Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60780.t1 | XP_024641537.1 | 89.8 | 491 | 38 | 3 | 1 | 490 | 33 | 512 | 2.20E-244 | 855.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60780.t1 | Q94F09 | 58.0 | 407 | 166 | 4 | 490 | 892 | 34 | 439 | 8.9e-130 | 466.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60780.t1 | A0A2P5Y848 | 52.6 | 907 | 270 | 13 | 8 | 828 | 9 | 841 | 1.6e-241 | 845.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052108 | MS.gene60780 | 0.804172 | 2.45E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60780.t1 | MTR_1g096810 | 86.873 | 518 | 39 | 3 | 1 | 490 | 1 | 517 | 0.0 | 898 |
MS.gene60780.t1 | MTR_1g096790 | 97.519 | 403 | 10 | 0 | 490 | 892 | 28 | 430 | 0.0 | 805 |
MS.gene60780.t1 | MTR_1g096870 | 79.310 | 493 | 82 | 8 | 1 | 490 | 57 | 532 | 0.0 | 762 |
MS.gene60780.t1 | MTR_3g088220 | 41.096 | 146 | 78 | 3 | 486 | 623 | 31 | 176 | 5.59e-27 | 116 |
MS.gene60780.t1 | MTR_1g087520 | 39.316 | 117 | 68 | 2 | 493 | 607 | 34 | 149 | 1.63e-20 | 94.7 |
MS.gene60780.t1 | MTR_2g094180 | 29.586 | 338 | 206 | 10 | 490 | 812 | 80 | 400 | 8.40e-20 | 94.7 |
MS.gene60780.t1 | MTR_7g112040 | 38.938 | 113 | 66 | 2 | 490 | 600 | 26 | 137 | 4.89e-18 | 87.4 |
MS.gene60780.t1 | MTR_7g112040 | 38.017 | 121 | 66 | 4 | 478 | 590 | 127 | 246 | 1.80e-15 | 79.3 |
MS.gene60780.t1 | MTR_4g059450 | 30.693 | 303 | 182 | 9 | 490 | 777 | 102 | 391 | 2.77e-17 | 87.0 |
MS.gene60780.t1 | MTR_5g084930 | 40.351 | 114 | 59 | 4 | 490 | 601 | 30 | 136 | 1.50e-16 | 83.6 |
MS.gene60780.t1 | MTR_5g084930 | 29.515 | 227 | 128 | 7 | 493 | 694 | 163 | 382 | 3.17e-15 | 79.7 |
MS.gene60780.t1 | MTR_4g080800 | 33.065 | 124 | 68 | 2 | 488 | 596 | 141 | 264 | 4.83e-14 | 76.3 |
MS.gene60780.t1 | MTR_1g098660 | 37.234 | 94 | 54 | 3 | 496 | 587 | 68 | 158 | 1.34e-13 | 70.1 |
MS.gene60780.t1 | MTR_2g021750 | 39.130 | 115 | 61 | 5 | 490 | 602 | 30 | 137 | 2.25e-13 | 73.2 |
MS.gene60780.t1 | MTR_2g101880 | 29.600 | 125 | 88 | 0 | 493 | 617 | 67 | 191 | 2.48e-12 | 70.9 |
MS.gene60780.t1 | MTR_2g083260 | 31.452 | 124 | 70 | 2 | 488 | 596 | 141 | 264 | 3.26e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60780.t1 | AT1G35620 | 60.197 | 407 | 157 | 4 | 490 | 892 | 34 | 439 | 1.16e-172 | 508 |
MS.gene60780.t1 | AT1G22660 | 51.657 | 513 | 214 | 9 | 2 | 492 | 74 | 574 | 1.32e-160 | 483 |
MS.gene60780.t1 | AT1G22660 | 51.765 | 510 | 212 | 9 | 2 | 489 | 79 | 576 | 2.65e-160 | 482 |
MS.gene60780.t1 | AT1G22660 | 51.765 | 510 | 212 | 9 | 2 | 489 | 74 | 571 | 2.96e-160 | 482 |
MS.gene60780.t1 | AT1G22660 | 51.674 | 478 | 198 | 8 | 2 | 458 | 74 | 539 | 9.42e-145 | 439 |
MS.gene60780.t1 | AT1G22660 | 51.674 | 478 | 198 | 8 | 2 | 458 | 79 | 544 | 1.42e-144 | 439 |
MS.gene60780.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 4.81e-26 | 113 |
MS.gene60780.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 5.45e-26 | 113 |
