Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61099.t1 | XP_013456085.1 | 95.7 | 483 | 21 | 0 | 1 | 483 | 1 | 483 | 7.40E-266 | 926 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61099.t1 | Q10137 | 27.0 | 267 | 171 | 7 | 155 | 400 | 2 | 265 | 1.1e-10 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61099.t1 | A0A072UL27 | 95.7 | 483 | 21 | 0 | 1 | 483 | 1 | 483 | 5.3e-266 | 926.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059634 | MS.gene61099 | 0.810112 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61099.t1 | MTR_4g063605 | 95.652 | 483 | 21 | 0 | 1 | 483 | 1 | 483 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61099.t1 | AT3G46450 | 50.000 | 486 | 234 | 4 | 1 | 482 | 1 | 481 | 9.11e-162 | 468 |
| MS.gene61099.t1 | AT3G46450 | 50.000 | 486 | 234 | 4 | 1 | 482 | 1 | 481 | 9.11e-162 | 468 |
| MS.gene61099.t1 | AT3G46450 | 49.190 | 494 | 234 | 5 | 1 | 482 | 1 | 489 | 1.27e-158 | 460 |
Find 119 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAAGTATTATCGTATTT+TGG | 0.089032 | 4.4:+42477952 | MS.gene61099:CDS |
| CACAAAACCAAATACCTTTC+TGG | 0.191441 | 4.4:-42475981 | None:intergenic |
| TTGCCTACCCACCATTTAAA+TGG | 0.217975 | 4.4:+42473159 | MS.gene61099:CDS |
| ATGTGTGAATTGTTCTAAAA+TGG | 0.228006 | 4.4:+42477761 | MS.gene61099:CDS |
| TTCAAAAGTGGGCTGTGTTC+AGG | 0.251395 | 4.4:+42473183 | MS.gene61099:CDS |
| TCAGTATCACAGGTAGAATA+TGG | 0.282203 | 4.4:+42477152 | MS.gene61099:intron |
| TTGTGTCTGGCAAGGTCTGC+AGG | 0.284744 | 4.4:+42473124 | MS.gene61099:CDS |
| CCAGCAGCAGCAGAATTGTT+AGG | 0.345640 | 4.4:+42477820 | MS.gene61099:CDS |
| ATATCTTTGTGCAAAGCCTT+TGG | 0.349948 | 4.4:-42472976 | None:intergenic |
| AGAGTGCAACCTCATGAAAC+TGG | 0.353698 | 4.4:+42477795 | MS.gene61099:CDS |
| AGATAAAATATCTCTAGTTT+TGG | 0.358304 | 4.4:+42478126 | MS.gene61099:CDS |
| GTGGGCTGTGTTCAGGGGTT+TGG | 0.370104 | 4.4:+42473190 | MS.gene61099:CDS |
| GCAATGGAAAGAACTAATAA+TGG | 0.372345 | 4.4:-42473811 | None:intergenic |
| GAGCAAATCGAGGTTTATCT+TGG | 0.375243 | 4.4:-42476972 | None:intergenic |
| TATCTTTGTGCAAAGCCTTT+GGG | 0.386982 | 4.4:-42472975 | None:intergenic |
| ACTACGTCTACATCCAACTA+TGG | 0.397066 | 4.4:+42477878 | MS.gene61099:CDS |
| CCCTGTCTCATTGTAAGGCT+TGG | 0.403991 | 4.4:+42476925 | MS.gene61099:CDS |
| TGTGGTCAAATATGGTGTTC+TGG | 0.416093 | 4.4:+42476878 | MS.gene61099:CDS |
| AGATTACCTGAAGAAAAGTC+TGG | 0.416322 | 4.4:-42477361 | None:intergenic |
| AGAGTAGATGCCCTTGTGTC+TGG | 0.419220 | 4.4:+42473111 | MS.gene61099:CDS |
| ACAGACCCTGTCTCATTGTA+AGG | 0.420449 | 4.4:+42476920 | MS.gene61099:CDS |
| ATCTTGCAGAATGGAAGAAC+AGG | 0.423646 | 4.4:-42477273 | None:intergenic |
| GGTCATAGTTGTTGCTTTGA+CGG | 0.427086 | 4.4:-42477911 | None:intergenic |
| GTTGTCATAGCTCTTGGTGC+TGG | 0.427292 | 4.4:+42477975 | MS.gene61099:CDS |
| TGCTGAACCGGCTCCTGTGC+AGG | 0.432616 | 4.4:+42473912 | MS.gene61099:CDS |
| AAACAAAACGGTGCTATCAC+TGG | 0.436538 | 4.4:+42472915 | MS.gene61099:CDS |
| TTCAGAAATATCTGCTGAAC+CGG | 0.436907 | 4.4:+42473900 | MS.gene61099:CDS |
| TCAACACTGCCATCATATCT+TGG | 0.436939 | 4.4:+42477726 | MS.gene61099:CDS |
| GCAATAACACGAGCAATTGC+TGG | 0.437422 | 4.4:-42477338 | None:intergenic |
| GCTGGAAATGTGGTCAAATA+TGG | 0.437920 | 4.4:+42476870 | MS.gene61099:CDS |
| TCAAAAGTGGGCTGTGTTCA+GGG | 0.438998 | 4.4:+42473184 | MS.gene61099:CDS |
| CCTAACAATTCTGCTGCTGC+TGG | 0.448203 | 4.4:-42477820 | None:intergenic |
| AACAAACAACCAAGACGATT+AGG | 0.448537 | 4.4:-42477302 | None:intergenic |
| CCTGTCTCATTGTAAGGCTT+GGG | 0.451557 | 4.4:+42476926 | MS.gene61099:CDS |
| CCCTCAAATTACAGTATTGG+TGG | 0.455195 | 4.4:+42477202 | MS.gene61099:CDS |
| CAGTATCACAGGTAGAATAT+GGG | 0.455947 | 4.4:+42477153 | MS.gene61099:intron |
| AAGGGATTAGTTTGCCAGAA+AGG | 0.456937 | 4.4:+42475967 | MS.gene61099:CDS |
| GACTTTGGAAGCAGTGCTGT+GGG | 0.461131 | 4.4:+42473029 | MS.gene61099:CDS |
| TAAAACTTCAGGAGCTCTCT+CGG | 0.463316 | 4.4:-42475898 | None:intergenic |
| TGCAGGATAATTTGAATACT+AGG | 0.474906 | 4.4:+42473929 | MS.gene61099:CDS |
| CCCAAGCCTTACAATGAGAC+AGG | 0.475196 | 4.4:-42476926 | None:intergenic |
| CATTTAAATGGATTCAAAAG+TGG | 0.478870 | 4.4:+42473171 | MS.gene61099:CDS |
| AAATTATCCTGCACAGGAGC+CGG | 0.479392 | 4.4:-42473919 | None:intergenic |
| CCACCAATACTGTAATTTGA+GGG | 0.482481 | 4.4:-42477202 | None:intergenic |
| CGGTCATCTAATACCATAGT+TGG | 0.485418 | 4.4:-42477891 | None:intergenic |
| TTGCTGCTTTAGAAGCTGTA+AGG | 0.485821 | 4.4:+42473078 | MS.gene61099:CDS |
| TCCACCAATACTGTAATTTG+AGG | 0.487804 | 4.4:-42477203 | None:intergenic |
| AAACCCTCAAATTACAGTAT+TGG | 0.490708 | 4.4:+42477199 | MS.gene61099:CDS |
| AACGAAGAGCTGGAAAATCA+AGG | 0.492588 | 4.4:+42475948 | MS.gene61099:CDS |
| GCGTATTGTCTTCTTGATTG+AGG | 0.494104 | 4.4:-42476812 | None:intergenic |
| GATCACTTTCCTAATCGTCT+TGG | 0.495856 | 4.4:+42477293 | MS.gene61099:CDS |
| TGTGTGAATTGTTCTAAAAT+GGG | 0.496722 | 4.4:+42477762 | MS.gene61099:CDS |
| CAGCAGCAGCAGAATTGTTA+GGG | 0.497606 | 4.4:+42477821 | MS.gene61099:CDS |
| TGTGTCTGGCAAGGTCTGCA+GGG | 0.502343 | 4.4:+42473125 | MS.gene61099:CDS |
| ATTTGCATGGGAATTCTCAA+TGG | 0.503124 | 4.4:-42477242 | None:intergenic |
| AATTCTTACAGTAGAAGAGC+TGG | 0.508630 | 4.4:+42476852 | MS.gene61099:CDS |
| GACTCAACTCAACGAAGAGC+TGG | 0.511333 | 4.4:+42475938 | MS.gene61099:CDS |
| ATTTAAATGGATTCAAAAGT+GGG | 0.513377 | 4.4:+42473172 | MS.gene61099:CDS |
| GATCTTTGCTTCAGTATCAC+AGG | 0.515027 | 4.4:+42477142 | MS.gene61099:intron |
| AGCAAATCGAGGTTTATCTT+GGG | 0.515766 | 4.4:-42476971 | None:intergenic |
| AAAACTTCAGGAGCTCTCTC+GGG | 0.516604 | 4.4:-42475897 | None:intergenic |
| CAAGAAGACAATACGCTGGC+GGG | 0.519577 | 4.4:+42476819 | MS.gene61099:CDS |
| TGCAGACCTTGCCAGACACA+AGG | 0.523801 | 4.4:-42473122 | None:intergenic |
| CACCATGCGTCAATGAAACA+AGG | 0.525789 | 4.4:-42473007 | None:intergenic |
| AGATAAACCTCGATTTGCTC+AGG | 0.528310 | 4.4:+42476975 | MS.gene61099:CDS |
| ATTTAAATGGTGGGTAGGCA+AGG | 0.528331 | 4.4:-42473157 | None:intergenic |
| AACAGCCTTTACTGATGCAC+TGG | 0.530440 | 4.4:+42473834 | MS.gene61099:CDS |
| TTGTCTTCTTGATTGAGGTA+AGG | 0.532061 | 4.4:-42476807 | None:intergenic |
| AATCCATTTAAATGGTGGGT+AGG | 0.532716 | 4.4:-42473162 | None:intergenic |
| TTTGAATCCATTTAAATGGT+GGG | 0.533081 | 4.4:-42473166 | None:intergenic |
| TCAAATATGGTGTTCTGGCA+TGG | 0.535129 | 4.4:+42476883 | MS.gene61099:CDS |
| ACATTCCAGTGCATCAGTAA+AGG | 0.536622 | 4.4:-42473839 | None:intergenic |
| TCATTGACGCATGGTGACTT+TGG | 0.537854 | 4.4:+42473014 | MS.gene61099:CDS |
| GTATTCAAATTATCCTGCAC+AGG | 0.542724 | 4.4:-42473925 | None:intergenic |
| CTTCGGTTTATATGGGAGAG+AGG | 0.544472 | 4.4:+42472856 | None:intergenic |
| ACAGGATCTCAGTATTTGCA+TGG | 0.546008 | 4.4:-42477255 | None:intergenic |
| GGGTTTGGTTAAAAGCATGC+AGG | 0.548426 | 4.4:+42473205 | MS.gene61099:CDS |
| CTGCTGGTCCCAGTTTCATG+AGG | 0.549096 | 4.4:-42477804 | None:intergenic |
| CAAAAGTGGGCTGTGTTCAG+GGG | 0.551310 | 4.4:+42473185 | MS.gene61099:CDS |
| CTGGTTGCGTCGCGTCCCAA+AGG | 0.563821 | 4.4:+42472960 | MS.gene61099:CDS |
| CAGCTGCCTCCAAGATATGA+TGG | 0.565306 | 4.4:-42477735 | None:intergenic |
| AGATGCCCTTGTGTCTGGCA+AGG | 0.565370 | 4.4:+42473116 | MS.gene61099:CDS |
| TTCGGTTTATATGGGAGAGA+GGG | 0.566140 | 4.4:+42472857 | None:intergenic |
| ATCAGTAAAGGCTGTTGCAA+TGG | 0.567300 | 4.4:-42473827 | None:intergenic |
| TGACTTTGGAAGCAGTGCTG+TGG | 0.568986 | 4.4:+42473028 | MS.gene61099:CDS |
| AACAAAACGGTGCTATCACT+GGG | 0.569332 | 4.4:+42472916 | MS.gene61099:CDS |
| GGTTTATATGGGAGAGAGGG+TGG | 0.571830 | 4.4:+42472860 | None:intergenic |
| ACGAAGAGCTGGAAAATCAA+GGG | 0.572330 | 4.4:+42475949 | MS.gene61099:CDS |
| TGTGAATTAGGAGGTGGCAA+TGG | 0.572346 | 4.4:+42478091 | MS.gene61099:intron |
| AGCGCTAATTCTAAACAAAA+CGG | 0.574001 | 4.4:+42472903 | MS.gene61099:CDS |
| CCCCTTGTTTCATTGACGCA+TGG | 0.577087 | 4.4:+42473005 | MS.gene61099:CDS |
| AGGAAAGTGATCTTGCAGAA+TGG | 0.579301 | 4.4:-42477282 | None:intergenic |
| ACACTGCCATCATATCTTGG+AGG | 0.583075 | 4.4:+42477729 | MS.gene61099:CDS |
| ACAGTATTGGTGGACTGTGA+AGG | 0.583388 | 4.4:+42477212 | MS.gene61099:CDS |
| TGGGATAGCTTGCAGCACAT+TGG | 0.587085 | 4.4:+42476945 | MS.gene61099:CDS |
| GATTACCTGAAGAAAAGTCT+GGG | 0.589318 | 4.4:-42477360 | None:intergenic |
| TAGAAGCTGTGTAAAATCTG+TGG | 0.605768 | 4.4:-42476765 | None:intergenic |
| CAGGATCTCAGTATTTGCAT+GGG | 0.606115 | 4.4:-42477254 | None:intergenic |
| CAGTAGAAGAGCTGGAAATG+TGG | 0.608308 | 4.4:+42476860 | MS.gene61099:CDS |
| AGAATTAGTAATATGATCTG+AGG | 0.616840 | 4.4:-42473872 | None:intergenic |
| TGACAGCGGTTCTCAACACC+TGG | 0.616965 | 4.4:-42477932 | None:intergenic |
| GAGTGCAACCTCATGAAACT+GGG | 0.622128 | 4.4:+42477796 | MS.gene61099:CDS |
| CCAAGCCTTACAATGAGACA+GGG | 0.623318 | 4.4:-42476925 | None:intergenic |
| GTTGGATGTAGACGTAGTGA+TGG | 0.623773 | 4.4:-42477873 | None:intergenic |
| AGTATCACAGGTAGAATATG+GGG | 0.625550 | 4.4:+42477154 | MS.gene61099:intron |
