Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61078.t1 | XP_003627895.1 | 97.7 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 1.90E-96 | 361.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61078.t1 | Q9LHK1 | 72.0 | 175 | 46 | 2 | 1 | 172 | 1 | 175 | 6.9e-71 | 268.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61078.t1 | G7LGT1 | 97.7 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 1.4e-96 | 361.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene61078 | 0.803757 | 2.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61078.t1 | MTR_8g039690 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 7.65e-126 | 351 |
| MS.gene61078.t1 | MTR_7g084380 | 55.952 | 168 | 71 | 2 | 1 | 165 | 1 | 168 | 2.02e-58 | 182 |
| MS.gene61078.t1 | MTR_3g065330 | 52.500 | 160 | 65 | 3 | 4 | 160 | 13 | 164 | 1.10e-49 | 159 |
| MS.gene61078.t1 | MTR_7g084380 | 52.667 | 150 | 68 | 2 | 19 | 165 | 15 | 164 | 8.89e-47 | 152 |
| MS.gene61078.t1 | MTR_5g078020 | 47.134 | 157 | 74 | 2 | 5 | 160 | 14 | 162 | 5.16e-44 | 144 |
| MS.gene61078.t1 | MTR_6g070920 | 47.134 | 157 | 74 | 2 | 1 | 157 | 73 | 220 | 1.53e-43 | 144 |
| MS.gene61078.t1 | MTR_1g032290 | 47.468 | 158 | 75 | 3 | 1 | 157 | 1 | 151 | 3.69e-42 | 139 |
| MS.gene61078.t1 | MTR_3g065330 | 53.237 | 139 | 54 | 3 | 4 | 139 | 35 | 165 | 6.27e-42 | 138 |
| MS.gene61078.t1 | MTR_8g105140 | 48.428 | 159 | 72 | 5 | 1 | 157 | 1 | 151 | 9.22e-42 | 137 |
| MS.gene61078.t1 | MTR_6g070920 | 46.939 | 147 | 69 | 2 | 1 | 147 | 73 | 210 | 7.10e-40 | 134 |
| MS.gene61078.t1 | MTR_1g078390 | 87.879 | 66 | 8 | 0 | 1 | 66 | 1 | 66 | 2.93e-39 | 128 |
| MS.gene61078.t1 | MTR_6g070920 | 56.322 | 87 | 35 | 1 | 1 | 87 | 73 | 156 | 7.42e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61078.t1 | AT3G12600 | 72.000 | 175 | 46 | 2 | 1 | 172 | 1 | 175 | 4.16e-81 | 238 |
| MS.gene61078.t1 | AT3G12600 | 70.732 | 164 | 45 | 2 | 12 | 172 | 3 | 166 | 3.48e-74 | 220 |
| MS.gene61078.t1 | AT3G26690 | 57.143 | 168 | 65 | 4 | 1 | 161 | 1 | 168 | 2.04e-54 | 171 |
| MS.gene61078.t1 | AT3G26690 | 57.143 | 168 | 65 | 4 | 1 | 161 | 1 | 168 | 2.04e-54 | 171 |
| MS.gene61078.t1 | AT1G12880 | 54.070 | 172 | 73 | 3 | 1 | 166 | 1 | 172 | 2.04e-52 | 166 |
| MS.gene61078.t1 | AT1G18300 | 48.428 | 159 | 75 | 2 | 3 | 160 | 42 | 194 | 7.75e-48 | 154 |
| MS.gene61078.t1 | AT1G14860 | 50.311 | 161 | 73 | 3 | 1 | 161 | 1 | 154 | 3.67e-46 | 149 |
| MS.gene61078.t1 | AT2G01670 | 50.955 | 157 | 70 | 3 | 1 | 157 | 6 | 155 | 9.61e-46 | 148 |
| MS.gene61078.t1 | AT1G73540 | 47.500 | 160 | 71 | 4 | 3 | 160 | 43 | 191 | 1.11e-43 | 144 |
Find 44 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAGGTGTGTTCCCTTT+AGG | 0.253270 | 8.2:-60550174 | MS.gene61078:intron |
| GCAGCTTTACACAACCCTTC+TGG | 0.339256 | 8.2:+60548225 | None:intergenic |
| GATGGTTATCGTCTTGTTGC+TGG | 0.345818 | 8.2:-60551854 | MS.gene61078:CDS |
| GTCTGATTTGGTTGCTCGTA+CGG | 0.347628 | 8.2:-60551900 | MS.gene61078:CDS |
| ATCCAGCCAACTCCTATTTC+TGG | 0.347905 | 8.2:+60548149 | None:intergenic |
| TGTTTCTATTATGTCTGATT+TGG | 0.353265 | 8.2:-60551912 | None:intergenic |
| CTGAGCAAAATACCAGAAAT+AGG | 0.370277 | 8.2:-60548161 | MS.gene61078:CDS |
| CTGGACTGAACTCATCTTGA+TGG | 0.375486 | 8.2:+60548244 | None:intergenic |
| TCAAGGAGGAACTTGAACTA+TGG | 0.378915 | 8.2:-60548185 | MS.gene61078:CDS |
| CTCTGGAACGCTTCTGCAAA+TGG | 0.393459 | 8.2:-60548080 | MS.gene61078:CDS |
| GTCTTGGATACTATGAGTTT+AGG | 0.399550 | 8.2:-60548275 | MS.gene61078:CDS |
| TCTGATTTGGTTGCTCGTAC+GGG | 0.430251 | 8.2:-60551899 | MS.gene61078:CDS |
| AAGCACTTCAACAATCTTCT+CGG | 0.437562 | 8.2:+60550123 | None:intergenic |
| TGAGTGGATGAGGGACGCTC+TGG | 0.483748 | 8.2:-60548097 | MS.gene61078:CDS |
| AGGAGTTCGAGGAGACCTAA+TGG | 0.494041 | 8.2:-60548870 | MS.gene61078:intron |
| GCCTCCGACATGAGTGGATG+AGG | 0.497019 | 8.2:-60548107 | MS.gene61078:CDS |
| TACCAGAAATAGGAGTTGGC+TGG | 0.502905 | 8.2:-60548151 | MS.gene61078:CDS |
| AAAATACCAGAAATAGGAGT+TGG | 0.506282 | 8.2:-60548155 | MS.gene61078:CDS |
| TAGGAGTTGGCTGGATGTAT+CGG | 0.513352 | 8.2:-60548142 | MS.gene61078:CDS |
| ATAGAAGAAGCAGGAGTTCG+AGG | 0.515037 | 8.2:-60548881 | MS.gene61078:CDS |
| ATGGTTATCGTCTTGTTGCT+GGG | 0.519282 | 8.2:-60551853 | MS.gene61078:intron |
| TGGACTGAACTCATCTTGAT+GGG | 0.521294 | 8.2:+60548245 | None:intergenic |
| AATGTTTGCTTTGTTTGTCA+AGG | 0.532894 | 8.2:-60548202 | MS.gene61078:CDS |
| CATCAGCAACGCTATGAAGA+TGG | 0.535027 | 8.2:-60551872 | MS.gene61078:CDS |
| AGAGAAGCTATAGAAGAAGC+AGG | 0.539294 | 8.2:-60548890 | MS.gene61078:CDS |
| ATGGCATGAGGAAAAGTTTG+TGG | 0.551089 | 8.2:-60548061 | MS.gene61078:CDS |
| CAAGATGAGTTCAGTCCAGA+AGG | 0.552506 | 8.2:-60548240 | MS.gene61078:CDS |
| ATTTGGTTGCTCGTACGGGT+CGG | 0.565256 | 8.2:-60551895 | MS.gene61078:CDS |
| AACAAAAGACCTGGTCCACT+AGG | 0.578546 | 8.2:+60550088 | None:intergenic |
| TGATGAAACTGTTGAGGAGG+CGG | 0.578996 | 8.2:-60548918 | MS.gene61078:CDS |
| ATTAATTCACCTAGTGGACC+AGG | 0.583292 | 8.2:-60550097 | MS.gene61078:CDS |
| GTTTGCTTTGTTTGTCAAGG+AGG | 0.584229 | 8.2:-60548199 | MS.gene61078:CDS |
| CTTATGATTAATTCACCTAG+TGG | 0.602210 | 8.2:-60550103 | MS.gene61078:CDS |
| ACCTTTGGAAACAAAAGACC+TGG | 0.602229 | 8.2:+60550079 | None:intergenic |
| CCCTCATCCACTCATGTCGG+AGG | 0.604589 | 8.2:+60548106 | None:intergenic |
| GAATGATGAAACTGTTGAGG+AGG | 0.612719 | 8.2:-60548921 | MS.gene61078:CDS |
| TTGATAGCCTCCGACATGAG+TGG | 0.618790 | 8.2:-60548113 | MS.gene61078:CDS |
| CATGAGGAAAAGTTTGTGGA+TGG | 0.623665 | 8.2:-60548057 | MS.gene61078:CDS |
| ACGCTTCTGCAAATGGCATG+AGG | 0.629815 | 8.2:-60548073 | MS.gene61078:CDS |
| CGTCCCTCATCCACTCATGT+CGG | 0.636052 | 8.2:+60548103 | None:intergenic |
| CCTCCGACATGAGTGGATGA+GGG | 0.641158 | 8.2:-60548106 | MS.gene61078:CDS |
| GAGTTGGCTGGATGTATCGG+AGG | 0.659992 | 8.2:-60548139 | MS.gene61078:CDS |
| AAGATGAGTTCAGTCCAGAA+GGG | 0.667305 | 8.2:-60548239 | MS.gene61078:CDS |
| GGAGAATGATGAAACTGTTG+AGG | 0.693121 | 8.2:-60548924 | MS.gene61078:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATATATATATTTTTA+TGG | - | chr8.2:60548768-60548787 | MS.gene61078:intron | 0.0% |
| !! | ATAAAAATAAAAAAGAAAAG+GGG | + | chr8.2:60548135-60548154 | None:intergenic | 10.0% |
| !! | ATATTTGAATGATTAATATT+TGG | - | chr8.2:60548658-60548677 | MS.gene61078:intron | 10.0% |
| !!! | AATTAATAATCATTGTTTTA+GGG | - | chr8.2:60548174-60548193 | MS.gene61078:CDS | 10.0% |
| !!! | TAATTAATAATCATTGTTTT+AGG | - | chr8.2:60548173-60548192 | MS.gene61078:CDS | 10.0% |
| !!! | TTTATAAAGAAGTATTATAA+AGG | - | chr8.2:60548894-60548913 | MS.gene61078:CDS | 10.0% |
| !! | AATTATGAAATGAATTTGAT+TGG | - | chr8.2:60549582-60549601 | MS.gene61078:intron | 15.0% |
| !! | TAAAAATAAAAAAGAAAAGG+GGG | + | chr8.2:60548134-60548153 | None:intergenic | 15.0% |
| !!! | AAAAATTTCACTTATTTCTT+TGG | + | chr8.2:60550193-60550212 | None:intergenic | 15.0% |
| !!! | AATAAGTGAAATTTTTCTTA+TGG | - | chr8.2:60550197-60550216 | MS.gene61078:intron | 15.0% |
| !!! | ACATTTAAAATATGATGAAT+TGG | - | chr8.2:60551343-60551362 | MS.gene61078:intron | 15.0% |
| !!! | ATTAATAATCATTGTTTTAG+GGG | - | chr8.2:60548175-60548194 | MS.gene61078:CDS | 15.0% |
| !!! | TAAAAGTTGATTAATGAAAA+AGG | + | chr8.2:60549647-60549666 | None:intergenic | 15.0% |
| !!! | TGATAAAAATATTTTCAGAT+AGG | - | chr8.2:60549670-60549689 | MS.gene61078:intron | 15.0% |
| !!! | TGTTATTTTAATTGTAAACA+AGG | - | chr8.2:60551561-60551580 | MS.gene61078:intron | 15.0% |
| !! | AAAAATAAAAAAGAAAAGGG+GGG | + | chr8.2:60548133-60548152 | None:intergenic | 20.0% |
| !! | AATGGCTGAAATTAAATTTA+AGG | - | chr8.2:60548432-60548451 | MS.gene61078:intron | 20.0% |
| !! | ACCATTATAATTAGTATAAG+AGG | + | chr8.2:60550067-60550086 | None:intergenic | 20.0% |
| !! | ACCTCTTATACTAATTATAA+TGG | - | chr8.2:60550063-60550082 | MS.gene61078:intron | 20.0% |
| !! | AGCTTCATTAATATCATAAT+GGG | - | chr8.2:60551152-60551171 | MS.gene61078:intron | 20.0% |
| !! | GGAAAATAATAAACAAAGAT+AGG | + | chr8.2:60549332-60549351 | None:intergenic | 20.0% |
| !! | GTTCTTAGAAAACTAAAAAT+AGG | + | chr8.2:60549147-60549166 | None:intergenic | 20.0% |
| !! | TAGCTTCATTAATATCATAA+TGG | - | chr8.2:60551151-60551170 | MS.gene61078:intron | 20.0% |
| !! | TATTTCAAACATTATACCTT+TGG | + | chr8.2:60549888-60549907 | None:intergenic | 20.0% |
| !! | TGCTAAATTGATTAAAACAA+TGG | - | chr8.2:60549031-60549050 | MS.gene61078:intron | 20.0% |
| !! | TTCAAAAGAAGAAAAAAACA+TGG | + | chr8.2:60548967-60548986 | None:intergenic | 20.0% |
| !! | TTCTCTAATATCTACTATTA+TGG | + | chr8.2:60550638-60550657 | None:intergenic | 20.0% |
| !!! | ATATTTTGATGATCTCATAA+TGG | - | chr8.2:60551188-60551207 | MS.gene61078:intron | 20.0% |
| !!! | GAAAAGAATGTTTTTTGTTT+TGG | - | chr8.2:60548218-60548237 | MS.gene61078:CDS | 20.0% |
| !!! | TAAATGTAATTTTAATCCTC+TGG | - | chr8.2:60549408-60549427 | MS.gene61078:intron | 20.0% |
| !!! | TATTTTGATGATCTCATAAT+GGG | - | chr8.2:60551189-60551208 | MS.gene61078:intron | 20.0% |
| !!! | TCTCTATTATGGTTTTTTAA+GGG | - | chr8.2:60548345-60548364 | MS.gene61078:intron | 20.0% |
| !!! | TCTTTCTAATTAAAAGTATC+AGG | + | chr8.2:60550224-60550243 | None:intergenic | 20.0% |
| !!! | TTAATTTGATGATATACGAA+TGG | - | chr8.2:60548414-60548433 | MS.gene61078:intron | 20.0% |
| !!! | TTCTTTTCAGTCATTATATT+GGG | - | chr8.2:60550009-60550028 | MS.gene61078:intron | 20.0% |
| !!! | TTGTACTATAATTCTTTTCT+TGG | - | chr8.2:60550269-60550288 | MS.gene61078:intron | 20.0% |
| !!! | TTTATTTGTGTGTTTGTTTT+TGG | - | chr8.2:60548288-60548307 | MS.gene61078:intron | 20.0% |
| !!! | TTTTAAACAGTAACTTAATC+TGG | - | chr8.2:60550910-60550929 | MS.gene61078:intron | 20.0% |
| !!! | TTTTTCTTATATACCTGTTT+TGG | - | chr8.2:60549711-60549730 | MS.gene61078:intron | 20.0% |
| ! | AAAATAGGATTAGGATTACT+TGG | - | chr8.2:60548815-60548834 | MS.gene61078:intron | 25.0% |
| ! | AAATCACTCTAACTACAAAT+GGG | - | chr8.2:60549611-60549630 | MS.gene61078:intron | 25.0% |
| ! | AATACTAAAAAGTAAACGAC+TGG | - | chr8.2:60549540-60549559 | MS.gene61078:intron | 25.0% |
| ! | AATTCATATTTCTCACCATT+AGG | + | chr8.2:60551097-60551116 | None:intergenic | 25.0% |
| ! | AGCTATAAAATACAACTCTA+AGG | + | chr8.2:60549184-60549203 | None:intergenic | 25.0% |
| ! | AGTCATTATATTGGGAAATT+TGG | - | chr8.2:60550017-60550036 | MS.gene61078:intron | 25.0% |
| ! | CATATGAAAGTCAATGTATA+AGG | - | chr8.2:60548371-60548390 | MS.gene61078:intron | 25.0% |
| ! | GTTTAGGTAATAAAATAGCT+TGG | - | chr8.2:60550770-60550789 | MS.gene61078:intron | 25.0% |
| ! | TAAGACAGATACTAAACAAT+TGG | + | chr8.2:60549505-60549524 | None:intergenic | 25.0% |
| ! | TATATGTATCAGTAACATGT+AGG | + | chr8.2:60549281-60549300 | None:intergenic | 25.0% |
| ! | TCTATTGAGATTATATGCAA+TGG | - | chr8.2:60548632-60548651 | MS.gene61078:intron | 25.0% |
| ! | TTGAAAACTAGTTAGGTAAA+TGG | - | chr8.2:60550522-60550541 | MS.gene61078:intron | 25.0% |
| !! | AAGTTTTCTTAACTTTGCAT+GGG | - | chr8.2:60551295-60551314 | MS.gene61078:intron | 25.0% |
| !! | ATACATATATACTCTGAAGA+AGG | - | chr8.2:60550419-60550438 | MS.gene61078:intron | 25.0% |
| !! | CATTTTCACAAAATAGGATT+AGG | - | chr8.2:60548806-60548825 | MS.gene61078:intron | 25.0% |
| !! | GTTCTTTTCAGTCATTATAT+TGG | - | chr8.2:60550008-60550027 | MS.gene61078:intron | 25.0% |
| !! | TAATTAGTCTATTTAGCTAC+AGG | + | chr8.2:60548858-60548877 | None:intergenic | 25.0% |
| !! | TACATATATACTCTGAAGAA+GGG | - | chr8.2:60550420-60550439 | MS.gene61078:intron | 25.0% |
| !! | TTCTACTTTCTACATGATTT+TGG | - | chr8.2:60551448-60551467 | MS.gene61078:intron | 25.0% |
| !!! | ATTTTTATGGTCAACTTGTT+AGG | - | chr8.2:60548781-60548800 | MS.gene61078:intron | 25.0% |
| !!! | CTCTATTATGGTTTTTTAAG+GGG | - | chr8.2:60548346-60548365 | MS.gene61078:intron | 25.0% |
| !!! | GTCTCTATTATGGTTTTTTA+AGG | - | chr8.2:60548344-60548363 | MS.gene61078:intron | 25.0% |
| !!! | TTTTTATGGTCAACTTGTTA+GGG | - | chr8.2:60548782-60548801 | MS.gene61078:intron | 25.0% |
| AAAATACCAGAAATAGGAGT+TGG | - | chr8.2:60551794-60551813 | MS.gene61078:intron | 30.0% | |
| AAAGTCAATGTATAAGGTGA+AGG | - | chr8.2:60548377-60548396 | MS.gene61078:intron | 30.0% | |
| AAGAGAATATCATGTGCATT+AGG | - | chr8.2:60550240-60550259 | MS.gene61078:intron | 30.0% | |
| AATGATGTCAGAAAATGACA+TGG | - | chr8.2:60548543-60548562 | MS.gene61078:intron | 30.0% | |
| AATTAGGTTCGACTATATCA+AGG | + | chr8.2:60550733-60550752 | None:intergenic | 30.0% | |
| ACAATATTCCACCCTATTAT+AGG | + | chr8.2:60551371-60551390 | None:intergenic | 30.0% | |
| AGAATGAAACTATTACATGC+TGG | + | chr8.2:60549354-60549373 | None:intergenic | 30.0% | |
| AGACATTCCTAACAACAAAA+AGG | + | chr8.2:60551658-60551677 | None:intergenic | 30.0% | |
| ATCTTCAAAACAGAACTTGA+AGG | + | chr8.2:60549746-60549765 | None:intergenic | 30.0% | |
| ATGAATTGGACCCTATAATA+GGG | - | chr8.2:60551357-60551376 | MS.gene61078:intron | 30.0% | |
| ATTAAAACAATGGATGAGTC+TGG | - | chr8.2:60549041-60549060 | MS.gene61078:intron | 30.0% | |
| CAATATTCCACCCTATTATA+GGG | + | chr8.2:60551370-60551389 | None:intergenic | 30.0% | |
| CTAATCCTAAGTCATCTTTA+TGG | + | chr8.2:60550372-60550391 | None:intergenic | 30.0% | |
| CTTATGATTAATTCACCTAG+TGG | - | chr8.2:60549846-60549865 | MS.gene61078:intron | 30.0% | |
| GAAATCACTCTAACTACAAA+TGG | - | chr8.2:60549610-60549629 | MS.gene61078:intron | 30.0% | |
| GAATGAAACTATTACATGCT+GGG | + | chr8.2:60549353-60549372 | None:intergenic | 30.0% | |
| GTGTTTGAGAAATTACGATT+TGG | - | chr8.2:60548240-60548259 | MS.gene61078:CDS | 30.0% | |
| GTTGATGTATGTCTCTATTA+TGG | - | chr8.2:60548334-60548353 | MS.gene61078:intron | 30.0% | |
| TAAAATACCTTCATGCTAGT+TGG | - | chr8.2:60550466-60550485 | MS.gene61078:intron | 30.0% | |
| TAGATTGTATCTGTTGTGAT+AGG | - | chr8.2:60549005-60549024 | MS.gene61078:intron | 30.0% | |
| TATAGTCCTGGAAATATCAA+TGG | - | chr8.2:60549297-60549316 | MS.gene61078:intron | 30.0% | |
| TATTCTTTGTTGCTGTAAGT+TGG | - | chr8.2:60551261-60551280 | MS.gene61078:intron | 30.0% | |
| TCTTCAAAACAGAACTTGAA+GGG | + | chr8.2:60549745-60549764 | None:intergenic | 30.0% | |
| TGATTATATGCTATGAAGCA+CGG | - | chr8.2:60548474-60548493 | MS.gene61078:intron | 30.0% | |
| TGTTTCCATAAAGATGACTT+AGG | - | chr8.2:60550364-60550383 | MS.gene61078:intron | 30.0% | |
| TTATGCATTATGACAACGTT+TGG | - | chr8.2:60549203-60549222 | MS.gene61078:intron | 30.0% | |
| TTGTGTTGTAATGATAGCTA+CGG | + | chr8.2:60550099-60550118 | None:intergenic | 30.0% | |
| ! | AACTGCTTTGTAATTTTGGA+CGG | - | chr8.2:60550117-60550136 | MS.gene61078:CDS | 30.0% |
| ! | ACACAACTGCTTTGTAATTT+TGG | - | chr8.2:60550113-60550132 | MS.gene61078:CDS | 30.0% |
| ! | ATGTAATGACTTGTGATGTT+AGG | - | chr8.2:60548570-60548589 | MS.gene61078:intron | 30.0% |
| ! | CATGCATATTTGATGATTGA+TGG | - | chr8.2:60548938-60548957 | MS.gene61078:intron | 30.0% |
| ! | GAAGTTTTCTTAACTTTGCA+TGG | - | chr8.2:60551294-60551313 | MS.gene61078:intron | 30.0% |
| ! | TCACAGCTTTTATACCTAAA+GGG | + | chr8.2:60549792-60549811 | None:intergenic | 30.0% |
| ! | TTCACAGCTTTTATACCTAA+AGG | + | chr8.2:60549793-60549812 | None:intergenic | 30.0% |
| !! | AATGTTTGCTTTGTTTGTCA+AGG | - | chr8.2:60551747-60551766 | MS.gene61078:intron | 30.0% |
| !! | CTTTCAAGTTACAACAGTAA+AGG | + | chr8.2:60551514-60551533 | None:intergenic | 30.0% |
| !!! | AATTGGTTTTACTATCCCTA+TGG | - | chr8.2:60550141-60550160 | MS.gene61078:CDS | 30.0% |
| !!! | CTGTTTTGAAGATGTCAATT+GGG | - | chr8.2:60549753-60549772 | MS.gene61078:intron | 30.0% |
| !!! | GGAAACATGTCATTTTCTTA+CGG | - | chr8.2:60548196-60548215 | MS.gene61078:CDS | 30.0% |
| !!! | GGTCTTGCTTTTTATGTTTT+AGG | - | chr8.2:60548679-60548698 | MS.gene61078:intron | 30.0% |
| !!! | GGTTTGCGTTGTTTTTTTAA+TGG | - | chr8.2:60550942-60550961 | MS.gene61078:intron | 30.0% |
| !!! | TATCGATCTTGTCATTTTGA+TGG | - | chr8.2:60551608-60551627 | MS.gene61078:intron | 30.0% |
| !!! | TCTGTTTTGAAGATGTCAAT+TGG | - | chr8.2:60549752-60549771 | MS.gene61078:intron | 30.0% |
| !!! | TGCGTTGTTTTTCCATTAAA+GGG | - | chr8.2:60550996-60551015 | MS.gene61078:intron | 30.0% |
| !!! | TTACGATTTGGTTTTGTTGA+TGG | - | chr8.2:60548252-60548271 | MS.gene61078:CDS | 30.0% |
| !!! | TTGCGTTGTTTTTCCATTAA+AGG | - | chr8.2:60550995-60551014 | MS.gene61078:intron | 30.0% |
| !!! | TTTTATGGTCAACTTGTTAG+GGG | - | chr8.2:60548783-60548802 | MS.gene61078:intron | 30.0% |
| !!! | TTTTGTTGATGGTGATGTTT+TGG | - | chr8.2:60548263-60548282 | MS.gene61078:CDS | 30.0% |
| !!! | TTTTGTTGTTAGGAATGTCT+TGG | - | chr8.2:60551658-60551677 | MS.gene61078:intron | 30.0% |
| !!! | TTTTTTTAATGGACCCTAAG+TGG | - | chr8.2:60550953-60550972 | MS.gene61078:intron | 30.0% |
| AACAAAAAGGTTTCAGCCAT+CGG | + | chr8.2:60551645-60551664 | None:intergenic | 35.0% | |
| AACAAGCTCAAGCTTGAATT+AGG | + | chr8.2:60550749-60550768 | None:intergenic | 35.0% | |
| AACCACAACAATACTCAAAC+AGG | + | chr8.2:60549923-60549942 | None:intergenic | 35.0% | |
| AACTTAATCTGGTTGAGATC+AGG | - | chr8.2:60550921-60550940 | MS.gene61078:intron | 35.0% | |
| AAGCACTTCAACAATCTTCT+CGG | + | chr8.2:60549829-60549848 | None:intergenic | 35.0% | |
| AAGTTCAGTTGAATCGAATG+TGG | - | chr8.2:60549227-60549246 | MS.gene61078:intron | 35.0% | |
| AGAAAATGACAACTCCACTT+AGG | + | chr8.2:60550970-60550989 | None:intergenic | 35.0% | |
| AGGACTCTTGAAAACTAGTT+AGG | - | chr8.2:60550515-60550534 | MS.gene61078:intron | 35.0% | |
| ATACCCAGTGTATAAAGTGT+GGG | - | chr8.2:60550844-60550863 | MS.gene61078:intron | 35.0% | |
| ATGAGCATTTCCTAAATTGG+TGG | + | chr8.2:60550819-60550838 | None:intergenic | 35.0% | |
| ATGTGGACGATAAAGGATTA+TGG | - | chr8.2:60550301-60550320 | MS.gene61078:intron | 35.0% | |
| CAAGATAAGTCAAAAACCAG+AGG | + | chr8.2:60549427-60549446 | None:intergenic | 35.0% | |
| CTAGTTAGGTAAATGGTAGA+TGG | - | chr8.2:60550529-60550548 | MS.gene61078:intron | 35.0% | |
| CTGAAAAGAACAGACTATGT+TGG | + | chr8.2:60549999-60550018 | None:intergenic | 35.0% | |
| CTGAGCAAAATACCAGAAAT+AGG | - | chr8.2:60551788-60551807 | MS.gene61078:intron | 35.0% | |
| CTTATGCCATTGATATTTCC+AGG | + | chr8.2:60549306-60549325 | None:intergenic | 35.0% | |
| GAAAATGACAACTCCACTTA+GGG | + | chr8.2:60550969-60550988 | None:intergenic | 35.0% | |
| GAGATGAGCATTTCCTAAAT+TGG | + | chr8.2:60550822-60550841 | None:intergenic | 35.0% | |
| GATAGTCACAAACTGAACAT+AGG | - | chr8.2:60550495-60550514 | MS.gene61078:intron | 35.0% | |
| GATGAAACTTGTGTTGCATA+TGG | - | chr8.2:60548743-60548762 | MS.gene61078:intron | 35.0% | |
| GATGAATTGGACCCTATAAT+AGG | - | chr8.2:60551356-60551375 | MS.gene61078:intron | 35.0% | |
| GTCTTGGATACTATGAGTTT+AGG | - | chr8.2:60551674-60551693 | MS.gene61078:intron | 35.0% | |
| GTTACTGATACATATAGTCC+TGG | - | chr8.2:60549285-60549304 | MS.gene61078:intron | 35.0% | |
| TATACCCAGTGTATAAAGTG+TGG | - | chr8.2:60550843-60550862 | MS.gene61078:intron | 35.0% | |
| TTTCTTGGAATTGACTGATG+TGG | - | chr8.2:60550284-60550303 | MS.gene61078:intron | 35.0% | |
| ! | AACCTGTTTGAGTATTGTTG+TGG | - | chr8.2:60549918-60549937 | MS.gene61078:intron | 35.0% |
| ! | AAGCTTGAGCTTGTTTGTTT+AGG | - | chr8.2:60550754-60550773 | MS.gene61078:intron | 35.0% |
| ! | ACACCTTTGATTAGAAGTGT+CGG | - | chr8.2:60548608-60548627 | MS.gene61078:intron | 35.0% |
| ! | ACTGCTTTGTAATTTTGGAC+GGG | - | chr8.2:60550118-60550137 | MS.gene61078:CDS | 35.0% |
| ! | CTCACATCTGAAATAAATGC+TGG | + | chr8.2:60551415-60551434 | None:intergenic | 35.0% |
| ! | GTTGTGGTTGATACTAGTTT+AGG | - | chr8.2:60549934-60549953 | MS.gene61078:intron | 35.0% |
| ! | TTGTAATTTTGGACGGGAAT+TGG | - | chr8.2:60550124-60550143 | MS.gene61078:CDS | 35.0% |
| ! | TTTTCCATTAAAGGGAGGTT+GGG | - | chr8.2:60551004-60551023 | MS.gene61078:intron | 35.0% |
| ! | TTTTTCCATTAAAGGGAGGT+TGG | - | chr8.2:60551003-60551022 | MS.gene61078:intron | 35.0% |
| !! | AAGGGTATCATATCCAAAAC+AGG | + | chr8.2:60549727-60549746 | None:intergenic | 35.0% |
| !! | ACTTTAGAACTTCTGCAATG+TGG | - | chr8.2:60551122-60551141 | MS.gene61078:intron | 35.0% |
| !! | GACTAATTAATGAAGCACTG+AGG | - | chr8.2:60548869-60548888 | MS.gene61078:intron | 35.0% |
| !!! | CTATTTCTGGTATTTTGCTC+AGG | + | chr8.2:60551790-60551809 | None:intergenic | 35.0% |
| !!! | GCTGAAACCTTTTTGTTGTT+AGG | - | chr8.2:60551648-60551667 | MS.gene61078:intron | 35.0% |
| !!! | GTTGTTTTTCCATTAAAGGG+AGG | - | chr8.2:60550999-60551018 | MS.gene61078:intron | 35.0% |
| !!! | TAGGGGCATTTTCACAAAAT+AGG | - | chr8.2:60548800-60548819 | MS.gene61078:intron | 35.0% |
| !!! | TGGTTTTTGACTTATCTTGC+TGG | - | chr8.2:60549428-60549447 | MS.gene61078:intron | 35.0% |
| !!! | TGTGTGTTTGTTTTTGGTTG+TGG | - | chr8.2:60548294-60548313 | MS.gene61078:intron | 35.0% |
| !!! | TTGTTTTTGGTTGTGGAAGA+TGG | - | chr8.2:60548301-60548320 | MS.gene61078:intron | 35.0% |
| AACAATGGATGAGTCTGGAT+TGG | - | chr8.2:60549046-60549065 | MS.gene61078:intron | 40.0% | |
| AAGATGAGTTCAGTCCAGAA+GGG | - | chr8.2:60551710-60551729 | MS.gene61078:intron | 40.0% | |
| AATTGGACCCTATAATAGGG+TGG | - | chr8.2:60551360-60551379 | MS.gene61078:intron | 40.0% | |
| AGAGAAGCTATAGAAGAAGC+AGG | - | chr8.2:60551059-60551078 | MS.gene61078:intron | 40.0% | |
| ATGGCATGAGGAAAAGTTTG+TGG | - | chr8.2:60551888-60551907 | MS.gene61078:CDS | 40.0% | |
| CATGAGGAAAAGTTTGTGGA+TGG | - | chr8.2:60551892-60551911 | MS.gene61078:CDS | 40.0% | |
| CCATAGGAAATGAGTCCATA+GGG | + | chr8.2:60550159-60550178 | None:intergenic | 40.0% | |
| CCTATGGACTCATTTCCTAT+GGG | - | chr8.2:60550157-60550176 | MS.gene61078:CDS | 40.0% | |
| CTATCAACCAACTAGCATGA+AGG | + | chr8.2:60550476-60550495 | None:intergenic | 40.0% | |
| GAACCGACACTTCTAATCAA+AGG | + | chr8.2:60548614-60548633 | None:intergenic | 40.0% | |
| GAATGATGAAACTGTTGAGG+AGG | - | chr8.2:60551028-60551047 | MS.gene61078:intron | 40.0% | |
| GGAGAATGATGAAACTGTTG+AGG | - | chr8.2:60551025-60551044 | MS.gene61078:intron | 40.0% | |
| GTCAATGTATAAGGTGAAGG+TGG | - | chr8.2:60548380-60548399 | MS.gene61078:intron | 40.0% | |
| TACCCAGTGTATAAAGTGTG+GGG | - | chr8.2:60550845-60550864 | MS.gene61078:intron | 40.0% | |
| TCAAGGAGGAACTTGAACTA+TGG | - | chr8.2:60551764-60551783 | MS.gene61078:intron | 40.0% | |
| TGATGTTAGGAGTCAGATAC+TGG | - | chr8.2:60548583-60548602 | MS.gene61078:intron | 40.0% | |
| TGGACTGAACTCATCTTGAT+GGG | + | chr8.2:60551707-60551726 | None:intergenic | 40.0% | |
| TTGACTGATGTGGACGATAA+AGG | - | chr8.2:60550294-60550313 | MS.gene61078:intron | 40.0% | |
| ! | ACCTTTGGAAACAAAAGACC+TGG | + | chr8.2:60549873-60549892 | None:intergenic | 40.0% |
| ! | ATGGTTATCGTCTTGTTGCT+GGG | - | chr8.2:60548096-60548115 | MS.gene61078:CDS | 40.0% |
| ! | ATTAATTCACCTAGTGGACC+AGG | - | chr8.2:60549852-60549871 | MS.gene61078:intron | 40.0% |
| ! | TATCAAGGCTCAAGCTTTAG+AGG | + | chr8.2:60550718-60550737 | None:intergenic | 40.0% |
| ! | TTTCTAAGAACACGCTACTC+TGG | - | chr8.2:60549156-60549175 | MS.gene61078:intron | 40.0% |
| ! | TTTGGAGCAATTCATCCCAT+AGG | + | chr8.2:60550175-60550194 | None:intergenic | 40.0% |
| !! | ACCAGGTCTTTTGTTTCCAA+AGG | - | chr8.2:60549869-60549888 | MS.gene61078:intron | 40.0% |
| !! | GTTTGCTTTGTTTGTCAAGG+AGG | - | chr8.2:60551750-60551769 | MS.gene61078:intron | 40.0% |
| !! | GTTTTGAGCTCCACCAATTT+AGG | - | chr8.2:60550806-60550825 | MS.gene61078:intron | 40.0% |
| AACAAAAGACCTGGTCCACT+AGG | + | chr8.2:60549864-60549883 | None:intergenic | 45.0% | |
| ACCCAGTGTATAAAGTGTGG+GGG | - | chr8.2:60550846-60550865 | MS.gene61078:intron | 45.0% | |
| ATAGAAGAAGCAGGAGTTCG+AGG | - | chr8.2:60551068-60551087 | MS.gene61078:intron | 45.0% | |
| ATCCAGCCAACTCCTATTTC+TGG | + | chr8.2:60551803-60551822 | None:intergenic | 45.0% | |
| ATGAAGCACGGACACATACA+CGG | - | chr8.2:60548486-60548505 | MS.gene61078:intron | 45.0% | |
| CAAGATGAGTTCAGTCCAGA+AGG | - | chr8.2:60551709-60551728 | MS.gene61078:intron | 45.0% | |
| CACATACACGGACACAAACA+CGG | - | chr8.2:60548498-60548517 | MS.gene61078:intron | 45.0% | |
| CATCAGCAACGCTATGAAGA+TGG | - | chr8.2:60548077-60548096 | MS.gene61078:CDS | 45.0% | |
| CCCATAGGAAATGAGTCCAT+AGG | + | chr8.2:60550160-60550179 | None:intergenic | 45.0% | |
| CCCTATGGACTCATTTCCTA+TGG | - | chr8.2:60550156-60550175 | MS.gene61078:CDS | 45.0% | |
| CTGGACTGAACTCATCTTGA+TGG | + | chr8.2:60551708-60551727 | None:intergenic | 45.0% | |
| GATGGATCCTTTCTAACCGA+TGG | - | chr8.2:60551626-60551645 | MS.gene61078:intron | 45.0% | |
| TAATGGGAACCTACGTTCTG+TGG | - | chr8.2:60551205-60551224 | MS.gene61078:intron | 45.0% | |
| TACCAGAAATAGGAGTTGGC+TGG | - | chr8.2:60551798-60551817 | MS.gene61078:intron | 45.0% | |
| TAGGAGTTGGCTGGATGTAT+CGG | - | chr8.2:60551807-60551826 | MS.gene61078:intron | 45.0% | |
| TCAAATGCACCACAGAACGT+AGG | + | chr8.2:60551217-60551236 | None:intergenic | 45.0% | |
| TGATGAAACTGTTGAGGAGG+CGG | - | chr8.2:60551031-60551050 | MS.gene61078:intron | 45.0% | |
| TTCTCCCAACCTCCCTTTAA+TGG | + | chr8.2:60551011-60551030 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr8.2:60550588-60550607 | MS.gene61078:intron | 45.0% |
| ! | ATGGGTGTGAAAGCACAAGA+AGG | - | chr8.2:60551313-60551332 | MS.gene61078:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr8.2:60550587-60550606 | MS.gene61078:intron | 45.0% |
| ! | GAAGATGTCAATTGGGTTGC+AGG | - | chr8.2:60549760-60549779 | MS.gene61078:intron | 45.0% |
| ! | GATGGTTATCGTCTTGTTGC+TGG | - | chr8.2:60548095-60548114 | MS.gene61078:CDS | 45.0% |
| ! | GTTTCAGCCATCGGTTAGAA+AGG | + | chr8.2:60551636-60551655 | None:intergenic | 45.0% |
| !! | GTCTGATTTGGTTGCTCGTA+CGG | - | chr8.2:60548049-60548068 | MS.gene61078:CDS | 45.0% |
| !! | TCTGATTTGGTTGCTCGTAC+GGG | - | chr8.2:60548050-60548069 | MS.gene61078:CDS | 45.0% |
| !! | AAATAAAAATAAAAAAGAAA+AGG | + | chr8.2:60548137-60548156 | None:intergenic | 5.0% |
| !! | AATAAAAATAAAAAAGAAAA+GGG | + | chr8.2:60548136-60548155 | None:intergenic | 5.0% |
| ACGCTTCTGCAAATGGCATG+AGG | - | chr8.2:60551876-60551895 | MS.gene61078:CDS | 50.0% | |
| AGCCCCCACACTTTATACAC+TGG | + | chr8.2:60550851-60550870 | None:intergenic | 50.0% | |
| AGGAGTTCGAGGAGACCTAA+TGG | - | chr8.2:60551079-60551098 | MS.gene61078:intron | 50.0% | |
| ATTTGGTTGCTCGTACGGGT+CGG | - | chr8.2:60548054-60548073 | MS.gene61078:CDS | 50.0% | |
| CAACCCCACTTAGTGGGATA+AGG | + | chr8.2:60550594-60550613 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr8.2:60550589-60550608 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | - | chr8.2:60550592-60550611 | MS.gene61078:intron | 50.0% | |
| GCAGCTTTACACAACCCTTC+TGG | + | chr8.2:60551727-60551746 | None:intergenic | 50.0% | |
| GCCCCCACACTTTATACACT+GGG | + | chr8.2:60550850-60550869 | None:intergenic | 50.0% | |
| GTTGCAGGTGTGTTCCCTTT+AGG | - | chr8.2:60549775-60549794 | MS.gene61078:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr8.2:60550586-60550605 | MS.gene61078:intron | 50.0% |
| ! | TTGATAGCCTCCGACATGAG+TGG | - | chr8.2:60551836-60551855 | MS.gene61078:intron | 50.0% |
| !! | CTCTGGAACGCTTCTGCAAA+TGG | - | chr8.2:60551869-60551888 | MS.gene61078:CDS | 50.0% |
| ATGCAGCCAACCCCACTTAG+TGG | + | chr8.2:60550601-60550620 | None:intergenic | 55.0% | |
| CCTCCGACATGAGTGGATGA+GGG | - | chr8.2:60551843-60551862 | MS.gene61078:intron | 55.0% | |
| CGTCCCTCATCCACTCATGT+CGG | + | chr8.2:60551849-60551868 | None:intergenic | 55.0% | |
| GAGTTGGCTGGATGTATCGG+AGG | - | chr8.2:60551810-60551829 | MS.gene61078:intron | 55.0% | |
| TGCAGCCAACCCCACTTAGT+GGG | + | chr8.2:60550600-60550619 | None:intergenic | 55.0% | |
| !! | ACTAAGTGGGGTTGGCTGCA+TGG | - | chr8.2:60550600-60550619 | MS.gene61078:intron | 55.0% |
| CCCTCATCCACTCATGTCGG+AGG | + | chr8.2:60551846-60551865 | None:intergenic | 60.0% | |
| GCCTCCGACATGAGTGGATG+AGG | - | chr8.2:60551842-60551861 | MS.gene61078:intron | 60.0% | |
| TGAGTGGATGAGGGACGCTC+TGG | - | chr8.2:60551852-60551871 | MS.gene61078:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 60548047 | 60551924 | 60548047 | ID=MS.gene61078 |
| chr8.2 | mRNA | 60548047 | 60551924 | 60548047 | ID=MS.gene61078.t1;Parent=MS.gene61078 |
| chr8.2 | exon | 60551854 | 60551924 | 60551854 | ID=MS.gene61078.t1.exon1;Parent=MS.gene61078.t1 |
| chr8.2 | CDS | 60551854 | 60551924 | 60551854 | ID=cds.MS.gene61078.t1;Parent=MS.gene61078.t1 |
| chr8.2 | exon | 60550081 | 60550189 | 60550081 | ID=MS.gene61078.t1.exon2;Parent=MS.gene61078.t1 |
| chr8.2 | CDS | 60550081 | 60550189 | 60550081 | ID=cds.MS.gene61078.t1;Parent=MS.gene61078.t1 |
| chr8.2 | exon | 60548871 | 60548954 | 60548871 | ID=MS.gene61078.t1.exon3;Parent=MS.gene61078.t1 |
| chr8.2 | CDS | 60548871 | 60548954 | 60548871 | ID=cds.MS.gene61078.t1;Parent=MS.gene61078.t1 |
| chr8.2 | exon | 60548047 | 60548301 | 60548047 | ID=MS.gene61078.t1.exon4;Parent=MS.gene61078.t1 |
| chr8.2 | CDS | 60548047 | 60548301 | 60548047 | ID=cds.MS.gene61078.t1;Parent=MS.gene61078.t1 |
| Gene Sequence |
| Protein sequence |
