Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59474.t1 | RHN54332.1 | 94.9 | 688 | 30 | 2 | 1 | 684 | 1 | 687 | 0.00E+00 | 1102.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59474.t1 | A0A396HLT7 | 94.9 | 688 | 30 | 2 | 1 | 684 | 1 | 687 | 0.0e+00 | 1102.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene06052 | MS.gene59474 | 0.816894 | 4.37E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59474.t1 | MTR_5g022240 | 97.242 | 689 | 12 | 3 | 1 | 684 | 1 | 687 | 0.0 | 1360 |
MS.gene59474.t1 | MTR_8g075770 | 72.110 | 692 | 160 | 11 | 1 | 684 | 1 | 667 | 0.0 | 924 |
MS.gene59474.t1 | MTR_4g073830 | 64.317 | 681 | 213 | 7 | 1 | 679 | 1 | 653 | 0.0 | 850 |
MS.gene59474.t1 | MTR_0064s0050 | 63.889 | 216 | 77 | 1 | 1 | 215 | 1 | 216 | 3.31e-82 | 260 |
MS.gene59474.t1 | MTR_0064s0010 | 60.386 | 207 | 81 | 1 | 1 | 206 | 1 | 207 | 6.74e-77 | 246 |
MS.gene59474.t1 | MTR_1g046850 | 51.754 | 228 | 99 | 4 | 5 | 231 | 8 | 225 | 1.78e-65 | 220 |
MS.gene59474.t1 | MTR_1g046850 | 63.095 | 84 | 30 | 1 | 133 | 215 | 209 | 292 | 5.84e-22 | 98.6 |
MS.gene59474.t1 | MTR_5g033190 | 42.403 | 283 | 159 | 2 | 391 | 672 | 322 | 601 | 6.45e-57 | 204 |
MS.gene59474.t1 | MTR_5g033190 | 40.893 | 291 | 160 | 7 | 9 | 289 | 14 | 302 | 1.35e-53 | 194 |
MS.gene59474.t1 | MTR_0116s0040 | 54.787 | 188 | 78 | 2 | 1 | 187 | 1 | 182 | 2.63e-53 | 182 |
MS.gene59474.t1 | MTR_4g105110 | 41.199 | 267 | 152 | 5 | 418 | 682 | 328 | 591 | 5.71e-51 | 187 |
MS.gene59474.t1 | MTR_4g105110 | 34.737 | 285 | 171 | 6 | 12 | 285 | 23 | 303 | 2.57e-38 | 150 |
MS.gene59474.t1 | MTR_4g105110 | 41.199 | 267 | 152 | 5 | 418 | 682 | 329 | 592 | 6.28e-51 | 187 |
MS.gene59474.t1 | MTR_4g105110 | 34.737 | 285 | 171 | 6 | 12 | 285 | 24 | 304 | 2.57e-38 | 150 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59474.t1 | AT5G66200 | 69.501 | 682 | 172 | 7 | 1 | 679 | 1 | 649 | 0.0 | 924 |
MS.gene59474.t1 | AT4G34940 | 66.471 | 683 | 206 | 7 | 1 | 679 | 1 | 664 | 0.0 | 879 |
MS.gene59474.t1 | AT4G36030 | 62.754 | 690 | 225 | 11 | 1 | 679 | 1 | 669 | 0.0 | 791 |
MS.gene59474.t1 | AT3G26600 | 36.637 | 666 | 332 | 9 | 16 | 672 | 19 | 603 | 4.43e-113 | 353 |
MS.gene59474.t1 | AT3G26600 | 45.725 | 269 | 140 | 3 | 415 | 682 | 265 | 528 | 4.71e-59 | 208 |
MS.gene59474.t1 | AT3G26600 | 42.424 | 198 | 106 | 3 | 16 | 205 | 19 | 216 | 1.03e-38 | 151 |
Find 149 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATTCAGCTTGTGTATTT+TGG | 0.146923 | 5.4:+13785719 | MS.gene59474:CDS |
TGTCAAGGCGATTGGGAATT+TGG | 0.151106 | 5.4:+13785517 | MS.gene59474:CDS |
TTGCTCAGCATAATATTATT+AGG | 0.225996 | 5.4:+13784721 | MS.gene59474:CDS |
TTGATCAACAACTGCTTTGC+AGG | 0.251405 | 5.4:-13785447 | None:intergenic |
GCAAAGAGTTCCTGACATTT+AGG | 0.255218 | 5.4:-13784702 | None:intergenic |
GCTTTGCAGGCAGGAGAATT+AGG | 0.264501 | 5.4:-13785434 | None:intergenic |
ATCACTCTATGCAAATTTCT+TGG | 0.297566 | 5.4:-13784972 | None:intergenic |
AGCTCGCTCTTGCTGCTTGC+CGG | 0.315337 | 5.4:-13784062 | None:intergenic |
CAATTCCGCGATGGCGTTGA+TGG | 0.331761 | 5.4:+13785358 | MS.gene59474:CDS |
CAGAGAAATTATTCGCATTC+GGG | 0.332509 | 5.4:+13785152 | MS.gene59474:CDS |
ACTCTATTGGTGATGTTTCA+TGG | 0.338825 | 5.4:+13784250 | MS.gene59474:CDS |
GATTCACGCCGCTGTTGTTA+TGG | 0.342302 | 5.4:+13784821 | MS.gene59474:CDS |
ACCAATTCCAATGCTCCTAA+TGG | 0.348391 | 5.4:+13785074 | MS.gene59474:CDS |
CTTGCTTCATTTCCTTCATT+AGG | 0.360142 | 5.4:-13785032 | None:intergenic |
AGCTGCTTCACTTGTGTCAT+TGG | 0.363225 | 5.4:+13784419 | MS.gene59474:CDS |
AGAGCAAGTTCCTCGCTATC+TGG | 0.364154 | 5.4:-13785800 | None:intergenic |
TTGTTACATGGTCTGCTAGC+TGG | 0.367669 | 5.4:-13783960 | None:intergenic |
GGCAATTTGTCGAAGCATTA+CGG | 0.368542 | 5.4:+13785274 | MS.gene59474:CDS |
CTTCTTGCAACAATTCTTCA+AGG | 0.380322 | 5.4:-13785886 | None:intergenic |
GTCCTAAAATGTCGTGCTAA+TGG | 0.380665 | 5.4:+13784159 | MS.gene59474:CDS |
TCAGAGAAATTATTCGCATT+CGG | 0.383621 | 5.4:+13785151 | MS.gene59474:CDS |
ACAACACCTTGAACTTTCAT+AGG | 0.383942 | 5.4:-13784645 | None:intergenic |
AGGTGCTTGGAGTGCTTGAA+TGG | 0.387693 | 5.4:+13785828 | MS.gene59474:CDS |
CTTGCTCTGGCTGAGGTGCT+TGG | 0.395280 | 5.4:+13785815 | MS.gene59474:CDS |
GAGAATGCTGCTAGAGCTAT+TGG | 0.402152 | 5.4:+13784537 | MS.gene59474:CDS |
GCACGAGGTAGTGACCGATA+TGG | 0.402172 | 5.4:+13784441 | MS.gene59474:CDS |
CAATTATAAGCTTCCCATAT+CGG | 0.403187 | 5.4:-13784455 | None:intergenic |
ACCATTAGGAGCATTGGAAT+TGG | 0.404098 | 5.4:-13785075 | None:intergenic |
TTACCATTACCATTACCATT+AGG | 0.404689 | 5.4:-13785089 | None:intergenic |
AGTTCAAGGTGTTGTTGCTT+GGG | 0.407438 | 5.4:+13784653 | MS.gene59474:CDS |
AGCTTATAATTGAAGAAGGT+GGG | 0.409005 | 5.4:+13784466 | MS.gene59474:CDS |
AAAACATAATATAGGTTCAT+TGG | 0.409008 | 5.4:-13784340 | None:intergenic |
AAAGAGAGGCAGAGGTTTCA+AGG | 0.409279 | 5.4:+13785600 | MS.gene59474:CDS |
ATCTGAAGATGCTGAGACTA+AGG | 0.412017 | 5.4:+13785196 | MS.gene59474:CDS |
GCTAGAGCTATTGGTCTGCT+TGG | 0.416289 | 5.4:+13784546 | MS.gene59474:CDS |
AGCAAGAGCTCTATGGCATT+TGG | 0.418524 | 5.4:+13785238 | MS.gene59474:CDS |
ATTTCCTTCATTAGGCTGCT+TGG | 0.418757 | 5.4:-13785024 | None:intergenic |
CCTACTGATGCAATTTATGA+TGG | 0.419434 | 5.4:-13785955 | None:intergenic |
ACCATTACCATTAGGAGCAT+TGG | 0.421821 | 5.4:-13785081 | None:intergenic |
TTCGCGAAAATTCTTAAAGA+AGG | 0.423742 | 5.4:+13784621 | MS.gene59474:CDS |
TCCCATCTAGAAAACTCTAT+TGG | 0.424874 | 5.4:+13784237 | MS.gene59474:CDS |
ATCGCGCTTAGGAAATTTGC+CGG | 0.426553 | 5.4:+13785632 | MS.gene59474:CDS |
GATAATTGAGAAAGCAGATT+CGG | 0.429925 | 5.4:+13785478 | MS.gene59474:CDS |
CAGATCGCTATGTTATATAC+TGG | 0.431500 | 5.4:+13784372 | MS.gene59474:CDS |
TAGAGTGATCACAAGTACTA+TGG | 0.435778 | 5.4:+13784986 | MS.gene59474:CDS |
GATCGCGGTGGCGAGTATCT+AGG | 0.436368 | 5.4:+13784300 | MS.gene59474:CDS |
ACCTGCACTTATGATTGCCT+TGG | 0.442127 | 5.4:-13785684 | None:intergenic |
GAATTTGGCAAGGACTTTCA+AGG | 0.444243 | 5.4:+13785532 | MS.gene59474:CDS |
AAATGGCAGCAAGAGCTCTA+TGG | 0.447267 | 5.4:+13785231 | MS.gene59474:CDS |
CTAGAGCTATTGGTCTGCTT+GGG | 0.450686 | 5.4:+13784547 | MS.gene59474:CDS |
TACCTTGTGTCAAGGCGATT+GGG | 0.456679 | 5.4:+13785510 | MS.gene59474:CDS |
AATATTATTAGGTTGCTTGT+TGG | 0.457699 | 5.4:+13784732 | MS.gene59474:CDS |
TCCCATATAAAACATAATAT+AGG | 0.465615 | 5.4:-13784348 | None:intergenic |
GTCGAAGCATTACGGAATCA+AGG | 0.467743 | 5.4:+13785282 | MS.gene59474:CDS |
ATACCTTGTGTCAAGGCGAT+TGG | 0.468143 | 5.4:+13785509 | MS.gene59474:CDS |
ATAGGTTCATTGGCTGCTAT+AGG | 0.468813 | 5.4:-13784330 | None:intergenic |
TCCAATGCTCCTAATGGTAA+TGG | 0.469488 | 5.4:+13785080 | MS.gene59474:CDS |
TCGCCACCGCGATCATCTGC+AGG | 0.471447 | 5.4:-13784291 | None:intergenic |
TGCTAATTATCCTAAATGTC+AGG | 0.473210 | 5.4:+13784692 | MS.gene59474:CDS |
TAAGGCAAGTATGAAGGAAA+TGG | 0.477354 | 5.4:+13785214 | MS.gene59474:CDS |
AATGGTTCAGATTCCAGCAT+TGG | 0.480050 | 5.4:+13785748 | MS.gene59474:CDS |
GGTAATGATGGTGGGAAGCA+AGG | 0.480315 | 5.4:+13785113 | MS.gene59474:CDS |
GCTCCTAATGGTAATGGTAA+TGG | 0.484797 | 5.4:+13785086 | MS.gene59474:CDS |
GCTCTATGGCATTTGGCTAA+AGG | 0.488413 | 5.4:+13785245 | MS.gene59474:CDS |
TCAACAACTGCTTTGCAGGC+AGG | 0.490161 | 5.4:-13785443 | None:intergenic |
