AlfalfaGEDB | MS.gene60739

M. sativa cultivar XinJiangDaYe / MS.gene60739

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60739.t1	KEH43634.1	98.7	393	5	0	675	1067	675	1067	4.50E-220	775

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60739.t1	C0LGF5	73.0	404	91	6	675	1065	674	1072	6.0e-165	583.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60739.t1	A0A072VNN3	98.7	393	5	0	675	1067	675	1067	3.2e-220	775.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007797	MS.gene60739	PPI
MS.gene032378	MS.gene60739	PPI
MS.gene053391	MS.gene60739	PPI
MS.gene32299	MS.gene60739	PPI
MS.gene60739	MS.gene063200	PPI
MS.gene60739	MS.gene42087	PPI
MS.gene60739	MS.gene65144	PPI
MS.gene60739	MS.gene91754	PPI
MS.gene60739	MS.gene38944	PPI
MS.gene60739	MS.gene64584	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene60739.t1	MTR_1g097580	98.688	1067	14	0	1	1067	1	1067	2112
MS.gene60739.t1	MTR_7g059285	46.711	1049	511	12	38	1050	43	1079	904
MS.gene60739.t1	MTR_5g045910	47.822	1033	497	11	47	1054	57	1072	888
MS.gene60739.t1	MTR_3g090480	45.522	1083	540	15	4	1060	1	1059	837
MS.gene60739.t1	MTR_4g105370	45.204	1053	543	12	26	1058	26	1064	817
MS.gene60739.t1	MTR_3g060880	44.295	1043	533	14	26	1045	38	1055	763
MS.gene60739.t1	MTR_2g070020	39.174	1090	590	20	10	1045	16	1086	673
MS.gene60739.t1	MTR_1g047670	38.095	1071	595	18	27	1043	32	1088	639
MS.gene60739.t1	MTR_5g014700	38.292	1042	522	19	36	1056	37	978	634
MS.gene60739.t1	MTR_4g097880	38.529	1033	513	18	36	1048	37	967	628

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene60739.t1	AT1G34110	74.837	1073	250	8	7	1065	6	1072	1479
MS.gene60739.t1	AT1G34110	74.764	1058	248	7	7	1050	6	1058	1462
MS.gene60739.t1	AT3G24240	47.121	1042	508	12	47	1063	60	1083	903
MS.gene60739.t1	AT5G48940	45.926	1080	536	12	1	1052	15	1074	886
MS.gene60739.t1	AT5G56040	45.094	1060	526	14	26	1061	27	1054	833
MS.gene60739.t1	AT4G26540	44.340	1060	538	15	26	1061	24	1055	780
MS.gene60739.t1	AT5G56040	46.916	908	446	10	26	924	27	907	744
MS.gene60739.t1	AT1G17230	38.319	1083	608	14	10	1045	7	1076	664
MS.gene60739.t1	AT1G17230	38.319	1083	608	14	10	1045	7	1076	663
MS.gene60739.t1	AT5G63930	38.152	1093	602	18	25	1058	25	1102	645

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Find 218 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATTGAAGAGAAGAG+AGG	0.566797	1.2:-71389787	None:intergenic
AACAAGCAAAGGAGATGAAA+TGG	0.459838	1.2:+71391794	MS.gene60739:CDS
AACAGTTTGAAATTTCAGAA+GGG	0.579937	1.2:-71390276	None:intergenic
AACATGGTGTTGATGTTGAA+GGG	0.623176	1.2:-71389520	None:intergenic
AACTTACTAGTTTGCTTCTT+TGG	0.145016	1.2:+71390230	MS.gene60739:CDS
AAGAATGGAGTTACTGGAAT+AGG	0.349988	1.2:-71391351	None:intergenic
AAGAGCGACGTGTACAGTTA+TGG	0.419445	1.2:+71392525	MS.gene60739:CDS
AAGCTGAAGCATTGTTAAAG+AGG	0.474722	1.2:-71389639	None:intergenic
AAGCTTTGGAAAACAAGCAA+AGG	0.594275	1.2:+71391783	MS.gene60739:CDS
AAGGGAATAGGAACTTAGAC+TGG	0.471707	1.2:+71391961	MS.gene60739:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCTTGATTCCAAATTTG+AGG	+	chr1.2:71392088-71392107	MS.gene60739:CDS	30.0%
ATCAAGTTTCCAAATGAAGA+GGG	-	chr1.2:71390064-71390083	None:intergenic	30.0%
ATGGAACAAAAATTATCCTG+AGG	-	chr1.2:71392401-71392420	None:intergenic	30.0%
ATTGTTAAAGAGGATAGTTG+AGG	-	chr1.2:71389632-71389651	None:intergenic	30.0%
CCATACTCTACATTAAACAA+TGG	-	chr1.2:71392483-71392502	None:intergenic	30.0%
CCATTGTTTAATGTAGAGTA+TGG	+	chr1.2:71392480-71392499	MS.gene60739:intron	30.0%
CTCATAGGTTATTGTTCTAA+CGG	+	chr1.2:71391879-71391898	MS.gene60739:CDS	30.0%
CTTCTTGGAAATTCATTATC+AGG	+	chr1.2:71390679-71390698	MS.gene60739:CDS	30.0%
CTTTCAAGGAATAAGTTAAC+AGG	+	chr1.2:71390607-71390626	MS.gene60739:CDS	30.0%
GACATTGCATGATGATAATT+TGG	-	chr1.2:71392155-71392174	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	71389374	71392887	71389374	ID=MS.gene60739
chr1.2	mRNA	71389374	71392887	71389374	ID=MS.gene60739.t1;Parent=MS.gene60739
chr1.2	exon	71389374	71392185	71389374	ID=MS.gene60739.t1.exon1;Parent=MS.gene60739.t1
chr1.2	CDS	71389374	71392185	71389374	ID=cds.MS.gene60739.t1;Parent=MS.gene60739.t1
chr1.2	exon	71392496	71392887	71392496	ID=MS.gene60739.t1.exon2;Parent=MS.gene60739.t1
chr1.2	CDS	71392496	71392887	71392496	ID=cds.MS.gene60739.t1;Parent=MS.gene60739.t1

