TTTGGGTTCAACGGGTTTCA+GGG | - | chr5.4:11750544-11750563 | MS.gene59323:CDS | 45.0% |
| !! | CCCGGATACGATTTAGTTCT+CGG | + | chr5.4:11750280-11750299 | None:intergenic | 45.0% |
| !! | CCTGATGAACATGATGGGTT+TGG | + | chr5.4:11750028-11750047 | None:intergenic | 45.0% |
| !! | GATGAACATGATGGGTTTGG+TGG | + | chr5.4:11750025-11750044 | None:intergenic | 45.0% |
| CCGATGGCTACTGCTAGATT+TGG | - | chr5.4:11750412-11750431 | MS.gene59323:CDS | 50.0% | |
| CTCCCATTGTTATGAGGTGG+AGG | + | chr5.4:11750355-11750374 | None:intergenic | 50.0% | |
| GACATCGCCAGGATCATTGT+TGG | + | chr5.4:11750059-11750078 | None:intergenic | 50.0% | |
| ! | GATGGGTGGATTTCTTCCGA+TGG | - | chr5.4:11750396-11750415 | MS.gene59323:CDS | 50.0% |
| ! | GGGAGTTTTACTGCTGGGAT+TGG | - | chr5.4:11750370-11750389 | MS.gene59323:CDS | 50.0% |
| !! | CGTTTTCGACGGGTTTTGGT+GGG | - | chr5.4:11750443-11750462 | MS.gene59323:CDS | 50.0% |
| !! | TCGTTTTCGACGGGTTTTGG+TGG | - | chr5.4:11750442-11750461 | MS.gene59323:CDS | 50.0% |
| AACAGGACAAGTGCAACGGC+AGG | - | chr5.4:11750597-11750616 | MS.gene59323:CDS | 55.0% | |
| ATGAGGTGGAGGATTCGGCA+CGG | + | chr5.4:11750344-11750363 | None:intergenic | 55.0% | |
| GCTGGGATTGGATTGATGGG+TGG | - | chr5.4:11750382-11750401 | MS.gene59323:CDS | 55.0% | |
| TCAAAATCGCCGACATCGCC+AGG | + | chr5.4:11750070-11750089 | None:intergenic | 55.0% | |
| TTTCAGGGTGGGAATGCGAG+AGG | - | chr5.4:11750559-11750578 | MS.gene59323:CDS | 55.0% | |
| ! | GGTTCAACGGGTTTCAGGGT+GGG | - | chr5.4:11750548-11750567 | MS.gene59323:CDS | 55.0% |
| AGGACAAGTGCAACGGCAGG+AGG | - | chr5.4:11750600-11750619 | MS.gene59323:CDS | 60.0% | |
| GAGATTCCTCGCCGTCCTTC+CGG | - | chr5.4:11750304-11750323 | MS.gene59323:CDS | 60.0% | |
| GGAGGATTCGGCACGGTTTG+CGG | + | chr5.4:11750337-11750356 | None:intergenic | 60.0% | |
| ! | GGGTTCAACGGGTTTCAGGG+TGG | - | chr5.4:11750547-11750566 | MS.gene59323:CDS | 60.0% |
| CACGGTTTGCGGCCTCTGTC+CGG | + | chr5.4:11750326-11750345 | None:intergenic | 65.0% | |
| CGGCGAGGAATCTCCATCCC+CGG | + | chr5.4:11750298-11750317 | None:intergenic | 65.0% | |
| GTTTGCGGCCTCTGTCCGGA+AGG | + | chr5.4:11750322-11750341 | None:intergenic | 65.0% | |
| CTCGCCGTCCTTCCGGACAG+AGG | - | chr5.4:11750311-11750330 | MS.gene59323:CDS | 70.0% | |
| CTCTGTCCGGAAGGACGGCG+AGG | + | chr5.4:11750313-11750332 | None:intergenic | 70.0% | |
| GCGGCCTCTGTCCGGAAGGA+CGG | + | chr5.4:11750318-11750337 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11749980 | 11750693 | 11749980 | ID=MS.gene59323 |
| chr5.4 | mRNA | 11749980 | 11750693 | 11749980 | ID=MS.gene59323.t1;Parent=MS.gene59323 |
| chr5.4 | exon | 11749980 | 11750693 | 11749980 | ID=MS.gene59323.t1.exon1;Parent=MS.gene59323.t1 |
| chr5.4 | CDS | 11749980 | 11750693 | 11749980 | ID=cds.MS.gene59323.t1;Parent=MS.gene59323.t1 |
| Gene Sequence |
| Protein sequence |