MS.gene60780.t1 | AT1G77510 | 33.766 | 231 | 122 | 9 | 486 | 699 | 27 | 243 | 2.13e-24 | 108 |
MS.gene60780.t1 | AT3G54960 | 28.618 | 304 | 199 | 8 | 484 | 777 | 95 | 390 | 8.47e-21 | 97.8 |
MS.gene60780.t1 | AT3G54960 | 28.618 | 304 | 199 | 8 | 484 | 777 | 95 | 390 | 1.72e-20 | 97.1 |
MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 2.32e-20 | 92.4 |
MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 3.54e-15 | 77.0 |
MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 4.37e-20 | 92.8 |
MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.02e-15 | 78.2 |
MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 4.74e-20 | 93.6 |
MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 3.87e-15 | 78.6 |
MS.gene60780.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 5.08e-20 | 92.8 |
MS.gene60780.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.32e-15 | 78.2 |
MS.gene60780.t1 | AT5G60640 | 27.181 | 298 | 199 | 7 | 490 | 777 | 105 | 394 | 2.17e-18 | 90.1 |
MS.gene60780.t1 | AT5G60640 | 27.181 | 298 | 199 | 7 | 490 | 777 | 105 | 394 | 2.66e-18 | 90.1 |
MS.gene60780.t1 | AT5G60640 | 39.806 | 103 | 60 | 1 | 490 | 592 | 105 | 205 | 4.07e-18 | 89.4 |
MS.gene60780.t1 | AT1G04980 | 27.354 | 223 | 138 | 5 | 493 | 694 | 172 | 391 | 1.91e-15 | 80.5 |
MS.gene60780.t1 | AT1G04980 | 38.235 | 102 | 58 | 3 | 490 | 589 | 34 | 132 | 2.14e-14 | 77.0 |
MS.gene60780.t1 | AT2G32920 | 38.095 | 105 | 60 | 3 | 490 | 592 | 32 | 133 | 4.70e-15 | 79.0 |
MS.gene60780.t1 | AT2G32920 | 27.876 | 226 | 131 | 7 | 493 | 693 | 167 | 385 | 2.25e-13 | 73.9 |
MS.gene60780.t1 | AT1G52260 | 31.579 | 133 | 82 | 2 | 502 | 634 | 91 | 214 | 7.73e-13 | 72.4 |
MS.gene60780.t1 | AT1G76760 | 35.106 | 94 | 57 | 2 | 499 | 591 | 75 | 165 | 4.72e-12 | 65.9 |
MS.gene60780.t1 | AT1G43560 | 36.735 | 98 | 57 | 3 | 496 | 591 | 66 | 160 | 1.25e-11 | 64.3 |
MS.gene60780.t1 | AT3G16110 | 26.562 | 128 | 94 | 0 | 490 | 617 | 77 | 204 | 1.97e-11 | 68.2 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCACTAAATGAGTTCTTTA+TGG | 0.104563 | 1.2:-71874576 | None:intergenic |
GCAAATCGTGACTTAATATT+TGG | 0.148394 | 1.2:+71873207 | MS.gene60780:CDS |
TTCCCAGTATATATAGGTTT+TGG | 0.148916 | 1.2:+71871562 | MS.gene60780:CDS |
ACTTGGCGCATCTTCCTTAA+TGG | 0.207550 | 1.2:-71859976 | None:intergenic |
CAATAACTTAACAAGTTCTT+TGG | 0.226371 | 1.2:-71873169 | None:intergenic |
GCTCATTGTACAGTGGATTA+AGG | 0.240385 | 1.2:-71871714 | None:intergenic |
CATGGCTGTTTCCAGATGTT+TGG | 0.264489 | 1.2:-71860338 | None:intergenic |
GAGAATTCTATATTGAAATT+AGG | 0.273825 | 1.2:+71865819 | MS.gene60780:CDS |
AACCCAAAACCTATATATAC+TGG | 0.277212 | 1.2:-71871565 | None:intergenic |
CATCCTTAGCTTTAAACTTA+AGG | 0.277781 | 1.2:-71864315 | None:intergenic |
CAGGCTTTGCATTTCTTACT+TGG | 0.278007 | 1.2:+71862877 | MS.gene60780:intron |
ATGAAGGTTCTACAGCTTAA+AGG | 0.290334 | 1.2:+71866609 | MS.gene60780:CDS |
