Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60549.t1 | XP_013469374.1 | 99.1 | 530 | 5 | 0 | 1 | 530 | 1 | 530 | 5.90E-306 | 1059.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60549.t1 | Q9LZR3 | 76.6 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 1.8e-231 | 803.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60549.t1 | A0A072VNP9 | 99.1 | 530 | 5 | 0 | 1 | 530 | 1 | 530 | 4.2e-306 | 1059.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051789 | MS.gene60549 | 0.802284 | 6.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60549.t1 | MTR_1g492700 | 99.057 | 530 | 5 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1090 |
| MS.gene60549.t1 | MTR_7g103590 | 76.460 | 531 | 121 | 2 | 1 | 528 | 1 | 530 | 0.0 | 879 |
| MS.gene60549.t1 | MTR_1g061510 | 75.624 | 521 | 126 | 1 | 10 | 530 | 4 | 523 | 0.0 | 857 |
| MS.gene60549.t1 | MTR_1g061340 | 71.785 | 521 | 146 | 1 | 10 | 530 | 4 | 523 | 0.0 | 813 |
| MS.gene60549.t1 | MTR_1g061280 | 71.401 | 521 | 148 | 1 | 10 | 530 | 4 | 523 | 0.0 | 803 |
| MS.gene60549.t1 | MTR_1g061270 | 70.441 | 521 | 152 | 2 | 10 | 530 | 4 | 522 | 0.0 | 793 |
| MS.gene60549.t1 | MTR_4g055520 | 67.297 | 529 | 159 | 3 | 12 | 527 | 15 | 542 | 0.0 | 760 |
| MS.gene60549.t1 | MTR_4g055520 | 69.038 | 478 | 140 | 3 | 12 | 482 | 15 | 491 | 0.0 | 707 |
| MS.gene60549.t1 | MTR_7g101950 | 63.529 | 510 | 182 | 3 | 21 | 528 | 21 | 528 | 0.0 | 699 |
| MS.gene60549.t1 | MTR_4g055520 | 70.046 | 434 | 117 | 2 | 107 | 527 | 29 | 462 | 0.0 | 656 |
| MS.gene60549.t1 | MTR_3g103500 | 48.611 | 432 | 216 | 3 | 25 | 455 | 171 | 597 | 2.78e-146 | 436 |
| MS.gene60549.t1 | MTR_4g006010 | 48.190 | 442 | 225 | 2 | 16 | 457 | 162 | 599 | 1.02e-145 | 435 |
| MS.gene60549.t1 | MTR_3g109040 | 47.033 | 455 | 238 | 2 | 25 | 479 | 144 | 595 | 2.48e-144 | 431 |
| MS.gene60549.t1 | MTR_3g109040 | 47.033 | 455 | 238 | 2 | 25 | 479 | 155 | 606 | 4.95e-144 | 430 |
| MS.gene60549.t1 | MTR_6g007807 | 45.495 | 455 | 239 | 3 | 24 | 477 | 139 | 585 | 2.29e-143 | 428 |
| MS.gene60549.t1 | MTR_8g012320 | 41.588 | 529 | 275 | 5 | 25 | 524 | 175 | 698 | 6.06e-133 | 402 |
| MS.gene60549.t1 | MTR_3g103500 | 50.621 | 322 | 154 | 2 | 25 | 345 | 171 | 488 | 1.13e-107 | 331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60549.t1 | AT5G03760 | 76.608 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 0.0 | 832 |
| MS.gene60549.t1 | AT5G22740 | 71.401 | 521 | 146 | 3 | 10 | 528 | 14 | 533 | 0.0 | 796 |
| MS.gene60549.t1 | AT1G23480 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| MS.gene60549.t1 | AT1G23480 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| MS.gene60549.t1 | AT1G23480 | 70.539 | 482 | 142 | 0 | 47 | 528 | 1 | 482 | 0.0 | 739 |
| MS.gene60549.t1 | AT4G13410 | 64.833 | 509 | 173 | 2 | 16 | 524 | 34 | 536 | 0.0 | 728 |
| MS.gene60549.t1 | AT2G35650 | 66.732 | 514 | 167 | 2 | 17 | 530 | 43 | 552 | 0.0 | 726 |
| MS.gene60549.t1 | AT5G16190 | 67.000 | 500 | 163 | 2 | 25 | 524 | 6 | 503 | 0.0 | 710 |
| MS.gene60549.t1 | AT1G24070 | 63.168 | 524 | 190 | 3 | 2 | 524 | 30 | 551 | 0.0 | 706 |
| MS.gene60549.t1 | AT2G35650 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| MS.gene60549.t1 | AT2G35650 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| MS.gene60549.t1 | AT5G16190 | 62.852 | 533 | 163 | 3 | 25 | 524 | 6 | 536 | 0.0 | 693 |
| MS.gene60549.t1 | AT3G56000 | 60.501 | 519 | 199 | 4 | 16 | 530 | 13 | 529 | 0.0 | 667 |
| MS.gene60549.t1 | AT5G16190 | 70.022 | 447 | 132 | 2 | 25 | 471 | 6 | 450 | 0.0 | 662 |
| MS.gene60549.t1 | AT5G16190 | 69.231 | 442 | 135 | 1 | 83 | 524 | 2 | 442 | 0.0 | 652 |
| MS.gene60549.t1 | AT4G16590 | 58.020 | 505 | 176 | 3 | 20 | 524 | 51 | 519 | 0.0 | 620 |
| MS.gene60549.t1 | AT1G23480 | 70.694 | 389 | 114 | 0 | 140 | 528 | 21 | 409 | 0.0 | 598 |
| MS.gene60549.t1 | AT4G13410 | 67.105 | 380 | 120 | 1 | 145 | 524 | 1 | 375 | 0.0 | 565 |
| MS.gene60549.t1 | AT2G35650 | 67.684 | 393 | 124 | 1 | 138 | 530 | 5 | 394 | 0.0 | 561 |
| MS.gene60549.t1 | AT4G13410 | 64.444 | 360 | 119 | 3 | 16 | 374 | 34 | 385 | 2.93e-176 | 502 |
| MS.gene60549.t1 | AT1G24070 | 61.039 | 385 | 136 | 4 | 2 | 385 | 30 | 401 | 4.70e-171 | 489 |
| MS.gene60549.t1 | AT4G31590 | 47.903 | 453 | 228 | 3 | 25 | 472 | 160 | 609 | 1.18e-148 | 442 |
| MS.gene60549.t1 | AT2G24630 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.50e-148 | 442 |
| MS.gene60549.t1 | AT2G24630 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.50e-148 | 442 |
| MS.gene60549.t1 | AT3G28180 | 47.973 | 444 | 222 | 3 | 15 | 457 | 126 | 561 | 2.12e-145 | 434 |
| MS.gene60549.t1 | AT3G07330 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 6.24e-141 | 422 |
| MS.gene60549.t1 | AT3G07330 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 6.24e-141 | 422 |
| MS.gene60549.t1 | AT4G07960 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 5.75e-138 | 415 |
| MS.gene60549.t1 | AT4G07960 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 5.75e-138 | 415 |
Find 127 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTTTCCCTATGGTTT+TGG | 0.193902 | 1.2:+68819810 | MS.gene60549:CDS |
| TCCATAACTCATGCTTTCTT+TGG | 0.225275 | 1.2:+68821503 | MS.gene60549:CDS |
| AGCAAATCTCTTCAGGAAAA+TGG | 0.286938 | 1.2:+68822382 | MS.gene60549:CDS |
| AGGACCAAGGCAACAGTTAT+AGG | 0.295281 | 1.2:+68822877 | MS.gene60549:CDS |
| CTCAACAGATCCAATCATTA+AGG | 0.296511 | 1.2:+68820848 | MS.gene60549:CDS |
| ATTGTCTTTCTTAAGTTGTT+TGG | 0.309441 | 1.2:+68819724 | MS.gene60549:CDS |
| ATGGGTAGTTACTGAGAAAT+TGG | 0.313856 | 1.2:+68822927 | MS.gene60549:CDS |
| CATGCTTTCTTTGGTTTCAA+TGG | 0.321614 | 1.2:+68821512 | MS.gene60549:CDS |
| TTGGAGTTCCAACAGCATTA+AGG | 0.324765 | 1.2:-68822717 | None:intergenic |
| GGATGCTATGATCTTGCCTT+TGG | 0.327298 | 1.2:+68823154 | MS.gene60549:CDS |
| TCTATTGCCTTCTTTGTTGT+GGG | 0.334726 | 1.2:+68823211 | MS.gene60549:CDS |
| CTATCATTTCCTTGTGGAAC+AGG | 0.336157 | 1.2:+68821472 | MS.gene60549:CDS |
| TCCCATTTGTAATGTTTCTC+TGG | 0.336628 | 1.2:-68819754 | None:intergenic |
| AGGCTCCCACACCAAGTTCT+AGG | 0.349691 | 1.2:-68823117 | None:intergenic |
| GATTTCAAAACCTTAATGAT+TGG | 0.350715 | 1.2:-68820858 | None:intergenic |
| TTAACCAAATGAATTTCATT+TGG | 0.366936 | 1.2:+68819593 | MS.gene60549:CDS |
| TCTGGAACTAAAACAGTTGC+AGG | 0.378471 | 1.2:-68822643 | None:intergenic |
| GTTGCCAAATGAAATTCATT+TGG | 0.381283 | 1.2:-68819597 | None:intergenic |
| AACCAGAGAAACATTACAAA+TGG | 0.386703 | 1.2:+68819752 | MS.gene60549:CDS |
| CACTTGGGAACTTCTACTTC+TGG | 0.390733 | 1.2:-68822661 | None:intergenic |
| GATGCTATGATCTTGCCTTT+GGG | 0.390992 | 1.2:+68823155 | MS.gene60549:CDS |
| GAATTTGAAAGTGTGCATTA+TGG | 0.393541 | 1.2:+68819565 | MS.gene60549:CDS |
| GTGGCCCAGCAAATCTCTTC+AGG | 0.393738 | 1.2:+68822375 | MS.gene60549:CDS |
| TTACAAATGGGAGGCACTTA+AGG | 0.395765 | 1.2:+68819765 | MS.gene60549:CDS |
| ATCTATTGCCTTCTTTGTTG+TGG | 0.397674 | 1.2:+68823210 | MS.gene60549:CDS |
| CGGTAGGCTTTGAATGTACT+TGG | 0.409136 | 1.2:-68822329 | None:intergenic |
| CCACATGGGCTATGATCTTC+CGG | 0.409526 | 1.2:-68822591 | None:intergenic |
| CCGCACAACAGTGGAAGATA+TGG | 0.414499 | 1.2:+68821694 | MS.gene60549:CDS |
| TCTATGTTCCCAGGTCTTAG+AGG | 0.415597 | 1.2:+68823251 | MS.gene60549:CDS |
| CGGTAAAGAAAGTTAGATTC+AGG | 0.418214 | 1.2:-68821153 | None:intergenic |
| CAGGTGTATCAATTATCAAT+TGG | 0.424571 | 1.2:+68820768 | MS.gene60549:intron |
| AAACATAAAGTATGAGATAA+GGG | 0.425945 | 1.2:+68821029 | MS.gene60549:CDS |
| ATGCAGGTACAGCTGGTGTT+TGG | 0.427415 | 1.2:+68821633 | MS.gene60549:intron |
| CAAAGAAGGCAATAGATTGC+AGG | 0.430943 | 1.2:-68823204 | None:intergenic |
| AGTTCCAGTGTTGAAATTGT+TGG | 0.435622 | 1.2:+68819639 | MS.gene60549:CDS |
| ATTACACTCCTTAATGCTGT+TGG | 0.436203 | 1.2:+68822709 | MS.gene60549:CDS |
| CAAACCTATAACTGTTGCCT+TGG | 0.447912 | 1.2:-68822881 | None:intergenic |
| AGGATTCATTTCCTAGAACT+TGG | 0.450671 | 1.2:+68823106 | MS.gene60549:intron |
| ATTTCATTTGGCAACAAGCT+AGG | 0.462248 | 1.2:+68819605 | MS.gene60549:CDS |
| GATGCTCTTAAAATAAAATC+AGG | 0.465710 | 1.2:+68822952 | MS.gene60549:CDS |
| TGGAAACTCTGCTTTCCCTA+TGG | 0.470085 | 1.2:+68819804 | MS.gene60549:CDS |
| GAGATAAGGGAAAATAGAAA+TGG | 0.471145 | 1.2:+68821042 | MS.gene60549:CDS |
| TAGGTTTGTTTGAGGCAGGT+AGG | 0.472221 | 1.2:+68822896 | MS.gene60549:CDS |
| TGTGAGAGATGGAGAAGGAA+AGG | 0.472902 | 1.2:+68821003 | MS.gene60549:CDS |
| AGGCAGGTAGGGTAAATGAA+TGG | 0.473575 | 1.2:+68822908 | MS.gene60549:CDS |
| AATAGAAATGGTTACAAAGC+TGG | 0.476155 | 1.2:+68821054 | MS.gene60549:CDS |
| GTTCAAGCTCGATGGCAATT+CGG | 0.480229 | 1.2:+68821216 | MS.gene60549:CDS |
| GTTATAGGTTTGTTTGAGGC+AGG | 0.484142 | 1.2:+68822892 | MS.gene60549:CDS |
| ACCAAAGAAAGCATGAGTTA+TGG | 0.484858 | 1.2:-68821504 | None:intergenic |
| AATCCCAATGTATAATGAAA+AGG | 0.485916 | 1.2:+68819837 | MS.gene60549:CDS |
| TTGAAAATCAGCATCAAAGA+TGG | 0.492249 | 1.2:-68821130 | None:intergenic |
| TAAACATAAAGTATGAGATA+AGG | 0.492901 | 1.2:+68821028 | MS.gene60549:CDS |
| TTTGTAGAAAGAGTTTATAT+GGG | 0.493598 | 1.2:+68819694 | MS.gene60549:CDS |
| TTCCTTGTGGAACAGGAAGT+TGG | 0.500052 | 1.2:+68821479 | MS.gene60549:CDS |
| ATGGTTCATGCAGGTACAGC+TGG | 0.500432 | 1.2:+68821626 | MS.gene60549:intron |
| AAAGCTGGTGCTCTTAAAGA+AGG | 0.505067 | 1.2:+68821069 | MS.gene60549:CDS |
| TTCAACACTGGAACTATAAG+TGG | 0.505104 | 1.2:-68819631 | None:intergenic |
| TTTCATTTGGCAACAAGCTA+GGG | 0.505126 | 1.2:+68819606 | MS.gene60549:CDS |
| TATATAGACAGCACCCCACT+TGG | 0.506102 | 1.2:-68822677 | None:intergenic |
| GAGCTGCATGTGGGTTATCA+TGG | 0.506578 | 1.2:+68820790 | MS.gene60549:CDS |
| CTATTGCCTTCTTTGTTGTG+GGG | 0.506806 | 1.2:+68823212 | MS.gene60549:CDS |
| AGGTTTGTTTGAGGCAGGTA+GGG | 0.507397 | 1.2:+68822897 | MS.gene60549:CDS |
| CTTGATCAAAATCCACAAGT+TGG | 0.507813 | 1.2:+68821189 | MS.gene60549:CDS |
| CACTAAATGAAGCTGGTGGA+TGG | 0.511876 | 1.2:+68821666 | MS.gene60549:CDS |
| GGGATTTGCACCAAAACCAT+AGG | 0.516420 | 1.2:-68819820 | None:intergenic |
| ACCAGAGAAACATTACAAAT+GGG | 0.517363 | 1.2:+68819753 | MS.gene60549:CDS |
| AACAGTTATAGGTTTGTTTG+AGG | 0.523290 | 1.2:+68822888 | MS.gene60549:CDS |
| TGGGTAGTTACTGAGAAATT+GGG | 0.526326 | 1.2:+68822928 | MS.gene60549:CDS |
| AAGGATGATGATATCGAGCT+TGG | 0.528085 | 1.2:+68819784 | MS.gene60549:CDS |
| GGCAGGTAGGGTAAATGAAT+GGG | 0.528834 | 1.2:+68822909 | MS.gene60549:CDS |
| TACGAGCTAGTCTCAAAGGC+TGG | 0.530014 | 1.2:+68821726 | MS.gene60549:CDS |
| TATTGCCTTCTTTGTTGTGG+GGG | 0.530266 | 1.2:+68823213 | MS.gene60549:CDS |
| CATTCCACTTAGTAATATTG+TGG | 0.530712 | 1.2:+68822824 | MS.gene60549:CDS |
| AAGAATGCAAGAGATGTCAT+TGG | 0.534193 | 1.2:+68821448 | MS.gene60549:CDS |
| ATGTTGGCATCTATGTTCCC+AGG | 0.535755 | 1.2:+68823242 | MS.gene60549:CDS |
| GAGTGAGTTCCTCTAAGACC+TGG | 0.550085 | 1.2:-68823260 | None:intergenic |
| ACTACCAACAATTTCAACAC+TGG | 0.552023 | 1.2:-68819643 | None:intergenic |
| AAAATACCTTGAGGTCACTA+AGG | 0.552124 | 1.2:-68821760 | None:intergenic |
| TGAATAATAATTCTATCAGA+TGG | 0.555057 | 1.2:-68820813 | None:intergenic |
| TAGAATGTGAGAGATGGAGA+AGG | 0.558986 | 1.2:+68820998 | MS.gene60549:CDS |
| AAAATGTTATGTCAATGCAT+AGG | 0.560427 | 1.2:+68822857 | MS.gene60549:CDS |
| CTCGTATCACGATCGATGGA+AGG | 0.562630 | 1.2:+68822995 | MS.gene60549:CDS |
| AAATGAAGCTGGTGGATGGA+AGG | 0.564281 | 1.2:+68821670 | MS.gene60549:CDS |
| GCAGTACGAGCTAGTCTCAA+AGG | 0.568633 | 1.2:+68821722 | MS.gene60549:CDS |
| TGGAGATAGAATGTGAGAGA+TGG | 0.570198 | 1.2:+68820992 | MS.gene60549:CDS |
| ACCACCTGTGTTGCTGATAA+CGG | 0.570982 | 1.2:-68822349 | None:intergenic |
| GGATTTGCACCAAAACCATA+GGG | 0.574114 | 1.2:-68819819 | None:intergenic |
| ATTTCAGCACTAAATGAAGC+TGG | 0.577109 | 1.2:+68821659 | MS.gene60549:CDS |
| TTATCAATTGGAGCTGCATG+TGG | 0.578331 | 1.2:+68820780 | MS.gene60549:CDS |
| AGTGAGTTCCTCTAAGACCT+GGG | 0.582884 | 1.2:-68823259 | None:intergenic |
| ATTGGACTATCATTTCCTTG+TGG | 0.584551 | 1.2:+68821466 | MS.gene60549:CDS |
| TGTGTACCTTAGTGACCTCA+AGG | 0.585422 | 1.2:+68821754 | MS.gene60549:CDS |
| GTATCCACAATATTACTAAG+TGG | 0.588421 | 1.2:-68822828 | None:intergenic |
| CATTTCCTAGAACTTGGTGT+GGG | 0.589574 | 1.2:+68823112 | MS.gene60549:CDS |
| AAGCCTCGTATCACGATCGA+TGG | 0.591131 | 1.2:+68822991 | MS.gene60549:CDS |
| TCATTTCCTAGAACTTGGTG+TGG | 0.591922 | 1.2:+68823111 | MS.gene60549:CDS |
| CCCAATGTATAATGAAAAGG+AGG | 0.596084 | 1.2:+68819840 | MS.gene60549:CDS |
| CAGAAGTAGAAGTTCCCAAG+TGG | 0.598985 | 1.2:+68822662 | MS.gene60549:CDS |
| TTAAGGAGTGTAATAATACA+AGG | 0.606049 | 1.2:-68822700 | None:intergenic |
| TTGGACTAGTTCAAGCTCGA+TGG | 0.612953 | 1.2:+68821208 | MS.gene60549:CDS |
| CACATAAAACTTCTTCCACA+TGG | 0.616199 | 1.2:-68822548 | None:intergenic |
| AAAATGTAAATGTGACCACA+TGG | 0.616797 | 1.2:-68822606 | None:intergenic |
| TTAAACACAACAGAATATGG+TGG | 0.622551 | 1.2:+68820972 | MS.gene60549:intron |
| GCTTGAACTAGTCCAACTTG+TGG | 0.622881 | 1.2:-68821201 | None:intergenic |
| CAGCAACACAGGTGGTCATG+TGG | 0.623641 | 1.2:+68822356 | MS.gene60549:CDS |
| AGAAGTAGAAGTTCCCAAGT+GGG | 0.627113 | 1.2:+68822663 | MS.gene60549:CDS |
| GATCAAGGAATGGGATGGTG+CGG | 0.636879 | 1.2:-68821173 | None:intergenic |
| CCATATCTTCCACTGTTGTG+CGG | 0.638192 | 1.2:-68821694 | None:intergenic |
| CCTGTGTTGCTGATAACGGT+AGG | 0.640256 | 1.2:-68822345 | None:intergenic |
| ATGGAAGGACCGCACAACAG+TGG | 0.644477 | 1.2:+68821685 | MS.gene60549:CDS |
| TATCAATTGGAGCTGCATGT+GGG | 0.644918 | 1.2:+68820781 | MS.gene60549:CDS |
| AACCAACTTCCTGTTCCACA+AGG | 0.645217 | 1.2:-68821481 | None:intergenic |
| GAAGTAGAAGTTCCCAAGTG+GGG | 0.649479 | 1.2:+68822664 | MS.gene60549:CDS |
| AATAGAAATCATAAGAAACA+AGG | 0.650357 | 1.2:+68822406 | MS.gene60549:CDS |
| GCTCTTAAAATAAAATCAGG+AGG | 0.655234 | 1.2:+68822955 | MS.gene60549:CDS |
| CTTCCATCGATCGTGATACG+AGG | 0.657335 | 1.2:-68822994 | None:intergenic |
| TTAATGCTGTTGGAACTCCA+AGG | 0.658326 | 1.2:+68822719 | MS.gene60549:CDS |
| CCTACCGTTATCAGCAACAC+AGG | 0.662586 | 1.2:+68822345 | MS.gene60549:CDS |
| TCAGCACTAAATGAAGCTGG+TGG | 0.663266 | 1.2:+68821662 | MS.gene60549:CDS |
| ATAGCACTGATTCTTCCCAA+AGG | 0.669004 | 1.2:-68823170 | None:intergenic |
| AGAGAAACATTACAAATGGG+AGG | 0.673251 | 1.2:+68819756 | MS.gene60549:CDS |
| TATGTCAATGCATAGGACCA+AGG | 0.675182 | 1.2:+68822864 | MS.gene60549:CDS |
| AAATGTAAATGTGACCACAT+GGG | 0.678994 | 1.2:-68822605 | None:intergenic |
| ATATAGACAGCACCCCACTT+GGG | 0.679378 | 1.2:-68822676 | None:intergenic |
| ACCGTTATCAGCAACACAGG+TGG | 0.685287 | 1.2:+68822348 | MS.gene60549:CDS |
| TGATGCAGAAAGTGACCATG+TGG | 0.707458 | 1.2:+68822533 | MS.gene60549:intron |
| CCGGAAGATCATAGCCCATG+TGG | 0.731875 | 1.2:+68822591 | MS.gene60549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATGATTAATTTTAATAA+AGG | + | chr1.2:68821909-68821928 | MS.gene60549:intron | 10.0% |
| !!! | AGTTATTTTATTTTAGTAAA+TGG | - | chr1.2:68822237-68822256 | None:intergenic | 10.0% |
| !! | AAAACAAAAACAAAAATTCA+AGG | - | chr1.2:68820388-68820407 | None:intergenic | 15.0% |
| !! | AACATTAATCTCAATTAATT+AGG | - | chr1.2:68821271-68821290 | None:intergenic | 15.0% |
| !! | AATAATTATGATGATTTGAT+TGG | - | chr1.2:68822470-68822489 | None:intergenic | 15.0% |
| !! | ACTAAAATAAAATAACTAGT+TGG | + | chr1.2:68822240-68822259 | MS.gene60549:intron | 15.0% |
| !! | ATTAAAGCAAAAAATAGTAT+AGG | - | chr1.2:68820421-68820440 | None:intergenic | 15.0% |
| !! | ATTGATAAAAAATTAGTTCA+TGG | - | chr1.2:68820713-68820732 | None:intergenic | 15.0% |
| !!! | AATTTTAATATGTGTATGTT+TGG | + | chr1.2:68822001-68822020 | MS.gene60549:intron | 15.0% |
| !!! | ATAACACTAGTTTTTTTTAT+AGG | - | chr1.2:68820272-68820291 | None:intergenic | 15.0% |
| !!! | TCAATAGTTAAAAAGTTTTT+TGG | + | chr1.2:68820728-68820747 | MS.gene60549:intron | 15.0% |
| !! | AAACATAAAGTATGAGATAA+GGG | + | chr1.2:68821029-68821048 | MS.gene60549:CDS | 20.0% |
| !! | AAATATAGAGAAAATTGCAA+GGG | - | chr1.2:68822440-68822459 | None:intergenic | 20.0% |
| !! | AATAGAAATCATAAGAAACA+AGG | + | chr1.2:68822406-68822425 | MS.gene60549:CDS | 20.0% |
| !! | GAATATTTATTTGATCTAGT+AGG | + | chr1.2:68820510-68820529 | MS.gene60549:intron | 20.0% |
| !! | TAAACATAAAGTATGAGATA+AGG | + | chr1.2:68821028-68821047 | MS.gene60549:CDS | 20.0% |
| !! | TAAATATAGAGAAAATTGCA+AGG | - | chr1.2:68822441-68822460 | None:intergenic | 20.0% |
| !! | TAATTTCAAAAAACAGAAGT+AGG | + | chr1.2:68820183-68820202 | MS.gene60549:intron | 20.0% |
| !! | TATTTAAACACAACAGAATA+TGG | + | chr1.2:68820969-68820988 | MS.gene60549:intron | 20.0% |
| !! | TGAATAATAATTCTATCAGA+TGG | - | chr1.2:68820816-68820835 | None:intergenic | 20.0% |
| !! | TTAACCAAATGAATTTCATT+TGG | + | chr1.2:68819593-68819612 | MS.gene60549:CDS | 20.0% |
| !! | TTTGTAGAAAGAGTTTATAT+GGG | + | chr1.2:68819694-68819713 | MS.gene60549:CDS | 20.0% |
| !!! | CTGGTTTACAAATTAAATTT+TGG | - | chr1.2:68822765-68822784 | None:intergenic | 20.0% |
| !!! | TATATAGTTTTTTCTTTGTC+CGG | + | chr1.2:68822572-68822591 | MS.gene60549:CDS | 20.0% |
| !!! | TTTTATAGGAAAACACTTAA+TGG | - | chr1.2:68820258-68820277 | None:intergenic | 20.0% |
| !!! | TTTTGTAGAAAGAGTTTATA+TGG | + | chr1.2:68819693-68819712 | MS.gene60549:CDS | 20.0% |
| ! | AAAATGTTATGTCAATGCAT+AGG | + | chr1.2:68822857-68822876 | MS.gene60549:CDS | 25.0% |
| ! | AAAGTTACACTAACATTAGA+TGG | + | chr1.2:68821369-68821388 | MS.gene60549:intron | 25.0% |
| ! | AAGTACATGAACTTGATTAT+AGG | - | chr1.2:68822793-68822812 | None:intergenic | 25.0% |
| ! | AATCCCAATGTATAATGAAA+AGG | + | chr1.2:68819837-68819856 | MS.gene60549:CDS | 25.0% |
| ! | AGTACATGAACTTGATTATA+GGG | - | chr1.2:68822792-68822811 | None:intergenic | 25.0% |
| ! | ATATGATTGAAAATACCTTG+AGG | - | chr1.2:68821772-68821791 | None:intergenic | 25.0% |
| ! | ATTAATTAGGAGTTTCATGA+AGG | - | chr1.2:68821258-68821277 | None:intergenic | 25.0% |
| ! | CAAGGAATTAAAAGCAAAAA+TGG | - | chr1.2:68820370-68820389 | None:intergenic | 25.0% |
| ! | CATTATCAAAATTCTTACCT+TGG | - | chr1.2:68822739-68822758 | None:intergenic | 25.0% |
| ! | GATGCTCTTAAAATAAAATC+AGG | + | chr1.2:68822952-68822971 | MS.gene60549:CDS | 25.0% |
| ! | GATTTCAAAACCTTAATGAT+TGG | - | chr1.2:68820861-68820880 | None:intergenic | 25.0% |
| ! | GTTTATTAATTACCCTTTCA+AGG | + | chr1.2:68823022-68823041 | MS.gene60549:intron | 25.0% |
| ! | TTAAATTCACAAATACAGCT+TGG | + | chr1.2:68821544-68821563 | MS.gene60549:intron | 25.0% |
| ! | TTTAATGTAAGCAAACAAGA+TGG | - | chr1.2:68820151-68820170 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr1.2:68819993-68820012 | MS.gene60549:intron | 25.0% |
| !! | ATTGTCTTTCTTAAGTTGTT+TGG | + | chr1.2:68819724-68819743 | MS.gene60549:CDS | 25.0% |
| !! | ATTTTCTACATTATCTTGCA+TGG | + | chr1.2:68820908-68820927 | MS.gene60549:intron | 25.0% |
| !! | TTAAGGAGTGTAATAATACA+AGG | - | chr1.2:68822703-68822722 | None:intergenic | 25.0% |
| !!! | AGTTCATGTACTTTTTTTGT+AGG | + | chr1.2:68822800-68822819 | MS.gene60549:intron | 25.0% |
| !!! | TAGCTTTTAGAAAATCATTG+TGG | + | chr1.2:68822081-68822100 | MS.gene60549:intron | 25.0% |
| AAAAAACAGAAGTAGGTTGT+TGG | + | chr1.2:68820190-68820209 | MS.gene60549:intron | 30.0% | |
| AAAATGTAAATGTGACCACA+TGG | - | chr1.2:68822609-68822628 | None:intergenic | 30.0% | |
| AAATGTAAATGTGACCACAT+GGG | - | chr1.2:68822608-68822627 | None:intergenic | 30.0% | |
| AACCAGAGAAACATTACAAA+TGG | + | chr1.2:68819752-68819771 | MS.gene60549:CDS | 30.0% | |
| AACTTGATTATAGGGAAAAC+TGG | - | chr1.2:68822784-68822803 | None:intergenic | 30.0% | |
| AATAGAAATGGTTACAAAGC+TGG | + | chr1.2:68821054-68821073 | MS.gene60549:CDS | 30.0% | |
| ACCAGAGAAACATTACAAAT+GGG | + | chr1.2:68819753-68819772 | MS.gene60549:CDS | 30.0% | |
| ATTAACTGCAAGCATTAAGA+AGG | - | chr1.2:68821408-68821427 | None:intergenic | 30.0% | |
| CACATAAACTCAATCAGATA+TGG | + | chr1.2:68821317-68821336 | MS.gene60549:intron | 30.0% | |
| CACTTTCTGCATCATATATA+TGG | - | chr1.2:68822527-68822546 | None:intergenic | 30.0% | |
| CAGGTGTATCAATTATCAAT+TGG | + | chr1.2:68820768-68820787 | MS.gene60549:intron | 30.0% | |
| CATCATCATCTAATATCACA+TGG | - | chr1.2:68821601-68821620 | None:intergenic | 30.0% | |
| CATGTGATATTAGATGATGA+TGG | + | chr1.2:68821599-68821618 | MS.gene60549:intron | 30.0% | |
| CATTCCACTTAGTAATATTG+TGG | + | chr1.2:68822824-68822843 | MS.gene60549:CDS | 30.0% | |
| CGAGAATCAAAAGCAAAAAA+TGG | + | chr1.2:68820623-68820642 | MS.gene60549:intron | 30.0% | |
| GAGATAAGGGAAAATAGAAA+TGG | + | chr1.2:68821042-68821061 | MS.gene60549:CDS | 30.0% | |
| GCTCTTAAAATAAAATCAGG+AGG | + | chr1.2:68822955-68822974 | MS.gene60549:CDS | 30.0% | |
| GTATCCACAATATTACTAAG+TGG | - | chr1.2:68822831-68822850 | None:intergenic | 30.0% | |
| GTTGCCAAATGAAATTCATT+TGG | - | chr1.2:68819600-68819619 | None:intergenic | 30.0% | |
| TAAACACTATAGCCTATGTT+TGG | - | chr1.2:68822137-68822156 | None:intergenic | 30.0% | |
| TATATATCACTGTGAAGCTA+TGG | + | chr1.2:68819867-68819886 | MS.gene60549:intron | 30.0% | |
| TATTAATTACCCTTTCAAGG+AGG | + | chr1.2:68823025-68823044 | MS.gene60549:intron | 30.0% | |
| TCAACAAACAAGTAAGTACA+AGG | - | chr1.2:68823077-68823096 | None:intergenic | 30.0% | |
| TTAAACACAACAGAATATGG+TGG | + | chr1.2:68820972-68820991 | MS.gene60549:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr1.2:68819962-68819981 | None:intergenic | 30.0% | |
| TTGAAAATCAGCATCAAAGA+TGG | - | chr1.2:68821133-68821152 | None:intergenic | 30.0% | |
| ! | AACAGTTATAGGTTTGTTTG+AGG | + | chr1.2:68822888-68822907 | MS.gene60549:CDS | 30.0% |
| ! | ACCTCCTTTTCATTATACAT+TGG | - | chr1.2:68819844-68819863 | None:intergenic | 30.0% |
| ! | CCTCCTTTTCATTATACATT+GGG | - | chr1.2:68819843-68819862 | None:intergenic | 30.0% |
| ! | GAATTTGAAAGTGTGCATTA+TGG | + | chr1.2:68819565-68819584 | MS.gene60549:CDS | 30.0% |
| ! | TATTGTACATTTTCTCTGCT+TGG | + | chr1.2:68822486-68822505 | MS.gene60549:intron | 30.0% |
| ! | TTGTTTGTTGATGTTGAAAC+AGG | + | chr1.2:68823086-68823105 | MS.gene60549:intron | 30.0% |
| ! | TTTAATAAAGGAGAGTACGT+GGG | + | chr1.2:68821921-68821940 | MS.gene60549:intron | 30.0% |
| !! | ATTAGATGATGATGGTGATA+TGG | + | chr1.2:68821607-68821626 | MS.gene60549:intron | 30.0% |
| !! | TTTTAATAAAGGAGAGTACG+TGG | + | chr1.2:68821920-68821939 | MS.gene60549:intron | 30.0% |
| !!! | GTGTAACTTTTTTTTACCCA+CGG | - | chr1.2:68821359-68821378 | None:intergenic | 30.0% |
| AAAATACCTTGAGGTCACTA+AGG | - | chr1.2:68821763-68821782 | None:intergenic | 35.0% | |
| AACATACTATCCTCCTTGAA+AGG | - | chr1.2:68823038-68823057 | None:intergenic | 35.0% | |
| AAGAATGCAAGAGATGTCAT+TGG | + | chr1.2:68821448-68821467 | MS.gene60549:CDS | 35.0% | |
| ACATACTATCCTCCTTGAAA+GGG | - | chr1.2:68823037-68823056 | None:intergenic | 35.0% | |
| ACTACCAACAATTTCAACAC+TGG | - | chr1.2:68819646-68819665 | None:intergenic | 35.0% | |
| AGAGAAACATTACAAATGGG+AGG | + | chr1.2:68819756-68819775 | MS.gene60549:CDS | 35.0% | |
| AGAGCTATGAAGCATAGATA+CGG | - | chr1.2:68820054-68820073 | None:intergenic | 35.0% | |
| AGCAAATCTCTTCAGGAAAA+TGG | + | chr1.2:68822382-68822401 | MS.gene60549:CDS | 35.0% | |
| AGGATTCATTTCCTAGAACT+TGG | + | chr1.2:68823106-68823125 | MS.gene60549:intron | 35.0% | |
| ATAGCCTATGTTTGGTATCA+CGG | - | chr1.2:68822129-68822148 | None:intergenic | 35.0% | |
| ATCTATTGCCTTCTTTGTTG+TGG | + | chr1.2:68823210-68823229 | MS.gene60549:CDS | 35.0% | |
| ATGGGTAGTTACTGAGAAAT+TGG | + | chr1.2:68822927-68822946 | MS.gene60549:CDS | 35.0% | |
| ATTACACTCCTTAATGCTGT+TGG | + | chr1.2:68822709-68822728 | MS.gene60549:CDS | 35.0% | |
| ATTAGGAGTTTCATGAAGGA+AGG | - | chr1.2:68821254-68821273 | None:intergenic | 35.0% | |
| ATTGGACTATCATTTCCTTG+TGG | + | chr1.2:68821466-68821485 | MS.gene60549:CDS | 35.0% | |
| ATTTCAGCACTAAATGAAGC+TGG | + | chr1.2:68821659-68821678 | MS.gene60549:CDS | 35.0% | |
| ATTTCATTTGGCAACAAGCT+AGG | + | chr1.2:68819605-68819624 | MS.gene60549:CDS | 35.0% | |
| CACATAAAACTTCTTCCACA+TGG | - | chr1.2:68822551-68822570 | None:intergenic | 35.0% | |
| CCCAATGTATAATGAAAAGG+AGG | + | chr1.2:68819840-68819859 | MS.gene60549:CDS | 35.0% | |
| CGGTAAAGAAAGTTAGATTC+AGG | - | chr1.2:68821156-68821175 | None:intergenic | 35.0% | |
| CGTAGCAACCAATTAAGATT+GGG | + | chr1.2:68821796-68821815 | MS.gene60549:intron | 35.0% | |
| CTCAACAGATCCAATCATTA+AGG | + | chr1.2:68820848-68820867 | MS.gene60549:CDS | 35.0% | |
| CTTGATCAAAATCCACAAGT+TGG | + | chr1.2:68821189-68821208 | MS.gene60549:CDS | 35.0% | |
| TCCATAACTCATGCTTTCTT+TGG | + | chr1.2:68821503-68821522 | MS.gene60549:CDS | 35.0% | |
| TCCCATTTGTAATGTTTCTC+TGG | - | chr1.2:68819757-68819776 | None:intergenic | 35.0% | |
| TCGTAGCAACCAATTAAGAT+TGG | + | chr1.2:68821795-68821814 | MS.gene60549:intron | 35.0% | |
| TGGGTAGTTACTGAGAAATT+GGG | + | chr1.2:68822928-68822947 | MS.gene60549:CDS | 35.0% | |
| TTCAACACTGGAACTATAAG+TGG | - | chr1.2:68819634-68819653 | None:intergenic | 35.0% | |
| TTTCATTTGGCAACAAGCTA+GGG | + | chr1.2:68819606-68819625 | MS.gene60549:CDS | 35.0% | |
| ! | ACCAAAGAAAGCATGAGTTA+TGG | - | chr1.2:68821507-68821526 | None:intergenic | 35.0% |
| ! | AGTTCCAGTGTTGAAATTGT+TGG | + | chr1.2:68819639-68819658 | MS.gene60549:CDS | 35.0% |
| ! | ATTTTCCTGAAGAGATTTGC+TGG | - | chr1.2:68822383-68822402 | None:intergenic | 35.0% |
| ! | CATGCTTTCTTTGGTTTCAA+TGG | + | chr1.2:68821512-68821531 | MS.gene60549:CDS | 35.0% |
| ! | TCTATTGCCTTCTTTGTTGT+GGG | + | chr1.2:68823211-68823230 | MS.gene60549:CDS | 35.0% |
| !! | ATTTTGATCAAGGAATGGGA+TGG | - | chr1.2:68821181-68821200 | None:intergenic | 35.0% |
| !! | CAACTTGTGGATTTTGATCA+AGG | - | chr1.2:68821191-68821210 | None:intergenic | 35.0% |
| !! | GTGGATTTTGATCAAGGAAT+GGG | - | chr1.2:68821185-68821204 | None:intergenic | 35.0% |
| !! | TGTGGATTTTGATCAAGGAA+TGG | - | chr1.2:68821186-68821205 | None:intergenic | 35.0% |
| !! | TTTTCCTGAAGAGATTTGCT+GGG | - | chr1.2:68822382-68822401 | None:intergenic | 35.0% |
| AAAGCTGGTGCTCTTAAAGA+AGG | + | chr1.2:68821069-68821088 | MS.gene60549:CDS | 40.0% | |
| AAGGATGATGATATCGAGCT+TGG | + | chr1.2:68819784-68819803 | MS.gene60549:CDS | 40.0% | |
| AATTGATACACCTGCAAGCA+TGG | - | chr1.2:68820762-68820781 | None:intergenic | 40.0% | |
| AGAAACAACTATGATCCACG+TGG | - | chr1.2:68821960-68821979 | None:intergenic | 40.0% | |
| AGAAGTAGAAGTTCCCAAGT+GGG | + | chr1.2:68822663-68822682 | MS.gene60549:CDS | 40.0% | |
| ATGAAGCATAGATACGGACA+CGG | - | chr1.2:68820048-68820067 | None:intergenic | 40.0% | |
| CAAACCTATAACTGTTGCCT+TGG | - | chr1.2:68822884-68822903 | None:intergenic | 40.0% | |
| CAAAGAAGGCAATAGATTGC+AGG | - | chr1.2:68823207-68823226 | None:intergenic | 40.0% | |
| CATAGCATCCACACAAAAAG+AGG | - | chr1.2:68823144-68823163 | None:intergenic | 40.0% | |
| CCAATTAAGATTGGGTCTAG+CGG | + | chr1.2:68821804-68821823 | MS.gene60549:intron | 40.0% | |
| CTATCATTTCCTTGTGGAAC+AGG | + | chr1.2:68821472-68821491 | MS.gene60549:CDS | 40.0% | |
| GATGCTATGATCTTGCCTTT+GGG | + | chr1.2:68823155-68823174 | MS.gene60549:CDS | 40.0% | |
| GGAAGCTAAAAAAAACCACG+TGG | + | chr1.2:68821942-68821961 | MS.gene60549:intron | 40.0% | |
| GGATTTGCACCAAAACCATA+GGG | - | chr1.2:68819822-68819841 | None:intergenic | 40.0% | |
| TAGAATGTGAGAGATGGAGA+AGG | + | chr1.2:68820998-68821017 | MS.gene60549:CDS | 40.0% | |
| TATCAATTGGAGCTGCATGT+GGG | + | chr1.2:68820781-68820800 | MS.gene60549:CDS | 40.0% | |
| TATGTCAATGCATAGGACCA+AGG | + | chr1.2:68822864-68822883 | MS.gene60549:CDS | 40.0% | |
| TCTACCGTGATACCAAACAT+AGG | + | chr1.2:68822122-68822141 | MS.gene60549:intron | 40.0% | |
| TGAGATTTGATGAGATCCGT+GGG | + | chr1.2:68821340-68821359 | MS.gene60549:intron | 40.0% | |
| TGGAGATAGAATGTGAGAGA+TGG | + | chr1.2:68820992-68821011 | MS.gene60549:CDS | 40.0% | |
| TTAATGCTGTTGGAACTCCA+AGG | + | chr1.2:68822719-68822738 | MS.gene60549:CDS | 40.0% | |
| TTATCAATTGGAGCTGCATG+TGG | + | chr1.2:68820780-68820799 | MS.gene60549:CDS | 40.0% | |
| TTGGAGTTCCAACAGCATTA+AGG | - | chr1.2:68822720-68822739 | None:intergenic | 40.0% | |
| ! | CTATTGCCTTCTTTGTTGTG+GGG | + | chr1.2:68823212-68823231 | MS.gene60549:CDS | 40.0% |
| ! | GTTATAGGTTTGTTTGAGGC+AGG | + | chr1.2:68822892-68822911 | MS.gene60549:CDS | 40.0% |
| ! | TATTGCCTTCTTTGTTGTGG+GGG | + | chr1.2:68823213-68823232 | MS.gene60549:CDS | 40.0% |
| ! | TCATTTCCTAGAACTTGGTG+TGG | + | chr1.2:68823111-68823130 | MS.gene60549:CDS | 40.0% |
| ! | TCTGGAACTAAAACAGTTGC+AGG | - | chr1.2:68822646-68822665 | None:intergenic | 40.0% |
| !! | ATAGCACTGATTCTTCCCAA+AGG | - | chr1.2:68823173-68823192 | None:intergenic | 40.0% |
| !! | CATTTCCTAGAACTTGGTGT+GGG | + | chr1.2:68823112-68823131 | MS.gene60549:CDS | 40.0% |
| !! | TTACAAATGGGAGGCACTTA+AGG | + | chr1.2:68819765-68819784 | MS.gene60549:CDS | 40.0% |
| AACCAACTTCCTGTTCCACA+AGG | - | chr1.2:68821484-68821503 | None:intergenic | 45.0% | |
| AGGACCAAGGCAACAGTTAT+AGG | + | chr1.2:68822877-68822896 | MS.gene60549:CDS | 45.0% | |
| AGGCAGGTAGGGTAAATGAA+TGG | + | chr1.2:68822908-68822927 | MS.gene60549:CDS | 45.0% | |
| ATATAGACAGCACCCCACTT+GGG | - | chr1.2:68822679-68822698 | None:intergenic | 45.0% | |
| ATGTTGGCATCTATGTTCCC+AGG | + | chr1.2:68823242-68823261 | MS.gene60549:CDS | 45.0% | |
| CAAGGAGGATAGTATGTTGC+TGG | + | chr1.2:68823040-68823059 | MS.gene60549:intron | 45.0% | |
| CACTAAATGAAGCTGGTGGA+TGG | + | chr1.2:68821666-68821685 | MS.gene60549:CDS | 45.0% | |
| CACTTGGGAACTTCTACTTC+TGG | - | chr1.2:68822664-68822683 | None:intergenic | 45.0% | |
| CAGAAGTAGAAGTTCCCAAG+TGG | + | chr1.2:68822662-68822681 | MS.gene60549:CDS | 45.0% | |
| CCATATCTTCCACTGTTGTG+CGG | - | chr1.2:68821697-68821716 | None:intergenic | 45.0% | |
| CCGCTAGACCCAATCTTAAT+TGG | - | chr1.2:68821807-68821826 | None:intergenic | 45.0% | |
| GAAGTAGAAGTTCCCAAGTG+GGG | + | chr1.2:68822664-68822683 | MS.gene60549:CDS | 45.0% | |
| GATGGTGATATGGTTCATGC+AGG | + | chr1.2:68821617-68821636 | MS.gene60549:intron | 45.0% | |
| GCATCCACACAAAAAGAGGT+AGG | - | chr1.2:68823140-68823159 | None:intergenic | 45.0% | |
| GCTTGAACTAGTCCAACTTG+TGG | - | chr1.2:68821204-68821223 | None:intergenic | 45.0% | |
| GGATGCTATGATCTTGCCTT+TGG | + | chr1.2:68823154-68823173 | MS.gene60549:CDS | 45.0% | |
| GGCAGGTAGGGTAAATGAAT+GGG | + | chr1.2:68822909-68822928 | MS.gene60549:CDS | 45.0% | |
| GGGATTTGCACCAAAACCAT+AGG | - | chr1.2:68819823-68819842 | None:intergenic | 45.0% | |
| GTGAGATTTGATGAGATCCG+TGG | + | chr1.2:68821339-68821358 | MS.gene60549:intron | 45.0% | |
| GTTCAAGCTCGATGGCAATT+CGG | + | chr1.2:68821216-68821235 | MS.gene60549:CDS | 45.0% | |
| TATATAGACAGCACCCCACT+TGG | - | chr1.2:68822680-68822699 | None:intergenic | 45.0% | |
| TCAGCACTAAATGAAGCTGG+TGG | + | chr1.2:68821662-68821681 | MS.gene60549:CDS | 45.0% | |
| TGATGCAGAAAGTGACCATG+TGG | + | chr1.2:68822533-68822552 | MS.gene60549:intron | 45.0% | |
| TGGAAACTCTGCTTTCCCTA+TGG | + | chr1.2:68819804-68819823 | MS.gene60549:CDS | 45.0% | |
| TGTGAGAGATGGAGAAGGAA+AGG | + | chr1.2:68821003-68821022 | MS.gene60549:CDS | 45.0% | |
| TGTGTACCTTAGTGACCTCA+AGG | + | chr1.2:68821754-68821773 | MS.gene60549:CDS | 45.0% | |
| TGTTGGCACAATATACGTCG+TGG | + | chr1.2:68820207-68820226 | MS.gene60549:intron | 45.0% | |
| TTCCTTGTGGAACAGGAAGT+TGG | + | chr1.2:68821479-68821498 | MS.gene60549:CDS | 45.0% | |
| ! | AAATGAAGCTGGTGGATGGA+AGG | + | chr1.2:68821670-68821689 | MS.gene60549:CDS | 45.0% |
| ! | ACCACCTGTGTTGCTGATAA+CGG | - | chr1.2:68822352-68822371 | None:intergenic | 45.0% |
| ! | AGGTTTGTTTGAGGCAGGTA+GGG | + | chr1.2:68822897-68822916 | MS.gene60549:CDS | 45.0% |
| ! | CTCTGCTTTCCCTATGGTTT+TGG | + | chr1.2:68819810-68819829 | MS.gene60549:CDS | 45.0% |
| ! | TAGGTTTGTTTGAGGCAGGT+AGG | + | chr1.2:68822896-68822915 | MS.gene60549:CDS | 45.0% |
| !! | CGGTAGGCTTTGAATGTACT+TGG | - | chr1.2:68822332-68822351 | None:intergenic | 45.0% |
| !! | TTGGACTAGTTCAAGCTCGA+TGG | + | chr1.2:68821208-68821227 | MS.gene60549:CDS | 45.0% |
| !! | TCTATTATTTAAATAAATTT+AGG | + | chr1.2:68822292-68822311 | MS.gene60549:intron | 5.0% |
| AAGCCTCGTATCACGATCGA+TGG | + | chr1.2:68822991-68823010 | MS.gene60549:CDS | 50.0% | |
| ACCGTTATCAGCAACACAGG+TGG | + | chr1.2:68822348-68822367 | MS.gene60549:CDS | 50.0% | |
| ATAGATACGGACACGGACAC+GGG | - | chr1.2:68820041-68820060 | None:intergenic | 50.0% | |
| ATGCAGGTACAGCTGGTGTT+TGG | + | chr1.2:68821633-68821652 | MS.gene60549:intron | 50.0% | |
| ATGGTTCATGCAGGTACAGC+TGG | + | chr1.2:68821626-68821645 | MS.gene60549:intron | 50.0% | |
| CACTGTGAAGCTATGGAGCA+CGG | + | chr1.2:68819874-68819893 | MS.gene60549:intron | 50.0% | |
| CATAGATACGGACACGGACA+CGG | - | chr1.2:68820042-68820061 | None:intergenic | 50.0% | |
| CCGCACAACAGTGGAAGATA+TGG | + | chr1.2:68821694-68821713 | MS.gene60549:CDS | 50.0% | |
| CCTACCGTTATCAGCAACAC+AGG | + | chr1.2:68822345-68822364 | MS.gene60549:CDS | 50.0% | |
| CTCGTATCACGATCGATGGA+AGG | + | chr1.2:68822995-68823014 | MS.gene60549:CDS | 50.0% | |
| CTTCCATCGATCGTGATACG+AGG | - | chr1.2:68822997-68823016 | None:intergenic | 50.0% | |
| GATCAAGGAATGGGATGGTG+CGG | - | chr1.2:68821176-68821195 | None:intergenic | 50.0% | |
| ! | CCACATGGGCTATGATCTTC+CGG | - | chr1.2:68822594-68822613 | None:intergenic | 50.0% |
| ! | GAGCTGCATGTGGGTTATCA+TGG | + | chr1.2:68820790-68820809 | MS.gene60549:CDS | 50.0% |
| ! | GCAGTACGAGCTAGTCTCAA+AGG | + | chr1.2:68821722-68821741 | MS.gene60549:CDS | 50.0% |
| ! | GGAGCCTACCTCTTTTTGTG+TGG | + | chr1.2:68823133-68823152 | MS.gene60549:CDS | 50.0% |
| ! | TACGAGCTAGTCTCAAAGGC+TGG | + | chr1.2:68821726-68821745 | MS.gene60549:CDS | 50.0% |
| !! | CCTGTGTTGCTGATAACGGT+AGG | - | chr1.2:68822348-68822367 | None:intergenic | 50.0% |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | - | chr1.2:68819951-68819970 | None:intergenic | 50.0% |
| AGGCTCCCACACCAAGTTCT+AGG | - | chr1.2:68823120-68823139 | None:intergenic | 55.0% | |
| ATGGAAGGACCGCACAACAG+TGG | + | chr1.2:68821685-68821704 | MS.gene60549:CDS | 55.0% | |
| CACCTGCAAGCATGGAACAG+TGG | - | chr1.2:68820754-68820773 | None:intergenic | 55.0% | |
| CAGCAACACAGGTGGTCATG+TGG | + | chr1.2:68822356-68822375 | MS.gene60549:CDS | 55.0% | |
| CCGGAAGATCATAGCCCATG+TGG | + | chr1.2:68822591-68822610 | MS.gene60549:CDS | 55.0% | |
| GACACGCACGAGTAGTTACG+TGG | + | chr1.2:68820123-68820142 | MS.gene60549:intron | 55.0% | |
| GCCAACCCCCACAACAAAGA+AGG | - | chr1.2:68823221-68823240 | None:intergenic | 55.0% | |
| GTGGCCCAGCAAATCTCTTC+AGG | + | chr1.2:68822375-68822394 | MS.gene60549:CDS | 55.0% | |
| TATGGAGCACGGACACTCCT+CGG | + | chr1.2:68819885-68819904 | MS.gene60549:intron | 55.0% | |
| ! | GCCTTCTTTGTTGTGGGGGT+TGG | + | chr1.2:68823217-68823236 | MS.gene60549:CDS | 55.0% |
| !! | GTTGTGGGGGTTGGCTATGT+TGG | + | chr1.2:68823226-68823245 | MS.gene60549:CDS | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1.2:68819923-68819942 | None:intergenic | 60.0% | |
| AGCACGGACACTCCTCGGAT+TGG | + | chr1.2:68819890-68819909 | MS.gene60549:intron | 60.0% | |
| CTACTCGTGCGTGTCGTGTG+TGG | - | chr1.2:68820118-68820137 | None:intergenic | 60.0% | |
| GCACGGACACTCCTCGGATT+GGG | + | chr1.2:68819891-68819910 | MS.gene60549:intron | 60.0% | |
| GGCCACTGTTCCATGCTTGC+AGG | + | chr1.2:68820749-68820768 | MS.gene60549:intron | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1.2:68819922-68819941 | None:intergenic | 65.0% | |
| CACGGACACGGGACGCAACA+CGG | - | chr1.2:68820030-68820049 | None:intergenic | 65.0% | |
| GATTGGGCGTGTCCCGGTGT+CGG | + | chr1.2:68819907-68819926 | MS.gene60549:intron | 65.0% | |
| ! | TCCTCGGATTGGGCGTGTCC+CGG | + | chr1.2:68819901-68819920 | MS.gene60549:intron | 65.0% |
| ACCGGGACACGCCCAATCCG+AGG | - | chr1.2:68819905-68819924 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 68819541 | 68823270 | 68819541 | ID=MS.gene60549 |
| chr1.2 | mRNA | 68819541 | 68823270 | 68819541 | ID=MS.gene60549.t1;Parent=MS.gene60549 |
| chr1.2 | exon | 68819541 | 68819861 | 68819541 | ID=MS.gene60549.t1.exon1;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68819541 | 68819861 | 68819541 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68820771 | 68820869 | 68820771 | ID=MS.gene60549.t1.exon2;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68820771 | 68820869 | 68820771 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68820985 | 68821237 | 68820985 | ID=MS.gene60549.t1.exon3;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68820985 | 68821237 | 68820985 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68821423 | 68821533 | 68821423 | ID=MS.gene60549.t1.exon4;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68821423 | 68821533 | 68821423 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68821639 | 68821775 | 68821639 | ID=MS.gene60549.t1.exon5;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68821639 | 68821775 | 68821639 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68822314 | 68822427 | 68822314 | ID=MS.gene60549.t1.exon6;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68822314 | 68822427 | 68822314 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68822541 | 68822740 | 68822541 | ID=MS.gene60549.t1.exon7;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68822541 | 68822740 | 68822541 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68822822 | 68823016 | 68822822 | ID=MS.gene60549.t1.exon8;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68822822 | 68823016 | 68822822 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| chr1.2 | exon | 68823108 | 68823270 | 68823108 | ID=MS.gene60549.t1.exon9;Parent=MS.gene60549.t1 |
| chr1.2 | CDS | 68823108 | 68823270 | 68823108 | ID=cds.MS.gene60549.t1;Parent=MS.gene60549.t1 |
| Gene Sequence |
| Protein sequence |