| GGTGCTGGAGTATACGAACC+TGG | 0.628612 | 4.4:+42477990 | MS.gene61099:CDS |
| GCAGACCTTGCCAGACACAA+GGG | 0.633261 | 4.4:-42473121 | None:intergenic |
| CTAATTGCCTGAGCAAATCG+AGG | 0.635399 | 4.4:-42476982 | None:intergenic |
| ACCATGCGTCAATGAAACAA+GGG | 0.635590 | 4.4:-42473006 | None:intergenic |
| CAGCAGCAGAATTGTTAGGG+AGG | 0.639469 | 4.4:+42477824 | MS.gene61099:CDS |
| GATGCACTGGAATGTAGTGA+TGG | 0.651523 | 4.4:+42473847 | MS.gene61099:CDS |
| TCAAGAAGACAATACGCTGG+CGG | 0.653895 | 4.4:+42476818 | MS.gene61099:CDS |
| TCAAAGCAACAACTATGACC+AGG | 0.665242 | 4.4:+42477914 | MS.gene61099:CDS |
| ATTGTTCTAAAATGGGCAAG+CGG | 0.677673 | 4.4:+42477769 | MS.gene61099:CDS |
| TACGATAATACTTATGACAG+CGG | 0.678800 | 4.4:-42477946 | None:intergenic |
| CCATGCGTCAATGAAACAAG+GGG | 0.685581 | 4.4:-42473005 | None:intergenic |
| CAATCAAGAAGACAATACGC+TGG | 0.698783 | 4.4:+42476815 | MS.gene61099:CDS |
| ACTTTGGAAGCAGTGCTGTG+GGG | 0.718142 | 4.4:+42473030 | MS.gene61099:CDS |
| GGATGATATCAGTGACAACG+AGG | 0.724876 | 4.4:+42477845 | MS.gene61099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTGAATATTTTTTTTT+TGG | + | chr4.4:42476559-42476578 | MS.gene61099:intron | 10.0% |
| !!! | TCATTGAATATTTTTTTTTT+GGG | + | chr4.4:42476560-42476579 | MS.gene61099:intron | 10.0% |
| !! | AAAAAAAAGGTAAATATTGT+TGG | - | chr4.4:42476282-42476301 | None:intergenic | 15.0% |
| !! | AAAATTATCATCTTTATGTT+TGG | + | chr4.4:42474258-42474277 | MS.gene61099:intron | 15.0% |
| !! | AACATTAAATAAAATCACTT+AGG | + | chr4.4:42476461-42476480 | MS.gene61099:intron | 15.0% |
| !!! | AAGTTTTAGAATATGAAAAA+TGG | + | chr4.4:42475913-42475932 | MS.gene61099:CDS | 15.0% |
| !!! | AATCATTTTTTAGTTTTTGT+TGG | + | chr4.4:42476091-42476110 | MS.gene61099:intron | 15.0% |
| !!! | ATTTAACAAGTTTTAGAAAT+TGG | + | chr4.4:42473361-42473380 | MS.gene61099:intron | 15.0% |
| !! | AACTAGAACATAAACAAATA+TGG | - | chr4.4:42475585-42475604 | None:intergenic | 20.0% |
| !! | AAGAAAAAGTTAAAGATAGA+AGG | + | chr4.4:42477669-42477688 | MS.gene61099:CDS | 20.0% |
| !! | AATAGCAAATATGTTAAATG+TGG | - | chr4.4:42474186-42474205 | None:intergenic | 20.0% |
| !! | ACCATTAATTAACAAATCAA+AGG | - | chr4.4:42476346-42476365 | None:intergenic | 20.0% |
| !! | ACTAGAACATAAACAAATAT+GGG | - | chr4.4:42475584-42475603 | None:intergenic | 20.0% |
| !! | AGGCATATATCTAATTTATA+TGG | - | chr4.4:42475441-42475460 | None:intergenic | 20.0% |
| !! | ATAGCAAATATGTTAAATGT+GGG | - | chr4.4:42474185-42474204 | None:intergenic | 20.0% |
| !! | ATATTTACTTGCATATTTCT+TGG | + | chr4.4:42476680-42476699 | MS.gene61099:intron | 20.0% |
| !! | ATGTCAATATATATATTCCT+TGG | + | chr4.4:42475155-42475174 | MS.gene61099:intron | 20.0% |
| !! | ATTAAAAAGTAAGTGTAGTT+AGG | + | chr4.4:42474630-42474649 | MS.gene61099:intron | 20.0% |
| !! | CTACAAATTTATTTCAACTA+GGG | - | chr4.4:42478045-42478064 | None:intergenic | 20.0% |
| !! | GGCATATATCTAATTTATAT+GGG | - | chr4.4:42475440-42475459 | None:intergenic | 20.0% |
| !! | TCTACAAATTTATTTCAACT+AGG | - | chr4.4:42478046-42478065 | None:intergenic | 20.0% |
| !! | TCTATTTCAAACTAATCTAT+TGG | + | chr4.4:42476052-42476071 | MS.gene61099:intron | 20.0% |
| !! | TGTCAATATATATATTCCTT+GGG | + | chr4.4:42475156-42475175 | MS.gene61099:intron | 20.0% |
| !! | TTATTTACATATGACATTTG+TGG | + | chr4.4:42475078-42475097 | MS.gene61099:intron | 20.0% |
| !!! | AATGCAATTTTAATTATCCT+AGG | + | chr4.4:42477524-42477543 | MS.gene61099:intron | 20.0% |
| !!! | ACCTTTGATTTGTTAATTAA+TGG | + | chr4.4:42476342-42476361 | MS.gene61099:intron | 20.0% |
| !!! | AGATAAAATATCTCTAGTTT+TGG | + | chr4.4:42478126-42478145 | MS.gene61099:CDS | 20.0% |
| !!! | ATGCAATTTTAATTATCCTA+GGG | + | chr4.4:42477525-42477544 | MS.gene61099:intron | 20.0% |
| !!! | ATTTAAATGGATTCAAAAGT+GGG | + | chr4.4:42473172-42473191 | MS.gene61099:CDS | 20.0% |
| !!! | ATTTTAAGCATTTGAATCAT+AGG | + | chr4.4:42477629-42477648 | MS.gene61099:intron | 20.0% |
| !!! | CATAAGTATTATCGTATTTT+GGG | + | chr4.4:42477953-42477972 | MS.gene61099:CDS | 20.0% |
| !!! | CTATTTTCTTTGTTGTTTTA+GGG | - | chr4.4:42477404-42477423 | None:intergenic | 20.0% |
| !!! | TAATTTGAAACAATTGTTAC+CGG | + | chr4.4:42475265-42475284 | MS.gene61099:intron | 20.0% |
| !!! | TCAAGTTATTATTAACCTTT+TGG | + | chr4.4:42474068-42474087 | MS.gene61099:intron | 20.0% |
| !!! | TCATAAGTATTATCGTATTT+TGG | + | chr4.4:42477952-42477971 | MS.gene61099:CDS | 20.0% |
| !!! | TTTAAAGAAAGCACAAATTT+TGG | - | chr4.4:42477602-42477621 | None:intergenic | 20.0% |
| !!! | TTTAGATTTAGTGTTGAATT+AGG | + | chr4.4:42475502-42475521 | MS.gene61099:intron | 20.0% |
| !!! | TTTTCATATTCTAAAACTTC+AGG | - | chr4.4:42475912-42475931 | None:intergenic | 20.0% |
| ! | AACAAAGAAAATAGCAAAGA+GGG | + | chr4.4:42477410-42477429 | MS.gene61099:intron | 25.0% |
| ! | AACACTAAATCTAAATCAAG+AGG | - | chr4.4:42475497-42475516 | None:intergenic | 25.0% |
| ! | AATACTAGGTATATGATTTG+AGG | + | chr4.4:42473943-42473962 | MS.gene61099:intron | 25.0% |
| ! | ACAAAGAAAATTCAGAAACA+GGG | - | chr4.4:42474318-42474337 | None:intergenic | 25.0% |
| ! | ACAGACGACTAAAAAAAAAA+AGG | - | chr4.4:42476295-42476314 | None:intergenic | 25.0% |
| ! | ACTGAAAAAAACATCTATTG+TGG | + | chr4.4:42475046-42475065 | MS.gene61099:intron | 25.0% |
| ! | AGAATTAGTAATATGATCTG+AGG | - | chr4.4:42473875-42473894 | None:intergenic | 25.0% |
| ! | AGCTAACTTTACCAATTAAA+TGG | - | chr4.4:42474122-42474141 | None:intergenic | 25.0% |
| ! | ATACTAGGTATATGATTTGA+GGG | + | chr4.4:42473944-42473963 | MS.gene61099:intron | 25.0% |
| ! | ATTACACTTAAGTTTCTGTT+TGG | + | chr4.4:42474203-42474222 | MS.gene61099:intron | 25.0% |
| ! | ATTCAAGAGAAATAATAGCT+AGG | + | chr4.4:42474454-42474473 | MS.gene61099:intron | 25.0% |
| ! | ATTCAGTTACATAGCAAAAA+TGG | - | chr4.4:42473318-42473337 | None:intergenic | 25.0% |
| ! | ATTGGTTACTCATTAAACTA+AGG | - | chr4.4:42477122-42477141 | None:intergenic | 25.0% |
| ! | ATTTCTCAAATGTTCTTTCA+TGG | - | chr4.4:42474364-42474383 | None:intergenic | 25.0% |
| ! | CTTAACCTTTACAGAAAAAA+GGG | - | chr4.4:42473648-42473667 | None:intergenic | 25.0% |
| ! | TAAATATTCAGTAGACAGAT+GGG | - | chr4.4:42477066-42477085 | None:intergenic | 25.0% |
| ! | TACAAAGAAAATTCAGAAAC+AGG | - | chr4.4:42474319-42474338 | None:intergenic | 25.0% |
| ! | TATGCTATTGCTATCTAATA+AGG | - | chr4.4:42476663-42476682 | None:intergenic | 25.0% |
| ! | TGAAAATCACTTTATTCAAG+AGG | - | chr4.4:42475823-42475842 | None:intergenic | 25.0% |
| ! | TTAACCTTTACAGAAAAAAG+GGG | - | chr4.4:42473647-42473666 | None:intergenic | 25.0% |
| ! | TTAATTGATGTTCGAATTGT+AGG | - | chr4.4:42474946-42474965 | None:intergenic | 25.0% |
| ! | TTTAGTGATCTTAGAGTTAA+TGG | + | chr4.4:42474235-42474254 | MS.gene61099:intron | 25.0% |
| ! | TTTGAATCCATTTAAATGGT+GGG | - | chr4.4:42473169-42473188 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTTAGAATT+TGG | - | chr4.4:42475534-42475553 | None:intergenic | 25.0% |
| !! | CACTTTTGAATCCATTTAAA+TGG | - | chr4.4:42473173-42473192 | None:intergenic | 25.0% |
| !! | CATTTAAATGGATTCAAAAG+TGG | + | chr4.4:42473171-42473190 | MS.gene61099:CDS | 25.0% |
| !! | TATCATGTTATAGCATTTTC+CGG | - | chr4.4:42476022-42476041 | None:intergenic | 25.0% |
| !! | TTAGATTTTGCACAATTTCA+TGG | - | chr4.4:42474763-42474782 | None:intergenic | 25.0% |
| !! | TTTTGAATCCATTTAAATGG+TGG | - | chr4.4:42473170-42473189 | None:intergenic | 25.0% |
| !!! | ATGTGTGAATTGTTCTAAAA+TGG | + | chr4.4:42477761-42477780 | MS.gene61099:CDS | 25.0% |
| !!! | GCTATTTTCTTTGTTGTTTT+AGG | - | chr4.4:42477405-42477424 | None:intergenic | 25.0% |
| !!! | TGCAATTTTAATTATCCTAG+GGG | + | chr4.4:42477526-42477545 | MS.gene61099:intron | 25.0% |
| !!! | TGTGTGAATTGTTCTAAAAT+GGG | + | chr4.4:42477762-42477781 | MS.gene61099:CDS | 25.0% |
| !!! | TTTAACTTTTTCTTAGTAGC+TGG | - | chr4.4:42477663-42477682 | None:intergenic | 25.0% |
| !!! | TTTTAGGGTGAATAAATGAA+GGG | - | chr4.4:42477389-42477408 | None:intergenic | 25.0% |
| AAAAACGTACAAAAAACAGC+TGG | + | chr4.4:42472941-42472960 | MS.gene61099:CDS | 30.0% | |
| AAACCCTCAAATTACAGTAT+TGG | + | chr4.4:42477199-42477218 | MS.gene61099:CDS | 30.0% | |
| AAATATTCAGTAGACAGATG+GGG | - | chr4.4:42477065-42477084 | None:intergenic | 30.0% | |
| AAGTTCTTTGAATTTGTGCT+AGG | - | chr4.4:42475783-42475802 | None:intergenic | 30.0% | |
| ACAGGGATAATTAGAAACAT+AGG | - | chr4.4:42474301-42474320 | None:intergenic | 30.0% | |
| ACATATTCAATTGTGAGATC+CGG | - | chr4.4:42476418-42476437 | None:intergenic | 30.0% | |
| ACTAGGGAAGTAAACTAATT+TGG | - | chr4.4:42478029-42478048 | None:intergenic | 30.0% | |
| AGACTTCTCTATTACAACAT+TGG | + | chr4.4:42474653-42474672 | MS.gene61099:intron | 30.0% | |
| AGATTTATGTTCCCTTTCTA+TGG | + | chr4.4:42473530-42473549 | MS.gene61099:intron | 30.0% | |
| AGCGCTAATTCTAAACAAAA+CGG | + | chr4.4:42472903-42472922 | MS.gene61099:CDS | 30.0% | |
| AGGATTTGTCTTTGTGAATT+AGG | + | chr4.4:42478079-42478098 | MS.gene61099:intron | 30.0% | |
| ATTTGTCTTTGTGAATTAGG+AGG | + | chr4.4:42478082-42478101 | MS.gene61099:intron | 30.0% | |
| CAACAAAGAAAATAGCAAAG+AGG | + | chr4.4:42477409-42477428 | MS.gene61099:intron | 30.0% | |
| CAATTAAATGGTCCTCAATT+AGG | - | chr4.4:42474110-42474129 | None:intergenic | 30.0% | |
| CCTTAACCTTTACAGAAAAA+AGG | - | chr4.4:42473649-42473668 | None:intergenic | 30.0% | |
| CTAAAGTGAATTACTCACTT+TGG | + | chr4.4:42476387-42476406 | MS.gene61099:intron | 30.0% | |
| CTAATTGAGGACCATTTAAT+TGG | + | chr4.4:42474108-42474127 | MS.gene61099:intron | 30.0% | |
| CTACTAATCACATCATAACA+AGG | - | chr4.4:42473988-42474007 | None:intergenic | 30.0% | |
| CTCAGTCAATAAAAAAACGA+GGG | + | chr4.4:42477441-42477460 | MS.gene61099:intron | 30.0% | |
| GAAGTCTGAACTACAAAATT+TGG | + | chr4.4:42474544-42474563 | MS.gene61099:intron | 30.0% | |
| GAGATAGTCTTTACAAAACT+TGG | + | chr4.4:42475461-42475480 | MS.gene61099:intron | 30.0% | |
| GCAATGGAAAGAACTAATAA+TGG | - | chr4.4:42473814-42473833 | None:intergenic | 30.0% | |
| GCTATATTACTAGTTGAAGT+CGG | - | chr4.4:42475697-42475716 | None:intergenic | 30.0% | |
| GCTATGTAACTGAATTATCT+TGG | + | chr4.4:42473323-42473342 | MS.gene61099:intron | 30.0% | |
| GTAAATATTCAGTAGACAGA+TGG | - | chr4.4:42477067-42477086 | None:intergenic | 30.0% | |
| TAAAGCTGTCTATAAGGATT+GGG | + | chr4.4:42475717-42475736 | MS.gene61099:intron | 30.0% | |
| TAAATCTAAATCAAGAGGTG+AGG | - | chr4.4:42475492-42475511 | None:intergenic | 30.0% | |
| TACGATAATACTTATGACAG+CGG | - | chr4.4:42477949-42477968 | None:intergenic | 30.0% | |
| TATAGCTAAAGCTGTCTATA+AGG | + | chr4.4:42475711-42475730 | MS.gene61099:intron | 30.0% | |
| TCACGTATATAGCAGAATTT+GGG | - | chr4.4:42473748-42473767 | None:intergenic | 30.0% | |
| TCTCAGTCAATAAAAAAACG+AGG | + | chr4.4:42477440-42477459 | MS.gene61099:intron | 30.0% | |
| TGCAGGATAATTTGAATACT+AGG | + | chr4.4:42473929-42473948 | MS.gene61099:CDS | 30.0% | |
| TGTAACCAGAATTTCGAAAA+TGG | - | chr4.4:42475007-42475026 | None:intergenic | 30.0% | |
| TTAACTCTCAAGTATATAGC+TGG | - | chr4.4:42474514-42474533 | None:intergenic | 30.0% | |
| TTATCATCTTTATGTTTGGC+AGG | + | chr4.4:42474262-42474281 | MS.gene61099:intron | 30.0% | |
| TTCACGTATATAGCAGAATT+TGG | - | chr4.4:42473749-42473768 | None:intergenic | 30.0% | |
| ! | ATTTGTGGTCTGTTCTTTTT+GGG | + | chr4.4:42475093-42475112 | MS.gene61099:intron | 30.0% |
| ! | ATTTTGCACAATTTCATGGA+TGG | - | chr4.4:42474759-42474778 | None:intergenic | 30.0% |
| ! | TCAACATTCTACAGTACTTT+TGG | - | chr4.4:42475310-42475329 | None:intergenic | 30.0% |
| ! | TTTCTCTTTGTTTCCAAACA+AGG | - | chr4.4:42476139-42476158 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAAGACTATCTC+AGG | - | chr4.4:42475461-42475480 | None:intergenic | 30.0% |
| !!! | CCTTTTTTCTGTAAAGGTTA+AGG | + | chr4.4:42473646-42473665 | MS.gene61099:intron | 30.0% |
| !!! | GTTTTAGGGTGAATAAATGA+AGG | - | chr4.4:42477390-42477409 | None:intergenic | 30.0% |