CACGAGGTAGTGACCGATAT+GGG | 0.492243 | 5.4:+13784442 | MS.gene59474:CDS |
AATGGTAATGGTAATGGTAA+TGG | 0.493556 | 5.4:+13785092 | MS.gene59474:CDS |
ACATGGTCTGCTAGCTGGAT+CGG | 0.495682 | 5.4:-13783955 | None:intergenic |
TTTCTTGGTCTTTCACCCAA+TGG | 0.497956 | 5.4:-13784957 | None:intergenic |
GAAGGTCCTATGAAAGTTCA+AGG | 0.500103 | 5.4:+13784639 | MS.gene59474:CDS |
TGGTTCACAAGAAGTTCGTT+CGG | 0.500961 | 5.4:+13784392 | MS.gene59474:CDS |
TAAGAGAGCAGAACCAATGC+TGG | 0.501323 | 5.4:-13785761 | None:intergenic |
TCTTTGATCAGCTTCAAAAG+TGG | 0.503001 | 5.4:-13784495 | None:intergenic |
TCTACGAACGTCCAACAAAA+CGG | 0.504781 | 5.4:+13784091 | MS.gene59474:CDS |
AGATAGCGAGGAACTTGCTC+TGG | 0.506621 | 5.4:+13785802 | MS.gene59474:CDS |
TCTTGATGAAAGAGAGGCAG+AGG | 0.508935 | 5.4:+13785592 | MS.gene59474:CDS |
TCGCCTTGACACAAGGTATG+AGG | 0.510021 | 5.4:-13785505 | None:intergenic |
TGTTGGACGTTCGTAGAGAT+CGG | 0.512078 | 5.4:-13784085 | None:intergenic |
TTCTAATCTTAATCCCAAGA+AGG | 0.513107 | 5.4:+13784872 | MS.gene59474:CDS |
AAGTTCAAGGTGTTGTTGCT+TGG | 0.514095 | 5.4:+13784652 | MS.gene59474:CDS |
GGGAGGCGTCAATCGCGCTT+AGG | 0.516298 | 5.4:+13785621 | MS.gene59474:CDS |
AAGCTTATAATTGAAGAAGG+TGG | 0.518822 | 5.4:+13784465 | MS.gene59474:CDS |
GCATTCGGGGATTAACATGA+AGG | 0.520787 | 5.4:+13785166 | MS.gene59474:CDS |
GGTGCTTGGAGTGCTTGAAT+GGG | 0.524600 | 5.4:+13785829 | MS.gene59474:CDS |
CGTGTATCACATCATCCATT+GGG | 0.525964 | 5.4:+13784942 | MS.gene59474:CDS |
GAATTGTATTGCACAGCCTC+CGG | 0.526299 | 5.4:-13785341 | None:intergenic |
TCGTGTATCACATCATCCAT+TGG | 0.526957 | 5.4:+13784941 | MS.gene59474:CDS |
GCTTCCAAGCAGCCTAATGA+AGG | 0.529211 | 5.4:+13785020 | MS.gene59474:CDS |
GACAAGGATGATCGGTCCAT+TGG | 0.531120 | 5.4:+13785562 | MS.gene59474:CDS |
ATCAAAGAAGGGAAAGCTGA+TGG | 0.532152 | 5.4:+13784510 | MS.gene59474:CDS |
TTCTTGCAACAATTCTTCAA+GGG | 0.532402 | 5.4:-13785885 | None:intergenic |
GGTAATGGTAATGGTAATGA+TGG | 0.532931 | 5.4:+13785101 | MS.gene59474:CDS |
ATAAAGCTCCAACCTACTCT+TGG | 0.534128 | 5.4:-13785909 | None:intergenic |
ATGGTAATGGTAATGATGGT+GGG | 0.540034 | 5.4:+13785105 | MS.gene59474:CDS |
GGGAAGCTTATAATTGAAGA+AGG | 0.540686 | 5.4:+13784462 | MS.gene59474:CDS |
AATGGTAATGGTAATGATGG+TGG | 0.541312 | 5.4:+13785104 | MS.gene59474:CDS |
AACGAAGATGGTGTTGGTGT+TGG | 0.542799 | 5.4:+13784903 | MS.gene59474:CDS |
TCTAATCTTAATCCCAAGAA+GGG | 0.543141 | 5.4:+13784873 | MS.gene59474:CDS |
GAAGATGGTGTTGGTGTTGG+TGG | 0.544951 | 5.4:+13784906 | MS.gene59474:CDS |
CGAGGAACTTGCTCTGGCTG+AGG | 0.545445 | 5.4:+13785808 | MS.gene59474:CDS |
ATGTTGCATGAAAGATTGCT+TGG | 0.546277 | 5.4:-13785855 | None:intergenic |
TCCAAGGCAATCATAAGTGC+AGG | 0.551486 | 5.4:+13785683 | MS.gene59474:CDS |
TGAGACTAAGGCAAGTATGA+AGG | 0.552197 | 5.4:+13785208 | MS.gene59474:CDS |
TCGAAGCATTACGGAATCAA+GGG | 0.553633 | 5.4:+13785283 | MS.gene59474:CDS |
GGCAATCATAAGTGCAGGTG+GGG | 0.555744 | 5.4:+13785688 | MS.gene59474:CDS |
ATAATTGAAGAAGGTGGGGT+TGG | 0.561265 | 5.4:+13784471 | MS.gene59474:CDS |
GCTTATAATTGAAGAAGGTG+GGG | 0.562246 | 5.4:+13784467 | MS.gene59474:CDS |
GCAAGAAGCCAAGAGTAGGT+TGG | 0.565047 | 5.4:+13785901 | MS.gene59474:CDS |
AAGAGAGGCAGAGGTTTCAA+GGG | 0.568662 | 5.4:+13785601 | MS.gene59474:CDS |
TTGGAGCTTTATCAGTCTAG+AGG | 0.571086 | 5.4:+13785920 | MS.gene59474:CDS |
AAGGGAAATGAAAACGAAGA+TGG | 0.574888 | 5.4:+13784891 | MS.gene59474:CDS |
CTGAGAAAGATGCTGAATTG+AGG | 0.579995 | 5.4:+13785396 | MS.gene59474:CDS |
TTCCCAATCGCCTTGACACA+AGG | 0.582115 | 5.4:-13785512 | None:intergenic |
CGCCACCGCGATCATCTGCA+GGG | 0.587014 | 5.4:-13784290 | None:intergenic |