Gene Sequence

>MS.gene60739

ATGGAAAATATCAGTGTTACCTCTTTGTTCTTTTGCTTACTCTTTTTTAGCATAACAAAAATACAAGTAATAACTTCTCTTTCACCTGATGGACAAGCACTTCTTTCTCTTGCAACATCATCACCTTCTCTTCTCTCTTCATGGAACCCTTCAACATCAACACCATGTTCATGGAAAGGCATAACTTGTTCACCACAATCTAGAGTAATTTCCCTTTCTATCCCTGATACTTTCCTCAACCTCACTTCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAGCTTCTCAACCTCTCTTCCACAAATCTCTCTGGCTCTATCCCACCTTCTTTTGGTCAACTATCCCATCTTCAACTCCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATTCCTAATGAACTTGGAAGCCTCTCTTCTCTTCAATTCCTTTTCTTAAACTCAAACAGATTAACAGGAACCATTCCACAACAGCTTTCAAATCTCACTTCACTTGAAGTTCTATGTCTTCAAGACAATCTTCTCAATGGCTCAATCCCTTCACAACTAGGCTCTTTGAAATCTCTGCAACAGTTTAGGATAGGTGGTAATCCTTTTCTCACTGGAGAACTCCCTTCACAGTTAGGACTATTAACCAACCTCACCACATTTGGTGCAGCTGCAACTTCACTTTCAGGTTCCATTCCCTCTTCATTTGGAAACTTGATCAATCTACAAACTCTAGCACTTTATGATACAGAAATATCTGGTTCAATACCACCTGAACTTGGTTTGTGTTCTGAGTTGAGGAATCTTTATTTACACATGAACAATCTCACTGGCTCTATTCCTTTTCAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGAAACACATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCATCTAATGATCTCACTGGTGAAATACCTGGTGATTTTGGGAAGCTAGTTGTTCTTGAACAACTTCATTTGTCCGATAATTCCCTCTCTGGTGAGATACCGTGGCAGTTGAGTAACTGCACAAGCCTTGCAACTGTTCAGCTTGACAAGAATCAGTTATCAGGTACAATTCCTTATCAGCTTGGAAAGTTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCGTCCTCTTTTGGAAACTGTTCAGAACTGTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATACCAGATGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAATTCATTATCAGGAAGATTACCAGCAAGTGTTGCAAAATGTAAGTCTTTGGTTAGATTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGACAGTTGCAGAATCTTGTGTTTCTTGATCTGTACATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCAAACATCACGGTTCTTGAGCTATTAGATGCTCATAACAACTACCTCGGCGGAGAAATTCCGTCCCTGATTGGTGAGCTTGAAAATTTGGAGCAGCTTGATCTTAGTAGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTTTGGGAACTTGAGCTATTTGAACAAGCTTATTCTCAACAATAATTTATTAACAGGTTCAATACCAAAATCTGTTAGAAATTTACAGAAGCTAACTCTTTTGGATTTGAGTTATAATAGCTTATCTGGTAGCATACCTCCAGAGATTGGTCATGTTACAAGCCTAACAATCAGTTTGGATTTGAGCTCAAATTCATTCATTGGTGAAATACCTGACTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACATGCTTTTTGGAGGAATTAAGGTTCTTGGTTCTCTTACTAGCCTCACTTCACTCAATATCTCCTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCATTCTTCAAAACTCTAACTTCCAGTTCATATCTTCAGAATCGGAATCTGTGTCAGTCCGTTGACGGTACCACATGCTCTTCAGGTCTGATTCAAAAGAATGGTTTAAAATCTGCGAAAACTATAGCTATGATCACAATTATTCTAGCTTCGGTTACCATAATTGTCATTGCATCGTGGATTCTAGTAACTCGTAGTAATCATCAGTACAATGTTGAAAAGGCTCTGAGGATATCAGGTTCCGCGTCTGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGAAAATATATTGGATTGCTTGAAAGATGAAAATGTGATTGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCGCGGAGAGGTAATAGCAGTAAAGAAGCTTTGGAAAACAAGCAAAGGAGATGAAATGGTCGATTCTTTTGCTGCTGAGATTCAGATTCTTGGCTACATTCGGCATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAACGGGAGTGTTAAGCTTCTTCTCTATAACTTTATCCAAAATGGTAATCTAAGACAACTGTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATCGCTGTTGGTTCGGCTCAAGGTTTAGCTTATCTTCATCATGATTGTGTCCCATCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTCTTGATTCCAAATTTGAGGCATATATTGCAGATTTTGGCCTCGCAAAGCTAATGAATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGCTACATTGCCCCAGGCAAGTGTATTTCACTTTCTTTACATTTTTTCTTAATCTTATGGTTTTAAGCTTGCATATTTTGTAATTGTATTACTACTCGATTCCTCTGCAGCCCTACAACTCGGTCCAATATAAGTTGTTGGATTAATACAACGACTTTGAAAATAATATTTAAAGTAGAAACAATATGCATACATTGAATTTAGCCTCAGGATAATTTTTGTTCCATCAAGTGTCAATTTATTTCTGATGGTTTAAATTGTATAAGTTTCTAACCACATCTTATGACCATTGTTTAATGTAGAGTATGGCTACACCATGAACATAACCGAGAAGAGCGACGTGTACAGTTATGGAGTGGTTTTACTAGAGATACTAAGTGGAAGAAGTGCAGTTCAAGATGGACAACACGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAAGAAGATGGCAAGCTTTGAACCAGCTGTGTCAATACTAGATACAAAGCTTCAAAGCCTACCGGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATCGCTATGTTTTGTGTAAATTCTTCACCAGTTGAACGTCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAAACCTCTCAACCTTTAATCAAGCAGTCATCAACTCAATGCTGA

Protein sequence

>MS.gene60739.t1

MENISVTSLFFCLLFFSITKIQVITSLSPDGQALLSLATSSPSLLSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGSLSSLQFLFLNSNRLTGTIPQQLSNLTSLEVLCLQDNLLNGSIPSQLGSLKSLQQFRIGGNPFLTGELPSQLGLLTNLTTFGAAATSLSGSIPSSFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNNLTGSIPFQLGKLQKLTSLLLWGNTLSGKIPSEISNCSSLVIFDVSSNDLTGEIPGDFGKLVVLEQLHLSDNSLSGEIPWQLSNCTSLATVQLDKNQLSGTIPYQLGKLKVLQSFFLWGNLVSGTIPSSFGNCSELYALDLSRNKLTGSIPDEIFSLQKLSKLLLLGNSLSGRLPASVAKCKSLVRLRVGENQLSGEIPKEIGQLQNLVFLDLYMNHFSGRLPVEIANITVLELLDAHNNYLGGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGSIPPEIGHVTSLTISLDLSSNSFIGEIPDSMSALTQLQSLDLSRNMLFGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFKTLTSSSYLQNRNLCQSVDGTTCSSGLIQKNGLKSAKTIAMITIILASVTIIVIASWILVTRSNHQYNVEKALRISGSASGAEDFSYPWTFIPFQKLNFSIENILDCLKDENVIGKGCSGVVYKAEMPRGEVIAVKKLWKTSKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPSILHRDVKCNNILLDSKFEAYIADFGLAKLMNSPNYHHAMSRVAEYGYTMNITEKSDVYSYGVVLLEILSGRSAVQDGQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQC