AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59474


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59474.t1 MTR_5g022240 97.242 689 12 3 1 684 1 687 0.0 1360
MS.gene59474.t1 MTR_8g075770 72.110 692 160 11 1 684 1 667 0.0 924
MS.gene59474.t1 MTR_4g073830 64.317 681 213 7 1 679 1 653 0.0 850
MS.gene59474.t1 MTR_0064s0050 63.889 216 77 1 1 215 1 216 3.31e-82 260
MS.gene59474.t1 MTR_0064s0010 60.386 207 81 1 1 206 1 207 6.74e-77 246
MS.gene59474.t1 MTR_1g046850 51.754 228 99 4 5 231 8 225 1.78e-65 220
MS.gene59474.t1 MTR_1g046850 63.095 84 30 1 133 215 209 292 5.84e-22 98.6
MS.gene59474.t1 MTR_5g033190 42.403 283 159 2 391 672 322 601 6.45e-57 204
MS.gene59474.t1 MTR_5g033190 40.893 291 160 7 9 289 14 302 1.35e-53 194
MS.gene59474.t1 MTR_0116s0040 54.787 188 78 2 1 187 1 182 2.63e-53 182
MS.gene59474.t1 MTR_4g105110 41.199 267 152 5 418 682 328 591 5.71e-51 187
MS.gene59474.t1 MTR_4g105110 34.737 285 171 6 12 285 23 303 2.57e-38 150
MS.gene59474.t1 MTR_4g105110 41.199 267 152 5 418 682 329 592 6.28e-51 187
MS.gene59474.t1 MTR_4g105110 34.737 285 171 6 12 285 24 304 2.57e-38 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59474.t1 AT5G66200 69.501 682 172 7 1 679 1 649 0.0 924
MS.gene59474.t1 AT4G34940 66.471 683 206 7 1 679 1 664 0.0 879
MS.gene59474.t1 AT4G36030 62.754 690 225 11 1 679 1 669 0.0 791
MS.gene59474.t1 AT3G26600 36.637 666 332 9 16 672 19 603 4.43e-113 353
MS.gene59474.t1 AT3G26600 45.725 269 140 3 415 682 265 528 4.71e-59 208
MS.gene59474.t1 AT3G26600 42.424 198 106 3 16 205 19 216 1.03e-38 151

Find 149 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTCAGCTTGTGTATTT+TGG 0.146923 5.4:+13785719 MS.gene59474:CDS
TGTCAAGGCGATTGGGAATT+TGG 0.151106 5.4:+13785517 MS.gene59474:CDS
TTGCTCAGCATAATATTATT+AGG 0.225996 5.4:+13784721 MS.gene59474:CDS
TTGATCAACAACTGCTTTGC+AGG 0.251405 5.4:-13785447 None:intergenic
GCAAAGAGTTCCTGACATTT+AGG 0.255218 5.4:-13784702 None:intergenic
GCTTTGCAGGCAGGAGAATT+AGG 0.264501 5.4:-13785434 None:intergenic
ATCACTCTATGCAAATTTCT+TGG 0.297566 5.4:-13784972 None:intergenic
AGCTCGCTCTTGCTGCTTGC+CGG 0.315337 5.4:-13784062 None:intergenic
CAATTCCGCGATGGCGTTGA+TGG 0.331761 5.4:+13785358 MS.gene59474:CDS
CAGAGAAATTATTCGCATTC+GGG 0.332509 5.4:+13785152 MS.gene59474:CDS
ACTCTATTGGTGATGTTTCA+TGG 0.338825 5.4:+13784250 MS.gene59474:CDS
GATTCACGCCGCTGTTGTTA+TGG 0.342302 5.4:+13784821 MS.gene59474:CDS
ACCAATTCCAATGCTCCTAA+TGG 0.348391 5.4:+13785074 MS.gene59474:CDS
CTTGCTTCATTTCCTTCATT+AGG 0.360142 5.4:-13785032 None:intergenic
AGCTGCTTCACTTGTGTCAT+TGG 0.363225 5.4:+13784419 MS.gene59474:CDS
AGAGCAAGTTCCTCGCTATC+TGG 0.364154 5.4:-13785800 None:intergenic
TTGTTACATGGTCTGCTAGC+TGG 0.367669 5.4:-13783960 None:intergenic
GGCAATTTGTCGAAGCATTA+CGG 0.368542 5.4:+13785274 MS.gene59474:CDS
CTTCTTGCAACAATTCTTCA+AGG 0.380322 5.4:-13785886 None:intergenic
GTCCTAAAATGTCGTGCTAA+TGG 0.380665 5.4:+13784159 MS.gene59474:CDS
TCAGAGAAATTATTCGCATT+CGG 0.383621 5.4:+13785151 MS.gene59474:CDS
ACAACACCTTGAACTTTCAT+AGG 0.383942 5.4:-13784645 None:intergenic
AGGTGCTTGGAGTGCTTGAA+TGG 0.387693 5.4:+13785828 MS.gene59474:CDS
CTTGCTCTGGCTGAGGTGCT+TGG 0.395280 5.4:+13785815 MS.gene59474:CDS
GAGAATGCTGCTAGAGCTAT+TGG 0.402152 5.4:+13784537 MS.gene59474:CDS
GCACGAGGTAGTGACCGATA+TGG 0.402172 5.4:+13784441 MS.gene59474:CDS
CAATTATAAGCTTCCCATAT+CGG 0.403187 5.4:-13784455 None:intergenic
ACCATTAGGAGCATTGGAAT+TGG 0.404098 5.4:-13785075 None:intergenic
TTACCATTACCATTACCATT+AGG 0.404689 5.4:-13785089 None:intergenic
AGTTCAAGGTGTTGTTGCTT+GGG 0.407438 5.4:+13784653 MS.gene59474:CDS
AGCTTATAATTGAAGAAGGT+GGG 0.409005 5.4:+13784466 MS.gene59474:CDS
AAAACATAATATAGGTTCAT+TGG 0.409008 5.4:-13784340 None:intergenic
AAAGAGAGGCAGAGGTTTCA+AGG 0.409279 5.4:+13785600 MS.gene59474:CDS
ATCTGAAGATGCTGAGACTA+AGG 0.412017 5.4:+13785196 MS.gene59474:CDS
GCTAGAGCTATTGGTCTGCT+TGG 0.416289 5.4:+13784546 MS.gene59474:CDS
AGCAAGAGCTCTATGGCATT+TGG 0.418524 5.4:+13785238 MS.gene59474:CDS
ATTTCCTTCATTAGGCTGCT+TGG 0.418757 5.4:-13785024 None:intergenic
CCTACTGATGCAATTTATGA+TGG 0.419434 5.4:-13785955 None:intergenic
ACCATTACCATTAGGAGCAT+TGG 0.421821 5.4:-13785081 None:intergenic
TTCGCGAAAATTCTTAAAGA+AGG 0.423742 5.4:+13784621 MS.gene59474:CDS
TCCCATCTAGAAAACTCTAT+TGG 0.424874 5.4:+13784237 MS.gene59474:CDS
ATCGCGCTTAGGAAATTTGC+CGG 0.426553 5.4:+13785632 MS.gene59474:CDS
GATAATTGAGAAAGCAGATT+CGG 0.429925 5.4:+13785478 MS.gene59474:CDS
CAGATCGCTATGTTATATAC+TGG 0.431500 5.4:+13784372 MS.gene59474:CDS
TAGAGTGATCACAAGTACTA+TGG 0.435778 5.4:+13784986 MS.gene59474:CDS
GATCGCGGTGGCGAGTATCT+AGG 0.436368 5.4:+13784300 MS.gene59474:CDS
ACCTGCACTTATGATTGCCT+TGG 0.442127 5.4:-13785684 None:intergenic
GAATTTGGCAAGGACTTTCA+AGG 0.444243 5.4:+13785532 MS.gene59474:CDS
AAATGGCAGCAAGAGCTCTA+TGG 0.447267 5.4:+13785231 MS.gene59474:CDS
CTAGAGCTATTGGTCTGCTT+GGG 0.450686 5.4:+13784547 MS.gene59474:CDS
TACCTTGTGTCAAGGCGATT+GGG 0.456679 5.4:+13785510 MS.gene59474:CDS
AATATTATTAGGTTGCTTGT+TGG 0.457699 5.4:+13784732 MS.gene59474:CDS
TCCCATATAAAACATAATAT+AGG 0.465615 5.4:-13784348 None:intergenic
GTCGAAGCATTACGGAATCA+AGG 0.467743 5.4:+13785282 MS.gene59474:CDS
ATACCTTGTGTCAAGGCGAT+TGG 0.468143 5.4:+13785509 MS.gene59474:CDS
ATAGGTTCATTGGCTGCTAT+AGG 0.468813 5.4:-13784330 None:intergenic
TCCAATGCTCCTAATGGTAA+TGG 0.469488 5.4:+13785080 MS.gene59474:CDS
TCGCCACCGCGATCATCTGC+AGG 0.471447 5.4:-13784291 None:intergenic
TGCTAATTATCCTAAATGTC+AGG 0.473210 5.4:+13784692 MS.gene59474:CDS
TAAGGCAAGTATGAAGGAAA+TGG 0.477354 5.4:+13785214 MS.gene59474:CDS
AATGGTTCAGATTCCAGCAT+TGG 0.480050 5.4:+13785748 MS.gene59474:CDS
GGTAATGATGGTGGGAAGCA+AGG 0.480315 5.4:+13785113 MS.gene59474:CDS
GCTCCTAATGGTAATGGTAA+TGG 0.484797 5.4:+13785086 MS.gene59474:CDS
GCTCTATGGCATTTGGCTAA+AGG 0.488413 5.4:+13785245 MS.gene59474:CDS
TCAACAACTGCTTTGCAGGC+AGG 0.490161 5.4:-13785443 None:intergenic
CACGAGGTAGTGACCGATAT+GGG 0.492243 5.4:+13784442 MS.gene59474:CDS
AATGGTAATGGTAATGGTAA+TGG 0.493556 5.4:+13785092 MS.gene59474:CDS
ACATGGTCTGCTAGCTGGAT+CGG 0.495682 5.4:-13783955 None:intergenic
TTTCTTGGTCTTTCACCCAA+TGG 0.497956 5.4:-13784957 None:intergenic
GAAGGTCCTATGAAAGTTCA+AGG 0.500103 5.4:+13784639 MS.gene59474:CDS
TGGTTCACAAGAAGTTCGTT+CGG 0.500961 5.4:+13784392 MS.gene59474:CDS
TAAGAGAGCAGAACCAATGC+TGG 0.501323 5.4:-13785761 None:intergenic
TCTTTGATCAGCTTCAAAAG+TGG 0.503001 5.4:-13784495 None:intergenic
TCTACGAACGTCCAACAAAA+CGG 0.504781 5.4:+13784091 MS.gene59474:CDS
AGATAGCGAGGAACTTGCTC+TGG 0.506621 5.4:+13785802 MS.gene59474:CDS
TCTTGATGAAAGAGAGGCAG+AGG 0.508935 5.4:+13785592 MS.gene59474:CDS
TCGCCTTGACACAAGGTATG+AGG 0.510021 5.4:-13785505 None:intergenic
TGTTGGACGTTCGTAGAGAT+CGG 0.512078 5.4:-13784085 None:intergenic
TTCTAATCTTAATCCCAAGA+AGG 0.513107 5.4:+13784872 MS.gene59474:CDS
AAGTTCAAGGTGTTGTTGCT+TGG 0.514095 5.4:+13784652 MS.gene59474:CDS
GGGAGGCGTCAATCGCGCTT+AGG 0.516298 5.4:+13785621 MS.gene59474:CDS
AAGCTTATAATTGAAGAAGG+TGG 0.518822 5.4:+13784465 MS.gene59474:CDS
GCATTCGGGGATTAACATGA+AGG 0.520787 5.4:+13785166 MS.gene59474:CDS
GGTGCTTGGAGTGCTTGAAT+GGG 0.524600 5.4:+13785829 MS.gene59474:CDS
CGTGTATCACATCATCCATT+GGG 0.525964 5.4:+13784942 MS.gene59474:CDS
GAATTGTATTGCACAGCCTC+CGG 0.526299 5.4:-13785341 None:intergenic
TCGTGTATCACATCATCCAT+TGG 0.526957 5.4:+13784941 MS.gene59474:CDS
GCTTCCAAGCAGCCTAATGA+AGG 0.529211 5.4:+13785020 MS.gene59474:CDS
GACAAGGATGATCGGTCCAT+TGG 0.531120 5.4:+13785562 MS.gene59474:CDS
ATCAAAGAAGGGAAAGCTGA+TGG 0.532152 5.4:+13784510 MS.gene59474:CDS
TTCTTGCAACAATTCTTCAA+GGG 0.532402 5.4:-13785885 None:intergenic
GGTAATGGTAATGGTAATGA+TGG 0.532931 5.4:+13785101 MS.gene59474:CDS
ATAAAGCTCCAACCTACTCT+TGG 0.534128 5.4:-13785909 None:intergenic
ATGGTAATGGTAATGATGGT+GGG 0.540034 5.4:+13785105 MS.gene59474:CDS
GGGAAGCTTATAATTGAAGA+AGG 0.540686 5.4:+13784462 MS.gene59474:CDS
AATGGTAATGGTAATGATGG+TGG 0.541312 5.4:+13785104 MS.gene59474:CDS
AACGAAGATGGTGTTGGTGT+TGG 0.542799 5.4:+13784903 MS.gene59474:CDS
TCTAATCTTAATCCCAAGAA+GGG 0.543141 5.4:+13784873 MS.gene59474:CDS
GAAGATGGTGTTGGTGTTGG+TGG 0.544951 5.4:+13784906 MS.gene59474:CDS
CGAGGAACTTGCTCTGGCTG+AGG 0.545445 5.4:+13785808 MS.gene59474:CDS
ATGTTGCATGAAAGATTGCT+TGG 0.546277 5.4:-13785855 None:intergenic
TCCAAGGCAATCATAAGTGC+AGG 0.551486 5.4:+13785683 MS.gene59474:CDS
TGAGACTAAGGCAAGTATGA+AGG 0.552197 5.4:+13785208 MS.gene59474:CDS
TCGAAGCATTACGGAATCAA+GGG 0.553633 5.4:+13785283 MS.gene59474:CDS
GGCAATCATAAGTGCAGGTG+GGG 0.555744 5.4:+13785688 MS.gene59474:CDS
ATAATTGAAGAAGGTGGGGT+TGG 0.561265 5.4:+13784471 MS.gene59474:CDS
GCTTATAATTGAAGAAGGTG+GGG 0.562246 5.4:+13784467 MS.gene59474:CDS
GCAAGAAGCCAAGAGTAGGT+TGG 0.565047 5.4:+13785901 MS.gene59474:CDS
AAGAGAGGCAGAGGTTTCAA+GGG 0.568662 5.4:+13785601 MS.gene59474:CDS
TTGGAGCTTTATCAGTCTAG+AGG 0.571086 5.4:+13785920 MS.gene59474:CDS
AAGGGAAATGAAAACGAAGA+TGG 0.574888 5.4:+13784891 MS.gene59474:CDS
CTGAGAAAGATGCTGAATTG+AGG 0.579995 5.4:+13785396 MS.gene59474:CDS
TTCCCAATCGCCTTGACACA+AGG 0.582115 5.4:-13785512 None:intergenic
CGCCACCGCGATCATCTGCA+GGG 0.587014 5.4:-13784290 None:intergenic
CGGGGATTAACATGAAGGGA+AGG 0.588777 5.4:+13785171 MS.gene59474:CDS
TATCAGTCTAGAGGTTCAAG+AGG 0.589279 5.4:+13785929 MS.gene59474:CDS
AGGCGATTGGGAATTTGGCA+AGG 0.589920 5.4:+13785522 MS.gene59474:CDS
AAGGCAATCATAAGTGCAGG+TGG 0.593242 5.4:+13785686 MS.gene59474:CDS
AAAACTTCTTGATGAAAGAG+AGG 0.593947 5.4:+13785586 MS.gene59474:CDS
CCATCATAAATTGCATCAGT+AGG 0.594100 5.4:+13785955 MS.gene59474:CDS
TGGTCTGCTTGGGCGTGACG+CGG 0.597225 5.4:+13784557 MS.gene59474:CDS
GGTTCATTGGCTGCTATAGG+AGG 0.604842 5.4:-13784327 None:intergenic
TGGACCGATCATCCTTGTCT+CGG 0.604912 5.4:-13785558 None:intergenic
CATTCGGGGATTAACATGAA+GGG 0.608292 5.4:+13785167 MS.gene59474:CDS
GAAGGCTGCAGCTGGTATGA+TGG 0.608444 5.4:-13784202 None:intergenic
CCTTGGAGTGATCAACATGA+AGG 0.610502 5.4:-13785667 None:intergenic
AGAGAAATTATTCGCATTCG+GGG 0.615406 5.4:+13785153 MS.gene59474:CDS
TGTTGCAAGAAGCCAAGAGT+AGG 0.617388 5.4:+13785897 MS.gene59474:CDS
GGGGATTAACATGAAGGGAA+GGG 0.621193 5.4:+13785172 MS.gene59474:CDS
AGAGGCAGAGGTTTCAAGGG+AGG 0.623603 5.4:+13785604 MS.gene59474:CDS
GCATTTGGCTAAAGGTAATG+TGG 0.623690 5.4:+13785253 MS.gene59474:CDS
AGGCAATCATAAGTGCAGGT+GGG 0.626281 5.4:+13785687 MS.gene59474:CDS
CTTTCAAGGCTACCGAGACA+AGG 0.628110 5.4:+13785546 MS.gene59474:CDS
ATTGCATGTGCCAGATAGCG+AGG 0.639123 5.4:+13785790 MS.gene59474:CDS
GCTACCGAGACAAGGATGAT+CGG 0.639489 5.4:+13785554 MS.gene59474:CDS
AATGAAAACGAAGATGGTGT+TGG 0.642607 5.4:+13784897 MS.gene59474:CDS
TCTCCTCATACCTTGTGTCA+AGG 0.643488 5.4:+13785502 MS.gene59474:CDS
CCTTCATGTTGATCACTCCA+AGG 0.647450 5.4:+13785667 MS.gene59474:CDS
TCACTTGTGTCATTGGCACG+AGG 0.652546 5.4:+13784426 MS.gene59474:CDS
GTTGAACATATGATACATGT+TGG 0.665595 5.4:+13784585 MS.gene59474:CDS
TCTGCCCCTGCAGATGATCG+CGG 0.669789 5.4:+13784285 MS.gene59474:CDS
GGTGTTGGTGGCAATAAGCA+CGG 0.670172 5.4:+13784918 MS.gene59474:CDS
GCCACCGCGATCATCTGCAG+GGG 0.683333 5.4:-13784289 None:intergenic
TGTGCAATACAATTCCGCGA+TGG 0.692726 5.4:+13785349 MS.gene59474:CDS
TTTACTTGAGAAAGGACCGG+AGG 0.694179 5.4:+13785325 MS.gene59474:CDS
AATCTCCATCAACGCCATCG+CGG 0.698736 5.4:-13785363 None:intergenic
GCCCCTGCAGATGATCGCGG+TGG 0.706857 5.4:+13784288 MS.gene59474:CDS
ATTACTAGCCATAACAACAG+CGG 0.731490 5.4:-13784829 None:intergenic
GGCGTTGATGGAGATTACTG+CGG 0.755132 5.4:+13785370 MS.gene59474:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTATATTATGTTTTATA+TGG + chr5.4:13784346-13784365 MS.gene59474:CDS 15.0%
!!! ACCTATATTATGTTTTATAT+GGG + chr5.4:13784347-13784366 MS.gene59474:CDS 15.0%
!! AAAACATAATATAGGTTCAT+TGG - chr5.4:13784343-13784362 None:intergenic 20.0%
!! TCCCATATAAAACATAATAT+AGG - chr5.4:13784351-13784370 None:intergenic 20.0%
! TTGCTCAGCATAATATTATT+AGG + chr5.4:13784721-13784740 MS.gene59474:CDS 25.0%
!! AATATTATTAGGTTGCTTGT+TGG + chr5.4:13784732-13784751 MS.gene59474:CDS 25.0%
AAAACTTCTTGATGAAAGAG+AGG + chr5.4:13785586-13785605 MS.gene59474:CDS 30.0%
AAGCTTATAATTGAAGAAGG+TGG + chr5.4:13784465-13784484 MS.gene59474:CDS 30.0%
AGCTTATAATTGAAGAAGGT+GGG + chr5.4:13784466-13784485 MS.gene59474:CDS 30.0%
ATCACTCTATGCAAATTTCT+TGG - chr5.4:13784975-13784994 None:intergenic 30.0%
CAATTATAAGCTTCCCATAT+CGG - chr5.4:13784458-13784477 None:intergenic 30.0%
GATAATTGAGAAAGCAGATT+CGG + chr5.4:13785478-13785497 MS.gene59474:CDS 30.0%
GTTGAACATATGATACATGT+TGG + chr5.4:13784585-13784604 MS.gene59474:CDS 30.0%
TCAGAGAAATTATTCGCATT+CGG + chr5.4:13785151-13785170 MS.gene59474:CDS 30.0%
TCTAATCTTAATCCCAAGAA+GGG + chr5.4:13784873-13784892 MS.gene59474:CDS 30.0%
TGCTAATTATCCTAAATGTC+AGG + chr5.4:13784692-13784711 MS.gene59474:CDS 30.0%
TTACCATTACCATTACCATT+AGG - chr5.4:13785092-13785111 None:intergenic 30.0%
TTCGCGAAAATTCTTAAAGA+AGG + chr5.4:13784621-13784640 MS.gene59474:CDS 30.0%
TTCTAATCTTAATCCCAAGA+AGG + chr5.4:13784872-13784891 MS.gene59474:CDS 30.0%
TTCTTGCAACAATTCTTCAA+GGG - chr5.4:13785888-13785907 None:intergenic 30.0%
! AATAGCGAGTTTTTCTGTTT+TGG - chr5.4:13784037-13784056 None:intergenic 30.0%
! ACCAATAGAGTTTTCTAGAT+GGG - chr5.4:13784241-13784260 None:intergenic 30.0%
! TCATCAAGAAGTTTTACCAA+TGG - chr5.4:13785581-13785600 None:intergenic 30.0%
! TTGATTCAGCTTGTGTATTT+TGG + chr5.4:13785719-13785738 MS.gene59474:CDS 30.0%
!! AATGGTAATGGTAATGGTAA+TGG + chr5.4:13785092-13785111 MS.gene59474:CDS 30.0%
!! TGTGTATTTTGGAGAACAAA+TGG + chr5.4:13785730-13785749 MS.gene59474:CDS 30.0%
!!! TTTAGCTTTTGAAACTGTTG+AGG + chr5.4:13784758-13784777 MS.gene59474:CDS 30.0%
!!! TTTGCTGTTTTACTTGAGAA+AGG + chr5.4:13785317-13785336 MS.gene59474:CDS 30.0%
!!! TTTTGAAGCTGATCAAAGAA+GGG + chr5.4:13784499-13784518 MS.gene59474:CDS 30.0%
AAAAACTCGCTATTCTTCTC+CGG + chr5.4:13784043-13784062 MS.gene59474:CDS 35.0%
AAGGGAAATGAAAACGAAGA+TGG + chr5.4:13784891-13784910 MS.gene59474:CDS 35.0%
AATGAAAACGAAGATGGTGT+TGG + chr5.4:13784897-13784916 MS.gene59474:CDS 35.0%
ACAACACCTTGAACTTTCAT+AGG - chr5.4:13784648-13784667 None:intergenic 35.0%
AGAGAAATTATTCGCATTCG+GGG + chr5.4:13785153-13785172 MS.gene59474:CDS 35.0%
ATGTTGCATGAAAGATTGCT+TGG - chr5.4:13785858-13785877 None:intergenic 35.0%
ATTACTAGCCATAACAACAG+CGG - chr5.4:13784832-13784851 None:intergenic 35.0%
CAGAGAAATTATTCGCATTC+GGG + chr5.4:13785152-13785171 MS.gene59474:CDS 35.0%
CAGATCGCTATGTTATATAC+TGG + chr5.4:13784372-13784391 MS.gene59474:CDS 35.0%
CTTCTTGCAACAATTCTTCA+AGG - chr5.4:13785889-13785908 None:intergenic 35.0%
CTTGCTTCATTTCCTTCATT+AGG - chr5.4:13785035-13785054 None:intergenic 35.0%
GCTTATAATTGAAGAAGGTG+GGG + chr5.4:13784467-13784486 MS.gene59474:CDS 35.0%
GGGAAGCTTATAATTGAAGA+AGG + chr5.4:13784462-13784481 MS.gene59474:CDS 35.0%
TAAGGCAAGTATGAAGGAAA+TGG + chr5.4:13785214-13785233 MS.gene59474:CDS 35.0%
TAGAGTGATCACAAGTACTA+TGG + chr5.4:13784986-13785005 MS.gene59474:CDS 35.0%
TCCCATCTAGAAAACTCTAT+TGG + chr5.4:13784237-13784256 MS.gene59474:CDS 35.0%
TCTTTGATCAGCTTCAAAAG+TGG - chr5.4:13784498-13784517 None:intergenic 35.0%
! CACCAATAGAGTTTTCTAGA+TGG - chr5.4:13784242-13784261 None:intergenic 35.0%
! CTAGATGGGAAGATGTTTTA+CGG - chr5.4:13784227-13784246 None:intergenic 35.0%
! TCGTTTTCATTTCCCTTCTT+GGG - chr5.4:13784888-13784907 None:intergenic 35.0%
! TGTTTTACTTGAGAAAGGAC+CGG + chr5.4:13785322-13785341 MS.gene59474:CDS 35.0%
! TTCGTTTTCATTTCCCTTCT+TGG - chr5.4:13784889-13784908 None:intergenic 35.0%
!! AATGGTAATGGTAATGATGG+TGG + chr5.4:13785104-13785123 MS.gene59474:CDS 35.0%
!! ACTCTATTGGTGATGTTTCA+TGG + chr5.4:13784250-13784269 MS.gene59474:CDS 35.0%
!! ATGGTAATGGTAATGATGGT+GGG + chr5.4:13785105-13785124 MS.gene59474:CDS 35.0%
!! GGTAATGGTAATGGTAATGA+TGG + chr5.4:13785101-13785120 MS.gene59474:CDS 35.0%
!!! CTTTTGAAGCTGATCAAAGA+AGG + chr5.4:13784498-13784517 MS.gene59474:CDS 35.0%
AATGGTTCAGATTCCAGCAT+TGG + chr5.4:13785748-13785767 MS.gene59474:CDS 40.0%
ACCAATTCCAATGCTCCTAA+TGG + chr5.4:13785074-13785093 MS.gene59474:CDS 40.0%
ATAAAGCTCCAACCTACTCT+TGG - chr5.4:13785912-13785931 None:intergenic 40.0%
ATAATTGAAGAAGGTGGGGT+TGG + chr5.4:13784471-13784490 MS.gene59474:CDS 40.0%
ATCAAAGAAGGGAAAGCTGA+TGG + chr5.4:13784510-13784529 MS.gene59474:CDS 40.0%
ATCTGAAGATGCTGAGACTA+AGG + chr5.4:13785196-13785215 MS.gene59474:CDS 40.0%
ATTTCCTTCATTAGGCTGCT+TGG - chr5.4:13785027-13785046 None:intergenic 40.0%
CATTCGGGGATTAACATGAA+GGG + chr5.4:13785167-13785186 MS.gene59474:CDS 40.0%
CGTGTATCACATCATCCATT+GGG + chr5.4:13784942-13784961 MS.gene59474:CDS 40.0%
CTGAGAAAGATGCTGAATTG+AGG + chr5.4:13785396-13785415 MS.gene59474:CDS 40.0%
GAAGGTCCTATGAAAGTTCA+AGG + chr5.4:13784639-13784658 MS.gene59474:CDS 40.0%
GAATTTGGCAAGGACTTTCA+AGG + chr5.4:13785532-13785551 MS.gene59474:CDS 40.0%
GCAAAGAGTTCCTGACATTT+AGG - chr5.4:13784705-13784724 None:intergenic 40.0%
GCATTTGGCTAAAGGTAATG+TGG + chr5.4:13785253-13785272 MS.gene59474:CDS 40.0%
GTCCTAAAATGTCGTGCTAA+TGG + chr5.4:13784159-13784178 MS.gene59474:CDS 40.0%
TATCAGTCTAGAGGTTCAAG+AGG + chr5.4:13785929-13785948 MS.gene59474:CDS 40.0%
TCCAATGCTCCTAATGGTAA+TGG + chr5.4:13785080-13785099 MS.gene59474:CDS 40.0%
TCGTGTATCACATCATCCAT+TGG + chr5.4:13784941-13784960 MS.gene59474:CDS 40.0%
TCTACGAACGTCCAACAAAA+CGG + chr5.4:13784091-13784110 MS.gene59474:CDS 40.0%
TGAGACTAAGGCAAGTATGA+AGG + chr5.4:13785208-13785227 MS.gene59474:CDS 40.0%
TGGTTCACAAGAAGTTCGTT+CGG + chr5.4:13784392-13784411 MS.gene59474:CDS 40.0%
TTGATCAACAACTGCTTTGC+AGG - chr5.4:13785450-13785469 None:intergenic 40.0%
! ACCATTACCATTAGGAGCAT+TGG - chr5.4:13785084-13785103 None:intergenic 40.0%
! ATAGGTTCATTGGCTGCTAT+AGG - chr5.4:13784333-13784352 None:intergenic 40.0%
! ATGAAGGTAGTTTTCACTGC+CGG - chr5.4:13785654-13785673 None:intergenic 40.0%
! ATGGGAAGATGTTTTACGGA+AGG - chr5.4:13784223-13784242 None:intergenic 40.0%
! GACCATTAGCACGACATTTT+AGG - chr5.4:13784164-13784183 None:intergenic 40.0%
! GGCAATTTGTCGAAGCATTA+CGG + chr5.4:13785274-13785293 MS.gene59474:CDS 40.0%
! TCGAAGCATTACGGAATCAA+GGG + chr5.4:13785283-13785302 MS.gene59474:CDS 40.0%
! TCTTCGATGATCCGTTTTGT+TGG - chr5.4:13784105-13784124 None:intergenic 40.0%
! TTGGAGCTTTATCAGTCTAG+AGG + chr5.4:13785920-13785939 MS.gene59474:CDS 40.0%
! TTTCTTGGTCTTTCACCCAA+TGG - chr5.4:13784960-13784979 None:intergenic 40.0%
!! AAGTTCAAGGTGTTGTTGCT+TGG + chr5.4:13784652-13784671 MS.gene59474:CDS 40.0%
!! ACCATTAGGAGCATTGGAAT+TGG - chr5.4:13785078-13785097 None:intergenic 40.0%
!! AGTTCAAGGTGTTGTTGCTT+GGG + chr5.4:13784653-13784672 MS.gene59474:CDS 40.0%
!! GCTCCTAATGGTAATGGTAA+TGG + chr5.4:13785086-13785105 MS.gene59474:CDS 40.0%
!!! CATCTGCTGCTTTTGTTACA+TGG - chr5.4:13783975-13783994 None:intergenic 40.0%
AAAGAGAGGCAGAGGTTTCA+AGG + chr5.4:13785600-13785619 MS.gene59474:CDS 45.0%
AAATGGCAGCAAGAGCTCTA+TGG + chr5.4:13785231-13785250 MS.gene59474:CDS 45.0%
AAGAGAGGCAGAGGTTTCAA+GGG + chr5.4:13785601-13785620 MS.gene59474:CDS 45.0%
AAGGCAATCATAAGTGCAGG+TGG + chr5.4:13785686-13785705 MS.gene59474:CDS 45.0%
ACCTGCACTTATGATTGCCT+TGG - chr5.4:13785687-13785706 None:intergenic 45.0%
AGCAAGAGCTCTATGGCATT+TGG + chr5.4:13785238-13785257 MS.gene59474:CDS 45.0%
AGCTGCTTCACTTGTGTCAT+TGG + chr5.4:13784419-13784438 MS.gene59474:CDS 45.0%
AGGCAATCATAAGTGCAGGT+GGG + chr5.4:13785687-13785706 MS.gene59474:CDS 45.0%
ATACCTTGTGTCAAGGCGAT+TGG + chr5.4:13785509-13785528 MS.gene59474:CDS 45.0%
ATCGCGCTTAGGAAATTTGC+CGG + chr5.4:13785632-13785651 MS.gene59474:CDS 45.0%
CCTTCATGTTGATCACTCCA+AGG + chr5.4:13785667-13785686 MS.gene59474:CDS 45.0%
CCTTGGAGTGATCAACATGA+AGG - chr5.4:13785670-13785689 None:intergenic 45.0%
GAATTGTATTGCACAGCCTC+CGG - chr5.4:13785344-13785363 None:intergenic 45.0%
GAGAATGCTGCTAGAGCTAT+TGG + chr5.4:13784537-13784556 MS.gene59474:CDS 45.0%
GCATTCGGGGATTAACATGA+AGG + chr5.4:13785166-13785185 MS.gene59474:CDS 45.0%
GCTCTATGGCATTTGGCTAA+AGG + chr5.4:13785245-13785264 MS.gene59474:CDS 45.0%
GGGGATTAACATGAAGGGAA+GGG + chr5.4:13785172-13785191 MS.gene59474:CDS 45.0%
TAAGAGAGCAGAACCAATGC+TGG - chr5.4:13785764-13785783 None:intergenic 45.0%
TACCTTGTGTCAAGGCGATT+GGG + chr5.4:13785510-13785529 MS.gene59474:CDS 45.0%
TCCAAGGCAATCATAAGTGC+AGG + chr5.4:13785683-13785702 MS.gene59474:CDS 45.0%
TCTCCTCATACCTTGTGTCA+AGG + chr5.4:13785502-13785521 MS.gene59474:CDS 45.0%
TCTTGATGAAAGAGAGGCAG+AGG + chr5.4:13785592-13785611 MS.gene59474:CDS 45.0%
TGTCAAGGCGATTGGGAATT+TGG + chr5.4:13785517-13785536 MS.gene59474:CDS 45.0%
TGTGCAATACAATTCCGCGA+TGG + chr5.4:13785349-13785368 MS.gene59474:CDS 45.0%
TGTTGCAAGAAGCCAAGAGT+AGG + chr5.4:13785897-13785916 MS.gene59474:CDS 45.0%
TGTTGGACGTTCGTAGAGAT+CGG - chr5.4:13784088-13784107 None:intergenic 45.0%
TTGTTACATGGTCTGCTAGC+TGG - chr5.4:13783963-13783982 None:intergenic 45.0%
TTTACTTGAGAAAGGACCGG+AGG + chr5.4:13785325-13785344 MS.gene59474:CDS 45.0%
! CTAGAGCTATTGGTCTGCTT+GGG + chr5.4:13784547-13784566 MS.gene59474:CDS 45.0%
! GTCGAAGCATTACGGAATCA+AGG + chr5.4:13785282-13785301 MS.gene59474:CDS 45.0%
!! AACGAAGATGGTGTTGGTGT+TGG + chr5.4:13784903-13784922 MS.gene59474:CDS 45.0%
AATCTCCATCAACGCCATCG+CGG - chr5.4:13785366-13785385 None:intergenic 50.0%
ACATGGTCTGCTAGCTGGAT+CGG - chr5.4:13783958-13783977 None:intergenic 50.0%
AGAGCAAGTTCCTCGCTATC+TGG - chr5.4:13785803-13785822 None:intergenic 50.0%
AGGCGATTGGGAATTTGGCA+AGG + chr5.4:13785522-13785541 MS.gene59474:CDS 50.0%
ATTGCATGTGCCAGATAGCG+AGG + chr5.4:13785790-13785809 MS.gene59474:CDS 50.0%
CACGAGGTAGTGACCGATAT+GGG + chr5.4:13784442-13784461 MS.gene59474:CDS 50.0%
CGGGGATTAACATGAAGGGA+AGG + chr5.4:13785171-13785190 MS.gene59474:CDS 50.0%
CTTTCAAGGCTACCGAGACA+AGG + chr5.4:13785546-13785565 MS.gene59474:CDS 50.0%
GACAAGGATGATCGGTCCAT+TGG + chr5.4:13785562-13785581 MS.gene59474:CDS 50.0%
GATTCACGCCGCTGTTGTTA+TGG + chr5.4:13784821-13784840 MS.gene59474:CDS 50.0%
GCAAGAAGCCAAGAGTAGGT+TGG + chr5.4:13785901-13785920 MS.gene59474:CDS 50.0%
GCTACCGAGACAAGGATGAT+CGG + chr5.4:13785554-13785573 MS.gene59474:CDS 50.0%
GCTTCCAAGCAGCCTAATGA+AGG + chr5.4:13785020-13785039 MS.gene59474:CDS 50.0%
GCTTTGCAGGCAGGAGAATT+AGG - chr5.4:13785437-13785456 None:intergenic 50.0%
GGCAATCATAAGTGCAGGTG+GGG + chr5.4:13785688-13785707 MS.gene59474:CDS 50.0%
TCAACAACTGCTTTGCAGGC+AGG - chr5.4:13785446-13785465 None:intergenic 50.0%
TCGCCTTGACACAAGGTATG+AGG - chr5.4:13785508-13785527 None:intergenic 50.0%
TGGACCGATCATCCTTGTCT+CGG - chr5.4:13785561-13785580 None:intergenic 50.0%
TTCCCAATCGCCTTGACACA+AGG - chr5.4:13785515-13785534 None:intergenic 50.0%
! AGATAGCGAGGAACTTGCTC+TGG + chr5.4:13785802-13785821 MS.gene59474:CDS 50.0%
! AGGTGCTTGGAGTGCTTGAA+TGG + chr5.4:13785828-13785847 MS.gene59474:CDS 50.0%
! GCTAGAGCTATTGGTCTGCT+TGG + chr5.4:13784546-13784565 MS.gene59474:CDS 50.0%
! GGTGCTTGGAGTGCTTGAAT+GGG + chr5.4:13785829-13785848 MS.gene59474:CDS 50.0%
! GGTTCATTGGCTGCTATAGG+AGG - chr5.4:13784330-13784349 None:intergenic 50.0%
! TCACTTGTGTCATTGGCACG+AGG + chr5.4:13784426-13784445 MS.gene59474:CDS 50.0%
!! GAAGATGGTGTTGGTGTTGG+TGG + chr5.4:13784906-13784925 MS.gene59474:CDS 50.0%
!! GGCGTTGATGGAGATTACTG+CGG + chr5.4:13785370-13785389 MS.gene59474:CDS 50.0%
!! GGTAATGATGGTGGGAAGCA+AGG + chr5.4:13785113-13785132 MS.gene59474:CDS 50.0%
!! GGTGTTGGTGGCAATAAGCA+CGG + chr5.4:13784918-13784937 MS.gene59474:CDS 50.0%
AGAGGCAGAGGTTTCAAGGG+AGG + chr5.4:13785604-13785623 MS.gene59474:CDS 55.0%
GAAGGCTGCAGCTGGTATGA+TGG - chr5.4:13784205-13784224 None:intergenic 55.0%
GCACGAGGTAGTGACCGATA+TGG + chr5.4:13784441-13784460 MS.gene59474:CDS 55.0%
! CAATTCCGCGATGGCGTTGA+TGG + chr5.4:13785358-13785377 MS.gene59474:CDS 55.0%
! GTTTTACGGAAGGCTGCAGC+TGG - chr5.4:13784213-13784232 None:intergenic 55.0%
GATCGCGGTGGCGAGTATCT+AGG + chr5.4:13784300-13784319 MS.gene59474:CDS 60.0%
TCTGCCCCTGCAGATGATCG+CGG + chr5.4:13784285-13784304 MS.gene59474:CDS 60.0%
! AGCTCGCTCTTGCTGCTTGC+CGG - chr5.4:13784065-13784084 None:intergenic 60.0%
! CGAGGAACTTGCTCTGGCTG+AGG + chr5.4:13785808-13785827 MS.gene59474:CDS 60.0%
! CTTGCTCTGGCTGAGGTGCT+TGG + chr5.4:13785815-13785834 MS.gene59474:CDS 60.0%
CGCCACCGCGATCATCTGCA+GGG - chr5.4:13784293-13784312 None:intergenic 65.0%
GCCACCGCGATCATCTGCAG+GGG - chr5.4:13784292-13784311 None:intergenic 65.0%
TCGCCACCGCGATCATCTGC+AGG - chr5.4:13784294-13784313 None:intergenic 65.0%
TGGTCTGCTTGGGCGTGACG+CGG + chr5.4:13784557-13784576 MS.gene59474:CDS 65.0%
!! GGGAGGCGTCAATCGCGCTT+AGG + chr5.4:13785621-13785640 MS.gene59474:CDS 65.0%
GCCCCTGCAGATGATCGCGG+TGG + chr5.4:13784288-13784307 MS.gene59474:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 13783922 13785976 13783922 ID=MS.gene59474
chr5.4 mRNA 13783922 13785976 13783922 ID=MS.gene59474.t1;Parent=MS.gene59474
chr5.4 exon 13783922 13785976 13783922 ID=MS.gene59474.t1.exon1;Parent=MS.gene59474.t1
chr5.4 CDS 13783922 13785976 13783922 ID=cds.MS.gene59474.t1;Parent=MS.gene59474.t1
Gene Sequence

>MS.gene59474

ATGGGTGACATAGTGAAACAAATATTAGCAAAACCGATCCAGCTAGCAGACCATGTAACAAAAGCAGCAGATGAAGCAAGTTCATTCAAACAAGAATGTTCTGAGCTCAAATCCAAAACAGAAAAACTCGCTATTCTTCTCCGGCAAGCAGCAAGAGCGAGCTCCGATCTCTACGAACGTCCAACAAAACGGATCATCGAAGAAACAGAACAAGTACTCGATAAAGCACTTTCATTAGTCCTAAAATGTCGTGCTAATGGTCTCATGAAACGTGTCTTCACCATCATACCAGCTGCAGCCTTCCGTAAAACATCTTCCCATCTAGAAAACTCTATTGGTGATGTTTCATGGCTTCTTCGAGTATCTGCCCCTGCAGATGATCGCGGTGGCGAGTATCTAGGACTGCCTCCTATAGCAGCCAATGAACCTATATTATGTTTTATATGGGAGCAGATCGCTATGTTATATACTGGTTCACAAGAAGTTCGTTCGGATGCAGCTGCTTCACTTGTGTCATTGGCACGAGGTAGTGACCGATATGGGAAGCTTATAATTGAAGAAGGTGGGGTTGGTCCACTTTTGAAGCTGATCAAAGAAGGGAAAGCTGATGGACAAGAGAATGCTGCTAGAGCTATTGGTCTGCTTGGGCGTGACGCGGAGAGTGTTGAACATATGATACATGTTGGTGTTTGTTCTGCTTTCGCGAAAATTCTTAAAGAAGGTCCTATGAAAGTTCAAGGTGTTGTTGCTTGGGCTGTTTCTGAACTTGCTGCTAATTATCCTAAATGTCAGGAACTCTTTGCTCAGCATAATATTATTAGGTTGCTTGTTGGTCATTTAGCTTTTGAAACTGTTGAGGAACATAGTAAGTATGCTATTGTTAGTATGAAAGCGAATTCGATTCACGCCGCTGTTGTTATGGCTAGTAATAATAATAATAATAATTCTAGTTCTAATCTTAATCCCAAGAAGGGAAATGAAAACGAAGATGGTGTTGGTGTTGGTGGCAATAAGCACGGTCGTGTATCACATCATCCATTGGGTGAAAGACCAAGAAATTTGCATAGAGTGATCACAAGTACTATGGCAATTCATGCTGCTTCCAAGCAGCCTAATGAAGGAAATGAAGCAAGTCAAAATCAGAACTTTTTGACCAATTCCAATGCTCCTAATGGTAATGGTAATGGTAATGGTAATGATGGTGGGAAGCAAGGAAATCATAATAATCATCAGAGAAATTATTCGCATTCGGGGATTAACATGAAGGGAAGGGAATCTGAAGATGCTGAGACTAAGGCAAGTATGAAGGAAATGGCAGCAAGAGCTCTATGGCATTTGGCTAAAGGTAATGTGGCAATTTGTCGAAGCATTACGGAATCAAGGGCTTTGTTGTGTTTTGCTGTTTTACTTGAGAAAGGACCGGAGGCTGTGCAATACAATTCCGCGATGGCGTTGATGGAGATTACTGCGGTTGCTGAGAAAGATGCTGAATTGAGGAAATCTGCATTCAAGCCTAATTCTCCTGCCTGCAAAGCAGTTGTTGATCAAGTGCTTAAGATAATTGAGAAAGCAGATTCGGATCTCCTCATACCTTGTGTCAAGGCGATTGGGAATTTGGCAAGGACTTTCAAGGCTACCGAGACAAGGATGATCGGTCCATTGGTAAAACTTCTTGATGAAAGAGAGGCAGAGGTTTCAAGGGAGGCGTCAATCGCGCTTAGGAAATTTGCCGGCAGTGAAAACTACCTTCATGTTGATCACTCCAAGGCAATCATAAGTGCAGGTGGGGCAAAGCACTTGATTCAGCTTGTGTATTTTGGAGAACAAATGGTTCAGATTCCAGCATTGGTTCTGCTCTCTTACATTGCATTGCATGTGCCAGATAGCGAGGAACTTGCTCTGGCTGAGGTGCTTGGAGTGCTTGAATGGGCATCCAAGCAATCTTTCATGCAACATGATGAAACCCTTGAAGAATTGTTGCAAGAAGCCAAGAGTAGGTTGGAGCTTTATCAGTCTAGAGGTTCAAGAGGATTCCATCATAAATTGCATCAGTAG

Protein sequence

>MS.gene59474.t1

MGDIVKQILAKPIQLADHVTKAADEASSFKQECSELKSKTEKLAILLRQAARASSDLYERPTKRIIEETEQVLDKALSLVLKCRANGLMKRVFTIIPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGGEYLGLPPIAANEPILCFIWEQIAMLYTGSQEVRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKADGQENAARAIGLLGRDAESVEHMIHVGVCSAFAKILKEGPMKVQGVVAWAVSELAANYPKCQELFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKANSIHAAVVMASNNNNNNSSSNLNPKKGNENEDGVGVGGNKHGRVSHHPLGERPRNLHRVITSTMAIHAASKQPNEGNEASQNQNFLTNSNAPNGNGNGNGNDGGKQGNHNNHQRNYSHSGINMKGRESEDAETKASMKEMAARALWHLAKGNVAICRSITESRALLCFAVLLEKGPEAVQYNSAMALMEITAVAEKDAELRKSAFKPNSPACKAVVDQVLKIIEKADSDLLIPCVKAIGNLARTFKATETRMIGPLVKLLDEREAEVSREASIALRKFAGSENYLHVDHSKAIISAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELALAEVLGVLEWASKQSFMQHDETLEELLQEAKSRLELYQSRGSRGFHHKLHQ