AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60580.t1 MTR_1g092860 98.598 214 3 0 2 215 71 284 1.20e-161 447
MS.gene60580.t1 MTR_1g041745 45.631 103 55 1 1 103 73 174 2.64e-26 100
MS.gene60580.t1 MTR_1g041745 46.392 97 52 0 1 97 73 169 3.53e-26 100
MS.gene60580.t1 MTR_1g075460 43.299 97 55 0 1 97 91 187 7.45e-24 95.1
MS.gene60580.t1 MTR_7g105260 51.220 82 40 0 124 205 33 114 7.31e-23 90.1
MS.gene60580.t1 MTR_6g477870 48.052 77 40 0 124 200 96 172 5.24e-22 89.0
MS.gene60580.t1 MTR_7g099940 47.727 88 46 0 118 205 30 117 9.88e-22 87.4
MS.gene60580.t1 MTR_4g081520 45.000 80 44 0 125 204 53 132 3.55e-20 83.2
MS.gene60580.t1 MTR_6g477870 49.254 67 34 0 124 190 96 162 1.66e-18 79.7
MS.gene60580.t1 MTR_4g081510 40.964 83 46 1 125 207 46 125 9.05e-18 78.2
MS.gene60580.t1 MTR_4g063560 46.053 76 41 0 124 199 34 109 2.08e-17 75.1
MS.gene60580.t1 MTR_2g096560 44.156 77 43 0 124 200 8 84 4.58e-17 73.6
MS.gene60580.t1 MTR_3g084040 38.947 95 57 1 105 199 18 111 1.42e-16 73.9
MS.gene60580.t1 MTR_7g013730 34.211 114 67 1 100 213 17 122 2.00e-16 75.9
MS.gene60580.t1 MTR_7g013740 34.951 103 65 1 101 203 20 120 2.29e-16 73.6
MS.gene60580.t1 MTR_4g109540 36.471 85 54 0 119 203 38 122 2.85e-16 75.5
MS.gene60580.t1 MTR_4g117350 40.426 94 45 1 107 200 66 148 1.67e-15 71.6
MS.gene60580.t1 MTR_3g084040 37.647 85 52 1 105 189 18 101 1.68e-15 70.1
MS.gene60580.t1 MTR_3g029580 36.559 93 56 1 122 214 31 120 1.76e-15 70.5
MS.gene60580.t1 MTR_2g011000 32.990 97 65 0 3 99 68 164 2.38e-15 72.4
MS.gene60580.t1 MTR_3g080130 40.000 80 48 0 124 203 37 116 3.21e-15 70.1
MS.gene60580.t1 MTR_3g025880 37.209 86 54 0 118 203 39 124 3.83e-15 73.6
MS.gene60580.t1 MTR_4g109540 34.409 93 53 1 119 203 38 130 7.42e-14 68.9
MS.gene60580.t1 MTR_6g043040 35.484 93 59 1 11 102 76 168 3.90e-13 65.5
MS.gene60580.t1 MTR_8g077840 38.554 83 49 1 123 203 135 217 4.29e-13 67.8
MS.gene60580.t1 MTR_4g117350 40.244 82 38 1 107 188 66 136 4.30e-13 64.3
MS.gene60580.t1 MTR_4g088010 48.052 77 39 1 123 199 76 151 4.59e-13 67.4
MS.gene60580.t1 MTR_4g070140 38.462 78 48 0 124 201 9 86 6.51e-13 65.1
MS.gene60580.t1 MTR_4g120340 33.708 89 59 0 11 99 90 178 7.52e-13 66.2
MS.gene60580.t1 MTR_5g071540 34.737 95 62 0 106 200 22 116 2.91e-12 62.4
MS.gene60580.t1 MTR_4g070080 34.615 78 51 0 124 201 7 84 3.26e-12 61.6
MS.gene60580.t1 MTR_2g078090 34.343 99 64 1 11 109 96 193 8.40e-12 63.9
MS.gene60580.t1 MTR_4g070080 35.065 77 50 0 124 200 7 83 9.73e-12 61.2
MS.gene60580.t1 MTR_7g117495 39.024 82 49 1 110 191 5 85 1.04e-11 62.8
MS.gene60580.t1 MTR_7g096260 36.047 86 55 0 124 209 193 278 1.10e-11 63.9
MS.gene60580.t1 MTR_7g096260 36.047 86 55 0 124 209 179 264 1.13e-11 63.9
MS.gene60580.t1 MTR_7g117495 39.024 82 49 1 110 191 5 85 1.17e-11 62.8
MS.gene60580.t1 MTR_8g024520 38.298 94 54 1 124 213 26 119 2.29e-11 62.0
MS.gene60580.t1 MTR_8g024520 38.298 94 54 1 124 213 26 119 2.32e-11 62.0
MS.gene60580.t1 MTR_7g094670 33.945 109 64 1 99 199 867 975 2.94e-11 62.8
MS.gene60580.t1 MTR_3g116130 37.895 95 55 2 124 215 30 123 3.14e-11 61.6
MS.gene60580.t1 MTR_3g029580 40.299 67 40 0 122 188 31 97 3.36e-11 59.3
MS.gene60580.t1 MTR_4g070190 33.333 78 52 0 124 201 9 86 4.94e-11 59.3
MS.gene60580.t1 MTR_3g116130 37.895 95 55 2 124 215 30 123 5.42e-11 61.6
MS.gene60580.t1 MTR_2g026180 31.111 135 82 3 61 189 47 176 9.01e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60580.t1 AT3G20930 71.564 211 54 2 4 214 167 371 7.74e-108 315
MS.gene60580.t1 AT3G20930 50.000 86 43 0 12 97 72 157 1.84e-27 107
MS.gene60580.t1 AT3G20930 69.907 216 54 3 4 214 167 376 1.68e-105 309
MS.gene60580.t1 AT3G20930 50.000 86 43 0 12 97 72 157 1.74e-27 107
MS.gene60580.t1 AT1G32580 47.423 97 51 0 1 97 84 180 5.82e-27 103
MS.gene60580.t1 AT2G35240 40.517 116 69 0 1 116 87 202 3.48e-24 96.3
MS.gene60580.t1 AT1G73530 47.778 90 44 1 124 213 78 164 7.04e-22 89.0
MS.gene60580.t1 AT4G13850 40.741 108 61 2 100 205 13 119 7.64e-20 82.4
MS.gene60580.t1 AT4G13850 40.385 104 61 1 100 203 13 115 8.42e-20 82.0
MS.gene60580.t1 AT4G13850 40.741 108 61 2 100 205 13 119 9.53e-20 82.4
MS.gene60580.t1 AT4G13850 40.741 108 61 2 100 205 13 119 1.07e-19 82.4
MS.gene60580.t1 AT5G06210 41.905 105 56 3 99 200 9 111 2.80e-19 80.9
MS.gene60580.t1 AT3G23830 43.023 86 47 1 122 205 34 119 5.42e-19 80.1
MS.gene60580.t1 AT3G23830 43.023 86 47 1 122 205 34 119 5.42e-19 80.1
MS.gene60580.t1 AT2G37510 46.250 80 43 0 118 197 29 108 6.23e-19 80.1
MS.gene60580.t1 AT4G20030 48.052 77 40 0 124 200 41 117 2.25e-18 79.0
MS.gene60580.t1 AT2G27330 40.964 83 46 1 125 204 23 105 5.74e-18 76.6
MS.gene60580.t1 AT3G46020 44.156 77 43 0 124 200 8 84 5.84e-18 76.3
MS.gene60580.t1 AT5G54580 42.105 76 44 0 125 200 58 133 4.45e-17 75.5
MS.gene60580.t1 AT3G26420 44.156 77 43 0 124 200 8 84 9.85e-17 76.6
MS.gene60580.t1 AT5G47320 37.143 105 65 1 99 203 8 111 1.32e-16 75.5
MS.gene60580.t1 AT1G11430 32.990 97 65 0 3 99 80 176 8.32e-16 73.9
MS.gene60580.t1 AT5G61030 36.250 80 51 0 120 199 37 116 1.29e-15 74.3
MS.gene60580.t1 AT5G61030 36.250 80 51 0 120 199 37 116 1.29e-15 74.3
MS.gene60580.t1 AT1G74230 40.000 80 47 1 120 199 31 109 2.64e-14 70.5
MS.gene60580.t1 AT4G39260 37.179 78 49 0 124 201 7 84 4.94e-14 65.9
MS.gene60580.t1 AT2G46780 41.000 100 52 2 120 212 19 118 5.48e-14 70.1
MS.gene60580.t1 AT2G46780 41.000 100 52 2 120 212 19 118 5.48e-14 70.1
MS.gene60580.t1 AT5G59860 42.466 73 37 1 128 200 76 143 1.94e-13 65.9
MS.gene60580.t1 AT3G50670 37.179 78 49 0 123 200 138 215 2.07e-13 68.6
MS.gene60580.t1 AT2G37510 35.238 105 43 1 118 197 29 133 2.07e-13 65.9
MS.gene60580.t1 AT4G39260 37.662 77 48 0 124 200 7 83 2.11e-13 65.1
MS.gene60580.t1 AT2G22090 37.234 94 58 1 120 213 101 193 2.63e-13 68.2
MS.gene60580.t1 AT2G22090 37.234 94 58 1 120 213 101 193 2.75e-13 68.2
MS.gene60580.t1 AT4G39260 37.662 77 48 0 124 200 7 83 5.21e-13 65.1
MS.gene60580.t1 AT5G59865 45.783 83 45 0 124 206 27 109 2.45e-12 61.6
MS.gene60580.t1 AT3G15000 37.079 89 55 1 11 99 98 185 3.26e-12 65.1
MS.gene60580.t1 AT4G13860 36.986 73 46 0 124 196 4 76 3.86e-12 60.5
MS.gene60580.t1 AT3G08000 39.474 76 46 0 124 199 42 117 5.43e-12 61.6
MS.gene60580.t1 AT2G19380 31.915 94 63 1 115 208 400 492 9.09e-12 63.9
MS.gene60580.t1 AT3G15010 35.165 91 58 1 111 201 63 152 1.45e-11 63.2
MS.gene60580.t1 AT3G15010 35.165 91 58 1 111 201 63 152 1.45e-11 63.2
MS.gene60580.t1 AT2G21660 33.766 77 51 0 124 200 9 85 2.56e-11 60.1
MS.gene60580.t1 AT1G22910 36.667 90 53 1 124 209 14 103 3.39e-11 61.2
MS.gene60580.t1 AT2G21660 33.766 77 51 0 124 200 9 85 3.45e-11 60.1
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT3G56860 40.741 81 47 1 123 203 140 219 5.20e-11 61.6
MS.gene60580.t1 AT1G22910 36.667 90 53 1 124 209 14 103 5.32e-11 60.8
MS.gene60580.t1 AT2G22100 33.333 99 59 2 115 212 155 247 6.80e-11 61.2
MS.gene60580.t1 AT3G07810 32.773 119 67 3 100 212 83 194 6.86e-11 61.2
MS.gene60580.t1 AT3G07810 32.773 119 67 3 100 212 83 194 7.68e-11 61.2

Find 47 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCATGGAAAACCAATTT+TGG 0.112663 1.2:-69182836 MS.gene60580:CDS
TACTTACTTTCCCATGATTT+TGG 0.210808 1.2:+69182979 None:intergenic
TTCACAACAAAACCCAAAAT+TGG 0.220232 1.2:+69182823 None:intergenic
CATATGTTCAGGTAGAAATT+TGG 0.220805 1.2:-69181713 MS.gene60580:intron
TGACTTGCTTCAGAAGAATT+TGG 0.222835 1.2:+69181673 None:intergenic
TTGTGCGTGCAGATTATTAA+TGG 0.253086 1.2:-69181014 MS.gene60580:intron
CAATGCTTTGAATTTCCATT+AGG 0.287884 1.2:+69183079 None:intergenic
AATGCTTTGAATTTCCATTA+GGG 0.351537 1.2:+69183080 None:intergenic
CGCGCCGCATTTGAAGGCTT+TGG 0.352596 1.2:-69181382 MS.gene60580:CDS
TGGTCAAAATTTGAGCATAA+TGG 0.352734 1.2:+69182999 None:intergenic
TGTGTATATATCATGTTTCA+TGG 0.359894 1.2:-69182850 MS.gene60580:CDS
ATGGTCAACAATTTGAGCTT+TGG 0.361173 1.2:+69183018 None:intergenic
ATGTTGTTGTTGTTCCCTAA+TGG 0.373679 1.2:-69183094 MS.gene60580:CDS
TCAGACTCAAAATTGTCATC+TGG 0.388385 1.2:+69182645 None:intergenic
GCACGACCCTTGTTGTATCT+TGG 0.392813 1.2:+69180954 None:intergenic
ACCTTACGCGCCGCATTTGA+AGG 0.398224 1.2:-69181388 MS.gene60580:CDS
TTCTTATCAAGCAGATGGTC+TGG 0.401047 1.2:+69180932 None:intergenic
AAAGCATTGGGTTGTTAGAA+TGG 0.404538 1.2:-69183065 MS.gene60580:CDS
TAATGGAAATTCAAAGCATT+GGG 0.410201 1.2:-69183077 MS.gene60580:CDS
GATTGTGGTGCAGGTGTGCC+TGG 0.428716 1.2:-69182684 MS.gene60580:intron
AAATTCTTCTGAAGCAAGTC+AGG 0.439004 1.2:-69181671 MS.gene60580:CDS
GCCTTCAAATGCGGCGCGTA+AGG 0.441311 1.2:+69181387 None:intergenic
CTAATGGAAATTCAAAGCAT+TGG 0.444153 1.2:-69183078 MS.gene60580:CDS
TTCAATAAATGCATAACCCT+TGG 0.455487 1.2:+69181229 None:intergenic
CGACCCTTGTTGTATCTTGG+TGG 0.456934 1.2:+69180957 None:intergenic
TTATAGATAAAATTTCAAAA+AGG 0.469097 1.2:-69181253 MS.gene60580:CDS
GTATCTTGGTGGGGTAGTCT+TGG 0.475114 1.2:+69180968 None:intergenic
GACCCTTGTTGTATCTTGGT+GGG 0.480451 1.2:+69180958 None:intergenic
GTTGTTTGTTTGCAGTGAAA+AGG 0.483537 1.2:-69182882 MS.gene60580:intron
TCTGAAAATAAGGATTATGA+AGG 0.486651 1.2:-69182627 MS.gene60580:intron
CTCTTTGAGTGCTGCACTTG+CGG 0.491061 1.2:+69181190 None:intergenic
TATTAATGGCTGGATGATAG+TGG 0.526032 1.2:-69181000 MS.gene60580:CDS
GGCTTTGGTGAGCTTGTTGA+AGG 0.526097 1.2:-69181367 MS.gene60580:intron
ACCCTTGTTGTATCTTGGTG+GGG 0.547772 1.2:+69180959 None:intergenic
TTGGTAACAACACCAACAGC+AGG 0.553041 1.2:+69183037 None:intergenic
TGCACTTGCGGCCTCCTCTG+TGG 0.559303 1.2:+69181202 None:intergenic
GCAGCACTCAAAGAGATGAA+TGG 0.574975 1.2:-69181182 MS.gene60580:CDS
GGCTGAACAGACAAGACACC+AGG 0.582996 1.2:+69182666 None:intergenic
GCGTGCAGATTATTAATGGC+TGG 0.585212 1.2:-69181010 MS.gene60580:intron
GATTGTGCACATGAGCTAGC+TGG 0.605037 1.2:-69182791 MS.gene60580:intron
CTCACCAAAGCCTTCAAATG+CGG 0.607563 1.2:+69181378 None:intergenic
TACCCCACCAAGATACAACA+AGG 0.648898 1.2:-69180961 MS.gene60580:CDS
TATTGAATACACCACAGAGG+AGG 0.649244 1.2:-69181213 MS.gene60580:CDS
AGAATGGATAAACCTGCTGT+TGG 0.670334 1.2:-69183049 MS.gene60580:CDS
ACTCAAAGAGATGAATGGCA+AGG 0.678432 1.2:-69181177 MS.gene60580:intron
ACCCCACCAAGATACAACAA+GGG 0.762422 1.2:-69180960 MS.gene60580:CDS
ATTTATTGAATACACCACAG+AGG 0.775447 1.2:-69181216 MS.gene60580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTATAAATTTACCT+AGG - chr1.2:69181478-69181497 MS.gene60580:intron 10.0%
!! ATAAATATATATGTATGTAT+TGG - chr1.2:69181941-69181960 MS.gene60580:intron 10.0%
!! TTATAGATAAAATTTCAAAA+AGG - chr1.2:69182779-69182798 MS.gene60580:intron 10.0%
!!! TTTTTTCTTTCTTTTTTATT+GGG - chr1.2:69181096-69181115 MS.gene60580:intron 10.0%
!!! TTTTTTTCTTTCTTTTTTAT+TGG - chr1.2:69181095-69181114 MS.gene60580:intron 10.0%
!! TGTGTTAATTTATATTTCAT+TGG - chr1.2:69181553-69181572 MS.gene60580:intron 15.0%
!! AATCATAATAGAAAGAAGTT+TGG - chr1.2:69182977-69182996 MS.gene60580:intron 20.0%
!! GAAGCATAAATAAATACTTT+GGG - chr1.2:69182541-69182560 MS.gene60580:intron 20.0%
!!! ACTGCTAATTTTAAAAATAC+AGG + chr1.2:69181976-69181995 None:intergenic 20.0%
!!! CGCTTTTACTAATAAATAAA+TGG - chr1.2:69182734-69182753 MS.gene60580:intron 20.0%
!!! TAATTCAAACTTTGAAACAA+AGG + chr1.2:69181287-69181306 None:intergenic 20.0%
! AAAATATCATCCTAGATACA+AGG + chr1.2:69181534-69181553 None:intergenic 25.0%
! AAAATTTCAAAAAGGTCCAA+GGG - chr1.2:69182787-69182806 MS.gene60580:intron 25.0%
! AATGTGTGGAATTTACAAAA+CGG + chr1.2:69181435-69181454 None:intergenic 25.0%
! ATCTAAATTGAGCAATCAAT+TGG + chr1.2:69181877-69181896 None:intergenic 25.0%
! ATGTAGGAAGAAAAAGAATA+TGG - chr1.2:69182947-69182966 MS.gene60580:intron 25.0%
! TAAAATTTCAAAAAGGTCCA+AGG - chr1.2:69182786-69182805 MS.gene60580:intron 25.0%
! TCATACTTCATTGACATAAA+TGG - chr1.2:69182067-69182086 MS.gene60580:intron 25.0%
! TCTGAAAATAAGGATTATGA+AGG - chr1.2:69181405-69181424 MS.gene60580:CDS 25.0%
! TGTAGGAAGAAAAAGAATAT+GGG - chr1.2:69182948-69182967 MS.gene60580:intron 25.0%
! TGTGTATATATCATGTTTCA+TGG - chr1.2:69181182-69181201 MS.gene60580:CDS 25.0%
!! AATGCTTTGAATTTCCATTA+GGG + chr1.2:69180955-69180974 None:intergenic 25.0%
!! ATATATGTATGTATTGGTGT+TGG - chr1.2:69181947-69181966 MS.gene60580:intron 25.0%
!! GGAAGCATAAATAAATACTT+TGG - chr1.2:69182540-69182559 MS.gene60580:intron 25.0%
!! TAATGGAAATTCAAAGCATT+GGG - chr1.2:69180955-69180974 MS.gene60580:CDS 25.0%
!! TTTCATGGAAAACCAATTTT+GGG - chr1.2:69181197-69181216 MS.gene60580:CDS 25.0%
!!! CAAATTTTGACCAAAATCAT+GGG - chr1.2:69181043-69181062 MS.gene60580:intron 25.0%
!!! CAATTTTGAGTCTGAAAATA+AGG - chr1.2:69181395-69181414 MS.gene60580:CDS 25.0%
!!! TCAAATTTTGACCAAAATCA+TGG - chr1.2:69181042-69181061 MS.gene60580:intron 25.0%
AAATCATGGGAAAGTAAGTA+AGG - chr1.2:69181056-69181075 MS.gene60580:intron 30.0%
AGTTATTTGTCTCTTGAACA+GGG - chr1.2:69182597-69182616 MS.gene60580:intron 30.0%
ATACCACATAACTTATACCT+AGG + chr1.2:69181498-69181517 None:intergenic 30.0%
ATTTATTGAATACACCACAG+AGG - chr1.2:69182816-69182835 MS.gene60580:CDS 30.0%
CATATGTTCAGGTAGAAATT+TGG - chr1.2:69182319-69182338 MS.gene60580:intron 30.0%
CTAATGGAAATTCAAAGCAT+TGG - chr1.2:69180954-69180973 MS.gene60580:CDS 30.0%
TATTAGCAAAAAGTTCCCAA+AGG + chr1.2:69181462-69181481 None:intergenic 30.0%
TGGTCAAAATTTGAGCATAA+TGG + chr1.2:69181036-69181055 None:intergenic 30.0%
TTACATGCATGAAAGAAAGA+TGG + chr1.2:69182886-69182905 None:intergenic 30.0%
TTACCTAGGTATAAGTTATG+TGG - chr1.2:69181492-69181511 MS.gene60580:intron 30.0%
TTCAATAAATGCATAACCCT+TGG + chr1.2:69182806-69182825 None:intergenic 30.0%
TTCACAACAAAACCCAAAAT+TGG + chr1.2:69181212-69181231 None:intergenic 30.0%
TTGATAGAAACTAGTTCAGA+AGG - chr1.2:69182091-69182110 MS.gene60580:intron 30.0%
! ACAAAGAAACTTTTTGTGAC+AGG - chr1.2:69182398-69182417 MS.gene60580:intron 30.0%
! ACTTTTATCTCCTATTCATC+TGG - chr1.2:69182467-69182486 MS.gene60580:intron 30.0%
! CAATGCTTTGAATTTCCATT+AGG + chr1.2:69180956-69180975 None:intergenic 30.0%
! GTTTCATGGAAAACCAATTT+TGG - chr1.2:69181196-69181215 MS.gene60580:CDS 30.0%
! TACTTACTTTCCCATGATTT+TGG + chr1.2:69181056-69181075 None:intergenic 30.0%
! TTTATGACTACGAGGTTTTA+AGG - chr1.2:69181713-69181732 MS.gene60580:intron 30.0%
!! TGATTTTAGTCCTTGTATCT+AGG - chr1.2:69181521-69181540 MS.gene60580:intron 30.0%
!!! ATGTTTTGACAGAAACTACT+TGG - chr1.2:69182188-69182207 MS.gene60580:intron 30.0%
ATGGTCAACAATTTGAGCTT+TGG + chr1.2:69181017-69181036 None:intergenic 35.0%
ATTCACTGTTCTCTTGTAGA+AGG - chr1.2:69182701-69182720 MS.gene60580:intron 35.0%
CAGTTATTTGTCTCTTGAAC+AGG - chr1.2:69182596-69182615 MS.gene60580:intron 35.0%
GAAGTAGTGATGATCAATGA+AGG - chr1.2:69181742-69181761 MS.gene60580:intron 35.0%
GTAAGAACATCCAGATGAAT+AGG + chr1.2:69182480-69182499 None:intergenic 35.0%
GTTGTTTGTTTGCAGTGAAA+AGG - chr1.2:69181150-69181169 MS.gene60580:intron 35.0%
TATTAATGGCTGGATGATAG+TGG - chr1.2:69183032-69183051 MS.gene60580:CDS 35.0%
TCAGACTCAAAATTGTCATC+TGG + chr1.2:69181390-69181409 None:intergenic 35.0%
TGTGTGAATTACTCTGTCAA+TGG - chr1.2:69182519-69182538 MS.gene60580:intron 35.0%
TTGTGCGTGCAGATTATTAA+TGG - chr1.2:69183018-69183037 MS.gene60580:CDS 35.0%
TTGTTGTGAACTTGTGATTG+TGG - chr1.2:69181333-69181352 MS.gene60580:intron 35.0%
! AATGCAATTTTGCTTTGTGC+TGG - chr1.2:69182906-69182925 MS.gene60580:intron 35.0%
! ATGTTGTTGTTGTTCCCTAA+TGG - chr1.2:69180938-69180957 MS.gene60580:CDS 35.0%
! ATTCCACACATTTTTGCCTT+TGG - chr1.2:69181443-69181462 MS.gene60580:intron 35.0%
! TTCCACACATTTTTGCCTTT+GGG - chr1.2:69181444-69181463 MS.gene60580:intron 35.0%
!! AAAGCATTGGGTTGTTAGAA+TGG - chr1.2:69180967-69180986 MS.gene60580:CDS 35.0%
!! AAATTCTTCTGAAGCAAGTC+AGG - chr1.2:69182361-69182380 MS.gene60580:intron 35.0%
!! ACGACATAACATTGATTCTG+AGG - chr1.2:69182428-69182447 MS.gene60580:intron 35.0%
!! GTTTTGTTGTGAACTTGATG+AGG - chr1.2:69181219-69181238 MS.gene60580:CDS 35.0%
!! TGACTTGCTTCAGAAGAATT+TGG + chr1.2:69182362-69182381 None:intergenic 35.0%
ACTCAAAGAGATGAATGGCA+AGG - chr1.2:69182855-69182874 MS.gene60580:CDS 40.0%
AGAATGGATAAACCTGCTGT+TGG - chr1.2:69180983-69181002 MS.gene60580:CDS 40.0%
ATGAAGCACAGACTTTGACA+CGG + chr1.2:69182015-69182034 None:intergenic 40.0%
CCTGAACATATGTAGTTAGC+AGG + chr1.2:69182311-69182330 None:intergenic 40.0%
CCTGCTAACTACATATGTTC+AGG - chr1.2:69182308-69182327 MS.gene60580:intron 40.0%
TATTGAATACACCACAGAGG+AGG - chr1.2:69182819-69182838 MS.gene60580:CDS 40.0%
TTCCCAAAGGCAAAAATGTG+TGG + chr1.2:69181449-69181468 None:intergenic 40.0%
! CTGACACTTTTATGACTACG+AGG - chr1.2:69181705-69181724 MS.gene60580:CDS 40.0%
! GGAGAACATTTTTGCTTGCA+GGG - chr1.2:69182562-69182581 MS.gene60580:intron 40.0%
ACCCCACCAAGATACAACAA+GGG - chr1.2:69183072-69183091 MS.gene60580:CDS 45.0%
AGACACTTGTCTAACACGTG+TGG + chr1.2:69181630-69181649 None:intergenic 45.0%
CTCACCAAAGCCTTCAAATG+CGG + chr1.2:69182657-69182676 None:intergenic 45.0%
CTGCTTCGTGATTGTCATGT+AGG - chr1.2:69182931-69182950 MS.gene60580:intron 45.0%
GCAGCACTCAAAGAGATGAA+TGG - chr1.2:69182850-69182869 MS.gene60580:CDS 45.0%
GCGTGCAGATTATTAATGGC+TGG - chr1.2:69183022-69183041 MS.gene60580:CDS 45.0%
TACCCCACCAAGATACAACA+AGG - chr1.2:69183071-69183090 MS.gene60580:CDS 45.0%
TGAACTTGTGATTGTGGTGC+AGG - chr1.2:69181339-69181358 MS.gene60580:intron 45.0%
! ACCCTTGTTGTATCTTGGTG+GGG + chr1.2:69183076-69183095 None:intergenic 45.0%
! GACCCTTGTTGTATCTTGGT+GGG + chr1.2:69183077-69183096 None:intergenic 45.0%
! GGGAGAACATTTTTGCTTGC+AGG - chr1.2:69182561-69182580 MS.gene60580:intron 45.0%
! TTGGTAACAACACCAACAGC+AGG + chr1.2:69180998-69181017 None:intergenic 45.0%
CTTGTCTAACACGTGTGGCA+CGG + chr1.2:69181625-69181644 None:intergenic 50.0%
GATTGTGCACATGAGCTAGC+TGG - chr1.2:69181241-69181260 MS.gene60580:CDS 50.0%
GTATCTTGGTGGGGTAGTCT+TGG + chr1.2:69183067-69183086 None:intergenic 50.0%
TTGTCTAACACGTGTGGCAC+GGG + chr1.2:69181624-69181643 None:intergenic 50.0%
! CGACCCTTGTTGTATCTTGG+TGG + chr1.2:69183078-69183097 None:intergenic 50.0%
! CTCTTTGAGTGCTGCACTTG+CGG + chr1.2:69182845-69182864 None:intergenic 50.0%
! GCACGACCCTTGTTGTATCT+TGG + chr1.2:69183081-69183100 None:intergenic 50.0%
!! GGCTTTGGTGAGCTTGTTGA+AGG - chr1.2:69182665-69182684 MS.gene60580:CDS 50.0%
ACCTTACGCGCCGCATTTGA+AGG - chr1.2:69182644-69182663 MS.gene60580:CDS 55.0%
CACAGACTTTGACACGGACG+TGG + chr1.2:69182009-69182028 None:intergenic 55.0%
CTCTGGCATTAAGCGTGTCC+CGG - chr1.2:69181589-69181608 MS.gene60580:intron 55.0%
GGCTGAACAGACAAGACACC+AGG + chr1.2:69181369-69181388 None:intergenic 55.0%
! ACGCTTAATGCCAGAGGCGT+CGG + chr1.2:69181585-69181604 None:intergenic 55.0%
AACACGTGTGGCACGGGTGT+CGG + chr1.2:69181618-69181637 None:intergenic 60.0%
CGCGCCGCATTTGAAGGCTT+TGG - chr1.2:69182650-69182669 MS.gene60580:CDS 60.0%
CGGGACACGCTTAATGCCAG+AGG + chr1.2:69181591-69181610 None:intergenic 60.0%
GATTGTGGTGCAGGTGTGCC+TGG - chr1.2:69181348-69181367 MS.gene60580:intron 60.0%
GCCTTCAAATGCGGCGCGTA+AGG + chr1.2:69182648-69182667 None:intergenic 60.0%
TGCACTTGCGGCCTCCTCTG+TGG + chr1.2:69182833-69182852 None:intergenic 65.0%
TTGGTCAGCTCCGACGCCTC+TGG - chr1.2:69181572-69181591 MS.gene60580:intron 65.0%
!! GTGGCACGGGTGTCGGTCAC+CGG + chr1.2:69181611-69181630 None:intergenic 70.0%
!! TGGCACGGGTGTCGGTCACC+GGG + chr1.2:69181610-69181629 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 69180938 69183116 69180938 ID=MS.gene60580
chr1.2 mRNA 69180938 69183116 69180938 ID=MS.gene60580.t1;Parent=MS.gene60580
chr1.2 exon 69182986 69183116 69182986 ID=MS.gene60580.t1.exon1;Parent=MS.gene60580.t1
chr1.2 CDS 69182986 69183116 69182986 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69182792 69182889 69182792 ID=MS.gene60580.t1.exon2;Parent=MS.gene60580.t1
chr1.2 CDS 69182792 69182889 69182792 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69182628 69182693 69182628 ID=MS.gene60580.t1.exon3;Parent=MS.gene60580.t1
chr1.2 CDS 69182628 69182693 69182628 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69181635 69181724 69181635 ID=MS.gene60580.t1.exon4;Parent=MS.gene60580.t1
chr1.2 CDS 69181635 69181724 69181635 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69181368 69181436 69181368 ID=MS.gene60580.t1.exon5;Parent=MS.gene60580.t1
chr1.2 CDS 69181368 69181436 69181368 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69181178 69181284 69181178 ID=MS.gene60580.t1.exon6;Parent=MS.gene60580.t1
chr1.2 CDS 69181178 69181284 69181178 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
chr1.2 exon 69180938 69181024 69180938 ID=MS.gene60580.t1.exon7;Parent=MS.gene60580.t1
chr1.2 CDS 69180938 69181024 69180938 ID=cds.MS.gene60580.t1;Parent=MS.gene60580.t1
Gene Sequence

>MS.gene60580

ATGTTGTTGTTGTTCCCTAATGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGCTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGACCATTATGCTCAAATTTTGACCAAAATCATGGGAAAGTAAGTAAGGACATTCAAATCTACTTTTTTTTTCTTTCTTTTTTATTGGGTTTCTTGTTTTCTTTGAAATTTGATGACAATGTTGTTTGTTTGCAGTGAAAAGGATGCACAAATGTGTATATATCATGTTTCATGGAAAACCAATTTTGGGTTTTGTTGTGAACTTGATGAGGATTGTGCACATGAGCTAGCTGGTTAGCTTTGTAGATTCTTAACCTTTGTTTCAAAGTTTGAATTAAACATGTTTAATGAAATTTGAAATGCTTGTTGTGAACTTGTGATTGTGGTGCAGGTGTGCCTGGTGTCTTGTCTGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAGGATTATGAAGGTTTGCCGTTTTGTAAATTCCACACATTTTTGCCTTTGGGAACTTTTTGCTAATATATTATAAATTTACCTAGGTATAAGTTATGTGGTATATGTGATTTTAGTCCTTGTATCTAGGATGATATTTTGTGTTAATTTATATTTCATTGGTCAGCTCCGACGCCTCTGGCATTAAGCGTGTCCCGGTGACCGACACCCGTGCCACACGTGTTAGACAAGTGTCTCAAAATAAACTTTTTCTTTTCTTTTGACACACTTTTACACTACTTAGACACATCTCTGACACTTTTATGACTACGAGGTTTTAAGGTATGTCGAAGTAGTGATGATCAATGAAGGAGTTGTAGACATTAAATTCGATTACGTCATTTTTAACTTTTTAGTATAGTAGATTGATGAATGAGTAGAAAAATTATCATATTTTGTTTACGAACATTTTTGCATTGTGCCAATTGATTGCTCAATTTAGATCTTTTACAGATAATGTTCAAATTTTATTTAATTATAATAAATAAATAAATATATATGTATGTATTGGTGTTGGTGTCCTGTATTTTTAAAATTAGCAGTGTCGACGTGTCCACGTCCGTGTCAAAGTCTGTGCTTCATTCAGCTCTTTACAGTTTTTATTATTTTGTAGTTCATACTTCATTGACATAAATGGTTTGATAGAAACTAGTTCAGAAGGAGAAAACTATATTAAAGTAGCAATCTACTGTAATATAACATTTATCTTATATTAAAGTAGAAGCTAGTTCGCAAATGTTTTGACAGAAACTACTTGGTATGCATTTTCAATGATGATATGATTCTCACAGACATTGAATTATGCTTGTTCATGATTTTCTACTTTCTGCTGTTAGTAACTTTTTTCTTTGATTTCCTGCTAACTACATATGTTCAGGTAGAAATTTGGAAAATAGTCTGAATATGCCAAATTCTTCTGAAGCAAGTCAGGAAGCTTCTGTGAAAACAAAGAAACTTTTTGTGACAGGTATTCTCACGACATAACATTGATTCTGAGGTGTAGAGCATGTTTTAACTTTTATCTCCTATTCATCTGGATGTTCTTACGACTATTTAACTAAAATTGTGTGTGAATTACTCTGTCAATGGAAGCATAAATAAATACTTTGGGAGAACATTTTTGCTTGCAGGGCTATCATTTGACAGTTATTTGTCTCTTGAACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGCGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGGTAGTTTCAACTTCATTCACTGTTCTCTTGTAGAAGGCTTCTGTCTGCGCTTTTACTAATAAATAAATGGTTATGTTTGACAGTTAAAGTTATTATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCCGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGGTAGATCCATCTTTCTTTCATGCATGTAAAATGCAATTTTGCTTTGTGCTGGTTCTGCTTCGTGATTGTCATGTAGGAAGAAAAAGAATATGGGTTTATAAATCATAATAGAAAGAAGTTTGGTAGTCGTTAACGATTTTATTGTGCGTGCAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACCCCACCAAGATACAACAAGGGTCGTGCCAGACCATCTGCTTGA
Protein sequence

>MS.gene60580.t1

MLLLFPNGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAHELAGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNKGRARPSA