AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60364


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60364.t1 MTR_4g106900 96.131 672 26 0 1 672 1 672 0.0 1315
MS.gene60364.t1 MTR_3g077950 61.609 758 197 9 1 668 1 754 0.0 873
MS.gene60364.t1 MTR_3g077950 61.162 757 202 9 1 668 29 782 0.0 863
MS.gene60364.t1 MTR_6g007110 56.772 694 270 8 1 670 1 688 0.0 734
MS.gene60364.t1 MTR_8g099745 62.970 505 186 1 167 670 65 569 0.0 671
MS.gene60364.t1 MTR_6g007110 55.433 635 254 7 1 612 1 629 0.0 658
MS.gene60364.t1 MTR_8g027385 61.508 504 192 1 167 670 52 553 0.0 646
MS.gene60364.t1 MTR_1g070145 26.069 491 351 5 167 652 91 574 1.38e-42 163
MS.gene60364.t1 MTR_2g023050 69.231 91 27 1 581 670 3 93 6.84e-34 126
MS.gene60364.t1 MTR_6g006830 57.143 49 21 0 404 452 19 67 1.52e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60364.t1 AT1G27500 57.210 638 245 6 42 668 31 651 0.0 718
MS.gene60364.t1 AT1G27500 57.210 638 245 6 42 668 20 640 0.0 718
MS.gene60364.t1 AT3G27960 54.824 653 264 9 30 670 19 652 0.0 688
MS.gene60364.t1 AT3G27960 54.824 653 264 9 30 670 19 652 0.0 688
MS.gene60364.t1 AT4G10840 55.726 585 234 5 104 670 12 589 0.0 652
MS.gene60364.t1 AT3G27960 54.530 596 238 10 30 612 19 594 0.0 624
MS.gene60364.t1 AT4G10840 55.408 527 210 5 104 612 12 531 0.0 586
MS.gene60364.t1 AT2G31240 26.877 506 357 6 161 659 103 602 3.59e-42 162

Find 135 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATACCCCAAGAGTTTC+AGG 0.177813 8.2:-19306628 None:intergenic
TCAATTATGTGTTACAATAA+TGG 0.193081 8.2:+19305692 MS.gene60364:CDS
CCCTTAGCTCTTGATATTGA+TGG 0.198930 8.2:-19305173 None:intergenic
TCATTTGTTCTCCACTAATA+TGG 0.215795 8.2:-19305085 None:intergenic
TCGATCGATCGCTCTAAAAT+TGG 0.218648 8.2:-19305569 None:intergenic
CAGACGCCACTTCCACTTCT+TGG 0.232398 8.2:-19305991 None:intergenic
CTTGATATTCATAGAGAAAA+TGG 0.235706 8.2:+19305842 MS.gene60364:CDS
CAATTATGTGTTACAATAAT+GGG 0.276825 8.2:+19305693 MS.gene60364:CDS
CTTCCAATAGAAGCATTCTT+AGG 0.278099 8.2:-19305290 None:intergenic
TGAAGAAGCAAAGATTGTTT+TGG 0.282341 8.2:+19306582 MS.gene60364:CDS
GGAAGTACAAAGAAAGGTTT+TGG 0.283596 8.2:+19305718 MS.gene60364:CDS
GGACGATGCAATTGATATTA+TGG 0.285210 8.2:+19307041 MS.gene60364:CDS
ATTTCGCAATTGCCTGTTGC+TGG 0.305472 8.2:-19305613 None:intergenic
TGTGGGCTCAATGGTATTCT+TGG 0.312525 8.2:-19304939 None:intergenic
TGCAGCAATATATTGCAGTT+TGG 0.316706 8.2:+19305526 MS.gene60364:CDS
AAGTCGAGTCGACGATTCTA+AGG 0.334895 8.2:+19305325 MS.gene60364:CDS
TGCAAATGGGAAACCGAGTT+TGG 0.341154 8.2:+19305478 MS.gene60364:CDS
TTTATTATATATGTTCTTAG+AGG 0.341743 8.2:-19304907 None:intergenic
GCAAGGGATTTGATTTCATT+AGG 0.353869 8.2:+19305395 MS.gene60364:CDS
AAACCTAAGAATGCTTCTAT+TGG 0.361701 8.2:+19305287 MS.gene60364:CDS
GCAGCAATATATTGCAGTTT+GGG 0.364615 8.2:+19305527 MS.gene60364:CDS
TCAGAATTTAGCCATATTAG+TGG 0.370582 8.2:+19305074 MS.gene60364:CDS
GCAATTGTGTTCTGTTGGCC+AGG 0.374516 8.2:-19306364 None:intergenic
GAAGTATTGTTGAAGGAAAC+AGG 0.377018 8.2:+19307138 MS.gene60364:CDS
TTTCCATTCTTCCTTTCAAC+AGG 0.377860 8.2:-19305218 None:intergenic
TGCAGGAATTGAAGCTCAAA+TGG 0.381007 8.2:+19306384 MS.gene60364:CDS
TGGATCGGTCTTTGTACGTT+TGG 0.386436 8.2:+19306132 MS.gene60364:CDS
CTTATCACCCTGAAACTCTT+GGG 0.395524 8.2:+19306620 MS.gene60364:CDS
CGTCGTATCGAGCCAATGAT+AGG 0.402619 8.2:-19306039 None:intergenic
GGAGATAGTGAAAGAGGAAA+TGG 0.406354 8.2:+19305115 MS.gene60364:CDS
CAAGAGTTGGTGAAACTTGT+AGG 0.412109 8.2:+19305753 MS.gene60364:CDS
CCTTATCACCCTGAAACTCT+TGG 0.414921 8.2:+19306619 MS.gene60364:CDS
