AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60088.t1 MTR_6g452730 97.917 192 4 0 7 198 1 192 2.74e-140 389
MS.gene60088.t1 MTR_1g101120 72.727 198 54 0 1 198 1 198 1.03e-107 307
MS.gene60088.t1 MTR_4g018880 48.276 174 78 1 21 194 18 179 9.58e-57 177
MS.gene60088.t1 MTR_7g066110 51.497 167 75 3 16 177 1 166 1.71e-56 176
MS.gene60088.t1 MTR_4g018860 50.625 160 78 1 10 169 7 165 2.92e-54 172
MS.gene60088.t1 MTR_4g018850 49.697 165 71 1 30 194 27 179 1.38e-53 170
MS.gene60088.t1 MTR_4g018880 53.913 115 53 0 21 135 18 132 3.64e-44 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60088.t1 AT5G52390 57.143 196 70 6 11 198 6 195 3.30e-71 214
MS.gene60088.t1 AT3G54040 50.000 162 74 3 28 189 26 180 4.07e-52 166
MS.gene60088.t1 AT3G54040 50.000 162 74 3 28 189 82 236 1.99e-51 166

Find 39 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATTAGCATGAGAAATT+TGG 0.277141 6.1:+34464075 MS.gene60088:CDS
GATTGAAGCTGATAAATTAA+AGG 0.308737 6.1:+34466467 MS.gene60088:CDS
TTCATGGCTTCAGAGGATTC+TGG 0.318318 6.1:-34467493 None:intergenic
GGTGGGATTGTTGGTGCAAC+TGG 0.322423 6.1:-34467532 None:intergenic
GCACCAGGACCGTTGCATTC+TGG 0.336818 6.1:+34467451 MS.gene60088:CDS
AATTTCTCATGCTAATGTTA+AGG 0.338744 6.1:-34464072 None:intergenic
TGCATTGGTCACTTTCAATA+TGG 0.343401 6.1:-34466491 None:intergenic
ATTTCTCATGCTAATGTTAA+GGG 0.343971 6.1:-34464071 None:intergenic
AGGTTCAACTGTGAGTTTCA+TGG 0.344462 6.1:-34467509 None:intergenic
ATGCATTAAGTCTTGTGGTT+TGG 0.385790 6.1:+34466509 MS.gene60088:CDS
TGCTAATGCTCGTCGAGAAA+TGG 0.427098 6.1:+34467402 MS.gene60088:CDS
ACTTAGAATGGTGGGATTGT+TGG 0.430110 6.1:-34467541 None:intergenic
GAGAAGCATGTAAAGAGAAA+TGG 0.432034 6.1:+34466414 MS.gene60088:CDS
ACCTTGAGCCTCACACAACT+TGG 0.437313 6.1:-34467380 None:intergenic
GGTTTGGACAGAAAATCCTT+TGG 0.451628 6.1:+34466525 MS.gene60088:CDS
CTGCAAATGCGCACGTGTCT+TGG 0.455864 6.1:-34466362 None:intergenic
CTCTACTTCAACCTTGCTGC+TGG 0.455905 6.1:+34466636 MS.gene60088:CDS
AAGTAGAGATCAACAATGTT+GGG 0.477139 6.1:-34466621 None:intergenic
GAAGTAGAGATCAACAATGT+TGG 0.484563 6.1:-34466622 None:intergenic
ATGGCTGAGATCAAAAGCTC+TGG 0.492168 6.1:+34467421 MS.gene60088:CDS
GTTGCAGTGGAAGGAACTCT+AGG 0.510275 6.1:+34464121 MS.gene60088:CDS
AAAAGCTCTCCTACTTAGAA+TGG 0.511709 6.1:-34467553 None:intergenic
TTTCCAGAATGCAACGGTCC+TGG 0.512876 6.1:-34467454 None:intergenic
TTCAACCTTGCTGCTGGTGA+AGG 0.536326 6.1:+34466642 MS.gene60088:CDS
GACCAATGCATTAAGTCTTG+TGG 0.538802 6.1:+34466504 MS.gene60088:CDS
CCCAAGTTGTGTGAGGCTCA+AGG 0.543865 6.1:+34467379 MS.gene60088:CDS
AGCTCTCCTACTTAGAATGG+TGG 0.544053 6.1:-34467550 None:intergenic
GGGATTGTTGGTGCAACTGG+AGG 0.551808 6.1:-34467529 None:intergenic
GCATTTGCAGTGTCATCTGC+AGG 0.559460 6.1:+34466375 MS.gene60088:CDS