CGGGGATTAACATGAAGGGA+AGG | 0.588777 | 5.4:+13785171 | MS.gene59474:CDS |
TATCAGTCTAGAGGTTCAAG+AGG | 0.589279 | 5.4:+13785929 | MS.gene59474:CDS |
AGGCGATTGGGAATTTGGCA+AGG | 0.589920 | 5.4:+13785522 | MS.gene59474:CDS |
AAGGCAATCATAAGTGCAGG+TGG | 0.593242 | 5.4:+13785686 | MS.gene59474:CDS |
AAAACTTCTTGATGAAAGAG+AGG | 0.593947 | 5.4:+13785586 | MS.gene59474:CDS |
CCATCATAAATTGCATCAGT+AGG | 0.594100 | 5.4:+13785955 | MS.gene59474:CDS |
TGGTCTGCTTGGGCGTGACG+CGG | 0.597225 | 5.4:+13784557 | MS.gene59474:CDS |
GGTTCATTGGCTGCTATAGG+AGG | 0.604842 | 5.4:-13784327 | None:intergenic |
TGGACCGATCATCCTTGTCT+CGG | 0.604912 | 5.4:-13785558 | None:intergenic |
CATTCGGGGATTAACATGAA+GGG | 0.608292 | 5.4:+13785167 | MS.gene59474:CDS |
GAAGGCTGCAGCTGGTATGA+TGG | 0.608444 | 5.4:-13784202 | None:intergenic |
CCTTGGAGTGATCAACATGA+AGG | 0.610502 | 5.4:-13785667 | None:intergenic |
AGAGAAATTATTCGCATTCG+GGG | 0.615406 | 5.4:+13785153 | MS.gene59474:CDS |
TGTTGCAAGAAGCCAAGAGT+AGG | 0.617388 | 5.4:+13785897 | MS.gene59474:CDS |
GGGGATTAACATGAAGGGAA+GGG | 0.621193 | 5.4:+13785172 | MS.gene59474:CDS |
AGAGGCAGAGGTTTCAAGGG+AGG | 0.623603 | 5.4:+13785604 | MS.gene59474:CDS |
GCATTTGGCTAAAGGTAATG+TGG | 0.623690 | 5.4:+13785253 | MS.gene59474:CDS |
AGGCAATCATAAGTGCAGGT+GGG | 0.626281 | 5.4:+13785687 | MS.gene59474:CDS |
CTTTCAAGGCTACCGAGACA+AGG | 0.628110 | 5.4:+13785546 | MS.gene59474:CDS |
ATTGCATGTGCCAGATAGCG+AGG | 0.639123 | 5.4:+13785790 | MS.gene59474:CDS |
GCTACCGAGACAAGGATGAT+CGG | 0.639489 | 5.4:+13785554 | MS.gene59474:CDS |
AATGAAAACGAAGATGGTGT+TGG | 0.642607 | 5.4:+13784897 | MS.gene59474:CDS |
TCTCCTCATACCTTGTGTCA+AGG | 0.643488 | 5.4:+13785502 | MS.gene59474:CDS |
CCTTCATGTTGATCACTCCA+AGG | 0.647450 | 5.4:+13785667 | MS.gene59474:CDS |
TCACTTGTGTCATTGGCACG+AGG | 0.652546 | 5.4:+13784426 | MS.gene59474:CDS |
GTTGAACATATGATACATGT+TGG | 0.665595 | 5.4:+13784585 | MS.gene59474:CDS |
TCTGCCCCTGCAGATGATCG+CGG | 0.669789 | 5.4:+13784285 | MS.gene59474:CDS |
GGTGTTGGTGGCAATAAGCA+CGG | 0.670172 | 5.4:+13784918 | MS.gene59474:CDS |
GCCACCGCGATCATCTGCAG+GGG | 0.683333 | 5.4:-13784289 | None:intergenic |
TGTGCAATACAATTCCGCGA+TGG | 0.692726 | 5.4:+13785349 | MS.gene59474:CDS |
TTTACTTGAGAAAGGACCGG+AGG | 0.694179 | 5.4:+13785325 | MS.gene59474:CDS |
AATCTCCATCAACGCCATCG+CGG | 0.698736 | 5.4:-13785363 | None:intergenic |
GCCCCTGCAGATGATCGCGG+TGG | 0.706857 | 5.4:+13784288 | MS.gene59474:CDS |
ATTACTAGCCATAACAACAG+CGG | 0.731490 | 5.4:-13784829 | None:intergenic |
GGCGTTGATGGAGATTACTG+CGG | 0.755132 | 5.4:+13785370 | MS.gene59474:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AACCTATATTATGTTTTATA+TGG | + | chr5.4:13784346-13784365 | MS.gene59474:CDS | 15.0% |
!!! | ACCTATATTATGTTTTATAT+GGG | + | chr5.4:13784347-13784366 | MS.gene59474:CDS | 15.0% |
!! | AAAACATAATATAGGTTCAT+TGG | - | chr5.4:13784343-13784362 | None:intergenic | 20.0% |
!! | TCCCATATAAAACATAATAT+AGG | - | chr5.4:13784351-13784370 | None:intergenic | 20.0% |
! | TTGCTCAGCATAATATTATT+AGG | + | chr5.4:13784721-13784740 | MS.gene59474:CDS | 25.0% |
!! | AATATTATTAGGTTGCTTGT+TGG | + | chr5.4:13784732-13784751 | MS.gene59474:CDS | 25.0% |
AAAACTTCTTGATGAAAGAG+AGG | + | chr5.4:13785586-13785605 | MS.gene59474:CDS | 30.0% | |
AAGCTTATAATTGAAGAAGG+TGG | + | chr5.4:13784465-13784484 | MS.gene59474:CDS | 30.0% | |
AGCTTATAATTGAAGAAGGT+GGG | + | chr5.4:13784466-13784485 | MS.gene59474:CDS | 30.0% | |
ATCACTCTATGCAAATTTCT+TGG | - | chr5.4:13784975-13784994 | None:intergenic | 30.0% | |
CAATTATAAGCTTCCCATAT+CGG | - | chr5.4:13784458-13784477 | None:intergenic | 30.0% | |