TGGAGACACATTCCTATCAT+TGG 0.416505 8.2:+19306027 MS.gene60364:CDS
CCAGGTATTGTTCCAATTGA+AGG 0.416547 8.2:+19304852 MS.gene60364:CDS
CCTTCAATTGGAACAATACC+TGG 0.419676 8.2:-19304852 None:intergenic
TTGTTTGAGAATTCTGCAAA+TGG 0.422693 8.2:+19305464 MS.gene60364:CDS
GGCCAACAGAACACAATTGC+AGG 0.427612 8.2:+19306367 MS.gene60364:CDS
GGTCTTATATGTGAAACTAA+TGG 0.429270 8.2:+19305908 MS.gene60364:CDS
TGCTGGCCTTCCTCAACAAC+AGG 0.431904 8.2:-19305596 None:intergenic
TTGAAGAGGCAGCGGATAGA+AGG 0.431980 8.2:+19305879 MS.gene60364:CDS
CTACAAGTTTCACCAACTCT+TGG 0.433233 8.2:-19305752 None:intergenic
ATAATAGAACATGGAAGGTA+AGG 0.438944 8.2:+19306164 MS.gene60364:CDS
CCTCCTGTTGAAAGGAAGAA+TGG 0.443940 8.2:+19305215 MS.gene60364:CDS
GCTTTGGATCTGATAGTGAT+TGG 0.453900 8.2:+19305039 MS.gene60364:CDS
TGGGAAACCGAGTTTGGATC+TGG 0.455266 8.2:+19305484 MS.gene60364:CDS
GCAGGAATTGAAGCTCAAAT+GGG 0.456824 8.2:+19306385 MS.gene60364:CDS
GGGGTATATAGCAATCTTGC+TGG 0.456842 8.2:+19306640 MS.gene60364:CDS
GTCTCAAAGCTTCGAGCTAC+GGG 0.458234 8.2:+19306466 MS.gene60364:CDS
TTAGGTGTTTGTGGGCTCAA+TGG 0.458935 8.2:-19304948 None:intergenic
TGAAGGAAACAGGCAGAGTT+CGG 0.462163 8.2:+19307148 MS.gene60364:CDS
TTCTGAAGGAACACCAGGCA+TGG 0.463225 8.2:-19306233 None:intergenic
ACACGCTCAAGTCAAAGCTT+TGG 0.469749 8.2:+19305023 MS.gene60364:CDS
CCAAGAGTTTCAGGGTGATA+AGG 0.470788 8.2:-19306619 None:intergenic
GAAGATGGAGATAGTGAAAG+AGG 0.472563 8.2:+19305109 MS.gene60364:CDS
TGGAGAACAAATGAGGAAGA+TGG 0.477057 8.2:+19305094 MS.gene60364:CDS
CCATTCTTCCTTTCAACAGG+AGG 0.477650 8.2:-19305215 None:intergenic
ATCTATGAAAATCCCATGCC+TGG 0.478630 8.2:+19306220 MS.gene60364:CDS
ATCTCTTCTGAAGGAACACC+AGG 0.478756 8.2:-19306238 None:intergenic
AAGCATTGTAAGATTCAGTC+TGG 0.479901 8.2:-19306432 None:intergenic
TGGGTTGGAAGTACAAAGAA+AGG 0.481648 8.2:+19305712 MS.gene60364:CDS
GGCAGCGGATAGAAGGTTGA+TGG 0.481673 8.2:+19305886 MS.gene60364:CDS
ACATTTGATAATCCTGAGCT+TGG 0.484852 8.2:+19305353 MS.gene60364:CDS
TGTTGAGGAAGGCCAGCAAC+AGG 0.489903 8.2:+19305601 MS.gene60364:CDS
TGTTGATGAGAAGAGAAGGT+TGG 0.493492 8.2:+19307116 MS.gene60364:CDS
GATTCTTCTTGATGTTAATG+AGG 0.494164 8.2:+19307194 MS.gene60364:CDS
AAGGTTGGAAGTATTGTTGA+AGG 0.494395 8.2:+19307131 MS.gene60364:CDS
TTCGCCAGTCACATGCAACT+TGG 0.495995 8.2:+19305635 MS.gene60364:CDS
ACCATCAATATCAAGAGCTA+AGG 0.498141 8.2:+19305172 MS.gene60364:CDS
GGGGTCATATACTATGTGTT+GGG 0.499466 8.2:+19306406 MS.gene60364:CDS
CAATTGTGTTCTGTTGGCCA+GGG 0.500673 8.2:-19306363 None:intergenic
TGTTTGAGAATTCTGCAAAT+GGG 0.502518 8.2:+19305465 MS.gene60364:CDS
GTCTCCAAGTTGCATGTGAC+TGG 0.503224 8.2:-19305639 None:intergenic
TTCCTGCAATTGTGTTCTGT+TGG 0.509608 8.2:-19306369 None:intergenic
CAGTTTGGGTCATTATAATG+AGG 0.510429 8.2:+19305541 MS.gene60364:CDS
TGGAAATCATGAAGCAGCAT+TGG 0.513854 8.2:+19305928 MS.gene60364:CDS
GGAGTACATTGTAGTTGTGA+GGG 0.517613 8.2:+19307062 MS.gene60364:CDS
AGCATGGCAATGGTATCAAA+TGG 0.519611 8.2:+19305968 MS.gene60364:CDS
CGCTGCCTCTTCAAGAGAAG+AGG 0.524252 8.2:-19305870 None:intergenic
GCTGGCACATATGATGCAAT+TGG 0.526112 8.2:+19306658 MS.gene60364:CDS
TATATACCCCAAGAGTTTCA+GGG 0.526906 8.2:-19306627 None:intergenic
CTCTTCTCTTGAAGAGGCAG+CGG 0.529044 8.2:+19305871 MS.gene60364:CDS
TCGATACGACGAGGCCATCT+TGG 0.530389 8.2:+19306051 MS.gene60364:CDS
TGTCTCAAAGCTTCGAGCTA+CGG 0.531527 8.2:+19306465 MS.gene60364:CDS
GATCGAAATTCCTGTTGTTG+AGG 0.532523 8.2:+19305586 MS.gene60364:CDS
GCGTCTGTTGATTGCAGCAT+TGG 0.533117 8.2:+19306007 MS.gene60364:CDS
CAAAGGAGGGAATCATCCTT+CGG 0.536771 8.2:+19306108 MS.gene60364:CDS
CTTCAAAACCTCCTGTTGAA+AGG 0.539003 8.2:+19305207 MS.gene60364:CDS
TCTGAAGGAACACCAGGCAT+GGG 0.540367 8.2:-19306232 None:intergenic
ATATGTTCTTAGAGGGTGAA+GGG 0.542261 8.2:-19304899 None:intergenic
AAGAAGAATCTCAAGTGACT+TGG 0.543515 8.2:-19307181 None:intergenic
TTCACCCTCTTCTCTTGAAG+AGG 0.545965 8.2:+19305865 MS.gene60364:CDS
TAATAGAACATGGAAGGTAA+GGG 0.546637 8.2:+19306165 MS.gene60364:CDS
ATGCTTCTATTGGAAGATCA+AGG 0.547710 8.2:+19305297 MS.gene60364:CDS
GAATCATCCTTCGGTTGGAT+CGG 0.550035 8.2:+19306117 MS.gene60364:CDS
GGAGTAACTGATCCAAGAGT+TGG 0.552445 8.2:+19305740 MS.gene60364:CDS
TATATGTTCTTAGAGGGTGA+AGG 0.553039 8.2:-19304900 None:intergenic
GGAGGGAATCATCCTTCGGT+TGG 0.553087 8.2:+19306112 MS.gene60364:CDS
GGAGACACTTATGCTATGCT+AGG 0.554877 8.2:+19305656 MS.gene60364:CDS
CCATCAATATCAAGAGCTAA+GGG 0.557668 8.2:+19305173 MS.gene60364:CDS
CCTAGGAAATCAAAGATGCC+AGG 0.558189 8.2:+19304834 None:intergenic
TGGAGTACATTGTAGTTGTG+AGG 0.562184 8.2:+19307061 MS.gene60364:CDS
AAATGGCCAAGAAGTGGAAG+TGG 0.564594 8.2:+19305985 MS.gene60364:CDS
TTATTATATATGTTCTTAGA+GGG 0.565518 8.2:-19304906 None:intergenic
GCACATATGATGCAATTGGC+AGG 0.565574 8.2:+19306662 MS.gene60364:CDS
ACATAATTGAATTCTCAAGT+TGG 0.568682 8.2:-19305679 None:intergenic
TATGTGTTACAATAATGGGT+TGG 0.569715 8.2:+19305697 MS.gene60364:CDS
GAAATTCCTGTTGTTGAGGA+AGG 0.573452 8.2:+19305590 MS.gene60364:CDS
CTGAGTTGTATAATAGAACA+TGG 0.575405 8.2:+19306155 MS.gene60364:CDS
GGTATCAAATGGCCAAGAAG+TGG 0.579507 8.2:+19305979 MS.gene60364:CDS
TAATTTGACAGCCTCGCTCA+AGG 0.580135 8.2:-19306557 None:intergenic
CCACTAGCAATCTCTTCTGA+AGG 0.584600 8.2:-19306247 None:intergenic
CACATAACCAGATCCAAACT+CGG 0.593249 8.2:-19305491 None:intergenic
GATAACTCGAGAGCTTTCCT+CGG 0.595321 8.2:-19305425 None:intergenic
GTTGTATAATAGAACATGGA+AGG 0.597870 8.2:+19306159 MS.gene60364:CDS
GCAGCGGATAGAAGGTTGAT+GGG 0.602788 8.2:+19305887 MS.gene60364:CDS
GAGATACATAATGATGCCCC+TGG 0.603731 8.2:+19306346 MS.gene60364:CDS
GCTGCCTCTTCAAGAGAAGA+GGG 0.607015 8.2:-19305869 None:intergenic
ATGTTGTTGATGAGAAGAGA+AGG 0.609538 8.2:+19307112 MS.gene60364:CDS
TTTCATTAGGAGAGAATCCG+AGG 0.611050 8.2:+19305408 MS.gene60364:CDS
CAGGAATTGAAGCTCAAATG+GGG 0.612615 8.2:+19306386 MS.gene60364:CDS
GTACATTGTAGTTGTGAGGG+AGG 0.615028 8.2:+19307065 MS.gene60364:CDS
CCTTCAGAAGAGATTGCTAG+TGG 0.615589 8.2:+19306247 MS.gene60364:CDS
AAACACCTAAAAGTGTTGAG+AGG 0.620977 8.2:+19304961 MS.gene60364:CDS
TTATCACCCTGAAACTCTTG+GGG 0.630860 8.2:+19306621 MS.gene60364:CDS
TTGCCATGCTTGCTAAAACA+AGG 0.632268 8.2:-19305955 None:intergenic
CATTAAGTTGCACACAACAA+AGG 0.635240 8.2:-19306534 None:intergenic
TGCAATTTGACGAGGCAGAG+AGG 0.636429 8.2:+19305804 MS.gene60364:CDS
ATATTAGTGGAGAACAAATG+AGG 0.636511 8.2:+19305087 MS.gene60364:CDS
AATTGTGTTCTGTTGGCCAG+GGG 0.640099 8.2:-19306362 None:intergenic
AGCACTCGAGTTACTGCACA+AGG 0.644367 8.2:+19306318 MS.gene60364:CDS
ACAAAGACCGATCCAACCGA+AGG 0.663368 8.2:-19306124 None:intergenic
TCAAGCATTGCAATTTGACG+AGG 0.663887 8.2:+19305796 MS.gene60364:CDS
GCAACTTAATGCCTTGAGCG+AGG 0.674178 8.2:+19306546 MS.gene60364:CDS
AGGAATTGAAGCTCAAATGG+GGG 0.710252 8.2:+19306387 MS.gene60364:CDS
ATCATTGGCTCGATACGACG+AGG 0.712130 8.2:+19306042 MS.gene60364:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATATGTTCTTAGA+GGG - chr8.2:19304909-19304928 None:intergenic 15.0%
!! TTTATTATATATGTTCTTAG+AGG - chr8.2:19304910-19304929 None:intergenic 15.0%
!!! ATTTTTATTAAAGAAAGCAA+GGG + chr8.2:19305379-19305398 MS.gene60364:CDS 15.0%
!! CAATTATGTGTTACAATAAT+GGG + chr8.2:19305693-19305712 MS.gene60364:CDS 20.0%
!! CTTGCTTTCTTTAATAAAAA+TGG - chr8.2:19305380-19305399 None:intergenic 20.0%
!! TCAATTATGTGTTACAATAA+TGG + chr8.2:19305692-19305711 MS.gene60364:CDS 20.0%
!!! ATACTAATTTTGAACATTAG+TGG - chr8.2:19306867-19306886 None:intergenic 20.0%
!!! ATGGTTTTTGAGATTTATAT+AGG + chr8.2:19306944-19306963 MS.gene60364:intron 20.0%
!!! CATTTTTATTAAAGAAAGCA+AGG + chr8.2:19305378-19305397 MS.gene60364:CDS 20.0%
!!! TTCATTTTATTTCCTTCAAT+TGG - chr8.2:19304867-19304886 None:intergenic 20.0%
! ACATAATTGAATTCTCAAGT+TGG - chr8.2:19305682-19305701 None:intergenic 25.0%
! ACTAGATCTAATAATCAAGT+AGG + chr8.2:19306840-19306859 MS.gene60364:intron 25.0%
! CTAGATCTAATAATCAAGTA+GGG + chr8.2:19306841-19306860 MS.gene60364:intron 25.0%
! CTTGATATTCATAGAGAAAA+TGG + chr8.2:19305842-19305861 MS.gene60364:CDS 25.0%
! TAATACTTGCAAACAAACAT+GGG - chr8.2:19306729-19306748 None:intergenic 25.0%
!!! GGTTTTGTTCTTAATCAAAT+GGG + chr8.2:19306511-19306530 MS.gene60364:CDS 25.0%
!!! TACTATGATATGCTATTTCA+GGG + chr8.2:19307017-19307036 MS.gene60364:intron 25.0%
!!! TGGTTTTGTTCTTAATCAAA+TGG + chr8.2:19306510-19306529 MS.gene60364:CDS 25.0%
AAACCTAAGAATGCTTCTAT+TGG + chr8.2:19305287-19305306 MS.gene60364:CDS 30.0%
AAACTACATACCATATACTG+TGG - chr8.2:19306916-19306935 None:intergenic 30.0%
AAATGGTGAAAAAGATACTG+AGG + chr8.2:19305132-19305151 MS.gene60364:CDS 30.0%
AACTACATACCATATACTGT+GGG - chr8.2:19306915-19306934 None:intergenic 30.0%
AATGCCTCAATATCATGAAA+GGG - chr8.2:19306775-19306794 None:intergenic 30.0%
AATGGTGAAAAAGATACTGA+GGG + chr8.2:19305133-19305152 MS.gene60364:CDS 30.0%
ATAATAGAACATGGAAGGTA+AGG + chr8.2:19306164-19306183 MS.gene60364:CDS 30.0%
ATATTAGTGGAGAACAAATG+AGG + chr8.2:19305087-19305106 MS.gene60364:CDS 30.0%
CTGAGTTGTATAATAGAACA+TGG + chr8.2:19306155-19306174 MS.gene60364:CDS 30.0%
GATTCTTCTTGATGTTAATG+AGG + chr8.2:19307194-19307213 MS.gene60364:CDS 30.0%
GTAATACTTGCAAACAAACA+TGG - chr8.2:19306730-19306749 None:intergenic 30.0%
GTTGTATAATAGAACATGGA+AGG + chr8.2:19306159-19306178 MS.gene60364:CDS 30.0%
TAATAGAACATGGAAGGTAA+GGG + chr8.2:19306165-19306184 MS.gene60364:CDS 30.0%
TAATGCCTCAATATCATGAA+AGG - chr8.2:19306776-19306795 None:intergenic 30.0%
TCAGAATTTAGCCATATTAG+TGG + chr8.2:19305074-19305093 MS.gene60364:CDS 30.0%
TCATTTGTTCTCCACTAATA+TGG - chr8.2:19305088-19305107 None:intergenic 30.0%
TGTTTGAGAATTCTGCAAAT+GGG + chr8.2:19305465-19305484 MS.gene60364:CDS 30.0%
TTGTTTGAGAATTCTGCAAA+TGG + chr8.2:19305464-19305483 MS.gene60364:CDS 30.0%
! GAAGTACAAAGAAAGGTTTT+GGG + chr8.2:19305719-19305738 MS.gene60364:CDS 30.0%
! GGTCTTATATGTGAAACTAA+TGG + chr8.2:19305908-19305927 MS.gene60364:CDS 30.0%
! TGAAGAAGCAAAGATTGTTT+TGG + chr8.2:19306582-19306601 MS.gene60364:CDS 30.0%
!! CAAATAACTATAGCTTGCTT+TGG - chr8.2:19306800-19306819 None:intergenic 30.0%
!! GTACTATGATATGCTATTTC+AGG + chr8.2:19307016-19307035 MS.gene60364:intron 30.0%
!! TATGTGTTACAATAATGGGT+TGG + chr8.2:19305697-19305716 MS.gene60364:CDS 30.0%
!!! ATTGTTTTGGAACAAGAGTA+CGG + chr8.2:19306595-19306614 MS.gene60364:CDS 30.0%
!!! GTTGTACTTTGTTTTCTCAA+AGG - chr8.2:19305248-19305267 None:intergenic 30.0%
AAGAAGAATCTCAAGTGACT+TGG - chr8.2:19307184-19307203 None:intergenic 35.0%
AATAAAAATGGTCCAAGCTC+AGG - chr8.2:19305368-19305387 None:intergenic 35.0%
ACCATCAATATCAAGAGCTA+AGG + chr8.2:19305172-19305191 MS.gene60364:CDS 35.0%
ATAAACCAACCCACAGTATA+TGG + chr8.2:19306903-19306922 MS.gene60364:intron 35.0%
ATATGTTCTTAGAGGGTGAA+GGG - chr8.2:19304902-19304921 None:intergenic 35.0%
ATGCCTCAATATCATGAAAG+GGG - chr8.2:19306774-19306793 None:intergenic 35.0%
ATGCTTCTATTGGAAGATCA+AGG + chr8.2:19305297-19305316 MS.gene60364:CDS 35.0%
CAGTTTGGGTCATTATAATG+AGG + chr8.2:19305541-19305560 MS.gene60364:CDS 35.0%
CCATCAATATCAAGAGCTAA+GGG + chr8.2:19305173-19305192 MS.gene60364:CDS 35.0%
GCAGCAATATATTGCAGTTT+GGG + chr8.2:19305527-19305546 MS.gene60364:CDS 35.0%
GGACGATGCAATTGATATTA+TGG + chr8.2:19307041-19307060 MS.gene60364:CDS 35.0%
GTATGTAGTTTCTTGCTTCA+TGG + chr8.2:19306925-19306944 MS.gene60364:intron 35.0%
TATATACCCCAAGAGTTTCA+GGG - chr8.2:19306630-19306649 None:intergenic 35.0%
TATATGTTCTTAGAGGGTGA+AGG - chr8.2:19304903-19304922 None:intergenic 35.0%
TGCAGCAATATATTGCAGTT+TGG + chr8.2:19305526-19305545 MS.gene60364:CDS 35.0%
TTTCCATTCTTCCTTTCAAC+AGG - chr8.2:19305221-19305240 None:intergenic 35.0%
! AAGCATTGTAAGATTCAGTC+TGG - chr8.2:19306435-19306454 None:intergenic 35.0%
! ACATTTGATAATCCTGAGCT+TGG + chr8.2:19305353-19305372 MS.gene60364:CDS 35.0%
! ATGTTGTTGATGAGAAGAGA+AGG + chr8.2:19307112-19307131 MS.gene60364:CDS 35.0%
! CATTAAGTTGCACACAACAA+AGG - chr8.2:19306537-19306556 None:intergenic 35.0%
! GAGAAAAAATCGGCTTTCTT+TGG + chr8.2:19306490-19306509 MS.gene60364:CDS 35.0%
! GCAAGGGATTTGATTTCATT+AGG + chr8.2:19305395-19305414 MS.gene60364:CDS 35.0%
! TGAAACCTCTCAACACTTTT+AGG - chr8.2:19304969-19304988 None:intergenic 35.0%
!! AAACACCTAAAAGTGTTGAG+AGG + chr8.2:19304961-19304980 MS.gene60364:CDS 35.0%
!! AAGGTTGGAAGTATTGTTGA+AGG + chr8.2:19307131-19307150 MS.gene60364:CDS 35.0%
!! CAACACTTTTAGGTGTTTGT+GGG - chr8.2:19304959-19304978 None:intergenic 35.0%
!! CTTCCAATAGAAGCATTCTT+AGG - chr8.2:19305293-19305312 None:intergenic 35.0%
!! GAAGTATTGTTGAAGGAAAC+AGG + chr8.2:19307138-19307157 MS.gene60364:CDS 35.0%
!! GGAAGTACAAAGAAAGGTTT+TGG + chr8.2:19305718-19305737 MS.gene60364:CDS 35.0%
!! TATGATATGCTATTTCAGGG+TGG + chr8.2:19307020-19307039 MS.gene60364:intron 35.0%
!! TCAACACTTTTAGGTGTTTG+TGG - chr8.2:19304960-19304979 None:intergenic 35.0%
!! TTTTCAAGACTCACAAAGGA+GGG + chr8.2:19306095-19306114 MS.gene60364:CDS 35.0%
ACATACCATATACTGTGGGT+TGG - chr8.2:19306911-19306930 None:intergenic 40.0%
AGCATGGCAATGGTATCAAA+TGG + chr8.2:19305968-19305987 MS.gene60364:CDS 40.0%
AGCTACGGGAGAGAAAAAAT+CGG + chr8.2:19306480-19306499 MS.gene60364:CDS 40.0%
AGGAATTGAAGCTCAAATGG+GGG + chr8.2:19306387-19306406 MS.gene60364:CDS 40.0%
ATCTATGAAAATCCCATGCC+TGG + chr8.2:19306220-19306239 MS.gene60364:CDS 40.0%
CACATAACCAGATCCAAACT+CGG - chr8.2:19305494-19305513 None:intergenic 40.0%
CAGGAATTGAAGCTCAAATG+GGG + chr8.2:19306386-19306405 MS.gene60364:CDS 40.0%
CCTTCAATTGGAACAATACC+TGG - chr8.2:19304855-19304874 None:intergenic 40.0%
CTACAAGTTTCACCAACTCT+TGG - chr8.2:19305755-19305774 None:intergenic 40.0%
CTATATACCCCAAGAGTTTC+AGG - chr8.2:19306631-19306650 None:intergenic 40.0%
CTTATCACCCTGAAACTCTT+GGG + chr8.2:19306620-19306639 MS.gene60364:CDS 40.0%
CTTCAAAACCTCCTGTTGAA+AGG + chr8.2:19305207-19305226 MS.gene60364:CDS 40.0%
GAAATTCCTGTTGTTGAGGA+AGG + chr8.2:19305590-19305609 MS.gene60364:CDS 40.0%
GAAGATGGAGATAGTGAAAG+AGG + chr8.2:19305109-19305128 MS.gene60364:CDS 40.0%
GATCGAAATTCCTGTTGTTG+AGG + chr8.2:19305586-19305605 MS.gene60364:CDS 40.0%
GCAGGAATTGAAGCTCAAAT+GGG + chr8.2:19306385-19306404 MS.gene60364:CDS 40.0%
GGAGATAGTGAAAGAGGAAA+TGG + chr8.2:19305115-19305134 MS.gene60364:CDS 40.0%
GGAGTACATTGTAGTTGTGA+GGG + chr8.2:19307062-19307081 MS.gene60364:CDS 40.0%
GGGGTCATATACTATGTGTT+GGG + chr8.2:19306406-19306425 MS.gene60364:CDS 40.0%
TGCAGGAATTGAAGCTCAAA+TGG + chr8.2:19306384-19306403 MS.gene60364:CDS 40.0%
TGGAAATCATGAAGCAGCAT+TGG + chr8.2:19305928-19305947 MS.gene60364:CDS 40.0%
TGGAGAACAAATGAGGAAGA+TGG + chr8.2:19305094-19305113 MS.gene60364:CDS 40.0%
TGGAGACACATTCCTATCAT+TGG + chr8.2:19306027-19306046 MS.gene60364:CDS 40.0%
TGGAGTACATTGTAGTTGTG+AGG + chr8.2:19307061-19307080 MS.gene60364:CDS 40.0%
TTATCACCCTGAAACTCTTG+GGG + chr8.2:19306621-19306640 MS.gene60364:CDS 40.0%
TTCCTGCAATTGTGTTCTGT+TGG - chr8.2:19306372-19306391 None:intergenic 40.0%
TTGTGAGGGAGGAAAAACTT+GGG + chr8.2:19307076-19307095 MS.gene60364:CDS 40.0%
TTTCATTAGGAGAGAATCCG+AGG + chr8.2:19305408-19305427 MS.gene60364:CDS 40.0%
! CCAGGTATTGTTCCAATTGA+AGG + chr8.2:19304852-19304871 MS.gene60364:CDS 40.0%
! CCCTTAGCTCTTGATATTGA+TGG - chr8.2:19305176-19305195 None:intergenic 40.0%
! GCTTTGGATCTGATAGTGAT+TGG + chr8.2:19305039-19305058 MS.gene60364:CDS 40.0%
! TCAAGCATTGCAATTTGACG+AGG + chr8.2:19305796-19305815 MS.gene60364:CDS 40.0%
! TGGGTTGGAAGTACAAAGAA+AGG + chr8.2:19305712-19305731 MS.gene60364:CDS 40.0%
! TGTTGATGAGAAGAGAAGGT+TGG + chr8.2:19307116-19307135 MS.gene60364:CDS 40.0%
! TTGCCATGCTTGCTAAAACA+AGG - chr8.2:19305958-19305977 None:intergenic 40.0%
!! CAAGAGTTGGTGAAACTTGT+AGG + chr8.2:19305753-19305772 MS.gene60364:CDS 40.0%
!! CTTTCAACAGGAGGTTTTGA+AGG - chr8.2:19305209-19305228 None:intergenic 40.0%
!! GGCGTATAAAAAAGCGTTAG+CGG + chr8.2:19306072-19306091 MS.gene60364:CDS 40.0%
!! GTTTTCAAGACTCACAAAGG+AGG + chr8.2:19306094-19306113 MS.gene60364:CDS 40.0%
!! TCGATCGATCGCTCTAAAAT+TGG - chr8.2:19305572-19305591 None:intergenic 40.0%
!!! CGCTTTTTTATACGCCAAGA+TGG - chr8.2:19306068-19306087 None:intergenic 40.0%
!!! TGTTTTAGCAAGCATGGCAA+TGG + chr8.2:19305958-19305977 MS.gene60364:CDS 40.0%
AAATGGCCAAGAAGTGGAAG+TGG + chr8.2:19305985-19306004 MS.gene60364:CDS 45.0%
AAGTCGAGTCGACGATTCTA+AGG + chr8.2:19305325-19305344 MS.gene60364:CDS 45.0%
AATTGTGTTCTGTTGGCCAG+GGG - chr8.2:19306365-19306384 None:intergenic 45.0%
ACACGCTCAAGTCAAAGCTT+TGG + chr8.2:19305023-19305042 MS.gene60364:CDS 45.0%
ATTTCGCAATTGCCTGTTGC+TGG - chr8.2:19305616-19305635 None:intergenic 45.0%
CAAAGGAGGGAATCATCCTT+CGG + chr8.2:19306108-19306127 MS.gene60364:CDS 45.0%
CAATTGTGTTCTGTTGGCCA+GGG - chr8.2:19306366-19306385 None:intergenic 45.0%
CCAAGAGTTTCAGGGTGATA+AGG - chr8.2:19306622-19306641 None:intergenic 45.0%
CCACTAGCAATCTCTTCTGA+AGG - chr8.2:19306250-19306269 None:intergenic 45.0%
CCATTCTTCCTTTCAACAGG+AGG - chr8.2:19305218-19305237 None:intergenic 45.0%
CCTCCTGTTGAAAGGAAGAA+TGG + chr8.2:19305215-19305234 MS.gene60364:CDS 45.0%
CCTTATCACCCTGAAACTCT+TGG + chr8.2:19306619-19306638 MS.gene60364:CDS 45.0%
CCTTCAGAAGAGATTGCTAG+TGG + chr8.2:19306247-19306266 MS.gene60364:CDS 45.0%
GAATCATCCTTCGGTTGGAT+CGG + chr8.2:19306117-19306136 MS.gene60364:CDS 45.0%
GAGATACATAATGATGCCCC+TGG + chr8.2:19306346-19306365 MS.gene60364:CDS 45.0%
GATAACTCGAGAGCTTTCCT+CGG - chr8.2:19305428-19305447 None:intergenic 45.0%
GCACATATGATGCAATTGGC+AGG + chr8.2:19306662-19306681 MS.gene60364:CDS 45.0%
GCACCCCTTTCATGATATTG+AGG + chr8.2:19306768-19306787 MS.gene60364:intron 45.0%
GCTGGCACATATGATGCAAT+TGG + chr8.2:19306658-19306677 MS.gene60364:CDS 45.0%
GGAGACACTTATGCTATGCT+AGG + chr8.2:19305656-19305675 MS.gene60364:CDS 45.0%
GGAGTAACTGATCCAAGAGT+TGG + chr8.2:19305740-19305759 MS.gene60364:CDS 45.0%
GGGGGTCATATACTATGTGT+TGG + chr8.2:19306405-19306424 MS.gene60364:CDS 45.0%
GGGGTATATAGCAATCTTGC+TGG + chr8.2:19306640-19306659 MS.gene60364:CDS 45.0%
GGTATCAAATGGCCAAGAAG+TGG + chr8.2:19305979-19305998 MS.gene60364:CDS 45.0%
GTACATTGTAGTTGTGAGGG+AGG + chr8.2:19307065-19307084 MS.gene60364:CDS 45.0%
GTTGTGAGGGAGGAAAAACT+TGG + chr8.2:19307075-19307094 MS.gene60364:CDS 45.0%
TAATTTGACAGCCTCGCTCA+AGG - chr8.2:19306560-19306579 None:intergenic 45.0%
TGAAGGAAACAGGCAGAGTT+CGG + chr8.2:19307148-19307167 MS.gene60364:CDS 45.0%
TGCAAATGGGAAACCGAGTT+TGG + chr8.2:19305478-19305497 MS.gene60364:CDS 45.0%
TGGATCGGTCTTTGTACGTT+TGG + chr8.2:19306132-19306151 MS.gene60364:CDS 45.0%
TGTCTCAAAGCTTCGAGCTA+CGG + chr8.2:19306465-19306484 MS.gene60364:CDS 45.0%
TGTGGGCTCAATGGTATTCT+TGG - chr8.2:19304942-19304961 None:intergenic 45.0%
TTAGGTGTTTGTGGGCTCAA+TGG - chr8.2:19304951-19304970 None:intergenic 45.0%
TTCACCCTCTTCTCTTGAAG+AGG + chr8.2:19305865-19305884 MS.gene60364:CDS 45.0%
! ATCTCTTCTGAAGGAACACC+AGG - chr8.2:19306241-19306260 None:intergenic 45.0%
!! GCGGTTTTCAAGACTCACAA+AGG + chr8.2:19306091-19306110 MS.gene60364:CDS 45.0%
!!! GCACCTTGTTTTAGCAAGCA+TGG + chr8.2:19305952-19305971 MS.gene60364:CDS 45.0%
!!! TCAACAGGAGGTTTTGAAGG+AGG - chr8.2:19305206-19305225 None:intergenic 45.0%
ACAAAGACCGATCCAACCGA+AGG - chr8.2:19306127-19306146 None:intergenic 50.0%
AGCACTCGAGTTACTGCACA+AGG + chr8.2:19306318-19306337 MS.gene60364:CDS 50.0%
CGTCGTATCGAGCCAATGAT+AGG - chr8.2:19306042-19306061 None:intergenic 50.0%
CTCTTCTCTTGAAGAGGCAG+CGG + chr8.2:19305871-19305890 MS.gene60364:CDS 50.0%
GCAACTTAATGCCTTGAGCG+AGG + chr8.2:19306546-19306565 MS.gene60364:CDS 50.0%
GCAATTGTGTTCTGTTGGCC+AGG - chr8.2:19306367-19306386 None:intergenic 50.0%
GCTGCCTCTTCAAGAGAAGA+GGG - chr8.2:19305872-19305891 None:intergenic 50.0%
GGCCAACAGAACACAATTGC+AGG + chr8.2:19306367-19306386 MS.gene60364:CDS 50.0%
GTCTCAAAGCTTCGAGCTAC+GGG + chr8.2:19306466-19306485 MS.gene60364:CDS 50.0%
GTCTCCAAGTTGCATGTGAC+TGG - chr8.2:19305642-19305661 None:intergenic 50.0%
TCTGAAGGAACACCAGGCAT+GGG - chr8.2:19306235-19306254 None:intergenic 50.0%
TGCAATTTGACGAGGCAGAG+AGG + chr8.2:19305804-19305823 MS.gene60364:CDS 50.0%
TGGGAAACCGAGTTTGGATC+TGG + chr8.2:19305484-19305503 MS.gene60364:CDS 50.0%
TTCGCCAGTCACATGCAACT+TGG + chr8.2:19305635-19305654 MS.gene60364:CDS 50.0%
TTGAAGAGGCAGCGGATAGA+AGG + chr8.2:19305879-19305898 MS.gene60364:CDS 50.0%
! GCAGCGGATAGAAGGTTGAT+GGG + chr8.2:19305887-19305906 MS.gene60364:CDS 50.0%
! GCGTCTGTTGATTGCAGCAT+TGG + chr8.2:19306007-19306026 MS.gene60364:CDS 50.0%
! TTCTGAAGGAACACCAGGCA+TGG - chr8.2:19306236-19306255 None:intergenic 50.0%
!! ATCATTGGCTCGATACGACG+AGG + chr8.2:19306042-19306061 MS.gene60364:CDS 50.0%
CAGACGCCACTTCCACTTCT+TGG - chr8.2:19305994-19306013 None:intergenic 55.0%
CGCTGCCTCTTCAAGAGAAG+AGG - chr8.2:19305873-19305892 None:intergenic 55.0%
GGAGGGAATCATCCTTCGGT+TGG + chr8.2:19306112-19306131 MS.gene60364:CDS 55.0%
GGCAGCGGATAGAAGGTTGA+TGG + chr8.2:19305886-19305905 MS.gene60364:CDS 55.0%
TCGATACGACGAGGCCATCT+TGG + chr8.2:19306051-19306070 MS.gene60364:CDS 55.0%
TGTTGAGGAAGGCCAGCAAC+AGG + chr8.2:19305601-19305620 MS.gene60364:CDS 55.0%
!! TGCTGGCCTTCCTCAACAAC+AGG - chr8.2:19305599-19305618 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 19304849 19307221 19304849 ID=MS.gene60364
chr8.2 mRNA 19304849 19307221 19304849 ID=MS.gene60364.t1;Parent=MS.gene60364
chr8.2 exon 19304849 19306683 19304849 ID=MS.gene60364.t1.exon1;Parent=MS.gene60364.t1
chr8.2 CDS 19304849 19306683 19304849 ID=cds.MS.gene60364.t1;Parent=MS.gene60364.t1
chr8.2 exon 19307038 19307221 19307038 ID=MS.gene60364.t1.exon2;Parent=MS.gene60364.t1
chr8.2 CDS 19307038 19307221 19307038 ID=cds.MS.gene60364.t1;Parent=MS.gene60364.t1
Gene Sequence

>MS.gene60364

ATGCCAGGTATTGTTCCAATTGAAGGAAATAAAATGAATGAACTTGAGAACCCTTCACCCTCTAAGAACATATATAATAAAATCAATTCACCAAGAATACCATTGAGCCCACAAACACCTAAAAGTGTTGAGAGGTTTCATGAAATTGTACATGATGCAAGACGTTCGCGTCGAACACGCTCAAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTTTAACTGATTCAGAATTTAGCCATATTAGTGGAGAACAAATGAGGAAGATGGAGATAGTGAAAGAGGAAATGGTGAAAAAGATACTGAGGGATTCTAGCAGTGAAACACCATCAATATCAAGAGCTAAGGGAAAAAATCCTCCTTCAAAACCTCCTGTTGAAAGGAAGAATGGAAACAATCCTTTGAGAAAACAAAGTACAACAGTTACTAATCGTGTTGTAAAACCTAAGAATGCTTCTATTGGAAGATCAAGGTCACAAAGTCGAGTCGACGATTCTAAGGAATCAACATTTGATAATCCTGAGCTTGGACCATTTTTATTAAAGAAAGCAAGGGATTTGATTTCATTAGGAGAGAATCCGAGGAAAGCTCTCGAGTTATCGCTTCAAGCGATGAAATTGTTTGAGAATTCTGCAAATGGGAAACCGAGTTTGGATCTGGTTATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGTCATTATAATGAGGCAATTCCAATTTTAGAGCGATCGATCGAAATTCCTGTTGTTGAGGAAGGCCAGCAACAGGCAATTGCGAAATTCGCCAGTCACATGCAACTTGGAGACACTTATGCTATGCTAGGCCAACTTGAGAATTCAATTATGTGTTACAATAATGGGTTGGAAGTACAAAGAAAGGTTTTGGGAGTAACTGATCCAAGAGTTGGTGAAACTTGTAGGTATGTAGCAGAAGCTAATTTTCAAGCATTGCAATTTGACGAGGCAGAGAGGCTGTGTCAAATTGCTCTTGATATTCATAGAGAAAATGGTTCACCCTCTTCTCTTGAAGAGGCAGCGGATAGAAGGTTGATGGGTCTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAGCACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAAGTGGAAGTGGCGTCTGTTGATTGCAGCATTGGAGACACATTCCTATCATTGGCTCGATACGACGAGGCCATCTTGGCGTATAAAAAAGCGTTAGCGGTTTTCAAGACTCACAAAGGAGGGAATCATCCTTCGGTTGGATCGGTCTTTGTACGTTTGGCTGAGTTGTATAATAGAACATGGAAGGTAAGGGAATCAAAATTATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGCCTGGTGTTCCTTCAGAAGAGATTGCTAGTGGTCTTGTGAACGTTGCAGCTATTTACGAGTCAATGAATGAGCTTGAACAAGCACTCGAGTTACTGCACAAGGCACTAGAGATACATAATGATGCCCCTGGCCAACAGAACACAATTGCAGGAATTGAAGCTCAAATGGGGGTCATATACTATGTGTTGGGAAACCAGACTGAATCTTACAATGCTTTCAAGAATGCTGTCTCAAAGCTTCGAGCTACGGGAGAGAAAAAATCGGCTTTCTTTGGTTTTGTTCTTAATCAAATGGGCCTTTGTTGTGTGCAACTTAATGCCTTGAGCGAGGCTGTCAAATTATTTGAAGAAGCAAAGATTGTTTTGGAACAAGAGTACGGTCCTTATCACCCTGAAACTCTTGGGGTATATAGCAATCTTGCTGGCACATATGATGCAATTGGCAGGTATACATTCTTAGTTTGTGACTGTCTTTTTTTGTTGTTATACCCATGTTTGTTTGCAAGTATTACTTCAAGAGTTGAATATTTGCACCCCTTTCATGATATTGAGGCATTATCCAAAGCAAGCTATAGTTATTTGTGATGTTGTATATATATTTTACTAGATCTAATAATCAAGTAGGGCCACTAATGTTCAAAATTAGTATAATGTCTATTATTTGAATAAACCAACCCACAGTATATGGTATGTAGTTTCTTGCTTCATGGTTTTTGAGATTTATATAGGTTAGATATGATCAAATAAGAAATGATTATGTGAAAGTTATTTTGTTCATGTACTATGATATGCTATTTCAGGGTGGACGATGCAATTGATATTATGGAGTACATTGTAGTTGTGAGGGAGGAAAAACTTGGGACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGGTTGGAAGTATTGTTGAAGGAAACAGGCAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGATTCTTCTTGATGTTAATGAGGACTAA

Protein sequence

>MS.gene60364.t1

MPGIVPIEGNKMNELENPSPSKNIYNKINSPRIPLSPQTPKSVERFHEIVHDARRSRRTRSSQSFGSDSDWSLTDSEFSHISGEQMRKMEIVKEEMVKKILRDSSSETPSISRAKGKNPPSKPPVERKNGNNPLRKQSTTVTNRVVKPKNASIGRSRSQSRVDDSKESTFDNPELGPFLLKKARDLISLGENPRKALELSLQAMKLFENSANGKPSLDLVMCLHVTAAIYCSLGHYNEAIPILERSIEIPVVEEGQQQAIAKFASHMQLGDTYAMLGQLENSIMCYNNGLEVQRKVLGVTDPRVGETCRYVAEANFQALQFDEAERLCQIALDIHRENGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGGNHPSVGSVFVRLAELYNRTWKVRESKLYCENALKIYENPMPGVPSEEIASGLVNVAAIYESMNELEQALELLHKALEIHNDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAVSKLRATGEKKSAFFGFVLNQMGLCCVQLNALSEAVKLFEEAKIVLEQEYGPYHPETLGVYSNLAGTYDAIGRVDDAIDIMEYIVVVREEKLGTAHFDVVDEKRRLEVLLKETGRVRNRKTKSLEILLDVNED