CCTTGAGCCTCACACAACTT+GGG 0.562458 6.1:-34467379 None:intergenic
TGTGAGTTTCATGGCTTCAG+AGG 0.570124 6.1:-34467500 None:intergenic
GCTCTCCTACTTAGAATGGT+GGG 0.572840 6.1:-34467549 None:intergenic
AGCTCTGGAATTGTTGCACC+AGG 0.572975 6.1:+34467436 MS.gene60088:CDS
TGTAACACTGAGGAGAACAA+AGG 0.597700 6.1:-34466590 None:intergenic
AACCACAAGACTTAATGCAT+TGG 0.598582 6.1:-34466506 None:intergenic
GTTTCTTCCCAAGTTGTGTG+AGG 0.613393 6.1:+34467372 MS.gene60088:CDS
AGAATCAGATGATATTCCAA+AGG 0.620017 6.1:-34466541 None:intergenic
GTGTACCTTCACCAGCAGCA+AGG 0.664846 6.1:-34466647 None:intergenic
ATGAACTTTCCAGAATGCAA+CGG 0.670221 6.1:-34467460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTATAAATTTTTTT+GGG + chr6.1:34464990-34465009 MS.gene60088:intron 0.0%
!!! TAAAAAATTATAAATTTTTT+TGG + chr6.1:34464989-34465008 MS.gene60088:intron 0.0%
!! AAAAATCGTAAAAAAAAATT+CGG + chr6.1:34466028-34466047 MS.gene60088:intron 10.0%
!! ACAAAAATTAACTTAATAAT+AGG + chr6.1:34465064-34465083 MS.gene60088:intron 10.0%
!! ATTATAAATGACAAAAAAAA+TGG - chr6.1:34466920-34466939 None:intergenic 10.0%
!! CAAAAATTAACTTAATAATA+GGG + chr6.1:34465065-34465084 MS.gene60088:intron 10.0%
!! TTTGATTCAAATTAATATAA+AGG - chr6.1:34467276-34467295 None:intergenic 10.0%
!!! ACAAAATCAATATTTTTAAA+AGG + chr6.1:34465514-34465533 MS.gene60088:intron 10.0%
!!! ATATTTTCATCTTTAATTTT+TGG + chr6.1:34465296-34465315 MS.gene60088:intron 10.0%
!!! ATTTTCTTTTAATTATGTAT+AGG + chr6.1:34467346-34467365 MS.gene60088:intron 10.0%
!!! CAAAATCAATATTTTTAAAA+GGG + chr6.1:34465515-34465534 MS.gene60088:intron 10.0%
!! AAAAACCGTAAAAAAAAATT+CGG + chr6.1:34465868-34465887 MS.gene60088:intron 15.0%
!! AAAATCGTAAAAAAAAATTC+GGG + chr6.1:34466029-34466048 MS.gene60088:intron 15.0%
!! ATAGAAAAATTGAATTAGTA+AGG + chr6.1:34465215-34465234 MS.gene60088:intron 15.0%
!! CAAAAAAACTTAACTAATTT+AGG - chr6.1:34464246-34464265 None:intergenic 15.0%
!! GAAAATTTGGTATATTTATA+GGG + chr6.1:34465156-34465175 MS.gene60088:intron 15.0%
!!! AATTTTCTTATAAATGTGAT+TGG - chr6.1:34465337-34465356 None:intergenic 15.0%
!!! AGAATTTTAAAGGATTTTAA+AGG + chr6.1:34466887-34466906 MS.gene60088:intron 15.0%
!!! ATATGATTTTACTTTAAAAG+AGG - chr6.1:34464813-34464832 None:intergenic 15.0%
!!! ATGAATTTTATGTTTTAAGT+CGG - chr6.1:34466758-34466777 None:intergenic 15.0%
!!! CTGAAAAAACTAAAATTTTT+CGG + chr6.1:34465842-34465861 MS.gene60088:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr6.1:34465096-34465115 MS.gene60088:intron 15.0%
!!! TATGATTTTACTTTAAAAGA+GGG - chr6.1:34464812-34464831 None:intergenic 15.0%
!!! TATTTAATCCTTTCTTTTAA+TGG + chr6.1:34465189-34465208 MS.gene60088:intron 15.0%
!!! TTGAATTTTTAAAGTTTTGA+TGG + chr6.1:34464488-34464507 MS.gene60088:intron 15.0%
!!! TTTATAATACAAGTATTTTG+TGG + chr6.1:34466932-34466951 MS.gene60088:intron 15.0%
!! AAAACCGTAAAAAAAAATTC+GGG + chr6.1:34465869-34465888 MS.gene60088:intron 20.0%
!! AAGGAAAAAAAAATAAGTCA+GGG - chr6.1:34465717-34465736 None:intergenic 20.0%
!! ATAATTCATGAAGATAATGA+TGG - chr6.1:34467217-34467236 None:intergenic 20.0%
!! CGAAAATTTGGTATATTTAT+AGG + chr6.1:34465155-34465174 MS.gene60088:intron 20.0%
!! GAATTAATTCAAGTCAAATA+AGG - chr6.1:34464523-34464542 None:intergenic 20.0%
!! TAAGGAAAAAAAAATAAGTC+AGG - chr6.1:34465718-34465737 None:intergenic 20.0%
!! TCAAATGATTAAGAATTACA+GGG + chr6.1:34466173-34466192 MS.gene60088:intron 20.0%
!! TCAAATGATTAAGAATTACA+GGG - chr6.1:34466192-34466173 None:intergenic 20.0%
!!! AAATCTCGATTTTAAAAACT+TGG + chr6.1:34467185-34467204 MS.gene60088:intron 20.0%
!!! ACAAAACCATTATTTTAGAA+AGG - chr6.1:34466277-34466296 None:intergenic 20.0%
!!! ACAAAATCGTAGAATTTTAA+AGG + chr6.1:34466877-34466896 MS.gene60088:intron 20.0%
!!! CAAAACCATTATTTTAGAAA+GGG - chr6.1:34466276-34466295 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG + chr6.1:34466002-34466021 MS.gene60088:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr6.1:34465095-34465114 MS.gene60088:intron 20.0%
!!! TAAAATTCTACGATTTTGTA+TGG - chr6.1:34466876-34466895 None:intergenic 20.0%
!!! TGAAGATTGAAAACTTTTAA+GGG - chr6.1:34464781-34464800 None:intergenic 20.0%
!!! TTTTACCCTTTCTAAAATAA+TGG + chr6.1:34466268-34466287 MS.gene60088:intron 20.0%
!!! TTTTCCCGAATTTTTTTTTA+CGG - chr6.1:34465876-34465895 None:intergenic 20.0%
!!! TTTTTTTATAAATGTGACTG+AGG + chr6.1:34465450-34465469 MS.gene60088:intron 20.0%
! AAAAAAATTCGGGAAAAAAC+TGG + chr6.1:34465879-34465898 MS.gene60088:intron 25.0%
! AAAAAATTCGGGAAAAAACT+GGG + chr6.1:34465880-34465899 MS.gene60088:intron 25.0%
! AATTCTCTCATTAAGTTTAG+TGG + chr6.1:34465254-34465273 MS.gene60088:intron 25.0%
! AATTTCTCATGCTAATGTTA+AGG - chr6.1:34464075-34464094 None:intergenic 25.0%
! AGGAAAAAAAAATAAGTCAG+GGG - chr6.1:34465716-34465735 None:intergenic 25.0%
! ATTTCTCATGCTAATGTTAA+GGG - chr6.1:34464074-34464093 None:intergenic 25.0%
! CCATCAAAACTATCAAAATA+AGG - chr6.1:34464605-34464624 None:intergenic 25.0%
! CTCAAATGATTAAGAATTAC+AGG + chr6.1:34466172-34466191 MS.gene60088:intron 25.0%
! CTCAAATGATTAAGAATTAC+AGG - chr6.1:34466191-34466172 None:intergenic 25.0%
! GATTGAAGCTGATAAATTAA+AGG + chr6.1:34466467-34466486 MS.gene60088:CDS 25.0%
! TAACATTAGCATGAGAAATT+TGG + chr6.1:34464075-34464094 MS.gene60088:CDS 25.0%
! TCATATAGATCTCTAATATG+TGG + chr6.1:34466297-34466316 MS.gene60088:intron 25.0%
! TCTATCAACCATTAAAAGAA+AGG - chr6.1:34465200-34465219 None:intergenic 25.0%
! TGACTTGAATTAATTCATAG+AGG + chr6.1:34464527-34464546 MS.gene60088:intron 25.0%
! TTCTTATAAATGTGATTGGA+TGG - chr6.1:34465333-34465352 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr6.1:34465124-34465143 MS.gene60088:intron 25.0%
!! AATGAAGTTTAAGATCATGA+TGG - chr6.1:34464165-34464184 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr6.1:34465125-34465144 MS.gene60088:intron 25.0%
!! ATGAAGTTTAAGATCATGAT+GGG - chr6.1:34464164-34464183 None:intergenic 25.0%
!! CTAATTTAGGTTAACATGAA+TGG - chr6.1:34464233-34464252 None:intergenic 25.0%
!! GTGAAGATTGAAAACTTTTA+AGG - chr6.1:34464782-34464801 None:intergenic 25.0%
!! TATCTAGTTTAGTTATCTAC+AGG - chr6.1:34464563-34464582 None:intergenic 25.0%
!! TATTTTGTGGACTTTAAACT+GGG + chr6.1:34466945-34466964 MS.gene60088:intron 25.0%
!!! ACTAAACTAGATAGTTTTGA+TGG + chr6.1:34464570-34464589 MS.gene60088:intron 25.0%
!!! CCTTATTTTGATAGTTTTGA+TGG + chr6.1:34464602-34464621 MS.gene60088:intron 25.0%
!!! GAAGTTTTGAATTTAAATGC+TGG + chr6.1:34464434-34464453 MS.gene60088:intron 25.0%
!!! GATTTTGATGCTATTTAACT+AGG - chr6.1:34466846-34466865 None:intergenic 25.0%
!!! TATTTTGTCGACTTTAAACT+TGG + chr6.1:34467039-34467058 MS.gene60088:intron 25.0%
AAAAAAATTCGGGAAAAAGC+TGG + chr6.1:34466039-34466058 MS.gene60088:intron 30.0%
AAAAAATTCGGGAAAAAGCT+GGG + chr6.1:34466040-34466059 MS.gene60088:intron 30.0%
AAAATCGCAATCAAAATCGA+TGG - chr6.1:34467126-34467145 None:intergenic 30.0%
AAATTTCGTCCTATCTTACA+TGG + chr6.1:34464353-34464372 MS.gene60088:intron 30.0%
AAGGAAAAAAAATAAGCCAG+GGG + chr6.1:34466075-34466094 MS.gene60088:intron 30.0%
AAGTAGAGATCAACAATGTT+GGG - chr6.1:34466624-34466643 None:intergenic 30.0%
ACGTCAGCAAATTACAAAAA+TGG - chr6.1:34466121-34466140 None:intergenic 30.0%
AGAATCAGATGATATTCCAA+AGG - chr6.1:34466544-34466563 None:intergenic 30.0%
AGCAAATTACAAAAATGGCA+TGG - chr6.1:34466116-34466135 None:intergenic 30.0%
CACTGCAACAAAAAATACAA+AGG - chr6.1:34464110-34464129 None:intergenic 30.0%
CATTGAACAACATATGTATC+TGG + chr6.1:34465373-34465392 MS.gene60088:intron 30.0%
CTATGAATTTGAGTCATTGA+AGG - chr6.1:34466800-34466819 None:intergenic 30.0%
GAAGGAAAAAAAATAAGCCA+GGG + chr6.1:34466074-34466093 MS.gene60088:intron 30.0%
GACTTCTAGATAACTAAACT+TGG + chr6.1:34464694-34464713 MS.gene60088:intron 30.0%
GCAAATTACAAAAATGGCAT+GGG - chr6.1:34466115-34466134 None:intergenic 30.0%
GTGAAAATCACCATCAAATA+AGG - chr6.1:34464637-34464656 None:intergenic 30.0%
TGAAGGAAAAAAAATAAGCC+AGG + chr6.1:34466073-34466092 MS.gene60088:intron 30.0%
TGTGGTGAAATTAATATTGC+AGG + chr6.1:34466315-34466334 MS.gene60088:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr6.1:34465111-34465130 MS.gene60088:intron 30.0%
! AACTAGGATTTTGCTTGTTT+TGG - chr6.1:34466830-34466849 None:intergenic 30.0%
! AGCTGGGAATAAAATTTTGA+AGG + chr6.1:34466056-34466075 MS.gene60088:intron 30.0%
! GTATTTTGTGGACTTTAAAC+TGG + chr6.1:34466944-34466963 MS.gene60088:intron 30.0%
!! ACTAGGATTTTGCTTGTTTT+GGG - chr6.1:34466829-34466848 None:intergenic 30.0%
!! GTGATTTTCACCTTATTTGA+TGG + chr6.1:34464624-34464643 MS.gene60088:intron 30.0%
!!! ATTTTTGTAATTTGCTGACG+TGG + chr6.1:34466120-34466139 MS.gene60088:intron 30.0%
!!! CTTTGTATTTTTTGTTGCAG+TGG + chr6.1:34464108-34464127 MS.gene60088:CDS 30.0%
AACCACAAGACTTAATGCAT+TGG - chr6.1:34466509-34466528 None:intergenic 35.0%
AAGAATTACAGGGACAAGAT+GGG + chr6.1:34466183-34466202 MS.gene60088:intron 35.0%
AAGAATTACAGGGACAAGAT+GGG - chr6.1:34466202-34466183 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG + chr6.1:34465670-34465689 MS.gene60088:intron 35.0%
AGCAAATTACCAAAATGGCA+TGG + chr6.1:34465675-34465694 MS.gene60088:intron 35.0%
ATGAACTTTCCAGAATGCAA+CGG - chr6.1:34467463-34467482 None:intergenic 35.0%
GAAGTAGAGATCAACAATGT+TGG - chr6.1:34466625-34466644 None:intergenic 35.0%
GAGGGACTAAAACGAAAATT+TGG + chr6.1:34465143-34465162 MS.gene60088:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG + chr6.1:34465676-34465695 MS.gene60088:intron 35.0%
GGTGAAATTAATATTGCAGG+AGG + chr6.1:34466318-34466337 MS.gene60088:intron 35.0%
TAAGAATTACAGGGACAAGA+TGG + chr6.1:34466182-34466201 MS.gene60088:intron 35.0%
TAAGAATTACAGGGACAAGA+TGG - chr6.1:34466201-34466182 None:intergenic 35.0%
TCAAATGACCCCTAATTACA+GGG + chr6.1:34466233-34466252 MS.gene60088:intron 35.0%
TCAAATGACCCCTAATTACA+GGG - chr6.1:34466252-34466233 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG + chr6.1:34466232-34466251 MS.gene60088:intron 35.0%
TTCAAATGACCCCTAATTAC+AGG - chr6.1:34466251-34466232 None:intergenic 35.0%
! AGATTTTGCTTCACGTCTAA+AGG - chr6.1:34467171-34467190 None:intergenic 35.0%
! AGTCGGAATTTTCACTACAA+TGG - chr6.1:34466741-34466760 None:intergenic 35.0%
! ATGCATTAAGTCTTGTGGTT+TGG + chr6.1:34466509-34466528 MS.gene60088:CDS 35.0%
! GAGAAGCATGTAAAGAGAAA+TGG + chr6.1:34466414-34466433 MS.gene60088:CDS 35.0%
! GATTTTGCTTCACGTCTAAA+GGG - chr6.1:34467170-34467189 None:intergenic 35.0%
! TGCATTGGTCACTTTCAATA+TGG - chr6.1:34466494-34466513 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG - chr6.1:34465671-34465690 None:intergenic 35.0%
!!! GTATTTTTTGTTGCAGTGGA+AGG + chr6.1:34464112-34464131 MS.gene60088:CDS 35.0%
AGGTTCAACTGTGAGTTTCA+TGG - chr6.1:34467512-34467531 None:intergenic 40.0%
GACCAATGCATTAAGTCTTG+TGG + chr6.1:34466504-34466523 MS.gene60088:CDS 40.0%
GGTTTGGACAGAAAATCCTT+TGG + chr6.1:34466525-34466544 MS.gene60088:CDS 40.0%
TGACGTGGCAGTGATTAAAA+GGG + chr6.1:34466135-34466154 MS.gene60088:intron 40.0%
TGACGTGGCAGTGATTAAAA+GGG - chr6.1:34466154-34466135 None:intergenic 40.0%
TGTAACACTGAGGAGAACAA+AGG - chr6.1:34466593-34466612 None:intergenic 40.0%
TTTCGTCCTATCTTACATGG+AGG + chr6.1:34464356-34464375 MS.gene60088:intron 40.0%
! CTTTTCGTCCCTGTAATTAG+GGG + chr6.1:34465547-34465566 MS.gene60088:intron 40.0%
! CTTTTCGTCCCTGTAATTAG+GGG - chr6.1:34465566-34465547 None:intergenic 40.0%
! GCTTTTCGTCCCTGTAATTA+GGG + chr6.1:34465546-34465565 MS.gene60088:intron 40.0%
! GCTTTTCGTCCCTGTAATTA+GGG - chr6.1:34465565-34465546 None:intergenic 40.0%
! GGACAACTTTTGTAACACTG+AGG - chr6.1:34466603-34466622 None:intergenic 40.0%
! TGCTTTTCGTCCCTGTAATT+AGG + chr6.1:34465545-34465564 MS.gene60088:intron 40.0%
! TGCTTTTCGTCCCTGTAATT+AGG - chr6.1:34465564-34465545 None:intergenic 40.0%
!! TGTCATTTCCCATGCCATTT+TGG - chr6.1:34465687-34465706 None:intergenic 40.0%
AATTACAGGGACAAGATGGG+AGG + chr6.1:34466186-34466205 MS.gene60088:intron 45.0%
AATTACAGGGACAAGATGGG+AGG - chr6.1:34466205-34466186 None:intergenic 45.0%
ATGGCTGAGATCAAAAGCTC+TGG + chr6.1:34467421-34467440 MS.gene60088:CDS 45.0%
CACACACCTCCATGTAAGAT+AGG - chr6.1:34464365-34464384 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG + chr6.1:34466134-34466153 MS.gene60088:intron 45.0%
CTGACGTGGCAGTGATTAAA+AGG - chr6.1:34466153-34466134 None:intergenic 45.0%
GACGTGGCAGTGATTAAAAG+GGG + chr6.1:34466136-34466155 MS.gene60088:intron 45.0%
GACGTGGCAGTGATTAAAAG+GGG - chr6.1:34466155-34466136 None:intergenic 45.0%
GGAAATGACGAAAATACCCC+TGG - chr6.1:34466094-34466113 None:intergenic 45.0%
GTTTCTTCCCAAGTTGTGTG+AGG + chr6.1:34467372-34467391 MS.gene60088:CDS 45.0%
TGCTAATGCTCGTCGAGAAA+TGG + chr6.1:34467402-34467421 MS.gene60088:CDS 45.0%
TGTGAGTTTCATGGCTTCAG+AGG - chr6.1:34467503-34467522 None:intergenic 45.0%
TTCATGGCTTCAGAGGATTC+TGG - chr6.1:34467496-34467515 None:intergenic 45.0%
TTTGCTTCACGTCTAAAGGG+AGG - chr6.1:34467167-34467186 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr6.1:34466201-34466220 MS.gene60088:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr6.1:34466220-34466201 None:intergenic 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr6.1:34466202-34466221 MS.gene60088:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr6.1:34466221-34466202 None:intergenic 45.0%
!! TTAAAAAACATAAAAAATTT+CGG + chr6.1:34465957-34465976 MS.gene60088:intron 5.0%
!! TTAAAAATCATAAAAAATTT+CGG + chr6.1:34465797-34465816 MS.gene60088:intron 5.0%
!!! AAATTTTGAAATTTTTTTTA+AGG - chr6.1:34465736-34465755 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+AGG + chr6.1:34464936-34464955 MS.gene60088:intron 5.0%
ACCTTGAGCCTCACACAACT+TGG - chr6.1:34467383-34467402 None:intergenic 50.0%
CCTTGAGCCTCACACAACTT+GGG - chr6.1:34467382-34467401 None:intergenic 50.0%
CTCTACTTCAACCTTGCTGC+TGG + chr6.1:34466636-34466655 MS.gene60088:CDS 50.0%
GCAGTGATTAAAAGGGGCGA+GGG + chr6.1:34466142-34466161 MS.gene60088:intron 50.0%
GCAGTGATTAAAAGGGGCGA+GGG - chr6.1:34466161-34466142 None:intergenic 50.0%