TAACAGGCCTTGAGAAAGTA+TGG | 0.307530 | 1.2:+71866553 | MS.gene60780:intron |
ACTCTAGACGAAGATCTAAA+AGG | 0.310095 | 1.2:+71861712 | MS.gene60780:CDS |
ATCCTTAGCTTTAAACTTAA+GGG | 0.310893 | 1.2:-71864314 | None:intergenic |
TTCTAATGTCGAAAGATCTA+TGG | 0.336526 | 1.2:-71874619 | None:intergenic |
GGAGGGATTTAACAATTAAC+AGG | 0.340752 | 1.2:+71860817 | MS.gene60780:CDS |
TGAGCATGAACTTGTCATTT+CGG | 0.343659 | 1.2:+71862499 | MS.gene60780:CDS |
CGGTGGTTGGGTTCGCGATA+AGG | 0.349966 | 1.2:+71859758 | MS.gene60780:CDS |
AGGTTGACTCTCCAAGTAAA+TGG | 0.353469 | 1.2:-71862919 | None:intergenic |
AAGCATTGAAGGAGAGGATC+AGG | 0.355842 | 1.2:+71874508 | MS.gene60780:CDS |
TAGGTTGATCTAATGATATC+TGG | 0.363930 | 1.2:+71862407 | MS.gene60780:intron |
AGAGTATTTGTTGTCCATTA+AGG | 0.365181 | 1.2:+71859962 | MS.gene60780:CDS |
TCACTATCTTTCCAGACTTA+AGG | 0.371981 | 1.2:-71861482 | None:intergenic |
CCCATGATTAAACAGCAAAA+TGG | 0.374127 | 1.2:-71871404 | None:intergenic |
AAAACAATATCTCATTCCTT+TGG | 0.382499 | 1.2:+71873053 | MS.gene60780:CDS |
TCTCGAGCCCGGGTAGTAAC+AGG | 0.393632 | 1.2:+71864577 | MS.gene60780:CDS |
CATCCGAGTCGCCGGTGGTT+GGG | 0.393906 | 1.2:+71859746 | MS.gene60780:CDS |
GACTTAATATTTGGTTATGT+TGG | 0.399153 | 1.2:+71873216 | MS.gene60780:CDS |
CATCAACTTAAGTGTCTCAT+AGG | 0.401128 | 1.2:-71873088 | None:intergenic |
CTTCGATAAGATTCCTGCCT+TGG | 0.402929 | 1.2:+71871687 | MS.gene60780:CDS |
TTCCTGTCTCTTCTCGAGCC+CGG | 0.407394 | 1.2:+71864566 | MS.gene60780:CDS |
TAAAGGAGGGCCGCTTGTTA+AGG | 0.408420 | 1.2:+71866626 | MS.gene60780:CDS |
CTCATTGTACAGTGGATTAA+GGG | 0.409749 | 1.2:-71871713 | None:intergenic |
CCTGTCTAACAGCAAACATT+TGG | 0.417187 | 1.2:+71860771 | MS.gene60780:intron |
TCGAAACTTATCCATTTACT+TGG | 0.417191 | 1.2:+71862908 | MS.gene60780:CDS |
TTGATTCCTTATCTCGCATC+TGG | 0.419382 | 1.2:+71864493 | MS.gene60780:CDS |
AAGAACTTGTTAAGTTATTG+AGG | 0.421672 | 1.2:+71873172 | MS.gene60780:CDS |
AGGTAGCCTTTGGAGGTAAA+GGG | 0.423004 | 1.2:-71861506 | None:intergenic |
GCCTGTACTTGCAGCCTTGA+AGG | 0.424459 | 1.2:+71871202 | MS.gene60780:CDS |
CACTGAGAAGTCCAAACATC+TGG | 0.427279 | 1.2:+71860327 | MS.gene60780:CDS |
TCATCAAGAAAGGTAGCCTT+TGG | 0.432647 | 1.2:-71861516 | None:intergenic |
GAAATAAACTAACCTTCAAA+TGG | 0.433269 | 1.2:-71871754 | None:intergenic |
TTAATGCTTATTCAAACCTT+AGG | 0.438716 | 1.2:+71874674 | MS.gene60780:CDS |
TGCAAGCATCAAATCTTGAT+TGG | 0.439627 | 1.2:+71864524 | MS.gene60780:CDS |
TAAAGAAGATGAGTATCTTT+CGG | 0.440421 | 1.2:+71873311 | MS.gene60780:CDS |
CAAATCACTAAATTTCTAGA+AGG | 0.440849 | 1.2:+71874536 | MS.gene60780:CDS |
GTCCCTTAAGTTTAAAGCTA+AGG | 0.442147 | 1.2:+71864312 | MS.gene60780:CDS |
ATCATCTCCTTTACTACCTA+AGG | 0.442205 | 1.2:-71874690 | None:intergenic |
ACAGCCATGATGCATTTGTT+TGG | 0.447840 | 1.2:+71860352 | MS.gene60780:CDS |
TTCATCCTTCGATCACATCT+TGG | 0.449806 | 1.2:+71870357 | MS.gene60780:CDS |
TCCTTCAAGGCTGCAAGTAC+AGG | 0.452113 | 1.2:-71871203 | None:intergenic |
AGAACTTGTTAAGTTATTGA+GGG | 0.452218 | 1.2:+71873173 | MS.gene60780:CDS |
GGAATCTCAGACCTTAAGTC+TGG | 0.455277 | 1.2:+71861471 | MS.gene60780:intron |
GTGCTCATTCTCAGTGTCAA+TGG | 0.457140 | 1.2:-71865757 | None:intergenic |
CCTTCTGAGGTAGAGCTGCT+TGG | 0.459228 | 1.2:-71874755 | None:intergenic |
TCCTGTCTCTTCTCGAGCCC+GGG | 0.462525 | 1.2:+71864567 | MS.gene60780:CDS |
TTGGTCCGTGATATTCAGTT+GGG | 0.463126 | 1.2:-71871429 | None:intergenic |
ACATCCGAGTCGCCGGTGGT+TGG | 0.466850 | 1.2:+71859745 | MS.gene60780:CDS |
AGAATGATGCGATTGACAAC+AGG | 0.467447 | 1.2:-71864286 | None:intergenic |
AAGGTAGCCTTTGGAGGTAA+AGG | 0.469713 | 1.2:-71861507 | None:intergenic |
TGGTTGATTTCTACGCTCCT+TGG | 0.470298 | 1.2:+71870377 | MS.gene60780:CDS |
CTTGGTCCGTGATATTCAGT+TGG | 0.471784 | 1.2:-71871430 | None:intergenic |
ATTCAAACCTTAGGTAGTAA+AGG | 0.472205 | 1.2:+71874683 | MS.gene60780:CDS |
AGCAGAATCTGAATCGAGAA+TGG | 0.476767 | 1.2:-71871506 | None:intergenic |
AATGAGTATAGGTTCCTTCA+AGG | 0.477797 | 1.2:-71871216 | None:intergenic |
ACCATAAAGAACTCATTTAG+TGG | 0.489496 | 1.2:+71874575 | MS.gene60780:CDS |
TAGATCTTTCGACATTAGAA+TGG | 0.490056 | 1.2:+71874622 | MS.gene60780:CDS |
ATATAAGTCATTGCTTTGAC+AGG | 0.491867 | 1.2:-71862437 | None:intergenic |
GATGTGATCGAAGGATGAAA+TGG | 0.493338 | 1.2:-71870353 | None:intergenic |
AAGAGCGATATCAATGTCAT+TGG | 0.495630 | 1.2:-71859901 | None:intergenic |
GTTCGATTATTTCGCGAACA+TGG | 0.498815 | 1.2:-71859653 | None:intergenic |
GTCAATGGGATGTAATAGAA+TGG | 0.505816 | 1.2:-71865742 | None:intergenic |
TAACTCATCACTTACAGTAA+AGG | 0.506382 | 1.2:-71862939 | None:intergenic |
TTAAGTGTCTCATAGGATAC+AGG | 0.508310 | 1.2:-71873081 | None:intergenic |
ACAAGAATTTATATGACAAT+CGG | 0.509597 | 1.2:-71864468 | None:intergenic |
TGAAATGGCGGAATCGAAGT+TGG | 0.511617 | 1.2:-71870338 | None:intergenic |
AGTTCATTGATAGAAAAGTT+CGG | 0.512411 | 1.2:+71871592 | MS.gene60780:CDS |
GGAAGAAAAGAGTATAAAGA+AGG | 0.513510 | 1.2:+71874779 | MS.gene60780:CDS |
GTTGGTTCAGAAAGCATTGA+AGG | 0.515841 | 1.2:+71874497 | MS.gene60780:CDS |
ACAAGTAAATCAGCTTTCCT+TGG | 0.516496 | 1.2:-71871448 | None:intergenic |
TCCTCACCAGATGCGAGATA+AGG | 0.516952 | 1.2:-71864499 | None:intergenic |
TGCTCATTCTCAGTGTCAAT+GGG | 0.518454 | 1.2:-71865756 | None:intergenic |
AAACAGCAAAATGGTTGGAT+AGG | 0.519002 | 1.2:-71871395 | None:intergenic |
TGATTAAACAGCAAAATGGT+TGG | 0.523489 | 1.2:-71871400 | None:intergenic |
GAGAGTACCAAACCAAGAAA+AGG | 0.523714 | 1.2:+71874724 | MS.gene60780:CDS |
CTTTCAATAACATGAACACT+TGG | 0.524394 | 1.2:-71859993 | None:intergenic |
TTACGTCCCATACTTTCTCA+AGG | 0.532992 | 1.2:-71866560 | None:intergenic |
AACATTTGGCACAGCTGAAG+AGG | 0.534245 | 1.2:+71860785 | MS.gene60780:CDS |
TAAAGCTAAGGATGCAGAAA+CGG | 0.535556 | 1.2:+71864324 | MS.gene60780:CDS |
ATCGCTCTTGATCATATGAC+GGG | 0.535570 | 1.2:+71859915 | MS.gene60780:CDS |
TCGTAATGTATCATCAAGAA+AGG | 0.537218 | 1.2:-71861526 | None:intergenic |
GAACCCAACCACCGGCGACT+CGG | 0.541532 | 1.2:-71859749 | None:intergenic |
TCAAGAAAGGTAGCCTTTGG+AGG | 0.542033 | 1.2:-71861513 | None:intergenic |
GGATTAAGGGAAACCAAGGC+AGG | 0.543644 | 1.2:-71871700 | None:intergenic |
CAGCTGAAGAGGACGCATAC+AGG | 0.543956 | 1.2:+71860796 | MS.gene60780:CDS |
GAAATGACAAGTTCATGCTC+AGG | 0.547241 | 1.2:-71862497 | None:intergenic |
GACGTAAAACCATTGCTCAA+TGG | 0.549065 | 1.2:+71866576 | MS.gene60780:CDS |
TTAGGTAGTAAAGGAGATGA+TGG | 0.552978 | 1.2:+71874692 | MS.gene60780:CDS |
TTCTGTCTTACAGTTAGATG+CGG | 0.553009 | 1.2:+71871175 | MS.gene60780:intron |
AAGATATCTGTTTAATGCCG+TGG | 0.556378 | 1.2:+71865797 | MS.gene60780:CDS |
CAAGTGTTCATGTTATTGAA+AGG | 0.557723 | 1.2:+71859994 | MS.gene60780:CDS |
TTCAGAAAGCATTGAAGGAG+AGG | 0.562407 | 1.2:+71874502 | MS.gene60780:CDS |
AGAGCACATTGGAAGAAAGA+AGG | 0.564100 | 1.2:+71861819 | MS.gene60780:CDS |
ACACTTCACCTGTTACTACC+CGG | 0.565349 | 1.2:-71864585 | None:intergenic |
ACCCAAAACCTATATATACT+GGG | 0.565590 | 1.2:-71871564 | None:intergenic |
TTATGTTGGAGTTAAACAGC+TGG | 0.567225 | 1.2:+71873230 | MS.gene60780:CDS |
CAATGGCAAAGATGTTATGA+AGG | 0.569409 | 1.2:+71866593 | MS.gene60780:CDS |
AGTTGATGAAAGCTGATGGT+AGG | 0.573136 | 1.2:+71873103 | MS.gene60780:CDS |
GATTTCTACGCTCCTTGGTG+TGG | 0.573164 | 1.2:+71870382 | MS.gene60780:CDS |
ACCCGGGCTCGAGAAGAGAC+AGG | 0.573258 | 1.2:-71864568 | None:intergenic |
CCAAGCAGCTCTACCTCAGA+AGG | 0.573325 | 1.2:+71874755 | MS.gene60780:CDS |
TGAGAATGAGCACTCACAGT+TGG | 0.574390 | 1.2:+71865767 | MS.gene60780:CDS |
AAAACTGACATCCGAGTCGC+CGG | 0.575143 | 1.2:+71859738 | MS.gene60780:CDS |
ACATCTTTGCCATTGAGCAA+TGG | 0.575889 | 1.2:-71866585 | None:intergenic |
TTATTCTATAATATCAACAC+TGG | 0.583059 | 1.2:+71861341 | MS.gene60780:CDS |
ATTAAAACTACCAAATCGAA+TGG | 0.584832 | 1.2:-71861559 | None:intergenic |
CACTTCACCTGTTACTACCC+GGG | 0.589530 | 1.2:-71864584 | None:intergenic |
GATACCAAACAAATGCATCA+TGG | 0.590689 | 1.2:-71860356 | None:intergenic |
TAGGATACAGGCACAGCCAA+AGG | 0.591538 | 1.2:-71873069 | None:intergenic |
TATCGCTCTTGATCATATGA+CGG | 0.595376 | 1.2:+71859914 | MS.gene60780:CDS |
TCCTTATCTCGCATCTGGTG+AGG | 0.596574 | 1.2:+71864498 | MS.gene60780:CDS |
AGTGACCCCTTTACCTCCAA+AGG | 0.597062 | 1.2:+71861500 | MS.gene60780:CDS |
ATCAACCAAGATGTGATCGA+AGG | 0.597452 | 1.2:-71870362 | None:intergenic |
TGGATAAATTGCATCAGTGA+TGG | 0.598373 | 1.2:-71874599 | None:intergenic |
TCATTTCGGATGAATGTGAA+AGG | 0.599280 | 1.2:+71862513 | MS.gene60780:CDS |
CTTATCGCGAACCCAACCAC+CGG | 0.602971 | 1.2:-71859757 | None:intergenic |
GAGGGCCGCTTGTTAAGGAG+TGG | 0.607649 | 1.2:+71866631 | MS.gene60780:CDS |
AAGGTTCTACAGCTTAAAGG+AGG | 0.608193 | 1.2:+71866612 | MS.gene60780:CDS |
TTTCTAGAAGGATACAGAGA+AGG | 0.608440 | 1.2:+71874548 | MS.gene60780:CDS |
