Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60780.t1 | XP_024641537.1 | 89.8 | 491 | 38 | 3 | 1 | 490 | 33 | 512 | 2.20E-244 | 855.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60780.t1 | Q94F09 | 58.0 | 407 | 166 | 4 | 490 | 892 | 34 | 439 | 8.9e-130 | 466.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60780.t1 | A0A2P5Y848 | 52.6 | 907 | 270 | 13 | 8 | 828 | 9 | 841 | 1.6e-241 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052108 | MS.gene60780 | 0.804172 | 2.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60780.t1 | MTR_1g096810 | 86.873 | 518 | 39 | 3 | 1 | 490 | 1 | 517 | 0.0 | 898 |
| MS.gene60780.t1 | MTR_1g096790 | 97.519 | 403 | 10 | 0 | 490 | 892 | 28 | 430 | 0.0 | 805 |
| MS.gene60780.t1 | MTR_1g096870 | 79.310 | 493 | 82 | 8 | 1 | 490 | 57 | 532 | 0.0 | 762 |
| MS.gene60780.t1 | MTR_3g088220 | 41.096 | 146 | 78 | 3 | 486 | 623 | 31 | 176 | 5.59e-27 | 116 |
| MS.gene60780.t1 | MTR_1g087520 | 39.316 | 117 | 68 | 2 | 493 | 607 | 34 | 149 | 1.63e-20 | 94.7 |
| MS.gene60780.t1 | MTR_2g094180 | 29.586 | 338 | 206 | 10 | 490 | 812 | 80 | 400 | 8.40e-20 | 94.7 |
| MS.gene60780.t1 | MTR_7g112040 | 38.938 | 113 | 66 | 2 | 490 | 600 | 26 | 137 | 4.89e-18 | 87.4 |
| MS.gene60780.t1 | MTR_7g112040 | 38.017 | 121 | 66 | 4 | 478 | 590 | 127 | 246 | 1.80e-15 | 79.3 |
| MS.gene60780.t1 | MTR_4g059450 | 30.693 | 303 | 182 | 9 | 490 | 777 | 102 | 391 | 2.77e-17 | 87.0 |
| MS.gene60780.t1 | MTR_5g084930 | 40.351 | 114 | 59 | 4 | 490 | 601 | 30 | 136 | 1.50e-16 | 83.6 |
| MS.gene60780.t1 | MTR_5g084930 | 29.515 | 227 | 128 | 7 | 493 | 694 | 163 | 382 | 3.17e-15 | 79.7 |
| MS.gene60780.t1 | MTR_4g080800 | 33.065 | 124 | 68 | 2 | 488 | 596 | 141 | 264 | 4.83e-14 | 76.3 |
| MS.gene60780.t1 | MTR_1g098660 | 37.234 | 94 | 54 | 3 | 496 | 587 | 68 | 158 | 1.34e-13 | 70.1 |
| MS.gene60780.t1 | MTR_2g021750 | 39.130 | 115 | 61 | 5 | 490 | 602 | 30 | 137 | 2.25e-13 | 73.2 |
| MS.gene60780.t1 | MTR_2g101880 | 29.600 | 125 | 88 | 0 | 493 | 617 | 67 | 191 | 2.48e-12 | 70.9 |
| MS.gene60780.t1 | MTR_2g083260 | 31.452 | 124 | 70 | 2 | 488 | 596 | 141 | 264 | 3.26e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60780.t1 | AT1G35620 | 60.197 | 407 | 157 | 4 | 490 | 892 | 34 | 439 | 1.16e-172 | 508 |
| MS.gene60780.t1 | AT1G22660 | 51.657 | 513 | 214 | 9 | 2 | 492 | 74 | 574 | 1.32e-160 | 483 |
| MS.gene60780.t1 | AT1G22660 | 51.765 | 510 | 212 | 9 | 2 | 489 | 79 | 576 | 2.65e-160 | 482 |
| MS.gene60780.t1 | AT1G22660 | 51.765 | 510 | 212 | 9 | 2 | 489 | 74 | 571 | 2.96e-160 | 482 |
| MS.gene60780.t1 | AT1G22660 | 51.674 | 478 | 198 | 8 | 2 | 458 | 74 | 539 | 9.42e-145 | 439 |
| MS.gene60780.t1 | AT1G22660 | 51.674 | 478 | 198 | 8 | 2 | 458 | 79 | 544 | 1.42e-144 | 439 |
| MS.gene60780.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 4.81e-26 | 113 |
| MS.gene60780.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 5.45e-26 | 113 |
| MS.gene60780.t1 | AT1G77510 | 33.766 | 231 | 122 | 9 | 486 | 699 | 27 | 243 | 2.13e-24 | 108 |
| MS.gene60780.t1 | AT3G54960 | 28.618 | 304 | 199 | 8 | 484 | 777 | 95 | 390 | 8.47e-21 | 97.8 |
| MS.gene60780.t1 | AT3G54960 | 28.618 | 304 | 199 | 8 | 484 | 777 | 95 | 390 | 1.72e-20 | 97.1 |
| MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 2.32e-20 | 92.4 |
| MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 3.54e-15 | 77.0 |
| MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 4.37e-20 | 92.8 |
| MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.02e-15 | 78.2 |
| MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 4.74e-20 | 93.6 |
| MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 3.87e-15 | 78.6 |
| MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 5.08e-20 | 92.8 |
| MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.32e-15 | 78.2 |
| MS.gene60780.t1 | AT5G60640 | 27.181 | 298 | 199 | 7 | 490 | 777 | 105 | 394 | 2.17e-18 | 90.1 |
| MS.gene60780.t1 | AT5G60640 | 27.181 | 298 | 199 | 7 | 490 | 777 | 105 | 394 | 2.66e-18 | 90.1 |
| MS.gene60780.t1 | AT5G60640 | 39.806 | 103 | 60 | 1 | 490 | 592 | 105 | 205 | 4.07e-18 | 89.4 |
| MS.gene60780.t1 | AT1G04980 | 27.354 | 223 | 138 | 5 | 493 | 694 | 172 | 391 | 1.91e-15 | 80.5 |
| MS.gene60780.t1 | AT1G04980 | 38.235 | 102 | 58 | 3 | 490 | 589 | 34 | 132 | 2.14e-14 | 77.0 |
| MS.gene60780.t1 | AT2G32920 | 38.095 | 105 | 60 | 3 | 490 | 592 | 32 | 133 | 4.70e-15 | 79.0 |
| MS.gene60780.t1 | AT2G32920 | 27.876 | 226 | 131 | 7 | 493 | 693 | 167 | 385 | 2.25e-13 | 73.9 |
| MS.gene60780.t1 | AT1G52260 | 31.579 | 133 | 82 | 2 | 502 | 634 | 91 | 214 | 7.73e-13 | 72.4 |
| MS.gene60780.t1 | AT1G76760 | 35.106 | 94 | 57 | 2 | 499 | 591 | 75 | 165 | 4.72e-12 | 65.9 |
| MS.gene60780.t1 | AT1G43560 | 36.735 | 98 | 57 | 3 | 496 | 591 | 66 | 160 | 1.25e-11 | 64.3 |
| MS.gene60780.t1 | AT3G16110 | 26.562 | 128 | 94 | 0 | 490 | 617 | 77 | 204 | 1.97e-11 | 68.2 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTAAATGAGTTCTTTA+TGG | 0.104563 | 1.2:-71874576 | None:intergenic |
| GCAAATCGTGACTTAATATT+TGG | 0.148394 | 1.2:+71873207 | MS.gene60780:CDS |
| TTCCCAGTATATATAGGTTT+TGG | 0.148916 | 1.2:+71871562 | MS.gene60780:CDS |
| ACTTGGCGCATCTTCCTTAA+TGG | 0.207550 | 1.2:-71859976 | None:intergenic |
| CAATAACTTAACAAGTTCTT+TGG | 0.226371 | 1.2:-71873169 | None:intergenic |
| GCTCATTGTACAGTGGATTA+AGG | 0.240385 | 1.2:-71871714 | None:intergenic |
| CATGGCTGTTTCCAGATGTT+TGG | 0.264489 | 1.2:-71860338 | None:intergenic |
| GAGAATTCTATATTGAAATT+AGG | 0.273825 | 1.2:+71865819 | MS.gene60780:CDS |
| AACCCAAAACCTATATATAC+TGG | 0.277212 | 1.2:-71871565 | None:intergenic |
| CATCCTTAGCTTTAAACTTA+AGG | 0.277781 | 1.2:-71864315 | None:intergenic |
| CAGGCTTTGCATTTCTTACT+TGG | 0.278007 | 1.2:+71862877 | MS.gene60780:intron |
| ATGAAGGTTCTACAGCTTAA+AGG | 0.290334 | 1.2:+71866609 | MS.gene60780:CDS |
| TAACAGGCCTTGAGAAAGTA+TGG | 0.307530 | 1.2:+71866553 | MS.gene60780:intron |
| ACTCTAGACGAAGATCTAAA+AGG | 0.310095 | 1.2:+71861712 | MS.gene60780:CDS |
| ATCCTTAGCTTTAAACTTAA+GGG | 0.310893 | 1.2:-71864314 | None:intergenic |
| TTCTAATGTCGAAAGATCTA+TGG | 0.336526 | 1.2:-71874619 | None:intergenic |
| GGAGGGATTTAACAATTAAC+AGG | 0.340752 | 1.2:+71860817 | MS.gene60780:CDS |
| TGAGCATGAACTTGTCATTT+CGG | 0.343659 | 1.2:+71862499 | MS.gene60780:CDS |
| CGGTGGTTGGGTTCGCGATA+AGG | 0.349966 | 1.2:+71859758 | MS.gene60780:CDS |
| AGGTTGACTCTCCAAGTAAA+TGG | 0.353469 | 1.2:-71862919 | None:intergenic |
| AAGCATTGAAGGAGAGGATC+AGG | 0.355842 | 1.2:+71874508 | MS.gene60780:CDS |
| TAGGTTGATCTAATGATATC+TGG | 0.363930 | 1.2:+71862407 | MS.gene60780:intron |
| AGAGTATTTGTTGTCCATTA+AGG | 0.365181 | 1.2:+71859962 | MS.gene60780:CDS |
| TCACTATCTTTCCAGACTTA+AGG | 0.371981 | 1.2:-71861482 | None:intergenic |
| CCCATGATTAAACAGCAAAA+TGG | 0.374127 | 1.2:-71871404 | None:intergenic |
| AAAACAATATCTCATTCCTT+TGG | 0.382499 | 1.2:+71873053 | MS.gene60780:CDS |
| TCTCGAGCCCGGGTAGTAAC+AGG | 0.393632 | 1.2:+71864577 | MS.gene60780:CDS |
| CATCCGAGTCGCCGGTGGTT+GGG | 0.393906 | 1.2:+71859746 | MS.gene60780:CDS |
| GACTTAATATTTGGTTATGT+TGG | 0.399153 | 1.2:+71873216 | MS.gene60780:CDS |
| CATCAACTTAAGTGTCTCAT+AGG | 0.401128 | 1.2:-71873088 | None:intergenic |
| CTTCGATAAGATTCCTGCCT+TGG | 0.402929 | 1.2:+71871687 | MS.gene60780:CDS |
| TTCCTGTCTCTTCTCGAGCC+CGG | 0.407394 | 1.2:+71864566 | MS.gene60780:CDS |
| TAAAGGAGGGCCGCTTGTTA+AGG | 0.408420 | 1.2:+71866626 | MS.gene60780:CDS |
| CTCATTGTACAGTGGATTAA+GGG | 0.409749 | 1.2:-71871713 | None:intergenic |
| CCTGTCTAACAGCAAACATT+TGG | 0.417187 | 1.2:+71860771 | MS.gene60780:intron |
| TCGAAACTTATCCATTTACT+TGG | 0.417191 | 1.2:+71862908 | MS.gene60780:CDS |
| TTGATTCCTTATCTCGCATC+TGG | 0.419382 | 1.2:+71864493 | MS.gene60780:CDS |
| AAGAACTTGTTAAGTTATTG+AGG | 0.421672 | 1.2:+71873172 | MS.gene60780:CDS |
| AGGTAGCCTTTGGAGGTAAA+GGG | 0.423004 | 1.2:-71861506 | None:intergenic |
| GCCTGTACTTGCAGCCTTGA+AGG | 0.424459 | 1.2:+71871202 | MS.gene60780:CDS |
| CACTGAGAAGTCCAAACATC+TGG | 0.427279 | 1.2:+71860327 | MS.gene60780:CDS |
| TCATCAAGAAAGGTAGCCTT+TGG | 0.432647 | 1.2:-71861516 | None:intergenic |
| GAAATAAACTAACCTTCAAA+TGG | 0.433269 | 1.2:-71871754 | None:intergenic |
| TTAATGCTTATTCAAACCTT+AGG | 0.438716 | 1.2:+71874674 | MS.gene60780:CDS |
| TGCAAGCATCAAATCTTGAT+TGG | 0.439627 | 1.2:+71864524 | MS.gene60780:CDS |
| TAAAGAAGATGAGTATCTTT+CGG | 0.440421 | 1.2:+71873311 | MS.gene60780:CDS |
| CAAATCACTAAATTTCTAGA+AGG | 0.440849 | 1.2:+71874536 | MS.gene60780:CDS |
| GTCCCTTAAGTTTAAAGCTA+AGG | 0.442147 | 1.2:+71864312 | MS.gene60780:CDS |
| ATCATCTCCTTTACTACCTA+AGG | 0.442205 | 1.2:-71874690 | None:intergenic |
| ACAGCCATGATGCATTTGTT+TGG | 0.447840 | 1.2:+71860352 | MS.gene60780:CDS |
| TTCATCCTTCGATCACATCT+TGG | 0.449806 | 1.2:+71870357 | MS.gene60780:CDS |
| TCCTTCAAGGCTGCAAGTAC+AGG | 0.452113 | 1.2:-71871203 | None:intergenic |
| AGAACTTGTTAAGTTATTGA+GGG | 0.452218 | 1.2:+71873173 | MS.gene60780:CDS |
| GGAATCTCAGACCTTAAGTC+TGG | 0.455277 | 1.2:+71861471 | MS.gene60780:intron |
| GTGCTCATTCTCAGTGTCAA+TGG | 0.457140 | 1.2:-71865757 | None:intergenic |
| CCTTCTGAGGTAGAGCTGCT+TGG | 0.459228 | 1.2:-71874755 | None:intergenic |
| TCCTGTCTCTTCTCGAGCCC+GGG | 0.462525 | 1.2:+71864567 | MS.gene60780:CDS |
| TTGGTCCGTGATATTCAGTT+GGG | 0.463126 | 1.2:-71871429 | None:intergenic |
| ACATCCGAGTCGCCGGTGGT+TGG | 0.466850 | 1.2:+71859745 | MS.gene60780:CDS |
| AGAATGATGCGATTGACAAC+AGG | 0.467447 | 1.2:-71864286 | None:intergenic |
| AAGGTAGCCTTTGGAGGTAA+AGG | 0.469713 | 1.2:-71861507 | None:intergenic |
| TGGTTGATTTCTACGCTCCT+TGG | 0.470298 | 1.2:+71870377 | MS.gene60780:CDS |
| CTTGGTCCGTGATATTCAGT+TGG | 0.471784 | 1.2:-71871430 | None:intergenic |
| ATTCAAACCTTAGGTAGTAA+AGG | 0.472205 | 1.2:+71874683 | MS.gene60780:CDS |
| AGCAGAATCTGAATCGAGAA+TGG | 0.476767 | 1.2:-71871506 | None:intergenic |
| AATGAGTATAGGTTCCTTCA+AGG | 0.477797 | 1.2:-71871216 | None:intergenic |
| ACCATAAAGAACTCATTTAG+TGG | 0.489496 | 1.2:+71874575 | MS.gene60780:CDS |
| TAGATCTTTCGACATTAGAA+TGG | 0.490056 | 1.2:+71874622 | MS.gene60780:CDS |
| ATATAAGTCATTGCTTTGAC+AGG | 0.491867 | 1.2:-71862437 | None:intergenic |
| GATGTGATCGAAGGATGAAA+TGG | 0.493338 | 1.2:-71870353 | None:intergenic |
| AAGAGCGATATCAATGTCAT+TGG | 0.495630 | 1.2:-71859901 | None:intergenic |
| GTTCGATTATTTCGCGAACA+TGG | 0.498815 | 1.2:-71859653 | None:intergenic |
| GTCAATGGGATGTAATAGAA+TGG | 0.505816 | 1.2:-71865742 | None:intergenic |
| TAACTCATCACTTACAGTAA+AGG | 0.506382 | 1.2:-71862939 | None:intergenic |
| TTAAGTGTCTCATAGGATAC+AGG | 0.508310 | 1.2:-71873081 | None:intergenic |
| ACAAGAATTTATATGACAAT+CGG | 0.509597 | 1.2:-71864468 | None:intergenic |
| TGAAATGGCGGAATCGAAGT+TGG | 0.511617 | 1.2:-71870338 | None:intergenic |
| AGTTCATTGATAGAAAAGTT+CGG | 0.512411 | 1.2:+71871592 | MS.gene60780:CDS |
| GGAAGAAAAGAGTATAAAGA+AGG | 0.513510 | 1.2:+71874779 | MS.gene60780:CDS |
| GTTGGTTCAGAAAGCATTGA+AGG | 0.515841 | 1.2:+71874497 | MS.gene60780:CDS |
| ACAAGTAAATCAGCTTTCCT+TGG | 0.516496 | 1.2:-71871448 | None:intergenic |
| TCCTCACCAGATGCGAGATA+AGG | 0.516952 | 1.2:-71864499 | None:intergenic |
| TGCTCATTCTCAGTGTCAAT+GGG | 0.518454 | 1.2:-71865756 | None:intergenic |
| AAACAGCAAAATGGTTGGAT+AGG | 0.519002 | 1.2:-71871395 | None:intergenic |
| TGATTAAACAGCAAAATGGT+TGG | 0.523489 | 1.2:-71871400 | None:intergenic |
| GAGAGTACCAAACCAAGAAA+AGG | 0.523714 | 1.2:+71874724 | MS.gene60780:CDS |
| CTTTCAATAACATGAACACT+TGG | 0.524394 | 1.2:-71859993 | None:intergenic |
| TTACGTCCCATACTTTCTCA+AGG | 0.532992 | 1.2:-71866560 | None:intergenic |
| AACATTTGGCACAGCTGAAG+AGG | 0.534245 | 1.2:+71860785 | MS.gene60780:CDS |
| TAAAGCTAAGGATGCAGAAA+CGG | 0.535556 | 1.2:+71864324 | MS.gene60780:CDS |
| ATCGCTCTTGATCATATGAC+GGG | 0.535570 | 1.2:+71859915 | MS.gene60780:CDS |
| TCGTAATGTATCATCAAGAA+AGG | 0.537218 | 1.2:-71861526 | None:intergenic |
| GAACCCAACCACCGGCGACT+CGG | 0.541532 | 1.2:-71859749 | None:intergenic |
| TCAAGAAAGGTAGCCTTTGG+AGG | 0.542033 | 1.2:-71861513 | None:intergenic |
| GGATTAAGGGAAACCAAGGC+AGG | 0.543644 | 1.2:-71871700 | None:intergenic |
| CAGCTGAAGAGGACGCATAC+AGG | 0.543956 | 1.2:+71860796 | MS.gene60780:CDS |
| GAAATGACAAGTTCATGCTC+AGG | 0.547241 | 1.2:-71862497 | None:intergenic |
| GACGTAAAACCATTGCTCAA+TGG | 0.549065 | 1.2:+71866576 | MS.gene60780:CDS |
| TTAGGTAGTAAAGGAGATGA+TGG | 0.552978 | 1.2:+71874692 | MS.gene60780:CDS |
| TTCTGTCTTACAGTTAGATG+CGG | 0.553009 | 1.2:+71871175 | MS.gene60780:intron |
| AAGATATCTGTTTAATGCCG+TGG | 0.556378 | 1.2:+71865797 | MS.gene60780:CDS |
| CAAGTGTTCATGTTATTGAA+AGG | 0.557723 | 1.2:+71859994 | MS.gene60780:CDS |
| TTCAGAAAGCATTGAAGGAG+AGG | 0.562407 | 1.2:+71874502 | MS.gene60780:CDS |
| AGAGCACATTGGAAGAAAGA+AGG | 0.564100 | 1.2:+71861819 | MS.gene60780:CDS |
| ACACTTCACCTGTTACTACC+CGG | 0.565349 | 1.2:-71864585 | None:intergenic |
| ACCCAAAACCTATATATACT+GGG | 0.565590 | 1.2:-71871564 | None:intergenic |
| TTATGTTGGAGTTAAACAGC+TGG | 0.567225 | 1.2:+71873230 | MS.gene60780:CDS |
| CAATGGCAAAGATGTTATGA+AGG | 0.569409 | 1.2:+71866593 | MS.gene60780:CDS |
| AGTTGATGAAAGCTGATGGT+AGG | 0.573136 | 1.2:+71873103 | MS.gene60780:CDS |
| GATTTCTACGCTCCTTGGTG+TGG | 0.573164 | 1.2:+71870382 | MS.gene60780:CDS |
| ACCCGGGCTCGAGAAGAGAC+AGG | 0.573258 | 1.2:-71864568 | None:intergenic |
| CCAAGCAGCTCTACCTCAGA+AGG | 0.573325 | 1.2:+71874755 | MS.gene60780:CDS |
| TGAGAATGAGCACTCACAGT+TGG | 0.574390 | 1.2:+71865767 | MS.gene60780:CDS |
| AAAACTGACATCCGAGTCGC+CGG | 0.575143 | 1.2:+71859738 | MS.gene60780:CDS |
| ACATCTTTGCCATTGAGCAA+TGG | 0.575889 | 1.2:-71866585 | None:intergenic |
| TTATTCTATAATATCAACAC+TGG | 0.583059 | 1.2:+71861341 | MS.gene60780:CDS |
| ATTAAAACTACCAAATCGAA+TGG | 0.584832 | 1.2:-71861559 | None:intergenic |
| CACTTCACCTGTTACTACCC+GGG | 0.589530 | 1.2:-71864584 | None:intergenic |
| GATACCAAACAAATGCATCA+TGG | 0.590689 | 1.2:-71860356 | None:intergenic |
| TAGGATACAGGCACAGCCAA+AGG | 0.591538 | 1.2:-71873069 | None:intergenic |
| TATCGCTCTTGATCATATGA+CGG | 0.595376 | 1.2:+71859914 | MS.gene60780:CDS |
| TCCTTATCTCGCATCTGGTG+AGG | 0.596574 | 1.2:+71864498 | MS.gene60780:CDS |
| AGTGACCCCTTTACCTCCAA+AGG | 0.597062 | 1.2:+71861500 | MS.gene60780:CDS |
| ATCAACCAAGATGTGATCGA+AGG | 0.597452 | 1.2:-71870362 | None:intergenic |
| TGGATAAATTGCATCAGTGA+TGG | 0.598373 | 1.2:-71874599 | None:intergenic |
| TCATTTCGGATGAATGTGAA+AGG | 0.599280 | 1.2:+71862513 | MS.gene60780:CDS |
| CTTATCGCGAACCCAACCAC+CGG | 0.602971 | 1.2:-71859757 | None:intergenic |
| GAGGGCCGCTTGTTAAGGAG+TGG | 0.607649 | 1.2:+71866631 | MS.gene60780:CDS |
| AAGGTTCTACAGCTTAAAGG+AGG | 0.608193 | 1.2:+71866612 | MS.gene60780:CDS |
| TTTCTAGAAGGATACAGAGA+AGG | 0.608440 | 1.2:+71874548 | MS.gene60780:CDS |
| CTTAAGTTGATGAAAGCTGA+TGG | 0.612346 | 1.2:+71873099 | MS.gene60780:CDS |
| TATCAGAGTGTGTATTCGAA+AGG | 0.613485 | 1.2:+71861780 | MS.gene60780:CDS |
| GGTAGCCTTTGGAGGTAAAG+GGG | 0.617642 | 1.2:-71861505 | None:intergenic |
| CCATAAAGAACTCATTTAGT+GGG | 0.620397 | 1.2:+71874576 | MS.gene60780:CDS |
| AGCATTGAAGGAGAGGATCA+GGG | 0.623276 | 1.2:+71874509 | MS.gene60780:CDS |
| CTGAAGAGGACGCATACAGG+AGG | 0.629044 | 1.2:+71860799 | MS.gene60780:CDS |
| AGCAGCTCTACCTCAGAAGG+TGG | 0.629957 | 1.2:+71874758 | MS.gene60780:CDS |
| CTGCAAGCGTCTCTCTCCTG+AGG | 0.631362 | 1.2:+71870408 | MS.gene60780:CDS |
| AGGGCCGCTTGTTAAGGAGT+GGG | 0.632505 | 1.2:+71866632 | MS.gene60780:CDS |
| AACAGGCCTTGAGAAAGTAT+GGG | 0.633357 | 1.2:+71866554 | MS.gene60780:intron |
| CAACTGAATATCACGGACCA+AGG | 0.634637 | 1.2:+71871431 | MS.gene60780:CDS |
| CTTACCCACTCCTTAACAAG+CGG | 0.640610 | 1.2:-71866636 | None:intergenic |
| TGTCTTACAGTTAGATGCGG+CGG | 0.642474 | 1.2:+71871178 | MS.gene60780:intron |
| CAGTGGATTAAGGGAAACCA+AGG | 0.642707 | 1.2:-71871704 | None:intergenic |
| ACTGACATCCGAGTCGCCGG+TGG | 0.643443 | 1.2:+71859741 | MS.gene60780:CDS |
| TTTCAATATAGAATTCTCCA+CGG | 0.653066 | 1.2:-71865814 | None:intergenic |
| GTGATCGAAGGATGAAATGG+CGG | 0.654275 | 1.2:-71870350 | None:intergenic |
| GGGGTCCCAACTGAATATCA+CGG | 0.654837 | 1.2:+71871424 | MS.gene60780:CDS |
| TGAAGAGGACGCATACAGGA+GGG | 0.656560 | 1.2:+71860800 | MS.gene60780:CDS |
| AAAATTAGCAGAGAGCACAT+TGG | 0.660100 | 1.2:+71861808 | MS.gene60780:CDS |
| TTATAAGTGTTATTTCTGAG+TGG | 0.665154 | 1.2:-71863138 | None:intergenic |
| GTGTTACGCTCATTGTACAG+TGG | 0.669544 | 1.2:-71871721 | None:intergenic |
| AGACGATTGCAACGTTCCTG+AGG | 0.674727 | 1.2:+71860417 | MS.gene60780:CDS |
| AGGTTCTACAGCTTAAAGGA+GGG | 0.682681 | 1.2:+71866613 | MS.gene60780:CDS |
| CGCTTGCAGTGACCACACCA+AGG | 0.682818 | 1.2:-71870394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71859636 | 71874817 | 71859636 | ID=MS.gene60780 |
| chr1.2 | mRNA | 71859636 | 71874817 | 71859636 | ID=MS.gene60780.t1;Parent=MS.gene60780 |
| chr1.2 | exon | 71859636 | 71859779 | 71859636 | ID=MS.gene60780.t1.exon1;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71859636 | 71859779 | 71859636 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71859885 | 71860015 | 71859885 | ID=MS.gene60780.t1.exon2;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71859885 | 71860015 | 71859885 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71860324 | 71860438 | 71860324 | ID=MS.gene60780.t1.exon3;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71860324 | 71860438 | 71860324 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71860783 | 71860838 | 71860783 | ID=MS.gene60780.t1.exon4;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71860783 | 71860838 | 71860783 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71861340 | 71861389 | 71861340 | ID=MS.gene60780.t1.exon5;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71861340 | 71861389 | 71861340 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71861472 | 71861570 | 71861472 | ID=MS.gene60780.t1.exon6;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71861472 | 71861570 | 71861472 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71861695 | 71861840 | 71861695 | ID=MS.gene60780.t1.exon7;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71861695 | 71861840 | 71861695 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71862410 | 71862534 | 71862410 | ID=MS.gene60780.t1.exon8;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71862410 | 71862534 | 71862410 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71862880 | 71862946 | 71862880 | ID=MS.gene60780.t1.exon9;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71862880 | 71862946 | 71862880 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71863096 | 71863176 | 71863096 | ID=MS.gene60780.t1.exon10;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71863096 | 71863176 | 71863096 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71864283 | 71864345 | 71864283 | ID=MS.gene60780.t1.exon11;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71864283 | 71864345 | 71864283 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71864454 | 71864598 | 71864454 | ID=MS.gene60780.t1.exon12;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71864454 | 71864598 | 71864454 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71865691 | 71865840 | 71865691 | ID=MS.gene60780.t1.exon13;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71865691 | 71865840 | 71865691 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71866559 | 71866653 | 71866559 | ID=MS.gene60780.t1.exon14;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71866559 | 71866653 | 71866559 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71870319 | 71870429 | 71870319 | ID=MS.gene60780.t1.exon15;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71870319 | 71870429 | 71870319 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71871188 | 71871291 | 71871188 | ID=MS.gene60780.t1.exon16;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71871188 | 71871291 | 71871188 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71871393 | 71871763 | 71871393 | ID=MS.gene60780.t1.exon17;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71871393 | 71871763 | 71871393 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71873031 | 71873332 | 71873031 | ID=MS.gene60780.t1.exon18;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71873031 | 71873332 | 71873031 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| chr1.2 | exon | 71874494 | 71874817 | 71874494 | ID=MS.gene60780.t1.exon19;Parent=MS.gene60780.t1 |
| chr1.2 | CDS | 71874494 | 71874817 | 71874494 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
| Gene Sequence |
| Protein sequence |