GCATTTGCAGTGTCATCTGC+AGG + chr6.1:34466375-34466394 MS.gene60088:CDS 50.0%
GTTGCAGTGGAAGGAACTCT+AGG + chr6.1:34464121-34464140 MS.gene60088:CDS 50.0%
TTCAACCTTGCTGCTGGTGA+AGG + chr6.1:34466642-34466661 MS.gene60088:CDS 50.0%
TTTCCAGAATGCAACGGTCC+TGG - chr6.1:34467457-34467476 None:intergenic 50.0%
!! AGCTCTGGAATTGTTGCACC+AGG + chr6.1:34467436-34467455 MS.gene60088:CDS 50.0%
CCCAAGTTGTGTGAGGCTCA+AGG + chr6.1:34467379-34467398 MS.gene60088:CDS 55.0%
CTGCAAATGCGCACGTGTCT+TGG - chr6.1:34466365-34466384 None:intergenic 55.0%
GGCAGTGATTAAAAGGGGCG+AGG + chr6.1:34466141-34466160 MS.gene60088:intron 55.0%
GGCAGTGATTAAAAGGGGCG+AGG - chr6.1:34466160-34466141 None:intergenic 55.0%
GGGATTGTTGGTGCAACTGG+AGG - chr6.1:34467532-34467551 None:intergenic 55.0%
GGTGGGATTGTTGGTGCAAC+TGG - chr6.1:34467535-34467554 None:intergenic 55.0%
GTGTACCTTCACCAGCAGCA+AGG - chr6.1:34466650-34466669 None:intergenic 55.0%
GCACCAGGACCGTTGCATTC+TGG + chr6.1:34467451-34467470 MS.gene60088:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 34464067 34467561 34464067 ID=MS.gene60088
chr6.1 mRNA 34464067 34467561 34464067 ID=MS.gene60088.t1;Parent=MS.gene60088
chr6.1 exon 34464067 34464142 34464067 ID=MS.gene60088.t1.exon1;Parent=MS.gene60088.t1
chr6.1 CDS 34464067 34464142 34464067 ID=cds.MS.gene60088.t1;Parent=MS.gene60088.t1
chr6.1 exon 34466337 34466663 34466337 ID=MS.gene60088.t1.exon2;Parent=MS.gene60088.t1
chr6.1 CDS 34466337 34466663 34466337 ID=cds.MS.gene60088.t1;Parent=MS.gene60088.t1
chr6.1 exon 34467368 34467561 34467368 ID=MS.gene60088.t1.exon3;Parent=MS.gene60088.t1
chr6.1 CDS 34467368 34467561 34467368 ID=cds.MS.gene60088.t1;Parent=MS.gene60088.t1
Gene Sequence

>MS.gene60088

ATGGCCCTTAACATTAGCATGAGAAATTTGGTCATAGTTGCCTTTGTATTTTTTGTTGCAGTGGAAGGAACTCTAGGTAAGTGATCTCTCAAAACCCATCATGATCTTAAACTTCATTTCTTAAGTTTATAAATTCATATTTCATAAAATAAGATAATTTTAGCCATTCATGTTAACCTAAATTAGTTAAGTTTTTTTGAACAAGTTAATTAGTTAAGTTATAATCAATTGTGCGATTGACATACAAGTTGTTAGACTTTCTGTATGAAATTCTACTCTTGCTATGAAATTTCGTCCTATCTTACATGGAGGTGTGTGTCTCTACTTTAAATACTTTCATATTAAAAAAAATGAATTCAATTTTAGTGAAGTTTTGAATTTAAATGCTGGAAATAGAAAATTGTATAACAGAGTAAGAGTTTTGAATTTTTAAAGTTTTGATGGTGATTTTTACCTTATTTGACTTGAATTAATTCATAGAAGTTGAGAATGACCTGTAGATAACTAAACTAGATAGTTTTGATGGTGATTTTCACCTTATTTTGATAGTTTTGATGGTGATTTTCACCTTATTTGATGGTGATTTTCACCTTATTTGACTTGAATTAATTCATAGAGGTTGAGAATGACTTCTAGATAACTAAACTTGGTCTCTATAAATAAGTCAACTTTTCGTTTTAGTCATTCTAAAATTTTTCTTCAACTTTTAGTCCCTTAAAAGTTTTCAATCTTCACTTTTGCTCCCTCTTTTAAAGTAAAATCATATGTAGAATTTATATTTTTGAATGAAATCATGCAGAAAAATTAATAATTTTATAAGAATCTCTTCAAAAAAAAAATAGAATTTTTTAATAAAATATGAATTTAATATGAATTTTTATATTTTTTAAGGTTAAAAATTCATATTTAATTTGTGTTATGTTAAAAAATTATAAATTTTTTTGGGATTTTTTTCTTACAATATTCTTCACATTTCTGCACAATTTCATTTAAAAATACAAAAATTAACTTAATAATAGGGAGCAAAAGTAGTGATTGAAAATTTTATAGGGACTAAAAGTTGAAGGAAAATTTTAGAGGGACTAAAACGAAAATTTGGTATATTTATAGGGATCAAAAACATATTTAATCCTTTCTTTTAATGGTTGATAGAAAAATTGAATTAGTAAGGCATAAAATCTGTCTCTAATTCTCTCATTAAGTTTAGTGGAAAAGTCAAATATGAATTTATATTTTCATCTTTAATTTTTGGTGTTAATTACTCCATCCAATCACATTTATAAGAAAATTTTGTTTTTTTCATGCTCATTGAACAACATATGTATCTGGACTATAATATACTCTATATACATCAGTTATTCTTAGTATAACTGAAAAAACAATTTTTTTTATAAATGTGACTGAGGAAGTTTTATTTTCTTAGTGTATATATCTGAAGATAAAGAAAACAAAATCAATATTTTTAAAAGGGTAAAATATGCTTTTCGTCCCTGTAATTAGGGGTCATTTGAATTTTCGTCCCTGAGCTTACTAATCCTCCCATCTTGTCCCTGTAATTCTTAATCATTTGAGATTTCGTCCCTCGCCCCTTTTAATCACTGCCACGTCAGCAAATTACCAAAATGGCATGGGAAATGACAAAAATACCCCTGACTTATTTTTTTTTCCTTAAAAAAAATTTCAAAATTTTGAAAATTCTTTTTTTAAATTAAAAAAATCTGAAAAAATAATTAAAAATCATAAAAAATTTCGGAAAAAAAATGTTAAAATTAAAACTGAAAAAACTAAAATTTTTCGGAGAAAAAACCGTAAAAAAAAATTCGGGAAAAAACTGGGAAAAAAAATTTTGTGAAAATTATTTTTTTTAAATTAAAATATCTGAAAAAATAATTAAAAAACATAAAAAATTTCGGAAAAAAAATGTTAAAATTAAAACTGAAAAAACTGAAATTTTTCGGAGAAAAAATCGTAAAAAAAAATTCGGGAAAAAGCTGGGAATAAAATTTTGAAGGAAAAAAAATAAGCCAGGGGTATTTTCGTCATTTCCCATGCCATTTTTGTAATTTGCTGACGTGGCAGTGATTAAAAGGGGCGAGGGACAAAATCTCAAATGATTAAGAATTACAGGGACAAGATGGGAGGATTAGTAAGCTCAGGGACGAAAATTCAAATGACCCCTAATTACAGGGACGAAAAGCATATTTTACCCTTTCTAAAATAATGGTTTTGTTCATATAGATCTCTAATATGTGGTGAAATTAATATTGCAGGAGGCATAGAATGTGAGAATTTGAACCAAGACACGTGCGCATTTGCAGTGTCATCTGCAGGAAAACGTTGTGTGCTTGAGAAGCATGTAAAGAGAAATGGTGAAGAAAAATATACATGTAGAACATCAGAGATTGAAGCTGATAAATTAAAGGACCATATTGAAAGTGACCAATGCATTAAGTCTTGTGGTTTGGACAGAAAATCCTTTGGAATATCATCTGATTCTCTTCTTGAATCTAGTTTCACAAAAAACCTTTGTTCTCCTCAGTGTTACAAAAGTTGTCCCAACATTGTTGATCTCTACTTCAACCTTGCTGCTGGTGAAGGTACACATATATTGAACAATATTAATAAAAGTTTTCTTTTTATACATCTTTGTAAAATTAATTTGTTGTATATACCATTGTAGTGAAAATTCCGACTTAAAACATAAAATTCATAATTTTGCAACTTTATTCACCTTCAATGACTCAAATTCATAGCAGAATCCCAAAACAAGCAAAATCCTAGTTAAATAGCATCAAAATCGTGAAATCCATACAAAATCGTAGAATTTTAAAGGATTTTAAAGGATTTTGTCCATTTTTTTTGTCATTTATAATACAAGTATTTTGTGGACTTTAAACTGGGTCATTTATGACTATACAATTTATTTATAACATATTTAGCATTACTTTTGTTTTAAGTCATTTATGTACATGTATTTTGTCGACTTTAAACTTGGTAATTTATGACTATATACGATTTACAACATATATTTAGCATTATTTTTGATTTGATAGAATCCATCGATTTTGATTGCGATTTTACGAATTTCGATTTTGCTCCTCCCTTTAGACGTGAAGCAAAATCTCGATTTTAAAAACTTGGTATATACCATCATTATCTTCATGAATTATAATTTTACATATTTTAATTGTTAAATAAGATCAAAGCCTTTATATTAATTTGAATCAAATGATGCTTAAATTTCTCAATCTTGATTTGCATTACAAAAAAACATATTGAATTTTCTTTTAATTATGTATAGGTGTGTTTCTTCCCAAGTTGTGTGAGGCTCAAGGTGCTAATGCTCGTCGAGAAATGGCTGAGATCAAAAGCTCTGGAATTGTTGCACCAGGACCGTTGCATTCTGGAAAGTTCATTGCTACATCTCCAGAATCCTCTGAAGCCATGAAACTCACAGTTGAACCTCCAGTTGCACCAACAATCCCACCATTCTAA
Protein sequence

>MS.gene60088.t1

MALNISMRNLVIVAFVFFVAVEGTLGGIECENLNQDTCAFAVSSAGKRCVLEKHVKRNGEEKYTCRTSEIEADKLKDHIESDQCIKSCGLDRKSFGISSDSLLESSFTKNLCSPQCYKSCPNIVDLYFNLAAGEGVFLPKLCEAQGANARREMAEIKSSGIVAPGPLHSGKFIATSPESSEAMKLTVEPPVAPTIPPF