Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59809.t1 | XP_003628140.2 | 97.6 | 295 | 7 | 0 | 1 | 295 | 1 | 295 | 2.10E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59809.t1 | Q9ZNT1 | 65.0 | 277 | 95 | 2 | 21 | 295 | 5 | 281 | 1.9e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59809.t1 | B7FJK4 | 97.6 | 295 | 7 | 0 | 1 | 295 | 1 | 295 | 1.5e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049239 | MS.gene59809 | 0.835777 | 1.38E-56 | -1.69E-46 |
| MS.gene051539 | MS.gene59809 | 0.810195 | 1.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59809.t1 | MTR_8g044160 | 97.627 | 295 | 7 | 0 | 1 | 295 | 1 | 295 | 0.0 | 599 |
| MS.gene59809.t1 | MTR_3g079510 | 66.906 | 278 | 91 | 1 | 19 | 295 | 1 | 278 | 6.23e-141 | 398 |
| MS.gene59809.t1 | MTR_3g479590 | 66.906 | 278 | 91 | 1 | 19 | 295 | 1 | 278 | 6.23e-141 | 398 |
| MS.gene59809.t1 | MTR_7g087090 | 66.135 | 251 | 85 | 0 | 45 | 295 | 28 | 278 | 1.06e-129 | 370 |
| MS.gene59809.t1 | MTR_4g114030 | 40.000 | 295 | 141 | 7 | 35 | 295 | 33 | 325 | 1.08e-64 | 206 |
| MS.gene59809.t1 | MTR_5g059820 | 39.130 | 253 | 133 | 5 | 55 | 287 | 624 | 875 | 9.16e-51 | 179 |
| MS.gene59809.t1 | MTR_3g073180 | 38.462 | 260 | 135 | 8 | 55 | 291 | 642 | 899 | 5.41e-48 | 171 |
| MS.gene59809.t1 | MTR_3g073150 | 36.293 | 259 | 141 | 6 | 50 | 287 | 612 | 867 | 2.19e-46 | 167 |
| MS.gene59809.t1 | MTR_4g113900 | 37.234 | 94 | 51 | 2 | 112 | 203 | 91 | 178 | 5.23e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59809.t1 | AT5G17770 | 66.932 | 251 | 83 | 0 | 45 | 295 | 31 | 281 | 2.86e-131 | 374 |
| MS.gene59809.t1 | AT5G20080 | 39.873 | 316 | 158 | 6 | 10 | 295 | 15 | 328 | 8.46e-68 | 214 |
| MS.gene59809.t1 | AT1G37130 | 37.838 | 259 | 139 | 6 | 56 | 293 | 657 | 914 | 6.17e-48 | 171 |
| MS.gene59809.t1 | AT1G77760 | 35.178 | 253 | 142 | 6 | 56 | 287 | 657 | 908 | 4.19e-45 | 163 |
Find 75 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTCATTTGTCTAAAA+TGG | 0.154232 | 8.3:-54808430 | None:intergenic |
| TGTCTTTCACGTTCTTAATA+AGG | 0.198260 | 8.3:+54809405 | MS.gene59809:CDS |
| GGCAATTAAACCTGGATATC+AGG | 0.207511 | 8.3:-54809755 | None:intergenic |
| ATTGCACCATTTAGAATTTC+AGG | 0.220278 | 8.3:-54807026 | None:intergenic |
| ATCACATTGGATTCAGATAT+TGG | 0.246714 | 8.3:+54808227 | MS.gene59809:CDS |
| ACACCACCATTCCATTTATT+AGG | 0.270818 | 8.3:-54809683 | None:intergenic |
| GTTACAAACCTGGTCAAGTT+AGG | 0.279037 | 8.3:+54808643 | MS.gene59809:CDS |
| TTTGACAGCCTCCTAATAAA+TGG | 0.283114 | 8.3:+54809672 | MS.gene59809:intron |
| AGGCATTACCCCAATGTTTC+AGG | 0.287455 | 8.3:+54808692 | MS.gene59809:CDS |
| CCTGGTCAAGTTAGGGCATT+TGG | 0.298742 | 8.3:+54808651 | MS.gene59809:CDS |
| CTGTCACATTGGCGTAAATA+AGG | 0.315077 | 8.3:-54809046 | None:intergenic |
| GGAAGTCCCACTATCGAATT+AGG | 0.318021 | 8.3:-54807720 | None:intergenic |
| GGAATGATTGCTGGAGGTTC+AGG | 0.322357 | 8.3:+54808672 | MS.gene59809:CDS |
| AATTTGAATCTTGCAGCATT+GGG | 0.356810 | 8.3:-54807684 | None:intergenic |
| TTGGAGCCTGAAATTCTAAA+TGG | 0.359265 | 8.3:+54807020 | MS.gene59809:CDS |
| AGTTGCTATGGCTTTATTCA+TGG | 0.365210 | 8.3:-54809909 | None:intergenic |
| TTCATTTGTACCTGAAACAT+TGG | 0.379448 | 8.3:-54808702 | None:intergenic |
| TCATTTGTACCTGAAACATT+GGG | 0.390761 | 8.3:-54808701 | None:intergenic |
| GCAATTGCTCTTGTTGCTGT+TGG | 0.390798 | 8.3:+54807044 | MS.gene59809:CDS |
| TCCTACTCCTAATTCGATAG+TGG | 0.409711 | 8.3:+54807713 | MS.gene59809:CDS |
| AGGGCATTTGGAATGATTGC+TGG | 0.412351 | 8.3:+54808663 | MS.gene59809:CDS |
| AAATTTGAATCTTGCAGCAT+TGG | 0.413872 | 8.3:-54807685 | None:intergenic |
| AGCACCTGCCCCTGATATCC+AGG | 0.426304 | 8.3:+54809745 | MS.gene59809:CDS |
| TGCAGCATTGGGGCTGATCA+TGG | 0.437050 | 8.3:-54807673 | None:intergenic |
| TGGATATCAGGGGCAGGTGC+TGG | 0.440181 | 8.3:-54809743 | None:intergenic |
| ATATCTGAATCCAATGTGAT+TGG | 0.441409 | 8.3:-54808224 | None:intergenic |
| TTATGTAGGTTACCTTTAGT+AGG | 0.448970 | 8.3:-54809079 | None:intergenic |
| GGCTCCAAGTTCTGAGCAAA+AGG | 0.457665 | 8.3:-54807005 | None:intergenic |
| CCTTCATTTGTCTAAAATGG+TGG | 0.459897 | 8.3:-54808427 | None:intergenic |
| CCAAATGCCCTAACTTGACC+AGG | 0.467529 | 8.3:-54808651 | None:intergenic |
| GCAACTCATCTTGCAGCACT+TGG | 0.495897 | 8.3:+54809926 | MS.gene59809:CDS |
| TCGATAGTGGGACTTCCTGT+TGG | 0.502472 | 8.3:+54807726 | MS.gene59809:CDS |
| GCAATTAAACCTGGATATCA+GGG | 0.505823 | 8.3:-54809754 | None:intergenic |
| TTACAAACCTGGTCAAGTTA+GGG | 0.508630 | 8.3:+54808644 | MS.gene59809:CDS |
| CTTCATTTGTCTAAAATGGT+GGG | 0.509453 | 8.3:-54808426 | None:intergenic |
| AAGCTAAGTGTCATGTTGAA+TGG | 0.510044 | 8.3:-54806960 | None:intergenic |
| AGTAAATATAAGCAACCGTT+AGG | 0.512828 | 8.3:-54807067 | None:intergenic |
| TCTTGTTGCTGTTGGCCTAA+CGG | 0.513537 | 8.3:+54807052 | MS.gene59809:CDS |
| TGCAAGCAGATGTACCCAAA+TGG | 0.517984 | 8.3:+54808395 | MS.gene59809:intron |
| AGGTGACAACTTGGCCGTGA+AGG | 0.522801 | 8.3:+54808451 | MS.gene59809:CDS |
| CCACCATTCCATTTATTAGG+AGG | 0.525573 | 8.3:-54809680 | None:intergenic |
| GGTGACAACTTGGCCGTGAA+GGG | 0.526514 | 8.3:+54808452 | MS.gene59809:CDS |
| ATGGCTTTATTCATGGGTGG+TGG | 0.526824 | 8.3:-54809902 | None:intergenic |
| AATAAATGGAATGGTGGTGT+TGG | 0.539466 | 8.3:+54809686 | MS.gene59809:CDS |
| GATATCGTCCACTGTCACAT+TGG | 0.541108 | 8.3:-54809057 | None:intergenic |
| CTTGGCCGTGAAGGGCCCTA+AGG | 0.541711 | 8.3:+54808460 | MS.gene59809:CDS |
| AAGTACCTTAGGGCCCTTCA+CGG | 0.543318 | 8.3:-54808465 | None:intergenic |
| GTTGCTATGGCTTTATTCAT+GGG | 0.544781 | 8.3:-54809908 | None:intergenic |
| AATGAAGGAAGGTGACAACT+TGG | 0.552525 | 8.3:+54808442 | MS.gene59809:CDS |
| ATAAATGGAATGGTGGTGTT+GGG | 0.556556 | 8.3:+54809687 | MS.gene59809:CDS |
| AGTGGACGATATCCTACTAA+AGG | 0.561823 | 8.3:+54809067 | MS.gene59809:CDS |
| TAATAATAACTACACCTTTG+GGG | 0.566489 | 8.3:-54807100 | None:intergenic |
| ATCATATACTCCAATCACAT+TGG | 0.569714 | 8.3:+54808214 | MS.gene59809:CDS |
| TGCTGCAAGATGAGTTGCTA+TGG | 0.575868 | 8.3:-54809921 | None:intergenic |
| CAGCCTCCTAATAAATGGAA+TGG | 0.578707 | 8.3:+54809677 | MS.gene59809:intron |
| TAAACCTGGATATCAGGGGC+AGG | 0.589659 | 8.3:-54809749 | None:intergenic |
| CTATCGAATTAGGAGTAGGA+AGG | 0.591043 | 8.3:-54807710 | None:intergenic |
| CAAGTTCTGAGCAAAAGGTA+AGG | 0.593264 | 8.3:-54807000 | None:intergenic |
| CCTACTCCTAATTCGATAGT+GGG | 0.603737 | 8.3:+54807714 | MS.gene59809:CDS |
| GCATTTGGAATGATTGCTGG+AGG | 0.605362 | 8.3:+54808666 | MS.gene59809:CDS |
| GCTATGGCTTTATTCATGGG+TGG | 0.610095 | 8.3:-54809905 | None:intergenic |
| CATTTGTACCTGAAACATTG+GGG | 0.612740 | 8.3:-54808700 | None:intergenic |
| TGGTGTTGGGTACATATCAA+AGG | 0.615193 | 8.3:+54809700 | MS.gene59809:CDS |
| GGACGTTTCAGTTACAAACC+TGG | 0.618497 | 8.3:+54808633 | MS.gene59809:CDS |
| TATTAAGAACGTGAAAGACA+TGG | 0.621704 | 8.3:-54809402 | None:intergenic |
| AGCAGAGGAAGAGATAGTCA+AGG | 0.623400 | 8.3:+54808176 | MS.gene59809:intron |
| CCTCCTAATAAATGGAATGG+TGG | 0.626581 | 8.3:+54809680 | MS.gene59809:CDS |
| ATTTGAATCTTGCAGCATTG+GGG | 0.627950 | 8.3:-54807683 | None:intergenic |
| TATCGAATTAGGAGTAGGAA+GGG | 0.628539 | 8.3:-54807709 | None:intergenic |
| CCCACTATCGAATTAGGAGT+AGG | 0.636795 | 8.3:-54807714 | None:intergenic |
| TATTTACGCCAATGTGACAG+TGG | 0.658716 | 8.3:+54809049 | MS.gene59809:CDS |
| AAACCCAAAGGACAAAACAA+AGG | 0.684135 | 8.3:+54809019 | MS.gene59809:CDS |
| CAATTAAACCTGGATATCAG+GGG | 0.687288 | 8.3:-54809753 | None:intergenic |
| AGCCATACTAGAAAACCCAA+AGG | 0.689734 | 8.3:+54809007 | MS.gene59809:CDS |
| TGAAAGACATGGAATCTGTG+AGG | 0.721466 | 8.3:-54809391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATAAATTTGTCAATA+AGG | + | chr8.3:54807829-54807848 | MS.gene59809:intron | 10.0% |
| !!! | TTAAATTCTTTGAAATTTTT+GGG | - | chr8.3:54807639-54807658 | None:intergenic | 10.0% |
| !!! | TTTAAATTCTTTGAAATTTT+TGG | - | chr8.3:54807640-54807659 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTAAATTATTACT+AGG | - | chr8.3:54809849-54809868 | None:intergenic | 10.0% |
| !! | ATTTATTTGTTTAGATTAGA+TGG | - | chr8.3:54809440-54809459 | None:intergenic | 15.0% |
| !! | GAAAATTGATTATTGTTAAT+TGG | - | chr8.3:54809779-54809798 | None:intergenic | 15.0% |
| !! | TAATTCGAAATTAAAAACAT+TGG | - | chr8.3:54807247-54807266 | None:intergenic | 15.0% |
| !! | TTTGCACTTATTTAATAAAA+TGG | - | chr8.3:54809561-54809580 | None:intergenic | 15.0% |
| !!! | ACATTTAATTTTAACTCAAA+TGG | + | chr8.3:54808779-54808798 | MS.gene59809:intron | 15.0% |
| !!! | TATTTAATAAAATGGATTAG+CGG | - | chr8.3:54809553-54809572 | None:intergenic | 15.0% |
| !! | AATAATAATAACTACACCTT+TGG | - | chr8.3:54807105-54807124 | None:intergenic | 20.0% |
| !! | ACATGATTTCTTAATTATGT+AGG | - | chr8.3:54809096-54809115 | None:intergenic | 20.0% |
| !! | ACTTTCAAACAATTATAACA+TGG | - | chr8.3:54808933-54808952 | None:intergenic | 20.0% |
| !! | ATAATAATAACTACACCTTT+GGG | - | chr8.3:54807104-54807123 | None:intergenic | 20.0% |
| !! | GTGTTTGCTTAAAAATAAAA+GGG | - | chr8.3:54807902-54807921 | None:intergenic | 20.0% |
| !! | TAATTATAATATGAATTCGG+CGG | - | chr8.3:54808896-54808915 | None:intergenic | 20.0% |
| !! | TGAAAATGTAAGTATAACAA+TGG | + | chr8.3:54808593-54808612 | MS.gene59809:intron | 20.0% |
| !! | TTGTATATGTCAATATGAAA+AGG | - | chr8.3:54809805-54809824 | None:intergenic | 20.0% |
| !! | TTGTTACATCTATATATGTT+TGG | + | chr8.3:54809330-54809349 | MS.gene59809:intron | 20.0% |
| !!! | AATTTTTATTTTGCCTAAGA+TGG | - | chr8.3:54808495-54808514 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTGGACAAATTT+TGG | + | chr8.3:54808277-54808296 | MS.gene59809:intron | 20.0% |
| !!! | ATTTTTTCAACCAATAATTG+TGG | - | chr8.3:54807932-54807951 | None:intergenic | 20.0% |
| !!! | GTAATCTTTAAAAAATCAAG+CGG | - | chr8.3:54807411-54807430 | None:intergenic | 20.0% |
| !!! | GTATGAATCAAATATTTTCA+TGG | - | chr8.3:54807537-54807556 | None:intergenic | 20.0% |
| !!! | GTTTTTAAATTATTACTAGG+TGG | - | chr8.3:54809846-54809865 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTACATTCGTATT+TGG | - | chr8.3:54809502-54809521 | None:intergenic | 20.0% |
| ! | ATGTCAATTCTATGTTCAAA+CGG | + | chr8.3:54807370-54807389 | MS.gene59809:intron | 25.0% |
| ! | ATTTAATTCTCTTCTACATG+AGG | - | chr8.3:54809235-54809254 | None:intergenic | 25.0% |
| ! | CTTGAAAATTTAGTCCTTAA+AGG | + | chr8.3:54807507-54807526 | MS.gene59809:intron | 25.0% |
| ! | GATATAATGTATTTGTCAAG+TGG | + | chr8.3:54808058-54808077 | MS.gene59809:intron | 25.0% |
| ! | GGTGTTTGCTTAAAAATAAA+AGG | - | chr8.3:54807903-54807922 | None:intergenic | 25.0% |
| ! | TAAGTATAGCTTAGAATAGA+TGG | - | chr8.3:54807866-54807885 | None:intergenic | 25.0% |
| ! | TAATAATAACTACACCTTTG+GGG | - | chr8.3:54807103-54807122 | None:intergenic | 25.0% |
| ! | TATTACCATAGGAATATAGT+TGG | + | chr8.3:54809159-54809178 | MS.gene59809:intron | 25.0% |
| ! | TTTAAATTATTACTAGGTGG+TGG | - | chr8.3:54809843-54809862 | None:intergenic | 25.0% |
| !! | ATCTAAACGACAAAATTTTC+AGG | + | chr8.3:54807603-54807622 | MS.gene59809:intron | 25.0% |
| !! | GTGCAAAACTAATTTTATCT+TGG | + | chr8.3:54809574-54809593 | MS.gene59809:intron | 25.0% |
| !!! | CTATTTTGAATTAGTTGTGA+AGG | + | chr8.3:54808250-54808269 | MS.gene59809:CDS | 25.0% |
| !!! | TGAAAATTTTGTCGTTTAGA+TGG | - | chr8.3:54807604-54807623 | None:intergenic | 25.0% |
| AAATTTGAATCTTGCAGCAT+TGG | - | chr8.3:54807688-54807707 | None:intergenic | 30.0% | |
| AACATATGAACCATGATACA+TGG | - | chr8.3:54807288-54807307 | None:intergenic | 30.0% | |
| AATTTGAATCTTGCAGCATT+GGG | - | chr8.3:54807687-54807706 | None:intergenic | 30.0% | |
| ACATCTAAGTATCTGCAAAA+TGG | - | chr8.3:54809879-54809898 | None:intergenic | 30.0% | |
| AGTAAATATAAGCAACCGTT+AGG | - | chr8.3:54807070-54807089 | None:intergenic | 30.0% | |
| ATACAACTAGAGCAATACAT+GGG | - | chr8.3:54807785-54807804 | None:intergenic | 30.0% | |
| ATATCTGAATCCAATGTGAT+TGG | - | chr8.3:54808227-54808246 | None:intergenic | 30.0% | |
| ATCACATTGGATTCAGATAT+TGG | + | chr8.3:54808227-54808246 | MS.gene59809:CDS | 30.0% | |
| ATCATATACTCCAATCACAT+TGG | + | chr8.3:54808214-54808233 | MS.gene59809:CDS | 30.0% | |
| CTGCAACAAAAGATAATAAC+AGG | - | chr8.3:54808979-54808998 | None:intergenic | 30.0% | |
| CTTCCTTCATTTGTCTAAAA+TGG | - | chr8.3:54808433-54808452 | None:intergenic | 30.0% | |
| GTCATTCAAATAGACCTTAT+GGG | - | chr8.3:54807966-54807985 | None:intergenic | 30.0% | |
| TATAGAACTGCTATTACCAT+AGG | + | chr8.3:54809148-54809167 | MS.gene59809:intron | 30.0% | |
| TATTAAGAACGTGAAAGACA+TGG | - | chr8.3:54809405-54809424 | None:intergenic | 30.0% | |
| TCATTTGTACCTGAAACATT+GGG | - | chr8.3:54808704-54808723 | None:intergenic | 30.0% | |
| TCTTACCAACTATATTCCTA+TGG | - | chr8.3:54809167-54809186 | None:intergenic | 30.0% | |
| TGTCATTCAAATAGACCTTA+TGG | - | chr8.3:54807967-54807986 | None:intergenic | 30.0% | |
| TGTCTTTCACGTTCTTAATA+AGG | + | chr8.3:54809405-54809424 | MS.gene59809:CDS | 30.0% | |
| TGTTAATTGGCAATTAAACC+TGG | - | chr8.3:54809766-54809785 | None:intergenic | 30.0% | |
| TTATGTAGGTTACCTTTAGT+AGG | - | chr8.3:54809082-54809101 | None:intergenic | 30.0% | |
| TTCATTTGTACCTGAAACAT+TGG | - | chr8.3:54808705-54808724 | None:intergenic | 30.0% | |
| TTTCAACCAATAATTGTGGT+GGG | - | chr8.3:54807928-54807947 | None:intergenic | 30.0% | |
| TTTGTATAAATGTTGAGCAG+AGG | + | chr8.3:54808161-54808180 | MS.gene59809:intron | 30.0% | |
| ! | ATTACATTCGACTTAACTTG+TGG | + | chr8.3:54807426-54807445 | MS.gene59809:intron | 30.0% |
| ! | ATTGCACCATTTAGAATTTC+AGG | - | chr8.3:54807029-54807048 | None:intergenic | 30.0% |
| ! | ATTTTCATGGTCAACCTTTA+AGG | - | chr8.3:54807524-54807543 | None:intergenic | 30.0% |
| ! | ATTTTGCAGATACTTAGATG+TGG | + | chr8.3:54809878-54809897 | MS.gene59809:intron | 30.0% |
| ! | CATTTTAGACAAATGAAGGA+AGG | + | chr8.3:54808431-54808450 | MS.gene59809:CDS | 30.0% |
| ! | CTTCATTTGTCTAAAATGGT+GGG | - | chr8.3:54808429-54808448 | None:intergenic | 30.0% |
| ! | CTTTTTACATTCGTATTTGG+AGG | - | chr8.3:54809499-54809518 | None:intergenic | 30.0% |
| ! | GTTTAGAGCTTCAATTTCTT+GGG | - | chr8.3:54808538-54808557 | None:intergenic | 30.0% |
| ! | GTTTTACATCGTTTGAATCA+AGG | + | chr8.3:54807305-54807324 | MS.gene59809:intron | 30.0% |
| ! | TACAAATGAATCTGCCATTT+AGG | + | chr8.3:54808715-54808734 | MS.gene59809:intron | 30.0% |
| ! | TGTTTAGAGCTTCAATTTCT+TGG | - | chr8.3:54808539-54808558 | None:intergenic | 30.0% |
| ! | TTTTCAACCAATAATTGTGG+TGG | - | chr8.3:54807929-54807948 | None:intergenic | 30.0% |
| !! | GTGAAGGTACAATATTTTTG+TGG | + | chr8.3:54808266-54808285 | MS.gene59809:intron | 30.0% |
| !! | TAAGTATAACAATGGATTGC+TGG | + | chr8.3:54808601-54808620 | MS.gene59809:intron | 30.0% |
| !! | TTACATTCGACTTAACTTGT+GGG | + | chr8.3:54807427-54807446 | MS.gene59809:intron | 30.0% |
| AAACCCAAAGGACAAAACAA+AGG | + | chr8.3:54809019-54809038 | MS.gene59809:CDS | 35.0% | |
| AAGCTAAGTGTCATGTTGAA+TGG | - | chr8.3:54806963-54806982 | None:intergenic | 35.0% | |
| AATTGCACTCAAATCCCATA+AGG | + | chr8.3:54807949-54807968 | MS.gene59809:intron | 35.0% | |
| ACACCACCATTCCATTTATT+AGG | - | chr8.3:54809686-54809705 | None:intergenic | 35.0% | |
| AGAATCGTTCAAGAAAACCT+AGG | + | chr8.3:54808823-54808842 | MS.gene59809:intron | 35.0% | |
| ATCATCAAGACCATGTATCA+TGG | + | chr8.3:54807275-54807294 | MS.gene59809:intron | 35.0% | |
| ATTTGAATCTTGCAGCATTG+GGG | - | chr8.3:54807686-54807705 | None:intergenic | 35.0% | |
| CAATTAAACCTGGATATCAG+GGG | - | chr8.3:54809756-54809775 | None:intergenic | 35.0% | |
| CATTTGTACCTGAAACATTG+GGG | - | chr8.3:54808703-54808722 | None:intergenic | 35.0% | |
| GAAAACCTAGGTTTGATTCT+TGG | + | chr8.3:54808835-54808854 | MS.gene59809:intron | 35.0% | |
| GATACAACTAGAGCAATACA+TGG | - | chr8.3:54807786-54807805 | None:intergenic | 35.0% | |
| GCAATTAAACCTGGATATCA+GGG | - | chr8.3:54809757-54809776 | None:intergenic | 35.0% | |
| GTAAGGACTTGAAAAATGCA+GGG | - | chr8.3:54806986-54807005 | None:intergenic | 35.0% | |
| TACAACTAGAGCAATACATG+GGG | - | chr8.3:54807784-54807803 | None:intergenic | 35.0% | |
| TATCGAATTAGGAGTAGGAA+GGG | - | chr8.3:54807712-54807731 | None:intergenic | 35.0% | |
| TTACAAACCTGGTCAAGTTA+GGG | + | chr8.3:54808644-54808663 | MS.gene59809:CDS | 35.0% | |
| TTCATCCAAGAATCAAACCT+AGG | - | chr8.3:54808843-54808862 | None:intergenic | 35.0% | |
| TTGGAAAAAACATACTTGCC+AGG | + | chr8.3:54807745-54807764 | MS.gene59809:CDS | 35.0% | |
| TTGGAGCCTGAAATTCTAAA+TGG | + | chr8.3:54807020-54807039 | MS.gene59809:CDS | 35.0% | |
| TTTGACAGCCTCCTAATAAA+TGG | + | chr8.3:54809672-54809691 | MS.gene59809:intron | 35.0% | |
| ! | AAGGTACTTTCTACCATCTT+AGG | + | chr8.3:54808479-54808498 | MS.gene59809:intron | 35.0% |
| ! | AATAAATGGAATGGTGGTGT+TGG | + | chr8.3:54809686-54809705 | MS.gene59809:CDS | 35.0% |
| ! | ACATCTCTCTACTTCTAGAA+AGG | + | chr8.3:54807986-54808005 | MS.gene59809:intron | 35.0% |
| ! | AGAGCACTTATAAGATGAGA+TGG | + | chr8.3:54807205-54807224 | MS.gene59809:intron | 35.0% |
| ! | ATAAATGGAATGGTGGTGTT+GGG | + | chr8.3:54809687-54809706 | MS.gene59809:CDS | 35.0% |
| ! | ATCTTGGACACACATTTTCT+GGG | + | chr8.3:54809590-54809609 | MS.gene59809:intron | 35.0% |
| ! | CCACCATTTTAGACAAATGA+AGG | + | chr8.3:54808427-54808446 | MS.gene59809:CDS | 35.0% |
| ! | CCTTCATTTGTCTAAAATGG+TGG | - | chr8.3:54808430-54808449 | None:intergenic | 35.0% |
| ! | TATCTTGGACACACATTTTC+TGG | + | chr8.3:54809589-54809608 | MS.gene59809:intron | 35.0% |
| ! | TCTACTTCTAGAAAGGATCT+TGG | + | chr8.3:54807993-54808012 | MS.gene59809:intron | 35.0% |
| !! | AAGATGGTAGAAAGTACCTT+AGG | - | chr8.3:54808479-54808498 | None:intergenic | 35.0% |
| !! | AGATGGTAGAAAGTACCTTA+GGG | - | chr8.3:54808478-54808497 | None:intergenic | 35.0% |
| !! | AGCAAGAAAGTACTACTCTA+AGG | - | chr8.3:54809119-54809138 | None:intergenic | 35.0% |
| !! | AGTTGCTATGGCTTTATTCA+TGG | - | chr8.3:54809912-54809931 | None:intergenic | 35.0% |
| !! | CTATATATGTTTGGTGATGC+AGG | + | chr8.3:54809339-54809358 | MS.gene59809:intron | 35.0% |
| !! | GTTGCTATGGCTTTATTCAT+GGG | - | chr8.3:54809911-54809930 | None:intergenic | 35.0% |
| !!! | ACACCTTTGTTTTGTCCTTT+GGG | - | chr8.3:54809025-54809044 | None:intergenic | 35.0% |
| !!! | GACAAAATTTTCAGGTAGCT+TGG | + | chr8.3:54807611-54807630 | MS.gene59809:intron | 35.0% |
| !!! | GCAAGTATGTTTTTTCCAAC+AGG | - | chr8.3:54807744-54807763 | None:intergenic | 35.0% |
| !!! | TACACCTTTGTTTTGTCCTT+TGG | - | chr8.3:54809026-54809045 | None:intergenic | 35.0% |
| AATGAAGGAAGGTGACAACT+TGG | + | chr8.3:54808442-54808461 | MS.gene59809:CDS | 40.0% | |
| AGCCATACTAGAAAACCCAA+AGG | + | chr8.3:54809007-54809026 | MS.gene59809:CDS | 40.0% | |
| AGTGGACGATATCCTACTAA+AGG | + | chr8.3:54809067-54809086 | MS.gene59809:CDS | 40.0% | |
| CAGCCTCCTAATAAATGGAA+TGG | + | chr8.3:54809677-54809696 | MS.gene59809:intron | 40.0% | |
| CCACCATTCCATTTATTAGG+AGG | - | chr8.3:54809683-54809702 | None:intergenic | 40.0% | |
| CCTACTCCTAATTCGATAGT+GGG | + | chr8.3:54807714-54807733 | MS.gene59809:CDS | 40.0% | |
| CCTCCTAATAAATGGAATGG+TGG | + | chr8.3:54809680-54809699 | MS.gene59809:CDS | 40.0% | |
| CTATCGAATTAGGAGTAGGA+AGG | - | chr8.3:54807713-54807732 | None:intergenic | 40.0% | |
| CTGTCACATTGGCGTAAATA+AGG | - | chr8.3:54809049-54809068 | None:intergenic | 40.0% | |
| GGCAATTAAACCTGGATATC+AGG | - | chr8.3:54809758-54809777 | None:intergenic | 40.0% | |
| GGTAAGGACTTGAAAAATGC+AGG | - | chr8.3:54806987-54807006 | None:intergenic | 40.0% | |
| GTAGTACTTTCTTGCTTGTG+AGG | + | chr8.3:54809123-54809142 | MS.gene59809:intron | 40.0% | |
| GTTACAAACCTGGTCAAGTT+AGG | + | chr8.3:54808643-54808662 | MS.gene59809:CDS | 40.0% | |
| TACTATCGCAAAAACCCCAA+AGG | + | chr8.3:54807086-54807105 | MS.gene59809:CDS | 40.0% | |
| TATTTACGCCAATGTGACAG+TGG | + | chr8.3:54809049-54809068 | MS.gene59809:CDS | 40.0% | |
| TCCTACTCCTAATTCGATAG+TGG | + | chr8.3:54807713-54807732 | MS.gene59809:CDS | 40.0% | |
| TGAAAGACATGGAATCTGTG+AGG | - | chr8.3:54809394-54809413 | None:intergenic | 40.0% | |
| ! | ACTTCTAGAAAGGATCTTGG+AGG | + | chr8.3:54807996-54808015 | MS.gene59809:intron | 40.0% |
| ! | CTTACCTTTTGCTCAGAACT+TGG | + | chr8.3:54807001-54807020 | MS.gene59809:CDS | 40.0% |
| ! | GGTGGGACATTTTTCCATTT+GGG | - | chr8.3:54808412-54808431 | None:intergenic | 40.0% |
| ! | TGCCATTTAGGCACTTGAAA+AGG | + | chr8.3:54808727-54808746 | MS.gene59809:intron | 40.0% |
| ! | TGGTGGGACATTTTTCCATT+TGG | - | chr8.3:54808413-54808432 | None:intergenic | 40.0% |
| ! | TGGTGTTGGGTACATATCAA+AGG | + | chr8.3:54809700-54809719 | MS.gene59809:CDS | 40.0% |
| !! | AACCAATAATTGTGGTGGGT+GGG | - | chr8.3:54807924-54807943 | None:intergenic | 40.0% |
| !! | CAAGTTCTGAGCAAAAGGTA+AGG | - | chr8.3:54807003-54807022 | None:intergenic | 40.0% |
| !! | GTCCTTTGGGTTTTCTAGTA+TGG | - | chr8.3:54809012-54809031 | None:intergenic | 40.0% |
| !! | TAGGTGGTGGTGATTTTTCT+TGG | - | chr8.3:54809830-54809849 | None:intergenic | 40.0% |
| !!! | CACCTTTTCAAGTGCCTAAA+TGG | - | chr8.3:54808732-54808751 | None:intergenic | 40.0% |
| !!! | TGGGGAATCTTTTTCAAACC+TGG | - | chr8.3:54807766-54807785 | None:intergenic | 40.0% |
| AGCAGAGGAAGAGATAGTCA+AGG | + | chr8.3:54808176-54808195 | MS.gene59809:intron | 45.0% | |
| AGGCATTACCCCAATGTTTC+AGG | + | chr8.3:54808692-54808711 | MS.gene59809:CDS | 45.0% | |
| CCCACTATCGAATTAGGAGT+AGG | - | chr8.3:54807717-54807736 | None:intergenic | 45.0% | |
| GATATCGTCCACTGTCACAT+TGG | - | chr8.3:54809060-54809079 | None:intergenic | 45.0% | |
| GCAATTGCTCTTGTTGCTGT+TGG | + | chr8.3:54807044-54807063 | MS.gene59809:CDS | 45.0% | |
| GGAAGTCCCACTATCGAATT+AGG | - | chr8.3:54807723-54807742 | None:intergenic | 45.0% | |
| GGACGTTTCAGTTACAAACC+TGG | + | chr8.3:54808633-54808652 | MS.gene59809:CDS | 45.0% | |
| TGCAAGCAGATGTACCCAAA+TGG | + | chr8.3:54808395-54808414 | MS.gene59809:intron | 45.0% | |
| TGCTGCAAGATGAGTTGCTA+TGG | - | chr8.3:54809924-54809943 | None:intergenic | 45.0% | |
| ! | AGGGCATTTGGAATGATTGC+TGG | + | chr8.3:54808663-54808682 | MS.gene59809:CDS | 45.0% |
| ! | ATGGATTGCTGGAGCTTGTA+GGG | + | chr8.3:54808612-54808631 | MS.gene59809:intron | 45.0% |
| ! | CAACCAATAATTGTGGTGGG+TGG | - | chr8.3:54807925-54807944 | None:intergenic | 45.0% |
| ! | GCATTTGGAATGATTGCTGG+AGG | + | chr8.3:54808666-54808685 | MS.gene59809:CDS | 45.0% |
| ! | TCTTGTTGCTGTTGGCCTAA+CGG | + | chr8.3:54807052-54807071 | MS.gene59809:CDS | 45.0% |
| !! | AATGGATTGCTGGAGCTTGT+AGG | + | chr8.3:54808611-54808630 | MS.gene59809:intron | 45.0% |
| !! | ATGGCTTTATTCATGGGTGG+TGG | - | chr8.3:54809905-54809924 | None:intergenic | 45.0% |
| !! | GCTATGGCTTTATTCATGGG+TGG | - | chr8.3:54809908-54809927 | None:intergenic | 45.0% |
| !! | AAATAATTATAATATGAATT+CGG | - | chr8.3:54808899-54808918 | None:intergenic | 5.0% |
| !! | AATAAATATTTGAAAAAAAA+AGG | + | chr8.3:54808114-54808133 | MS.gene59809:intron | 5.0% |
| !! | TAATAATTTAAAAACAAAAA+TGG | + | chr8.3:54809851-54809870 | MS.gene59809:intron | 5.0% |
| !!! | TTTTTTTCAAATATTTATTA+AGG | - | chr8.3:54808113-54808132 | None:intergenic | 5.0% |
| AAGTACCTTAGGGCCCTTCA+CGG | - | chr8.3:54808468-54808487 | None:intergenic | 50.0% | |
| CACCCACCCACCACAATTAT+TGG | + | chr8.3:54807919-54807938 | MS.gene59809:intron | 50.0% | |
| CCAAATGCCCTAACTTGACC+AGG | - | chr8.3:54808654-54808673 | None:intergenic | 50.0% | |
| GCAACTCATCTTGCAGCACT+TGG | + | chr8.3:54809926-54809945 | MS.gene59809:CDS | 50.0% | |
| GGAATGATTGCTGGAGGTTC+AGG | + | chr8.3:54808672-54808691 | MS.gene59809:CDS | 50.0% | |
| TAAACCTGGATATCAGGGGC+AGG | - | chr8.3:54809752-54809771 | None:intergenic | 50.0% | |
| ! | CCTGGTCAAGTTAGGGCATT+TGG | + | chr8.3:54808651-54808670 | MS.gene59809:CDS | 50.0% |
| !! | GGCTCCAAGTTCTGAGCAAA+AGG | - | chr8.3:54807008-54807027 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGACTTCCTGT+TGG | + | chr8.3:54807726-54807745 | MS.gene59809:CDS | 50.0% |
| AGGTGACAACTTGGCCGTGA+AGG | + | chr8.3:54808451-54808470 | MS.gene59809:CDS | 55.0% | |
| GGTGACAACTTGGCCGTGAA+GGG | + | chr8.3:54808452-54808471 | MS.gene59809:CDS | 55.0% | |
| ! | TGCAGCATTGGGGCTGATCA+TGG | - | chr8.3:54807676-54807695 | None:intergenic | 55.0% |
| AGCACCTGCCCCTGATATCC+AGG | + | chr8.3:54809745-54809764 | MS.gene59809:CDS | 60.0% | |
| TGGATATCAGGGGCAGGTGC+TGG | - | chr8.3:54809746-54809765 | None:intergenic | 60.0% | |
| CTTGGCCGTGAAGGGCCCTA+AGG | + | chr8.3:54808460-54808479 | MS.gene59809:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 54806948 | 54809979 | 54806948 | ID=MS.gene59809 |
| chr8.3 | mRNA | 54806948 | 54809979 | 54806948 | ID=MS.gene59809.t1;Parent=MS.gene59809 |
| chr8.3 | exon | 54806948 | 54807107 | 54806948 | ID=MS.gene59809.t1.exon1;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54806948 | 54807107 | 54806948 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54807625 | 54807766 | 54807625 | ID=MS.gene59809.t1.exon2;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54807625 | 54807766 | 54807625 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54808181 | 54808271 | 54808181 | ID=MS.gene59809.t1.exon3;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54808181 | 54808271 | 54808181 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54808404 | 54808481 | 54808404 | ID=MS.gene59809.t1.exon4;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54808404 | 54808481 | 54808404 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54808633 | 54808713 | 54808633 | ID=MS.gene59809.t1.exon5;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54808633 | 54808713 | 54808633 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54808999 | 54809088 | 54808999 | ID=MS.gene59809.t1.exon6;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54808999 | 54809088 | 54808999 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54809361 | 54809426 | 54809361 | ID=MS.gene59809.t1.exon7;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54809361 | 54809426 | 54809361 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54809680 | 54809766 | 54809680 | ID=MS.gene59809.t1.exon8;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54809680 | 54809766 | 54809680 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| chr8.3 | exon | 54809887 | 54809979 | 54809887 | ID=MS.gene59809.t1.exon9;Parent=MS.gene59809.t1 |
| chr8.3 | CDS | 54809887 | 54809979 | 54809887 | ID=cds.MS.gene59809.t1;Parent=MS.gene59809.t1 |
| Gene Sequence |
| Protein sequence |