CTTAAGTTGATGAAAGCTGA+TGG | 0.612346 | 1.2:+71873099 | MS.gene60780:CDS |
TATCAGAGTGTGTATTCGAA+AGG | 0.613485 | 1.2:+71861780 | MS.gene60780:CDS |
GGTAGCCTTTGGAGGTAAAG+GGG | 0.617642 | 1.2:-71861505 | None:intergenic |
CCATAAAGAACTCATTTAGT+GGG | 0.620397 | 1.2:+71874576 | MS.gene60780:CDS |
AGCATTGAAGGAGAGGATCA+GGG | 0.623276 | 1.2:+71874509 | MS.gene60780:CDS |
CTGAAGAGGACGCATACAGG+AGG | 0.629044 | 1.2:+71860799 | MS.gene60780:CDS |
AGCAGCTCTACCTCAGAAGG+TGG | 0.629957 | 1.2:+71874758 | MS.gene60780:CDS |
CTGCAAGCGTCTCTCTCCTG+AGG | 0.631362 | 1.2:+71870408 | MS.gene60780:CDS |
AGGGCCGCTTGTTAAGGAGT+GGG | 0.632505 | 1.2:+71866632 | MS.gene60780:CDS |
AACAGGCCTTGAGAAAGTAT+GGG | 0.633357 | 1.2:+71866554 | MS.gene60780:intron |
CAACTGAATATCACGGACCA+AGG | 0.634637 | 1.2:+71871431 | MS.gene60780:CDS |
CTTACCCACTCCTTAACAAG+CGG | 0.640610 | 1.2:-71866636 | None:intergenic |
TGTCTTACAGTTAGATGCGG+CGG | 0.642474 | 1.2:+71871178 | MS.gene60780:intron |
CAGTGGATTAAGGGAAACCA+AGG | 0.642707 | 1.2:-71871704 | None:intergenic |
ACTGACATCCGAGTCGCCGG+TGG | 0.643443 | 1.2:+71859741 | MS.gene60780:CDS |
TTTCAATATAGAATTCTCCA+CGG | 0.653066 | 1.2:-71865814 | None:intergenic |
GTGATCGAAGGATGAAATGG+CGG | 0.654275 | 1.2:-71870350 | None:intergenic |
GGGGTCCCAACTGAATATCA+CGG | 0.654837 | 1.2:+71871424 | MS.gene60780:CDS |
TGAAGAGGACGCATACAGGA+GGG | 0.656560 | 1.2:+71860800 | MS.gene60780:CDS |
AAAATTAGCAGAGAGCACAT+TGG | 0.660100 | 1.2:+71861808 | MS.gene60780:CDS |
TTATAAGTGTTATTTCTGAG+TGG | 0.665154 | 1.2:-71863138 | None:intergenic |
GTGTTACGCTCATTGTACAG+TGG | 0.669544 | 1.2:-71871721 | None:intergenic |
AGACGATTGCAACGTTCCTG+AGG | 0.674727 | 1.2:+71860417 | MS.gene60780:CDS |
AGGTTCTACAGCTTAAAGGA+GGG | 0.682681 | 1.2:+71866613 | MS.gene60780:CDS |
CGCTTGCAGTGACCACACCA+AGG | 0.682818 | 1.2:-71870394 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 71859636 | 71874817 | 71859636 | ID=MS.gene60780 |
chr1.2 | mRNA | 71859636 | 71874817 | 71859636 | ID=MS.gene60780.t1;Parent=MS.gene60780 |
chr1.2 | exon | 71859636 | 71859779 | 71859636 | ID=MS.gene60780.t1.exon1;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71859636 | 71859779 | 71859636 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71859885 | 71860015 | 71859885 | ID=MS.gene60780.t1.exon2;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71859885 | 71860015 | 71859885 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71860324 | 71860438 | 71860324 | ID=MS.gene60780.t1.exon3;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71860324 | 71860438 | 71860324 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71860783 | 71860838 | 71860783 | ID=MS.gene60780.t1.exon4;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71860783 | 71860838 | 71860783 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71861340 | 71861389 | 71861340 | ID=MS.gene60780.t1.exon5;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71861340 | 71861389 | 71861340 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71861472 | 71861570 | 71861472 | ID=MS.gene60780.t1.exon6;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71861472 | 71861570 | 71861472 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71861695 | 71861840 | 71861695 | ID=MS.gene60780.t1.exon7;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71861695 | 71861840 | 71861695 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71862410 | 71862534 | 71862410 | ID=MS.gene60780.t1.exon8;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71862410 | 71862534 | 71862410 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71862880 | 71862946 | 71862880 | ID=MS.gene60780.t1.exon9;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71862880 | 71862946 | 71862880 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71863096 | 71863176 | 71863096 | ID=MS.gene60780.t1.exon10;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71863096 | 71863176 | 71863096 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71864283 | 71864345 | 71864283 | ID=MS.gene60780.t1.exon11;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71864283 | 71864345 | 71864283 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71864454 | 71864598 | 71864454 | ID=MS.gene60780.t1.exon12;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71864454 | 71864598 | 71864454 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71865691 | 71865840 | 71865691 | ID=MS.gene60780.t1.exon13;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71865691 | 71865840 | 71865691 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71866559 | 71866653 | 71866559 | ID=MS.gene60780.t1.exon14;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71866559 | 71866653 | 71866559 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71870319 | 71870429 | 71870319 | ID=MS.gene60780.t1.exon15;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71870319 | 71870429 | 71870319 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71871188 | 71871291 | 71871188 | ID=MS.gene60780.t1.exon16;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71871188 | 71871291 | 71871188 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71871393 | 71871763 | 71871393 | ID=MS.gene60780.t1.exon17;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71871393 | 71871763 | 71871393 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71873031 | 71873332 | 71873031 | ID=MS.gene60780.t1.exon18;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71873031 | 71873332 | 71873031 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
chr1.2 | exon | 71874494 | 71874817 | 71874494 | ID=MS.gene60780.t1.exon19;Parent=MS.gene60780.t1 |
chr1.2 | CDS | 71874494 | 71874817 | 71874494 | ID=cds.MS.gene60780.t1;Parent=MS.gene60780.t1 |
Gene Sequence |
Protein sequence |