Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60705.t1 | XP_003592069.1 | 99.1 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 6.90E-241 | 842.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60705.t1 | Q9SB58 | 66.0 | 424 | 118 | 8 | 4 | 421 | 3 | 406 | 4.5e-156 | 552.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60705.t1 | G7IBW6 | 99.1 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 5.0e-241 | 842.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60705 | MS.gene88846 | PPI |
| MS.gene33918 | MS.gene60705 | PPI |
| MS.gene60766 | MS.gene60705 | PPI |
| MS.gene60705 | MS.gene006074 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60705.t1 | MTR_1g098390 | 99.052 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 0.0 | 870 |
| MS.gene60705.t1 | MTR_6g038020 | 80.000 | 410 | 76 | 4 | 14 | 419 | 12 | 419 | 0.0 | 669 |
| MS.gene60705.t1 | MTR_6g038020 | 80.196 | 409 | 75 | 4 | 15 | 419 | 16 | 422 | 0.0 | 669 |
| MS.gene60705.t1 | MTR_6g033315 | 54.839 | 403 | 169 | 8 | 6 | 404 | 21 | 414 | 2.88e-149 | 431 |
| MS.gene60705.t1 | MTR_7g083480 | 55.283 | 407 | 159 | 7 | 5 | 404 | 20 | 410 | 2.32e-140 | 408 |
| MS.gene60705.t1 | MTR_3g098840 | 48.387 | 403 | 178 | 6 | 5 | 403 | 21 | 397 | 3.55e-128 | 377 |
| MS.gene60705.t1 | MTR_7g088350 | 50.147 | 341 | 151 | 5 | 1 | 334 | 21 | 349 | 4.89e-115 | 344 |
| MS.gene60705.t1 | MTR_7g088360 | 53.115 | 305 | 132 | 4 | 1 | 301 | 25 | 322 | 9.29e-111 | 332 |
| MS.gene60705.t1 | MTR_4g023760 | 27.365 | 296 | 183 | 11 | 30 | 317 | 24 | 295 | 2.49e-24 | 102 |
| MS.gene60705.t1 | MTR_4g021795 | 31.000 | 200 | 110 | 7 | 67 | 261 | 52 | 228 | 9.67e-21 | 92.4 |
| MS.gene60705.t1 | MTR_7g114080 | 35.507 | 138 | 79 | 2 | 136 | 263 | 160 | 297 | 4.86e-19 | 88.6 |
| MS.gene60705.t1 | MTR_1g094610 | 33.333 | 180 | 81 | 5 | 88 | 261 | 69 | 215 | 5.04e-18 | 84.0 |
| MS.gene60705.t1 | MTR_7g114080 | 33.333 | 147 | 79 | 2 | 136 | 263 | 160 | 306 | 8.70e-18 | 85.1 |
| MS.gene60705.t1 | MTR_5g023230 | 34.225 | 187 | 100 | 6 | 133 | 309 | 145 | 318 | 1.37e-17 | 83.6 |
| MS.gene60705.t1 | MTR_5g023230 | 34.225 | 187 | 100 | 6 | 133 | 309 | 165 | 338 | 1.71e-17 | 83.6 |
| MS.gene60705.t1 | MTR_4g116160 | 35.345 | 116 | 64 | 2 | 70 | 185 | 321 | 425 | 1.21e-16 | 82.4 |
| MS.gene60705.t1 | MTR_4g092760 | 34.426 | 122 | 69 | 2 | 69 | 190 | 307 | 417 | 1.32e-16 | 82.4 |
| MS.gene60705.t1 | MTR_4g116160 | 35.345 | 116 | 64 | 2 | 70 | 185 | 148 | 252 | 1.65e-16 | 81.6 |
| MS.gene60705.t1 | MTR_4g116160 | 35.345 | 116 | 64 | 2 | 70 | 185 | 321 | 425 | 2.19e-16 | 81.3 |
| MS.gene60705.t1 | MTR_7g114080 | 33.562 | 146 | 70 | 3 | 136 | 258 | 160 | 301 | 4.73e-16 | 79.0 |
| MS.gene60705.t1 | MTR_4g092760 | 34.821 | 112 | 62 | 2 | 79 | 190 | 228 | 328 | 1.20e-15 | 79.0 |
| MS.gene60705.t1 | MTR_7g118050 | 29.730 | 222 | 117 | 10 | 92 | 303 | 97 | 289 | 4.94e-15 | 75.9 |
| MS.gene60705.t1 | MTR_1g112830 | 30.000 | 220 | 114 | 8 | 70 | 278 | 415 | 605 | 4.97e-15 | 77.4 |
| MS.gene60705.t1 | MTR_7g114080 | 54.237 | 59 | 27 | 0 | 136 | 194 | 160 | 218 | 8.56e-15 | 75.5 |
| MS.gene60705.t1 | MTR_7g118050 | 36.364 | 88 | 40 | 1 | 92 | 179 | 97 | 168 | 1.39e-13 | 70.1 |
| MS.gene60705.t1 | MTR_5g023230 | 41.270 | 63 | 37 | 0 | 133 | 195 | 165 | 227 | 1.38e-12 | 67.8 |
| MS.gene60705.t1 | MTR_1g085980 | 30.075 | 133 | 84 | 3 | 135 | 258 | 155 | 287 | 4.21e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60705.t1 | AT4G24630 | 65.882 | 425 | 119 | 8 | 3 | 421 | 2 | 406 | 0.0 | 571 |
| MS.gene60705.t1 | AT5G50020 | 61.882 | 425 | 148 | 5 | 1 | 421 | 30 | 444 | 0.0 | 530 |
| MS.gene60705.t1 | AT5G50020 | 62.175 | 423 | 146 | 5 | 3 | 421 | 2 | 414 | 0.0 | 530 |
| MS.gene60705.t1 | AT5G50020 | 60.757 | 423 | 145 | 6 | 3 | 421 | 2 | 407 | 1.48e-180 | 509 |
| MS.gene60705.t1 | AT3G26935 | 54.054 | 407 | 170 | 8 | 5 | 404 | 19 | 415 | 6.19e-145 | 420 |
| MS.gene60705.t1 | AT5G41060 | 51.485 | 404 | 178 | 7 | 5 | 406 | 19 | 406 | 2.04e-135 | 395 |
| MS.gene60705.t1 | AT5G41060 | 50.636 | 393 | 176 | 7 | 16 | 406 | 15 | 391 | 4.33e-128 | 375 |
| MS.gene60705.t1 | AT3G48760 | 48.662 | 411 | 185 | 7 | 5 | 402 | 28 | 425 | 7.83e-128 | 378 |
| MS.gene60705.t1 | AT3G56930 | 52.071 | 338 | 141 | 6 | 4 | 323 | 9 | 343 | 1.69e-115 | 346 |
| MS.gene60705.t1 | AT5G41060 | 50.000 | 344 | 155 | 6 | 63 | 404 | 9 | 337 | 6.64e-110 | 327 |
| MS.gene60705.t1 | AT5G41060 | 50.000 | 344 | 155 | 6 | 63 | 404 | 9 | 337 | 6.64e-110 | 327 |
| MS.gene60705.t1 | AT5G05070 | 44.041 | 386 | 186 | 8 | 5 | 385 | 37 | 397 | 3.03e-103 | 313 |
| MS.gene60705.t1 | AT2G40990 | 47.006 | 334 | 165 | 5 | 4 | 334 | 27 | 351 | 3.96e-100 | 305 |
| MS.gene60705.t1 | AT3G56920 | 50.831 | 301 | 138 | 4 | 4 | 301 | 9 | 302 | 6.32e-98 | 296 |
| MS.gene60705.t1 | AT3G56930 | 48.852 | 305 | 110 | 4 | 4 | 301 | 9 | 274 | 1.69e-95 | 294 |
| MS.gene60705.t1 | AT3G04970 | 30.942 | 223 | 105 | 7 | 60 | 263 | 27 | 219 | 5.62e-19 | 87.4 |
| MS.gene60705.t1 | AT3G60800 | 27.509 | 269 | 158 | 9 | 30 | 283 | 24 | 270 | 9.67e-19 | 86.7 |
| MS.gene60705.t1 | AT3G09320 | 30.857 | 175 | 94 | 5 | 87 | 258 | 66 | 216 | 2.36e-18 | 85.1 |
| MS.gene60705.t1 | AT3G04970 | 33.987 | 153 | 82 | 2 | 136 | 269 | 160 | 312 | 4.63e-18 | 85.9 |
| MS.gene60705.t1 | AT3G51390 | 35.079 | 191 | 99 | 5 | 130 | 309 | 156 | 332 | 2.04e-17 | 83.6 |
| MS.gene60705.t1 | AT3G51390 | 35.079 | 191 | 99 | 5 | 130 | 309 | 151 | 327 | 2.42e-17 | 83.2 |
| MS.gene60705.t1 | AT5G04270 | 29.630 | 189 | 98 | 5 | 73 | 260 | 57 | 211 | 3.07e-17 | 81.6 |
| MS.gene60705.t1 | AT4G00840 | 28.464 | 267 | 150 | 9 | 31 | 283 | 16 | 255 | 8.45e-17 | 80.9 |
| MS.gene60705.t1 | AT2G14255 | 25.234 | 214 | 138 | 4 | 75 | 278 | 314 | 515 | 6.09e-16 | 80.1 |
| MS.gene60705.t1 | AT3G04970 | 34.507 | 142 | 74 | 2 | 136 | 258 | 160 | 301 | 1.61e-15 | 77.4 |
| MS.gene60705.t1 | AT4G00840 | 30.380 | 158 | 82 | 4 | 31 | 179 | 16 | 154 | 4.91e-15 | 74.3 |
| MS.gene60705.t1 | AT5G20350 | 26.136 | 264 | 145 | 11 | 65 | 305 | 311 | 547 | 1.22e-14 | 76.3 |
| MS.gene60705.t1 | AT4G22750 | 28.992 | 238 | 126 | 12 | 65 | 286 | 53 | 263 | 1.86e-14 | 73.9 |
| MS.gene60705.t1 | AT1G69420 | 32.824 | 131 | 79 | 2 | 137 | 258 | 164 | 294 | 6.66e-14 | 73.9 |
| MS.gene60705.t1 | AT1G69420 | 32.824 | 131 | 79 | 2 | 137 | 258 | 164 | 294 | 6.66e-14 | 73.9 |
| MS.gene60705.t1 | AT4G15080 | 28.244 | 131 | 85 | 3 | 137 | 258 | 175 | 305 | 3.62e-11 | 65.5 |
| MS.gene60705.t1 | AT4G15080 | 28.244 | 131 | 85 | 3 | 137 | 258 | 175 | 305 | 3.62e-11 | 65.5 |
| MS.gene60705.t1 | AT4G01730 | 27.820 | 133 | 87 | 1 | 135 | 258 | 157 | 289 | 8.51e-11 | 64.3 |
Find 102 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCCTCAAGGAACAATTTC+AGG | 0.201284 | 1.2:-71040516 | MS.gene60705:CDS |
| TTGGGAGGGAGGTTGGTATT+TGG | 0.234568 | 1.2:-71042235 | MS.gene60705:CDS |
| TGACCTGGTTTGTGCTTATA+AGG | 0.264898 | 1.2:+71040973 | None:intergenic |
| TGGTTTGTTGGTGGACTAAC+TGG | 0.265761 | 1.2:-71041008 | MS.gene60705:CDS |
| TCACAATATTTCACCTTTAC+AGG | 0.267079 | 1.2:+71041433 | None:intergenic |
| CTGATGGATAATAATGATAT+TGG | 0.268744 | 1.2:-71041101 | MS.gene60705:CDS |
| CTTCTTCATGTTTGTTTCTT+CGG | 0.274672 | 1.2:-71041177 | MS.gene60705:CDS |
| CATTACTTCCTTTCCAAACT+TGG | 0.299890 | 1.2:+71043769 | None:intergenic |
| TTCATCTCTCTGTGGTTTGT+TGG | 0.342371 | 1.2:-71041020 | MS.gene60705:CDS |
| GGACGTGAACCAGATGATTT+AGG | 0.344379 | 1.2:-71040442 | MS.gene60705:CDS |
| CGAGACATAGTTTCTGCTTT+CGG | 0.349681 | 1.2:+71040153 | None:intergenic |
| AATACACAAAAGATGATAAC+TGG | 0.357912 | 1.2:+71042166 | None:intergenic |
| CAAAGCGCGTGTACCAAGTT+TGG | 0.358764 | 1.2:-71043782 | MS.gene60705:CDS |
| CGCTGACTACAGTCATTTCC+CGG | 0.363776 | 1.2:-71040465 | MS.gene60705:CDS |
| TCATAACGAAACTCTTCTTC+TGG | 0.372940 | 1.2:+71041532 | None:intergenic |
| GCCCTGAAATTGTTCCTTGA+GGG | 0.375186 | 1.2:+71040514 | None:intergenic |
| TTCAACACAGTTGTTGCATA+TGG | 0.381975 | 1.2:+71041369 | None:intergenic |
| GTTGGGAAAGAAGTGGAAAC+TGG | 0.383128 | 1.2:-71040213 | MS.gene60705:CDS |
| ATCGGGTTCAGCTGTATTAT+CGG | 0.386813 | 1.2:+71040294 | None:intergenic |
| GCTTTCGGTGACATTTGAAT+TGG | 0.392459 | 1.2:+71040168 | None:intergenic |
| ATCTGATGACAAAATTGAAT+CGG | 0.397612 | 1.2:+71040276 | None:intergenic |
| ATCTCTCTGTGGTTTGTTGG+TGG | 0.400037 | 1.2:-71041017 | MS.gene60705:CDS |
| TGGTATTTGGACCTGATGCC+AGG | 0.402430 | 1.2:-71042222 | MS.gene60705:CDS |
| GCCATTAAAATCACAGATGC+AGG | 0.405346 | 1.2:+71041050 | None:intergenic |
| AATCATCTGGTTCACGTCCC+CGG | 0.425156 | 1.2:+71040446 | None:intergenic |
| AAGGCTTGGTGTTTGTTGTC+CGG | 0.437240 | 1.2:+71041495 | None:intergenic |
| TGATGGATAATAATGATATT+GGG | 0.439446 | 1.2:-71041100 | MS.gene60705:CDS |
| ATTCATATTGGGAGGGAGGT+TGG | 0.442239 | 1.2:-71042242 | MS.gene60705:CDS |
| TGATGCTAGGCACTCGAGTT+GGG | 0.442268 | 1.2:-71040230 | MS.gene60705:CDS |
| TATTTGTAGCAAGGCATCTT+CGG | 0.448925 | 1.2:-71042147 | MS.gene60705:CDS |
| CGATCTCCACCTAAATCATC+TGG | 0.458038 | 1.2:+71040433 | None:intergenic |
| TTTACTTCTGCACGTGATCC+GGG | 0.459773 | 1.2:-71041580 | MS.gene60705:CDS |
| GTTGAAGATGATCTAGATAT+CGG | 0.459943 | 1.2:-71040400 | MS.gene60705:CDS |
| ATAAGCAGGGACCTGGCATC+AGG | 0.465465 | 1.2:+71042211 | None:intergenic |
| GCCCTCAAGGAACAATTTCA+GGG | 0.468192 | 1.2:-71040515 | MS.gene60705:CDS |
| TCTAGATCATCTTCAACCTT+AGG | 0.476598 | 1.2:+71040406 | None:intergenic |
| ATCATCTGGTTCACGTCCCC+GGG | 0.476849 | 1.2:+71040447 | None:intergenic |
| CGATCACCATTGCCCGTGGG+TGG | 0.480206 | 1.2:-71041341 | MS.gene60705:CDS |
| GACGAGGACATTCAGAATAG+AGG | 0.501548 | 1.2:-71040331 | MS.gene60705:CDS |
| GGTCAATGGCCTTCCTGTAA+AGG | 0.502557 | 1.2:-71041446 | MS.gene60705:CDS |
| CCGTGGGTGGGCCAATGCAT+CGG | 0.511747 | 1.2:-71041328 | MS.gene60705:CDS |
| TCAACGACAGAGTGATAAGC+AGG | 0.512865 | 1.2:+71042197 | None:intergenic |
| CTGATGCTAGGCACTCGAGT+TGG | 0.513944 | 1.2:-71040231 | MS.gene60705:CDS |
| ATCGTACCAGACCGATGCAT+TGG | 0.515932 | 1.2:+71041317 | None:intergenic |
| GGTGGGCCAATGCATCGGTC+TGG | 0.516328 | 1.2:-71041323 | MS.gene60705:intron |
| AGGTGGAGATCGCCGTCCTA+AGG | 0.518925 | 1.2:-71040422 | MS.gene60705:CDS |
| CGATGCATTGGCCCACCCAC+GGG | 0.524791 | 1.2:+71041329 | None:intergenic |
| ATTGGCCCACCCACGGGCAA+TGG | 0.526654 | 1.2:+71041335 | None:intergenic |
| TCTGATGACAAAATTGAATC+GGG | 0.527605 | 1.2:+71040277 | None:intergenic |
| TCGGGTTCAGCTGTATTATC+GGG | 0.530699 | 1.2:+71040295 | None:intergenic |
| ACAAAAGAAGTAATGGTCAA+TGG | 0.531295 | 1.2:-71041460 | MS.gene60705:CDS |
| GATCACCATTGCCCGTGGGT+GGG | 0.532743 | 1.2:-71041340 | MS.gene60705:CDS |
| TCCGATACAGAGCTGATGGC+AGG | 0.533199 | 1.2:-71040600 | MS.gene60705:CDS |
| GCTGACTACAGTCATTTCCC+GGG | 0.535809 | 1.2:-71040464 | MS.gene60705:CDS |
| GTTTCGATCACCATTGCCCG+TGG | 0.536012 | 1.2:-71041345 | MS.gene60705:CDS |
| TGATATTGGGACGGTGTGGA+AGG | 0.541635 | 1.2:-71041087 | MS.gene60705:CDS |
| GTTCGTGGGAACTGAAGGCT+TGG | 0.542418 | 1.2:+71041481 | None:intergenic |
| TCCTGCCATCAGCTCTGTAT+CGG | 0.544839 | 1.2:+71040599 | None:intergenic |
| CCCACGAACAAAAGAAGTAA+TGG | 0.547877 | 1.2:-71041467 | MS.gene60705:CDS |
| CTTGATGTAAAATGCTGAGA+AGG | 0.551418 | 1.2:+71041127 | None:intergenic |
| TGCAGAAATTCATATTGGGA+GGG | 0.554399 | 1.2:-71042249 | MS.gene60705:intron |
| TAACGAAACTCTTCTTCTGG+TGG | 0.560200 | 1.2:+71041535 | None:intergenic |
| CTTATTGTTTCATCTCTCTG+TGG | 0.560672 | 1.2:-71041028 | MS.gene60705:CDS |
| TTGCAGAAATTCATATTGGG+AGG | 0.560897 | 1.2:-71042250 | MS.gene60705:intron |
| TATGAATCTTCTACAGTAGC+CGG | 0.561324 | 1.2:-71041514 | MS.gene60705:CDS |
| AACTTCCGATACAGAGCTGA+TGG | 0.564513 | 1.2:-71040604 | MS.gene60705:CDS |
| CCGATGCATTGGCCCACCCA+CGG | 0.568906 | 1.2:+71041328 | None:intergenic |
| CCATTAAAATCACAGATGCA+GGG | 0.572375 | 1.2:+71041051 | None:intergenic |
| CCACAATACGATCTGATGCT+AGG | 0.575400 | 1.2:-71040243 | MS.gene60705:CDS |
| ACGAGGACATTCAGAATAGA+GGG | 0.578546 | 1.2:-71040330 | MS.gene60705:CDS |
| AATATTTCACCTTTACAGGA+AGG | 0.578975 | 1.2:+71041437 | None:intergenic |
| CAGAAACTATGTCTCGTCAA+AGG | 0.579025 | 1.2:-71040146 | MS.gene60705:CDS |
| GCACAGAAATAAAGCCCTCA+AGG | 0.581420 | 1.2:-71040528 | MS.gene60705:CDS |
| CAGAGTGATAAGCAGGGACC+TGG | 0.584523 | 1.2:+71042204 | None:intergenic |
| TCTGGTGGATGTGAACTCCT+CGG | 0.586150 | 1.2:+71041550 | None:intergenic |
| AGCAATGCGAGCAACGAGGA+GGG | 0.589494 | 1.2:+71041392 | None:intergenic |
| GAACTCCTCGGAATGATACC+CGG | 0.589965 | 1.2:+71041562 | None:intergenic |
| AGAAATTCATATTGGGAGGG+AGG | 0.591649 | 1.2:-71042246 | MS.gene60705:CDS |
| CGCGTGTACCAAGTTTGGAA+AGG | 0.595301 | 1.2:-71043777 | MS.gene60705:CDS |
| TATTGAAGATATCACAGCGT+AGG | 0.599952 | 1.2:-71040369 | MS.gene60705:CDS |
| AAACAAACATGAAGAAGTAA+CGG | 0.600646 | 1.2:+71041183 | None:intergenic |
| AGCCCTGAAATTGTTCCTTG+AGG | 0.605131 | 1.2:+71040513 | None:intergenic |
| TTGGGAAAGAAGTGGAAACT+GGG | 0.614418 | 1.2:-71040212 | MS.gene60705:CDS |
| CACTCGAGTTGGGAAAGAAG+TGG | 0.619470 | 1.2:-71040220 | MS.gene60705:CDS |
| CCTAGCATCAGATCGTATTG+TGG | 0.626014 | 1.2:+71040243 | None:intergenic |
| AAGTAAAACAGAGAAGCACC+AGG | 0.628755 | 1.2:+71041596 | None:intergenic |
| CGTGAACCAGATGATTTAGG+TGG | 0.634926 | 1.2:-71040439 | MS.gene60705:CDS |
| GAGCAATGCGAGCAACGAGG+AGG | 0.635551 | 1.2:+71041391 | None:intergenic |
| CATTAAAATCACAGATGCAG+GGG | 0.637602 | 1.2:+71041052 | None:intergenic |
| TTGTTCAAGAGGAGGTACAA+AGG | 0.639298 | 1.2:-71040489 | MS.gene60705:CDS |
| TTTCGATCACCATTGCCCGT+GGG | 0.644584 | 1.2:-71041344 | MS.gene60705:CDS |
| GATCATCTTCAACCTTAGGA+CGG | 0.645908 | 1.2:+71040410 | None:intergenic |
| GTACCTTATAAGCACAAACC+AGG | 0.647591 | 1.2:-71040976 | MS.gene60705:intron |
| ATTCAGAATAGAGGGAGCAA+CGG | 0.656219 | 1.2:-71040322 | MS.gene60705:CDS |
| ATAATGATATTGGGACGGTG+TGG | 0.667624 | 1.2:-71041091 | MS.gene60705:CDS |
| GTGATCCGGGTATCATTCCG+AGG | 0.670539 | 1.2:-71041567 | MS.gene60705:CDS |
| GGATAATAATGATATTGGGA+CGG | 0.677213 | 1.2:-71041096 | MS.gene60705:CDS |
| CGGGAAATGACTGTAGTCAG+CGG | 0.680419 | 1.2:+71040466 | None:intergenic |
| GAATATTGAGCAACTCGACG+AGG | 0.690893 | 1.2:-71040347 | MS.gene60705:CDS |
| CTGACTACAGTCATTTCCCG+GGG | 0.712910 | 1.2:-71040463 | MS.gene60705:CDS |
| CAACGACAGAGTGATAAGCA+GGG | 0.714900 | 1.2:+71042198 | None:intergenic |
| ATGGAGCAATGCGAGCAACG+AGG | 0.766529 | 1.2:+71041388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTGTATCTCATTTAT+TGG | - | chr1.2:71043006-71043025 | MS.gene60705:intron | 15.0% |
| !! | CTGAAAAATATATAAAGAAA+AGG | + | chr1.2:71041493-71041512 | None:intergenic | 15.0% |
| !! | TTGATATTGATACTATATAT+AGG | - | chr1.2:71041376-71041395 | MS.gene60705:CDS | 15.0% |
| !! | TTGTGAGTAAAATATTAAAT+TGG | - | chr1.2:71041141-71041160 | MS.gene60705:CDS | 15.0% |
| !! | TTTATTGTATCTCATTTATT+GGG | - | chr1.2:71043007-71043026 | MS.gene60705:intron | 15.0% |
| !!! | CTTTTGTTCTAATTTTTTTT+GGG | - | chr1.2:71042691-71042710 | MS.gene60705:intron | 15.0% |
| !!! | TATTTCTAATTAATACACTT+TGG | + | chr1.2:71043103-71043122 | None:intergenic | 15.0% |
| !!! | TCAGTATATTTGTTATTATT+GGG | - | chr1.2:71040639-71040658 | MS.gene60705:intron | 15.0% |
| !!! | TCTTTATATATTTTTCAGAT+TGG | - | chr1.2:71041495-71041514 | MS.gene60705:CDS | 15.0% |
| !! | AACAAAATAGTACAGTTAAT+AGG | + | chr1.2:71043209-71043228 | None:intergenic | 20.0% |
| !! | ACTTATTTAAATTGAGACTA+TGG | + | chr1.2:71041950-71041969 | None:intergenic | 20.0% |
| !! | AGTTTATATTTAGTTAGTGT+TGG | + | chr1.2:71041114-71041133 | None:intergenic | 20.0% |
| !! | ATTAAATTGGTTGGATTAAA+TGG | - | chr1.2:71041154-71041173 | MS.gene60705:CDS | 20.0% |
| !! | ATTTAGTTAATCATATGTGT+CGG | + | chr1.2:71042081-71042100 | None:intergenic | 20.0% |
| !! | CAATAATAACAAATATACTG+AGG | + | chr1.2:71040640-71040659 | None:intergenic | 20.0% |
| !! | GACCTAAAAATATATACTAT+GGG | + | chr1.2:71042306-71042325 | None:intergenic | 20.0% |
| !! | GAGTAAAATATTAAATTGGT+TGG | - | chr1.2:71041145-71041164 | MS.gene60705:CDS | 20.0% |
| !! | GTTTATATTTAGTTAGTGTT+GGG | + | chr1.2:71041113-71041132 | None:intergenic | 20.0% |
| !! | TAAAAATAGAAGAAAGAATG+AGG | + | chr1.2:71040195-71040214 | None:intergenic | 20.0% |
| !! | TAGTAAAATCAAACAGTATT+AGG | + | chr1.2:71042191-71042210 | None:intergenic | 20.0% |
| !! | TCTTCTTTGAATTATTAGTT+AGG | - | chr1.2:71040355-71040374 | MS.gene60705:CDS | 20.0% |
| !! | TTATTGTATCTCATTTATTG+GGG | - | chr1.2:71043008-71043027 | MS.gene60705:intron | 20.0% |
| !! | TTTATATTTAGTTAGTGTTG+GGG | + | chr1.2:71041112-71041131 | None:intergenic | 20.0% |
| !!! | AGGTTGTTTAAATAATTTTC+TGG | - | chr1.2:71043361-71043380 | MS.gene60705:intron | 20.0% |
| !!! | ATACTGTTTGATTTTACTAA+AGG | - | chr1.2:71042192-71042211 | MS.gene60705:CDS | 20.0% |
| !!! | ATCCCATAGTATATATTTTT+AGG | - | chr1.2:71042301-71042320 | MS.gene60705:intron | 20.0% |
| !!! | CAGTATATTTGTTATTATTG+GGG | - | chr1.2:71040640-71040659 | MS.gene60705:intron | 20.0% |
| !!! | CTCAGTATATTTGTTATTAT+TGG | - | chr1.2:71040638-71040657 | MS.gene60705:intron | 20.0% |
| !!! | GCTTTTGTTCTAATTTTTTT+TGG | - | chr1.2:71042690-71042709 | MS.gene60705:intron | 20.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | - | chr1.2:71042105-71042124 | MS.gene60705:CDS | 20.0% |
| !!! | TGATGGATAATAATGATATT+GGG | - | chr1.2:71042821-71042840 | MS.gene60705:intron | 20.0% |
| !!! | TGTGTTTTTTTGTTTGTTTT+GGG | - | chr1.2:71040416-71040435 | MS.gene60705:CDS | 20.0% |
| !!! | TTGTGTTTTTTTGTTTGTTT+TGG | - | chr1.2:71040415-71040434 | MS.gene60705:CDS | 20.0% |
| !!! | TTTTAGCTCATTTTTCATTT+GGG | - | chr1.2:71040210-71040229 | MS.gene60705:CDS | 20.0% |
| !!! | TTTTTAGCTCATTTTTCATT+TGG | - | chr1.2:71040209-71040228 | MS.gene60705:CDS | 20.0% |
| ! | AAACAAACATGAAGAAGTAA+CGG | + | chr1.2:71042741-71042760 | None:intergenic | 25.0% |
| ! | AATACACAAAAGATGATAAC+TGG | + | chr1.2:71041758-71041777 | None:intergenic | 25.0% |
| ! | ATCCATTTATTTCCATTGTT+GGG | - | chr1.2:71041904-71041923 | MS.gene60705:intron | 25.0% |
| ! | ATCTGATGACAAAATTGAAT+CGG | + | chr1.2:71043648-71043667 | None:intergenic | 25.0% |
| ! | CTGAATGATGAAAATATTCA+TGG | + | chr1.2:71043263-71043282 | None:intergenic | 25.0% |
| ! | GGACCTAAAAATATATACTA+TGG | + | chr1.2:71042307-71042326 | None:intergenic | 25.0% |
| ! | GTTGTATGTTGAGTATTATT+GGG | - | chr1.2:71040383-71040402 | MS.gene60705:CDS | 25.0% |
| ! | TATAGATCGTTACAAAAGAT+TGG | + | chr1.2:71042270-71042289 | None:intergenic | 25.0% |
| ! | TATCCATTTATTTCCATTGT+TGG | - | chr1.2:71041903-71041922 | MS.gene60705:intron | 25.0% |
| ! | TCTACAATTGTATAATCAGT+GGG | - | chr1.2:71040442-71040461 | MS.gene60705:CDS | 25.0% |
| ! | TGTTGTATGTTGAGTATTAT+TGG | - | chr1.2:71040382-71040401 | MS.gene60705:CDS | 25.0% |
| ! | TTCTACAATTGTATAATCAG+TGG | - | chr1.2:71040441-71040460 | MS.gene60705:CDS | 25.0% |
| ! | TTGTTCAAAAAAGACAGTAT+AGG | + | chr1.2:71041531-71041550 | None:intergenic | 25.0% |
| ! | TTTGTACTATTAATGCATCA+GGG | - | chr1.2:71041467-71041486 | MS.gene60705:CDS | 25.0% |
| !! | ACATAATGCCTTAATGTTTT+GGG | - | chr1.2:71041005-71041024 | MS.gene60705:CDS | 25.0% |
| !! | ACATTAAGGCATTATGTATA+TGG | + | chr1.2:71041002-71041021 | None:intergenic | 25.0% |
| !! | CAATTTCTCTTTTACATTTC+TGG | - | chr1.2:71042973-71042992 | MS.gene60705:intron | 25.0% |
| !! | CAATTTTCCATTTGTATCTT+TGG | - | chr1.2:71040696-71040715 | MS.gene60705:intron | 25.0% |
| !! | CTGATGGATAATAATGATAT+TGG | - | chr1.2:71042820-71042839 | MS.gene60705:intron | 25.0% |
| !! | CTTTTGCAGAAATTCATATT+GGG | - | chr1.2:71041668-71041687 | MS.gene60705:intron | 25.0% |
| !! | GCATTTTCTTCATATTATTC+AGG | - | chr1.2:71041800-71041819 | MS.gene60705:intron | 25.0% |
| !! | TACATAATGCCTTAATGTTT+TGG | - | chr1.2:71041004-71041023 | MS.gene60705:CDS | 25.0% |
| !! | TAGAAGTATATGCATAAACA+TGG | - | chr1.2:71041344-71041363 | MS.gene60705:CDS | 25.0% |
| !! | TCAGAAGTCATTATTTCTTT+GGG | + | chr1.2:71041250-71041269 | None:intergenic | 25.0% |
| !! | TCTTTTGCAGAAATTCATAT+TGG | - | chr1.2:71041667-71041686 | MS.gene60705:intron | 25.0% |
| !! | TGTTTGTTGATTATTGAAGA+AGG | - | chr1.2:71040800-71040819 | MS.gene60705:intron | 25.0% |
| !! | TTCAGAAGTCATTATTTCTT+TGG | + | chr1.2:71041251-71041270 | None:intergenic | 25.0% |
| !!! | AACTGTACTATTTTGTTATG+TGG | - | chr1.2:71043212-71043231 | MS.gene60705:intron | 25.0% |
| !!! | TAGTATATATTTTTAGGTCC+TGG | - | chr1.2:71042307-71042326 | MS.gene60705:intron | 25.0% |
| !!! | TGTTTGATTTTACTAAAGGA+AGG | - | chr1.2:71042196-71042215 | MS.gene60705:CDS | 25.0% |
| AAAAAGACAGTATAGGAGAT+TGG | + | chr1.2:71041524-71041543 | None:intergenic | 30.0% | |
| AACATTTAACAGAACTTACG+TGG | + | chr1.2:71041862-71041881 | None:intergenic | 30.0% | |
| AATATTTCACCTTTACAGGA+AGG | + | chr1.2:71042487-71042506 | None:intergenic | 30.0% | |
| AATCCAGACTCAAACATATT+TGG | - | chr1.2:71040497-71040516 | MS.gene60705:CDS | 30.0% | |
| ACAAAAGAAGTAATGGTCAA+TGG | - | chr1.2:71042461-71042480 | MS.gene60705:intron | 30.0% | |
| ACCAAAAAAATTGTGAGTGT+TGG | - | chr1.2:71040575-71040594 | MS.gene60705:CDS | 30.0% | |
| ATGTGGAAATTAATACGCAA+AGG | - | chr1.2:71043229-71043248 | MS.gene60705:intron | 30.0% | |
| CAAACATCCAAAGATACAAA+TGG | + | chr1.2:71040706-71040725 | None:intergenic | 30.0% | |
| CCAAAAAAATTGTGAGTGTT+GGG | - | chr1.2:71040576-71040595 | MS.gene60705:CDS | 30.0% | |
| GGATAATAATGATATTGGGA+CGG | - | chr1.2:71042825-71042844 | MS.gene60705:intron | 30.0% | |
| GTTGAAGATGATCTAGATAT+CGG | - | chr1.2:71043521-71043540 | MS.gene60705:intron | 30.0% | |
| GTTTGTACTATTAATGCATC+AGG | - | chr1.2:71041466-71041485 | MS.gene60705:CDS | 30.0% | |
| TCACAATATTTCACCTTTAC+AGG | + | chr1.2:71042491-71042510 | None:intergenic | 30.0% | |
| TCAGATATGATTACAATCAC+TGG | - | chr1.2:71040752-71040771 | MS.gene60705:intron | 30.0% | |
| TCTGATGACAAAATTGAATC+GGG | + | chr1.2:71043647-71043666 | None:intergenic | 30.0% | |
| TGAAAGATATAGTGCATGAT+AGG | - | chr1.2:71041274-71041293 | MS.gene60705:intron | 30.0% | |
| TGAATTTCTGCAAAAGATTC+AGG | + | chr1.2:71041664-71041683 | None:intergenic | 30.0% | |
| ! | AACATTGAAAGCATAACTGA+AGG | + | chr1.2:71040784-71040803 | None:intergenic | 30.0% |
| ! | CTGTTAATGCTGTAATCTTT+TGG | - | chr1.2:71041560-71041579 | MS.gene60705:CDS | 30.0% |
| ! | CTTCTTCATGTTTGTTTCTT+CGG | - | chr1.2:71042744-71042763 | MS.gene60705:intron | 30.0% |
| ! | TCTTTTGTGTATTTGTAGCA+AGG | - | chr1.2:71041765-71041784 | MS.gene60705:intron | 30.0% |
| !! | AGGATCAATGTTTTTAATCG+AGG | - | chr1.2:71043341-71043360 | MS.gene60705:intron | 30.0% |
| !! | ATTTTACATCAAGGTTCTGA+TGG | - | chr1.2:71042804-71042823 | MS.gene60705:intron | 30.0% |
| !! | TATTTGTTATTATTGGGGAG+AGG | - | chr1.2:71040645-71040664 | MS.gene60705:intron | 30.0% |
| !! | TTGGTTTTCTAGTCAACATT+GGG | - | chr1.2:71041437-71041456 | MS.gene60705:CDS | 30.0% |
| !!! | AGGATATGCTATTTTAGTAG+TGG | - | chr1.2:71041820-71041839 | MS.gene60705:intron | 30.0% |
| !!! | TTTGGTTTTCTAGTCAACAT+TGG | - | chr1.2:71041436-71041455 | MS.gene60705:CDS | 30.0% |
| !!! | TTTTTTTGGTTTTAACCCTC+CGG | + | chr1.2:71040565-71040584 | None:intergenic | 30.0% |
| AAAAGAGAAATTGACTGACC+TGG | + | chr1.2:71042966-71042985 | None:intergenic | 35.0% | |
| ATAACAGGTAAGTAGGAAGA+TGG | + | chr1.2:71042003-71042022 | None:intergenic | 35.0% | |
| ATTATGAATGAGAGCAGTGT+TGG | - | chr1.2:71040959-71040978 | MS.gene60705:intron | 35.0% | |
| ATTGGTTGGATTAAATGGTC+TGG | - | chr1.2:71041159-71041178 | MS.gene60705:CDS | 35.0% | |
| CAAACCAAGGAAATCTGAAA+GGG | - | chr1.2:71043057-71043076 | MS.gene60705:intron | 35.0% | |
| CAGGAGATAATTACGAGATA+TGG | + | chr1.2:71041645-71041664 | None:intergenic | 35.0% | |
| CATTAAAATCACAGATGCAG+GGG | + | chr1.2:71042872-71042891 | None:intergenic | 35.0% | |
| CATTACTTCCTTTCCAAACT+TGG | + | chr1.2:71040155-71040174 | None:intergenic | 35.0% | |
| CCATTAAAATCACAGATGCA+GGG | + | chr1.2:71042873-71042892 | None:intergenic | 35.0% | |
| CTCTCATTCATAATCGATGT+GGG | + | chr1.2:71040953-71040972 | None:intergenic | 35.0% | |
| CTTACCTGTTATATGAAGCA+CGG | - | chr1.2:71042011-71042030 | MS.gene60705:intron | 35.0% | |
| CTTATTGTTTCATCTCTCTG+TGG | - | chr1.2:71042893-71042912 | MS.gene60705:intron | 35.0% | |
| CTTGATGTAAAATGCTGAGA+AGG | + | chr1.2:71042797-71042816 | None:intergenic | 35.0% | |
| GAAAACCAAAACACTTCAGT+AGG | + | chr1.2:71041426-71041445 | None:intergenic | 35.0% | |
| GACTTGTACTTATGATTACG+AGG | - | chr1.2:71040523-71040542 | MS.gene60705:CDS | 35.0% | |
| GCTTCATATAACAGGTAAGT+AGG | + | chr1.2:71042010-71042029 | None:intergenic | 35.0% | |
| GTCCCAACAATGGAAATAAA+TGG | + | chr1.2:71041909-71041928 | None:intergenic | 35.0% | |
| GTTTGTAACTATGCAAACCA+AGG | - | chr1.2:71043044-71043063 | MS.gene60705:intron | 35.0% | |
| TACCCCATTGATAAAGTACA+GGG | - | chr1.2:71041218-71041237 | MS.gene60705:intron | 35.0% | |
| TAGCCAAATATGTTTGAGTC+TGG | + | chr1.2:71040503-71040522 | None:intergenic | 35.0% | |
| TATGAATCTTCTACAGTAGC+CGG | - | chr1.2:71042407-71042426 | MS.gene60705:intron | 35.0% | |
| TATTGAAGATATCACAGCGT+AGG | - | chr1.2:71043552-71043571 | MS.gene60705:intron | 35.0% | |
| TCACCCTGTACTTTATCAAT+GGG | + | chr1.2:71041224-71041243 | None:intergenic | 35.0% | |
| TCATAACGAAACTCTTCTTC+TGG | + | chr1.2:71042392-71042411 | None:intergenic | 35.0% | |
| TCTAGATCATCTTCAACCTT+AGG | + | chr1.2:71043518-71043537 | None:intergenic | 35.0% | |
| TCTCAAATTATTACCGGTGT+CGG | - | chr1.2:71042111-71042130 | MS.gene60705:CDS | 35.0% | |
| TCTTCTTCATTGATGTGCTT+GGG | - | chr1.2:71042654-71042673 | MS.gene60705:intron | 35.0% | |
| TGCAGAAATTCATATTGGGA+GGG | - | chr1.2:71041672-71041691 | MS.gene60705:intron | 35.0% | |
| TTACCCCATTGATAAAGTAC+AGG | - | chr1.2:71041217-71041236 | MS.gene60705:intron | 35.0% | |
| TTATTTCCATTGTTGGGACT+TGG | - | chr1.2:71041910-71041929 | MS.gene60705:intron | 35.0% | |
| TTCAACACAGTTGTTGCATA+TGG | + | chr1.2:71042555-71042574 | None:intergenic | 35.0% | |
| TTCTTCTTCATTGATGTGCT+TGG | - | chr1.2:71042653-71042672 | MS.gene60705:intron | 35.0% | |
| TTGCAGAAATTCATATTGGG+AGG | - | chr1.2:71041671-71041690 | MS.gene60705:intron | 35.0% | |
| ! | ACCATTACTTCTTTTGTTCG+TGG | + | chr1.2:71042458-71042477 | None:intergenic | 35.0% |
| ! | CAGTGTTGGATATATAAGAG+AGG | - | chr1.2:71040973-71040992 | MS.gene60705:intron | 35.0% |
| ! | CCATTACTTCTTTTGTTCGT+GGG | + | chr1.2:71042457-71042476 | None:intergenic | 35.0% |
| ! | CTTCTCAGCATTTTACATCA+AGG | - | chr1.2:71042795-71042814 | MS.gene60705:intron | 35.0% |
| ! | TATTTGTAGCAAGGCATCTT+CGG | - | chr1.2:71041774-71041793 | MS.gene60705:intron | 35.0% |
| ! | TCTGTATCGGAAGTTTTCAT+AGG | + | chr1.2:71043312-71043331 | None:intergenic | 35.0% |
| ! | TGGGTATGTTCTAGATTTCT+GGG | - | chr1.2:71040229-71040248 | MS.gene60705:CDS | 35.0% |
| ! | TTGGGTATGTTCTAGATTTC+TGG | - | chr1.2:71040228-71040247 | MS.gene60705:CDS | 35.0% |
| !! | TAATGCCTTAATGTTTTGGG+TGG | - | chr1.2:71041008-71041027 | MS.gene60705:CDS | 35.0% |
| !! | TTGTACCTACTGAAGTGTTT+TGG | - | chr1.2:71041418-71041437 | MS.gene60705:CDS | 35.0% |
| !!! | CCCAACACTCACAATTTTTT+TGG | + | chr1.2:71040579-71040598 | None:intergenic | 35.0% |
| ACAGTCAGAAGTCATTTCAC+AGG | + | chr1.2:71040905-71040924 | None:intergenic | 40.0% | |
| ACGAGGACATTCAGAATAGA+GGG | - | chr1.2:71043591-71043610 | MS.gene60705:intron | 40.0% | |
| AGAAATTCATATTGGGAGGG+AGG | - | chr1.2:71041675-71041694 | MS.gene60705:intron | 40.0% | |
| AGAAGGATGACATTCATGTC+AGG | - | chr1.2:71040817-71040836 | MS.gene60705:intron | 40.0% | |
| ATAATGATATTGGGACGGTG+TGG | - | chr1.2:71042830-71042849 | MS.gene60705:intron | 40.0% | |
| ATCGGGTTCAGCTGTATTAT+CGG | + | chr1.2:71043630-71043649 | None:intergenic | 40.0% | |
| ATTCAGAATAGAGGGAGCAA+CGG | - | chr1.2:71043599-71043618 | MS.gene60705:intron | 40.0% | |
| CACCCTGTACTTTATCAATG+GGG | + | chr1.2:71041223-71041242 | None:intergenic | 40.0% | |
| CAGAAACTATGTCTCGTCAA+AGG | - | chr1.2:71043775-71043794 | MS.gene60705:CDS | 40.0% | |
| CAGTCAGAAGTCATTTCACA+GGG | + | chr1.2:71040904-71040923 | None:intergenic | 40.0% | |
| CATCTCCACCCAAAACATTA+AGG | + | chr1.2:71041016-71041035 | None:intergenic | 40.0% | |
| CCCACGAACAAAAGAAGTAA+TGG | - | chr1.2:71042454-71042473 | MS.gene60705:intron | 40.0% | |
| CGAGACATAGTTTCTGCTTT+CGG | + | chr1.2:71043771-71043790 | None:intergenic | 40.0% | |
| CTCACCCTGTACTTTATCAA+TGG | + | chr1.2:71041225-71041244 | None:intergenic | 40.0% | |
| GAATGCACAAAGCATGCTAT+GGG | - | chr1.2:71043151-71043170 | MS.gene60705:intron | 40.0% | |
| GATCATCTTCAACCTTAGGA+CGG | + | chr1.2:71043514-71043533 | None:intergenic | 40.0% | |
| GCAAACCAAGGAAATCTGAA+AGG | - | chr1.2:71043056-71043075 | MS.gene60705:intron | 40.0% | |
| GCCATTAAAATCACAGATGC+AGG | + | chr1.2:71042874-71042893 | None:intergenic | 40.0% | |
| GCTCTCATTCATAATCGATG+TGG | + | chr1.2:71040954-71040973 | None:intergenic | 40.0% | |
| GCTTTCGGTGACATTTGAAT+TGG | + | chr1.2:71043756-71043775 | None:intergenic | 40.0% | |
| GGGTCTGTGATTTCTTTAGT+AGG | - | chr1.2:71040249-71040268 | MS.gene60705:CDS | 40.0% | |
| GTACCTTATAAGCACAAACC+AGG | - | chr1.2:71042945-71042964 | MS.gene60705:intron | 40.0% | |
| GTGAAATGACTTCTGACTGT+TGG | - | chr1.2:71040905-71040924 | MS.gene60705:intron | 40.0% | |
| TAACGAAACTCTTCTTCTGG+TGG | + | chr1.2:71042389-71042408 | None:intergenic | 40.0% | |
| TGAATGCACAAAGCATGCTA+TGG | - | chr1.2:71043150-71043169 | MS.gene60705:intron | 40.0% | |
| TTGGGAAAGAAGTGGAAACT+GGG | - | chr1.2:71043709-71043728 | MS.gene60705:intron | 40.0% | |
| TTTGAGTAGAGCTATCATGG+AGG | - | chr1.2:71040865-71040884 | MS.gene60705:intron | 40.0% | |
| TTTGAGTCTGGATTCGAACT+CGG | + | chr1.2:71040491-71040510 | None:intergenic | 40.0% | |
| ! | CCCTGCATCTGTGATTTTAA+TGG | - | chr1.2:71042870-71042889 | MS.gene60705:intron | 40.0% |
| ! | TGACCTGGTTTGTGCTTATA+AGG | + | chr1.2:71042951-71042970 | None:intergenic | 40.0% |
| ! | TGCTTTGAGTAGAGCTATCA+TGG | - | chr1.2:71040862-71040881 | MS.gene60705:intron | 40.0% |
| ! | TTCATCTCTCTGTGGTTTGT+TGG | - | chr1.2:71042901-71042920 | MS.gene60705:intron | 40.0% |
| ! | TTGTTCAAGAGGAGGTACAA+AGG | - | chr1.2:71043432-71043451 | MS.gene60705:intron | 40.0% |
| ! | TTTCAGGGCTTTTGTTCAAG+AGG | - | chr1.2:71043421-71043440 | MS.gene60705:intron | 40.0% |
| ! | TTTTACTTCTGCACGTGATC+CGG | - | chr1.2:71042340-71042359 | MS.gene60705:intron | 40.0% |
| !! | AAGTAAAACAGAGAAGCACC+AGG | + | chr1.2:71042328-71042347 | None:intergenic | 40.0% |
| !! | TGGGACTTGGTTTGTGTTTA+AGG | - | chr1.2:71041923-71041942 | MS.gene60705:intron | 40.0% |
| !!! | CATGTCAGGTGGTTTTTTGT+TGG | - | chr1.2:71040831-71040850 | MS.gene60705:intron | 40.0% |
| !!! | TCTGAGCTAGTTTTTGTTGC+TGG | - | chr1.2:71040281-71040300 | MS.gene60705:CDS | 40.0% |
| AACTTCCGATACAGAGCTGA+TGG | - | chr1.2:71043317-71043336 | MS.gene60705:intron | 45.0% | |
| ACAAGTGTGCAAGAGAGAAG+TGG | + | chr1.2:71041402-71041421 | None:intergenic | 45.0% | |
| AGCCCTCAAGGAACAATTTC+AGG | - | chr1.2:71043405-71043424 | MS.gene60705:intron | 45.0% | |
| AGCCCTGAAATTGTTCCTTG+AGG | + | chr1.2:71043411-71043430 | None:intergenic | 45.0% | |
| AGGATGACATTCATGTCAGG+TGG | - | chr1.2:71040820-71040839 | MS.gene60705:intron | 45.0% | |
| AGTGGGTCAACCAAGTGATT+CGG | - | chr1.2:71040459-71040478 | MS.gene60705:CDS | 45.0% | |
| ATCGCCCTTTCAGATTTCCT+TGG | + | chr1.2:71043064-71043083 | None:intergenic | 45.0% | |
| ATGCAGTGTCAAGGTCTCTT+AGG | - | chr1.2:71041033-71041052 | MS.gene60705:CDS | 45.0% | |
| ATTACGAGGCCTCATTTCCT+AGG | - | chr1.2:71040537-71040556 | MS.gene60705:CDS | 45.0% | |
| ATTCATATTGGGAGGGAGGT+TGG | - | chr1.2:71041679-71041698 | MS.gene60705:intron | 45.0% | |
| CAACGACAGAGTGATAAGCA+GGG | + | chr1.2:71041726-71041745 | None:intergenic | 45.0% | |
| CACAAACCAAGTCCCAACAA+TGG | + | chr1.2:71041919-71041938 | None:intergenic | 45.0% | |
| CACGATACAAAAACCGACAC+CGG | + | chr1.2:71042127-71042146 | None:intergenic | 45.0% | |
| CCACAATACGATCTGATGCT+AGG | - | chr1.2:71043678-71043697 | MS.gene60705:intron | 45.0% | |
| CCTAGCATCAGATCGTATTG+TGG | + | chr1.2:71043681-71043700 | None:intergenic | 45.0% | |
| CGATCTCCACCTAAATCATC+TGG | + | chr1.2:71043491-71043510 | None:intergenic | 45.0% | |
| CGTGAACCAGATGATTTAGG+TGG | - | chr1.2:71043482-71043501 | MS.gene60705:intron | 45.0% | |
| GAATATTGAGCAACTCGACG+AGG | - | chr1.2:71043574-71043593 | MS.gene60705:intron | 45.0% | |
| GACGAGGACATTCAGAATAG+AGG | - | chr1.2:71043590-71043609 | MS.gene60705:intron | 45.0% | |
| GCACAGAAATAAAGCCCTCA+AGG | - | chr1.2:71043393-71043412 | MS.gene60705:intron | 45.0% | |
| GCCCTCAAGGAACAATTTCA+GGG | - | chr1.2:71043406-71043425 | MS.gene60705:intron | 45.0% | |
| GCCCTGAAATTGTTCCTTGA+GGG | + | chr1.2:71043410-71043429 | None:intergenic | 45.0% | |
| GGACGTGAACCAGATGATTT+AGG | - | chr1.2:71043479-71043498 | MS.gene60705:intron | 45.0% | |
| GGTTGGATTAAATGGTCTGG+AGG | - | chr1.2:71041162-71041181 | MS.gene60705:CDS | 45.0% | |
| GTGTCCGTGCTTCATATAAC+AGG | + | chr1.2:71042018-71042037 | None:intergenic | 45.0% | |
| GTTGGGAAAGAAGTGGAAAC+TGG | - | chr1.2:71043708-71043727 | MS.gene60705:intron | 45.0% | |
| TCAACGACAGAGTGATAAGC+AGG | + | chr1.2:71041727-71041746 | None:intergenic | 45.0% | |
| TCGGGTTCAGCTGTATTATC+GGG | + | chr1.2:71043629-71043648 | None:intergenic | 45.0% | |
| TGCAGTGTCAAGGTCTCTTA+GGG | - | chr1.2:71041034-71041053 | MS.gene60705:CDS | 45.0% | |
| TGCATCGTGAGACACAAACA+CGG | + | chr1.2:71042151-71042170 | None:intergenic | 45.0% | |
| TTTACTTCTGCACGTGATCC+GGG | - | chr1.2:71042341-71042360 | MS.gene60705:intron | 45.0% | |
| ! | CTTTTGTTCGTGGGAACTGA+AGG | + | chr1.2:71042448-71042467 | None:intergenic | 45.0% |
| ! | TGGGTTTTTCCAATGTGCAG+AGG | - | chr1.2:71042710-71042729 | MS.gene60705:intron | 45.0% |
| !! | AAGGCTTGGTGTTTGTTGTC+CGG | + | chr1.2:71042429-71042448 | None:intergenic | 45.0% |
| !! | ATCTCTCTGTGGTTTGTTGG+TGG | - | chr1.2:71042904-71042923 | MS.gene60705:intron | 45.0% |
| !! | TGGTTTGTTGGTGGACTAAC+TGG | - | chr1.2:71042913-71042932 | MS.gene60705:intron | 45.0% |
| !! | GTAAATATATATAATATATT+AGG | + | chr1.2:71041981-71042000 | None:intergenic | 5.0% |
| ACGGTAGTTCCTCTGCACAT+TGG | + | chr1.2:71042722-71042741 | None:intergenic | 50.0% | |
| AGGCCTCATTTCCTAGGAAC+CGG | - | chr1.2:71040543-71040562 | MS.gene60705:CDS | 50.0% | |
| ATCGTACCAGACCGATGCAT+TGG | + | chr1.2:71042607-71042626 | None:intergenic | 50.0% | |
| CAAAGCGCGTGTACCAAGTT+TGG | - | chr1.2:71040139-71040158 | MS.gene60705:CDS | 50.0% | |
| CGCGTGTACCAAGTTTGGAA+AGG | - | chr1.2:71040144-71040163 | MS.gene60705:CDS | 50.0% | |
| CGGGAAATGACTGTAGTCAG+CGG | + | chr1.2:71043458-71043477 | None:intergenic | 50.0% | |
| CGTCGAACACACCTAATTCG+AGG | + | chr1.2:71042042-71042061 | None:intergenic | 50.0% | |
| CTCATTTCCTAGGAACCGGA+GGG | - | chr1.2:71040547-71040566 | MS.gene60705:CDS | 50.0% | |
| CTGACTACAGTCATTTCCCG+GGG | - | chr1.2:71043458-71043477 | MS.gene60705:intron | 50.0% | |
| GAACTCCTCGGAATGATACC+CGG | + | chr1.2:71042362-71042381 | None:intergenic | 50.0% | |
| GCTGACTACAGTCATTTCCC+GGG | - | chr1.2:71043457-71043476 | MS.gene60705:intron | 50.0% | |
| GGTCAATGGCCTTCCTGTAA+AGG | - | chr1.2:71042475-71042494 | MS.gene60705:intron | 50.0% | |
| GTGGGTCAACCAAGTGATTC+GGG | - | chr1.2:71040460-71040479 | MS.gene60705:CDS | 50.0% | |
| TCCTGCCATCAGCTCTGTAT+CGG | + | chr1.2:71043325-71043344 | None:intergenic | 50.0% | |
| TCGGATTCTCCCGAATCACT+TGG | + | chr1.2:71040472-71040491 | None:intergenic | 50.0% | |
| TGATATTGGGACGGTGTGGA+AGG | - | chr1.2:71042834-71042853 | MS.gene60705:intron | 50.0% | |
| TGATGCTAGGCACTCGAGTT+GGG | - | chr1.2:71043691-71043710 | MS.gene60705:intron | 50.0% | |
| TGGTATTTGGACCTGATGCC+AGG | - | chr1.2:71041699-71041718 | MS.gene60705:intron | 50.0% | |
| TTTCGATCACCATTGCCCGT+GGG | - | chr1.2:71042577-71042596 | MS.gene60705:intron | 50.0% | |
| ! | AATCATCTGGTTCACGTCCC+CGG | + | chr1.2:71043478-71043497 | None:intergenic | 50.0% |
| ! | CAGGGCTTTTGTTCAAGAGG+AGG | - | chr1.2:71043424-71043443 | MS.gene60705:intron | 50.0% |
| ! | CGCTGACTACAGTCATTTCC+CGG | - | chr1.2:71043456-71043475 | MS.gene60705:intron | 50.0% |
| ! | TCTGGTGGATGTGAACTCCT+CGG | + | chr1.2:71042374-71042393 | None:intergenic | 50.0% |
| !! | CACTCGAGTTGGGAAAGAAG+TGG | - | chr1.2:71043701-71043720 | MS.gene60705:intron | 50.0% |
| !! | CATATGTGTCGGTGTCGTGT+CGG | + | chr1.2:71042070-71042089 | None:intergenic | 50.0% |
| !! | GTTTTAACCCTCCGGTTCCT+AGG | + | chr1.2:71040557-71040576 | None:intergenic | 50.0% |
| !! | TTGGGAGGGAGGTTGGTATT+TGG | - | chr1.2:71041686-71041705 | MS.gene60705:intron | 50.0% |
| AGCAATGCGAGCAACGAGGA+GGG | + | chr1.2:71042532-71042551 | None:intergenic | 55.0% | |
| AGCCAGCTGTAATCAGGCAC+AGG | + | chr1.2:71040613-71040632 | None:intergenic | 55.0% | |
| ATAAGCAGGGACCTGGCATC+AGG | + | chr1.2:71041713-71041732 | None:intergenic | 55.0% | |
| ATGGAGCAATGCGAGCAACG+AGG | + | chr1.2:71042536-71042555 | None:intergenic | 55.0% | |
| CAGAGTGATAAGCAGGGACC+TGG | + | chr1.2:71041720-71041739 | None:intergenic | 55.0% | |
| CCTCATTTCCTAGGAACCGG+AGG | - | chr1.2:71040546-71040565 | MS.gene60705:CDS | 55.0% | |
| CCTCCGGTTCCTAGGAAATG+AGG | + | chr1.2:71040549-71040568 | None:intergenic | 55.0% | |
| CTGATGCTAGGCACTCGAGT+TGG | - | chr1.2:71043690-71043709 | MS.gene60705:intron | 55.0% | |
| GCACGGACACTCCTCGAATT+AGG | - | chr1.2:71042028-71042047 | MS.gene60705:intron | 55.0% | |
| GGAGCAAGCCAGCTGTAATC+AGG | + | chr1.2:71040619-71040638 | None:intergenic | 55.0% | |
| GTCAAGGTCTCTTAGGGTCC+TGG | - | chr1.2:71041040-71041059 | MS.gene60705:CDS | 55.0% | |
| GTGATCCGGGTATCATTCCG+AGG | - | chr1.2:71042354-71042373 | MS.gene60705:intron | 55.0% | |
| GTTCGTGGGAACTGAAGGCT+TGG | + | chr1.2:71042443-71042462 | None:intergenic | 55.0% | |
| GTTTCGATCACCATTGCCCG+TGG | - | chr1.2:71042576-71042595 | MS.gene60705:intron | 55.0% | |
| TCCGATACAGAGCTGATGGC+AGG | - | chr1.2:71043321-71043340 | MS.gene60705:intron | 55.0% | |
| TGCCTGTGCCTGATTACAGC+TGG | - | chr1.2:71040608-71040627 | MS.gene60705:CDS | 55.0% | |
| TGGGTGGAGATGCAGTGTCA+AGG | - | chr1.2:71041024-71041043 | MS.gene60705:CDS | 55.0% | |
| ! | ATCATCTGGTTCACGTCCCC+GGG | + | chr1.2:71043477-71043496 | None:intergenic | 55.0% |
| ! | GTTGGGGTGTCCAGAGTCTA+GGG | + | chr1.2:71041096-71041115 | None:intergenic | 55.0% |
| ! | TGTTGGGGTGTCCAGAGTCT+AGG | + | chr1.2:71041097-71041116 | None:intergenic | 55.0% |
| ! | TTGGGGTGTCCAGAGTCTAG+GGG | + | chr1.2:71041095-71041114 | None:intergenic | 55.0% |
| AGGTGGAGATCGCCGTCCTA+AGG | - | chr1.2:71043499-71043518 | MS.gene60705:intron | 60.0% | |
| CGGGAAGGGGCTCAAATTCC+AGG | + | chr1.2:71041061-71041080 | None:intergenic | 60.0% | |
| GAGCAATGCGAGCAACGAGG+AGG | + | chr1.2:71042533-71042552 | None:intergenic | 60.0% | |
| GATCACCATTGCCCGTGGGT+GGG | - | chr1.2:71042581-71042600 | MS.gene60705:intron | 60.0% | |
| ! | TCCAGAGTCTAGGGGAGTGC+CGG | + | chr1.2:71041087-71041106 | None:intergenic | 60.0% |
| ATTGGCCCACCCACGGGCAA+TGG | + | chr1.2:71042589-71042608 | None:intergenic | 65.0% | |
| CCGTGGGTGGGCCAATGCAT+CGG | - | chr1.2:71042593-71042612 | MS.gene60705:intron | 65.0% | |
| CGATCACCATTGCCCGTGGG+TGG | - | chr1.2:71042580-71042599 | MS.gene60705:intron | 65.0% | |
| TTTGAGCCCCTTCCCGCTCC+CGG | - | chr1.2:71041065-71041084 | MS.gene60705:CDS | 65.0% | |
| ! | CCGATGCATTGGCCCACCCA+CGG | + | chr1.2:71042596-71042615 | None:intergenic | 65.0% |
| ! | CGATGCATTGGCCCACCCAC+GGG | + | chr1.2:71042595-71042614 | None:intergenic | 65.0% |
| ! | GGTGGGCCAATGCATCGGTC+TGG | - | chr1.2:71042598-71042617 | MS.gene60705:intron | 65.0% |
| !! | CCAGAGTCTAGGGGAGTGCC+GGG | + | chr1.2:71041086-71041105 | None:intergenic | 65.0% |
| CCCGGCACTCCCCTAGACTC+TGG | - | chr1.2:71041083-71041102 | MS.gene60705:CDS | 70.0% | |
| !! | GTCTAGGGGAGTGCCGGGAG+CGG | + | chr1.2:71041081-71041100 | None:intergenic | 70.0% |
| !! | TCTAGGGGAGTGCCGGGAGC+GGG | + | chr1.2:71041080-71041099 | None:intergenic | 70.0% |
| !! | GGAGTGCCGGGAGCGGGAAG+GGG | + | chr1.2:71041074-71041093 | None:intergenic | 75.0% |
| !! | GGGAGTGCCGGGAGCGGGAA+GGG | + | chr1.2:71041075-71041094 | None:intergenic | 75.0% |
| !!! | GGGGAGTGCCGGGAGCGGGA+AGG | + | chr1.2:71041076-71041095 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71040132 | 71043811 | 71040132 | ID=MS.gene60705 |
| chr1.2 | mRNA | 71040132 | 71043811 | 71040132 | ID=MS.gene60705.t1;Parent=MS.gene60705 |
| chr1.2 | exon | 71043770 | 71043811 | 71043770 | ID=MS.gene60705.t1.exon1;Parent=MS.gene60705.t1 |
| chr1.2 | CDS | 71043770 | 71043811 | 71043770 | ID=cds.MS.gene60705.t1;Parent=MS.gene60705.t1 |
| chr1.2 | exon | 71042081 | 71042266 | 71042081 | ID=MS.gene60705.t1.exon2;Parent=MS.gene60705.t1 |
| chr1.2 | CDS | 71042081 | 71042266 | 71042081 | ID=cds.MS.gene60705.t1;Parent=MS.gene60705.t1 |
| chr1.2 | exon | 71041324 | 71041620 | 71041324 | ID=MS.gene60705.t1.exon3;Parent=MS.gene60705.t1 |
| chr1.2 | CDS | 71041324 | 71041620 | 71041324 | ID=cds.MS.gene60705.t1;Parent=MS.gene60705.t1 |
| chr1.2 | exon | 71040977 | 71041213 | 71040977 | ID=MS.gene60705.t1.exon4;Parent=MS.gene60705.t1 |
| chr1.2 | CDS | 71040977 | 71041213 | 71040977 | ID=cds.MS.gene60705.t1;Parent=MS.gene60705.t1 |
| chr1.2 | exon | 71040132 | 71040638 | 71040132 | ID=MS.gene60705.t1.exon5;Parent=MS.gene60705.t1 |
| chr1.2 | CDS | 71040132 | 71040638 | 71040132 | ID=cds.MS.gene60705.t1;Parent=MS.gene60705.t1 |
| Gene Sequence |
| Protein sequence |