GATAATTGAGAAAGCAGATT+CGG | + | chr5.4:13785478-13785497 | MS.gene59474:CDS | 30.0% | |
GTTGAACATATGATACATGT+TGG | + | chr5.4:13784585-13784604 | MS.gene59474:CDS | 30.0% | |
TCAGAGAAATTATTCGCATT+CGG | + | chr5.4:13785151-13785170 | MS.gene59474:CDS | 30.0% | |
TCTAATCTTAATCCCAAGAA+GGG | + | chr5.4:13784873-13784892 | MS.gene59474:CDS | 30.0% | |
TGCTAATTATCCTAAATGTC+AGG | + | chr5.4:13784692-13784711 | MS.gene59474:CDS | 30.0% | |
TTACCATTACCATTACCATT+AGG | - | chr5.4:13785092-13785111 | None:intergenic | 30.0% | |
TTCGCGAAAATTCTTAAAGA+AGG | + | chr5.4:13784621-13784640 | MS.gene59474:CDS | 30.0% | |
TTCTAATCTTAATCCCAAGA+AGG | + | chr5.4:13784872-13784891 | MS.gene59474:CDS | 30.0% | |
TTCTTGCAACAATTCTTCAA+GGG | - | chr5.4:13785888-13785907 | None:intergenic | 30.0% | |
! | AATAGCGAGTTTTTCTGTTT+TGG | - | chr5.4:13784037-13784056 | None:intergenic | 30.0% |
! | ACCAATAGAGTTTTCTAGAT+GGG | - | chr5.4:13784241-13784260 | None:intergenic | 30.0% |
! | TCATCAAGAAGTTTTACCAA+TGG | - | chr5.4:13785581-13785600 | None:intergenic | 30.0% |
! | TTGATTCAGCTTGTGTATTT+TGG | + | chr5.4:13785719-13785738 | MS.gene59474:CDS | 30.0% |
!! | AATGGTAATGGTAATGGTAA+TGG | + | chr5.4:13785092-13785111 | MS.gene59474:CDS | 30.0% |
!! | TGTGTATTTTGGAGAACAAA+TGG | + | chr5.4:13785730-13785749 | MS.gene59474:CDS | 30.0% |
!!! | TTTAGCTTTTGAAACTGTTG+AGG | + | chr5.4:13784758-13784777 | MS.gene59474:CDS | 30.0% |
!!! | TTTGCTGTTTTACTTGAGAA+AGG | + | chr5.4:13785317-13785336 | MS.gene59474:CDS | 30.0% |
!!! | TTTTGAAGCTGATCAAAGAA+GGG | + | chr5.4:13784499-13784518 | MS.gene59474:CDS | 30.0% |
AAAAACTCGCTATTCTTCTC+CGG | + | chr5.4:13784043-13784062 | MS.gene59474:CDS | 35.0% | |
AAGGGAAATGAAAACGAAGA+TGG | + | chr5.4:13784891-13784910 | MS.gene59474:CDS | 35.0% | |
AATGAAAACGAAGATGGTGT+TGG | + | chr5.4:13784897-13784916 | MS.gene59474:CDS | 35.0% | |
ACAACACCTTGAACTTTCAT+AGG | - | chr5.4:13784648-13784667 | None:intergenic | 35.0% | |
AGAGAAATTATTCGCATTCG+GGG | + | chr5.4:13785153-13785172 | MS.gene59474:CDS | 35.0% | |
ATGTTGCATGAAAGATTGCT+TGG | - | chr5.4:13785858-13785877 | None:intergenic | 35.0% | |
ATTACTAGCCATAACAACAG+CGG | - | chr5.4:13784832-13784851 | None:intergenic | 35.0% | |
CAGAGAAATTATTCGCATTC+GGG | + | chr5.4:13785152-13785171 | MS.gene59474:CDS | 35.0% | |
CAGATCGCTATGTTATATAC+TGG | + | chr5.4:13784372-13784391 | MS.gene59474:CDS | 35.0% | |
CTTCTTGCAACAATTCTTCA+AGG | - | chr5.4:13785889-13785908 | None:intergenic | 35.0% | |
CTTGCTTCATTTCCTTCATT+AGG | - | chr5.4:13785035-13785054 | None:intergenic | 35.0% | |
GCTTATAATTGAAGAAGGTG+GGG | + | chr5.4:13784467-13784486 | MS.gene59474:CDS | 35.0% | |
GGGAAGCTTATAATTGAAGA+AGG | + | chr5.4:13784462-13784481 | MS.gene59474:CDS | 35.0% | |
TAAGGCAAGTATGAAGGAAA+TGG | + | chr5.4:13785214-13785233 | MS.gene59474:CDS | 35.0% | |
TAGAGTGATCACAAGTACTA+TGG | + | chr5.4:13784986-13785005 | MS.gene59474:CDS | 35.0% | |
TCCCATCTAGAAAACTCTAT+TGG | + | chr5.4:13784237-13784256 | MS.gene59474:CDS | 35.0% | |
TCTTTGATCAGCTTCAAAAG+TGG | - | chr5.4:13784498-13784517 | None:intergenic | 35.0% | |
! | CACCAATAGAGTTTTCTAGA+TGG | - | chr5.4:13784242-13784261 | None:intergenic | 35.0% |
! | CTAGATGGGAAGATGTTTTA+CGG | - | chr5.4:13784227-13784246 | None:intergenic | 35.0% |
! | TCGTTTTCATTTCCCTTCTT+GGG | - | chr5.4:13784888-13784907 | None:intergenic | 35.0% |
! | TGTTTTACTTGAGAAAGGAC+CGG | + | chr5.4:13785322-13785341 | MS.gene59474:CDS | 35.0% |
! | TTCGTTTTCATTTCCCTTCT+TGG | - | chr5.4:13784889-13784908 | None:intergenic | 35.0% |
!! | AATGGTAATGGTAATGATGG+TGG | + | chr5.4:13785104-13785123 | MS.gene59474:CDS | 35.0% |
!! | ACTCTATTGGTGATGTTTCA+TGG | + | chr5.4:13784250-13784269 | MS.gene59474:CDS | 35.0% |
!! | ATGGTAATGGTAATGATGGT+GGG | + | chr5.4:13785105-13785124 | MS.gene59474:CDS | 35.0% |
!! | GGTAATGGTAATGGTAATGA+TGG | + | chr5.4:13785101-13785120 | MS.gene59474:CDS | 35.0% |
!!! | CTTTTGAAGCTGATCAAAGA+AGG | + | chr5.4:13784498-13784517 | MS.gene59474:CDS | 35.0% |
AATGGTTCAGATTCCAGCAT+TGG | + | chr5.4:13785748-13785767 | MS.gene59474:CDS | 40.0% | |
ACCAATTCCAATGCTCCTAA+TGG | + | chr5.4:13785074-13785093 | MS.gene59474:CDS | 40.0% | |
ATAAAGCTCCAACCTACTCT+TGG | - | chr5.4:13785912-13785931 | None:intergenic | 40.0% | |
ATAATTGAAGAAGGTGGGGT+TGG | + | chr5.4:13784471-13784490 | MS.gene59474:CDS | 40.0% | |
ATCAAAGAAGGGAAAGCTGA+TGG | + | chr5.4:13784510-13784529 | MS.gene59474:CDS | 40.0% | |
ATCTGAAGATGCTGAGACTA+AGG | + | chr5.4:13785196-13785215 | MS.gene59474:CDS | 40.0% | |
ATTTCCTTCATTAGGCTGCT+TGG | - | chr5.4:13785027-13785046 | None:intergenic | 40.0% | |
CATTCGGGGATTAACATGAA+GGG | + | chr5.4:13785167-13785186 | MS.gene59474:CDS | 40.0% | |
CGTGTATCACATCATCCATT+GGG | + | chr5.4:13784942-13784961 | MS.gene59474:CDS | 40.0% | |
CTGAGAAAGATGCTGAATTG+AGG | + | chr5.4:13785396-13785415 | MS.gene59474:CDS | 40.0% | |
GAAGGTCCTATGAAAGTTCA+AGG | + | chr5.4:13784639-13784658 | MS.gene59474:CDS | 40.0% | |
GAATTTGGCAAGGACTTTCA+AGG | + | chr5.4:13785532-13785551 | MS.gene59474:CDS | 40.0% | |
GCAAAGAGTTCCTGACATTT+AGG | - | chr5.4:13784705-13784724 | None:intergenic | 40.0% | |
GCATTTGGCTAAAGGTAATG+TGG | + | chr5.4:13785253-13785272 | MS.gene59474:CDS | 40.0% | |
GTCCTAAAATGTCGTGCTAA+TGG | + | chr5.4:13784159-13784178 | MS.gene59474:CDS | 40.0% | |
TATCAGTCTAGAGGTTCAAG+AGG | + | chr5.4:13785929-13785948 | MS.gene59474:CDS | 40.0% | |
TCCAATGCTCCTAATGGTAA+TGG | + | chr5.4:13785080-13785099 | MS.gene59474:CDS | 40.0% | |
TCGTGTATCACATCATCCAT+TGG | + | chr5.4:13784941-13784960 | MS.gene59474:CDS | 40.0% | |
TCTACGAACGTCCAACAAAA+CGG | + | chr5.4:13784091-13784110 | MS.gene59474:CDS | 40.0% | |
TGAGACTAAGGCAAGTATGA+AGG | + | chr5.4:13785208-13785227 | MS.gene59474:CDS | 40.0% | |
TGGTTCACAAGAAGTTCGTT+CGG | + | chr5.4:13784392-13784411 | MS.gene59474:CDS | 40.0% | |
TTGATCAACAACTGCTTTGC+AGG | - | chr5.4:13785450-13785469 | None:intergenic | 40.0% | |
! | ACCATTACCATTAGGAGCAT+TGG | - | chr5.4:13785084-13785103 | None:intergenic | 40.0% |
! | ATAGGTTCATTGGCTGCTAT+AGG | - | chr5.4:13784333-13784352 | None:intergenic | 40.0% |
! | ATGAAGGTAGTTTTCACTGC+CGG | - | chr5.4:13785654-13785673 | None:intergenic | 40.0% |
! | ATGGGAAGATGTTTTACGGA+AGG | - | chr5.4:13784223-13784242 | None:intergenic | 40.0% |
! | GACCATTAGCACGACATTTT+AGG | - | chr5.4:13784164-13784183 | None:intergenic | 40.0% |
! | GGCAATTTGTCGAAGCATTA+CGG | + | chr5.4:13785274-13785293 | MS.gene59474:CDS | 40.0% |
! | TCGAAGCATTACGGAATCAA+GGG | + | chr5.4:13785283-13785302 | MS.gene59474:CDS | 40.0% |
! | TCTTCGATGATCCGTTTTGT+TGG | - | chr5.4:13784105-13784124 | None:intergenic | 40.0% |
! | TTGGAGCTTTATCAGTCTAG+AGG | + | chr5.4:13785920-13785939 | MS.gene59474:CDS | 40.0% |
! | TTTCTTGGTCTTTCACCCAA+TGG | - | chr5.4:13784960-13784979 | None:intergenic | 40.0% |
!! | AAGTTCAAGGTGTTGTTGCT+TGG | + | chr5.4:13784652-13784671 | MS.gene59474:CDS | 40.0% |
!! | ACCATTAGGAGCATTGGAAT+TGG | - | chr5.4:13785078-13785097 | None:intergenic | 40.0% |
!! | AGTTCAAGGTGTTGTTGCTT+GGG | + | chr5.4:13784653-13784672 | MS.gene59474:CDS | 40.0% |
!! | GCTCCTAATGGTAATGGTAA+TGG | + | chr5.4:13785086-13785105 | MS.gene59474:CDS | 40.0% |
!!! | CATCTGCTGCTTTTGTTACA+TGG | - | chr5.4:13783975-13783994 | None:intergenic | 40.0% |
AAAGAGAGGCAGAGGTTTCA+AGG | + | chr5.4:13785600-13785619 | MS.gene59474:CDS | 45.0% | |
AAATGGCAGCAAGAGCTCTA+TGG | + | chr5.4:13785231-13785250 | MS.gene59474:CDS | 45.0% | |
AAGAGAGGCAGAGGTTTCAA+GGG | + | chr5.4:13785601-13785620 | MS.gene59474:CDS | 45.0% | |
AAGGCAATCATAAGTGCAGG+TGG | + | chr5.4:13785686-13785705 | MS.gene59474:CDS | 45.0% | |
ACCTGCACTTATGATTGCCT+TGG | - | chr5.4:13785687-13785706 | None:intergenic | 45.0% | |
AGCAAGAGCTCTATGGCATT+TGG | + | chr5.4:13785238-13785257 | MS.gene59474:CDS | 45.0% | |
AGCTGCTTCACTTGTGTCAT+TGG | + | chr5.4:13784419-13784438 | MS.gene59474:CDS | 45.0% | |
AGGCAATCATAAGTGCAGGT+GGG | + | chr5.4:13785687-13785706 | MS.gene59474:CDS | 45.0% | |
ATACCTTGTGTCAAGGCGAT+TGG | + | chr5.4:13785509-13785528 | MS.gene59474:CDS | 45.0% | |
ATCGCGCTTAGGAAATTTGC+CGG | + | chr5.4:13785632-13785651 | MS.gene59474:CDS | 45.0% | |
CCTTCATGTTGATCACTCCA+AGG | + | chr5.4:13785667-13785686 | MS.gene59474:CDS | 45.0% | |
CCTTGGAGTGATCAACATGA+AGG | - | chr5.4:13785670-13785689 | None:intergenic | 45.0% | |
GAATTGTATTGCACAGCCTC+CGG | - | chr5.4:13785344-13785363 | None:intergenic | 45.0% | |
GAGAATGCTGCTAGAGCTAT+TGG | + | chr5.4:13784537-13784556 | MS.gene59474:CDS | 45.0% | |
GCATTCGGGGATTAACATGA+AGG | + | chr5.4:13785166-13785185 | MS.gene59474:CDS | 45.0% | |
GCTCTATGGCATTTGGCTAA+AGG | + | chr5.4:13785245-13785264 | MS.gene59474:CDS | 45.0% | |
GGGGATTAACATGAAGGGAA+GGG | + | chr5.4:13785172-13785191 | MS.gene59474:CDS | 45.0% | |
TAAGAGAGCAGAACCAATGC+TGG | - | chr5.4:13785764-13785783 | None:intergenic | 45.0% | |
TACCTTGTGTCAAGGCGATT+GGG | + | chr5.4:13785510-13785529 | MS.gene59474:CDS | 45.0% | |
TCCAAGGCAATCATAAGTGC+AGG | + | chr5.4:13785683-13785702 | MS.gene59474:CDS | 45.0% | |
TCTCCTCATACCTTGTGTCA+AGG | + | chr5.4:13785502-13785521 | MS.gene59474:CDS | 45.0% | |
TCTTGATGAAAGAGAGGCAG+AGG | + | chr5.4:13785592-13785611 | MS.gene59474:CDS | 45.0% | |
TGTCAAGGCGATTGGGAATT+TGG | + | chr5.4:13785517-13785536 | MS.gene59474:CDS | 45.0% | |
TGTGCAATACAATTCCGCGA+TGG | + | chr5.4:13785349-13785368 | MS.gene59474:CDS | 45.0% | |
TGTTGCAAGAAGCCAAGAGT+AGG | + | chr5.4:13785897-13785916 | MS.gene59474:CDS | 45.0% | |
TGTTGGACGTTCGTAGAGAT+CGG | - | chr5.4:13784088-13784107 | None:intergenic | 45.0% | |
TTGTTACATGGTCTGCTAGC+TGG | - | chr5.4:13783963-13783982 | None:intergenic | 45.0% | |
TTTACTTGAGAAAGGACCGG+AGG | + | chr5.4:13785325-13785344 | MS.gene59474:CDS | 45.0% | |
! | CTAGAGCTATTGGTCTGCTT+GGG | + | chr5.4:13784547-13784566 | MS.gene59474:CDS | 45.0% |
! | GTCGAAGCATTACGGAATCA+AGG | + | chr5.4:13785282-13785301 | MS.gene59474:CDS | 45.0% |
!! | AACGAAGATGGTGTTGGTGT+TGG | + | chr5.4:13784903-13784922 | MS.gene59474:CDS | 45.0% |
AATCTCCATCAACGCCATCG+CGG | - | chr5.4:13785366-13785385 | None:intergenic | 50.0% | |
ACATGGTCTGCTAGCTGGAT+CGG | - | chr5.4:13783958-13783977 | None:intergenic | 50.0% | |
AGAGCAAGTTCCTCGCTATC+TGG | - | chr5.4:13785803-13785822 | None:intergenic | 50.0% | |
AGGCGATTGGGAATTTGGCA+AGG | + | chr5.4:13785522-13785541 | MS.gene59474:CDS | 50.0% | |
ATTGCATGTGCCAGATAGCG+AGG | + | chr5.4:13785790-13785809 | MS.gene59474:CDS | 50.0% | |
CACGAGGTAGTGACCGATAT+GGG | + | chr5.4:13784442-13784461 | MS.gene59474:CDS | 50.0% | |
CGGGGATTAACATGAAGGGA+AGG | + | chr5.4:13785171-13785190 | MS.gene59474:CDS | 50.0% | |
CTTTCAAGGCTACCGAGACA+AGG | + | chr5.4:13785546-13785565 | MS.gene59474:CDS | 50.0% | |
GACAAGGATGATCGGTCCAT+TGG | + | chr5.4:13785562-13785581 | MS.gene59474:CDS | 50.0% | |
GATTCACGCCGCTGTTGTTA+TGG | + | chr5.4:13784821-13784840 | MS.gene59474:CDS | 50.0% | |
GCAAGAAGCCAAGAGTAGGT+TGG | + | chr5.4:13785901-13785920 | MS.gene59474:CDS | 50.0% | |
GCTACCGAGACAAGGATGAT+CGG | + | chr5.4:13785554-13785573 | MS.gene59474:CDS | 50.0% | |
GCTTCCAAGCAGCCTAATGA+AGG | + | chr5.4:13785020-13785039 | MS.gene59474:CDS | 50.0% | |
GCTTTGCAGGCAGGAGAATT+AGG | - | chr5.4:13785437-13785456 | None:intergenic | 50.0% | |
GGCAATCATAAGTGCAGGTG+GGG | + | chr5.4:13785688-13785707 | MS.gene59474:CDS | 50.0% | |
TCAACAACTGCTTTGCAGGC+AGG | - | chr5.4:13785446-13785465 | None:intergenic | 50.0% | |
TCGCCTTGACACAAGGTATG+AGG | - | chr5.4:13785508-13785527 | None:intergenic | 50.0% | |
TGGACCGATCATCCTTGTCT+CGG | - | chr5.4:13785561-13785580 | None:intergenic | 50.0% | |
TTCCCAATCGCCTTGACACA+AGG | - | chr5.4:13785515-13785534 | None:intergenic | 50.0% | |
! | AGATAGCGAGGAACTTGCTC+TGG | + | chr5.4:13785802-13785821 | MS.gene59474:CDS | 50.0% |
! | AGGTGCTTGGAGTGCTTGAA+TGG | + | chr5.4:13785828-13785847 | MS.gene59474:CDS | 50.0% |
! | GCTAGAGCTATTGGTCTGCT+TGG | + | chr5.4:13784546-13784565 | MS.gene59474:CDS | 50.0% |
! | GGTGCTTGGAGTGCTTGAAT+GGG | + | chr5.4:13785829-13785848 | MS.gene59474:CDS | 50.0% |
! | GGTTCATTGGCTGCTATAGG+AGG | - | chr5.4:13784330-13784349 | None:intergenic | 50.0% |
! | TCACTTGTGTCATTGGCACG+AGG | + | chr5.4:13784426-13784445 | MS.gene59474:CDS | 50.0% |
!! | GAAGATGGTGTTGGTGTTGG+TGG | + | chr5.4:13784906-13784925 | MS.gene59474:CDS | 50.0% |
!! | GGCGTTGATGGAGATTACTG+CGG | + | chr5.4:13785370-13785389 | MS.gene59474:CDS | 50.0% |
!! | GGTAATGATGGTGGGAAGCA+AGG | + | chr5.4:13785113-13785132 | MS.gene59474:CDS | 50.0% |
!! | GGTGTTGGTGGCAATAAGCA+CGG | + | chr5.4:13784918-13784937 | MS.gene59474:CDS | 50.0% |
AGAGGCAGAGGTTTCAAGGG+AGG | + | chr5.4:13785604-13785623 | MS.gene59474:CDS | 55.0% | |
GAAGGCTGCAGCTGGTATGA+TGG | - | chr5.4:13784205-13784224 | None:intergenic | 55.0% | |
GCACGAGGTAGTGACCGATA+TGG | + | chr5.4:13784441-13784460 | MS.gene59474:CDS | 55.0% | |
! | CAATTCCGCGATGGCGTTGA+TGG | + | chr5.4:13785358-13785377 | MS.gene59474:CDS | 55.0% |
! | GTTTTACGGAAGGCTGCAGC+TGG | - | chr5.4:13784213-13784232 | None:intergenic | 55.0% |
GATCGCGGTGGCGAGTATCT+AGG | + | chr5.4:13784300-13784319 | MS.gene59474:CDS | 60.0% | |
TCTGCCCCTGCAGATGATCG+CGG | + | chr5.4:13784285-13784304 | MS.gene59474:CDS | 60.0% | |
! | AGCTCGCTCTTGCTGCTTGC+CGG | - | chr5.4:13784065-13784084 | None:intergenic | 60.0% |
! | CGAGGAACTTGCTCTGGCTG+AGG | + | chr5.4:13785808-13785827 | MS.gene59474:CDS | 60.0% |
! | CTTGCTCTGGCTGAGGTGCT+TGG | + | chr5.4:13785815-13785834 | MS.gene59474:CDS | 60.0% |
CGCCACCGCGATCATCTGCA+GGG | - | chr5.4:13784293-13784312 | None:intergenic | 65.0% | |
GCCACCGCGATCATCTGCAG+GGG | - | chr5.4:13784292-13784311 | None:intergenic | 65.0% | |
TCGCCACCGCGATCATCTGC+AGG | - | chr5.4:13784294-13784313 | None:intergenic | 65.0% | |
TGGTCTGCTTGGGCGTGACG+CGG | + | chr5.4:13784557-13784576 | MS.gene59474:CDS | 65.0% | |
!! | GGGAGGCGTCAATCGCGCTT+AGG | + | chr5.4:13785621-13785640 | MS.gene59474:CDS | 65.0% |
GCCCCTGCAGATGATCGCGG+TGG | + | chr5.4:13784288-13784307 | MS.gene59474:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 13783922 | 13785976 | 13783922 | ID=MS.gene59474 |
chr5.4 | mRNA | 13783922 | 13785976 | 13783922 | ID=MS.gene59474.t1;Parent=MS.gene59474 |
chr5.4 | exon | 13783922 | 13785976 | 13783922 | ID=MS.gene59474.t1.exon1;Parent=MS.gene59474.t1 |
chr5.4 | CDS | 13783922 | 13785976 | 13783922 | ID=cds.MS.gene59474.t1;Parent=MS.gene59474.t1 |
Gene Sequence |
Protein sequence |