| !!! | TGTGCATAATTTTGCTATTC+CGG | + | chr4.4:42476000-42476019 | MS.gene61099:intron | 30.0% |
| AAACCCAAAAACCAGATCAA+GGG | - | chr4.4:42475752-42475771 | None:intergenic | 35.0% | |
| AAAGCAAACATGAGAACTAG+TGG | - | chr4.4:42477027-42477046 | None:intergenic | 35.0% | |
| AACAAACAACCAAGACGATT+AGG | - | chr4.4:42477305-42477324 | None:intergenic | 35.0% | |
| AAGTGAATTACTCACTTTGG+AGG | + | chr4.4:42476390-42476409 | MS.gene61099:intron | 35.0% | |
| AATCTACCAAGTCCATAGAA+AGG | - | chr4.4:42473545-42473564 | None:intergenic | 35.0% | |
| AATGAAAAGACTGTGTAGTC+TGG | + | chr4.4:42474967-42474986 | MS.gene61099:intron | 35.0% | |
| AATTCTTACAGTAGAAGAGC+TGG | + | chr4.4:42476852-42476871 | MS.gene61099:CDS | 35.0% | |
| ACAAAGACAAATCCTACTAG+AGG | - | chr4.4:42478074-42478093 | None:intergenic | 35.0% | |
| AGATTACCTGAAGAAAAGTC+TGG | - | chr4.4:42477364-42477383 | None:intergenic | 35.0% | |
| AGCAAATCGAGGTTTATCTT+GGG | - | chr4.4:42476974-42476993 | None:intergenic | 35.0% | |
| AGTTTCAAAATCTTGGTCAG+AGG | + | chr4.4:42476635-42476654 | MS.gene61099:intron | 35.0% | |
| ATATCTTTGTGCAAAGCCTT+TGG | - | chr4.4:42472979-42472998 | None:intergenic | 35.0% | |
| ATCATTCATGTTGAAACCCA+AGG | - | chr4.4:42475175-42475194 | None:intergenic | 35.0% | |
| ATCTACCAAGTCCATAGAAA+GGG | - | chr4.4:42473544-42473563 | None:intergenic | 35.0% | |
| ATTTGCATGGGAATTCTCAA+TGG | - | chr4.4:42477245-42477264 | None:intergenic | 35.0% | |
| CACAAAACCAAATACCTTTC+TGG | - | chr4.4:42475984-42476003 | None:intergenic | 35.0% | |
| CCACCAATACTGTAATTTGA+GGG | - | chr4.4:42477205-42477224 | None:intergenic | 35.0% | |
| CTAAAGCTGTCTATAAGGAT+TGG | + | chr4.4:42475716-42475735 | MS.gene61099:intron | 35.0% | |
| GATACTGAAGCAAAGATCAT+TGG | - | chr4.4:42477140-42477159 | None:intergenic | 35.0% | |
| GATTACCTGAAGAAAAGTCT+GGG | - | chr4.4:42477363-42477382 | None:intergenic | 35.0% | |
| GTATTCAAATTATCCTGCAC+AGG | - | chr4.4:42473928-42473947 | None:intergenic | 35.0% | |
| GTTGTTGATCATGAAGTACA+CGG | + | chr4.4:42477478-42477497 | MS.gene61099:intron | 35.0% | |
| TAGAAGCTGTGTAAAATCTG+TGG | - | chr4.4:42476768-42476787 | None:intergenic | 35.0% | |
| TATCTTTGTGCAAAGCCTTT+GGG | - | chr4.4:42472978-42472997 | None:intergenic | 35.0% | |
| TATTGAGCCGATAATGTACA+GGG | + | chr4.4:42475334-42475353 | MS.gene61099:intron | 35.0% | |
| TCCACCAATACTGTAATTTG+AGG | - | chr4.4:42477206-42477225 | None:intergenic | 35.0% | |
| TCTATCCAAGACCTGTTATT+GGG | + | chr4.4:42475555-42475574 | MS.gene61099:intron | 35.0% | |
| TGCTATATACGTGAAGCATA+TGG | + | chr4.4:42473754-42473773 | MS.gene61099:intron | 35.0% | |
| TGTAGTTCAGACTTCAGTTT+AGG | - | chr4.4:42474539-42474558 | None:intergenic | 35.0% | |
| TTAATACTCTCTCTTCTACC+AGG | + | chr4.4:42473777-42473796 | MS.gene61099:intron | 35.0% | |
| TTATTGAGCCGATAATGTAC+AGG | + | chr4.4:42475333-42475352 | MS.gene61099:intron | 35.0% | |
| TTCAGAAATATCTGCTGAAC+CGG | + | chr4.4:42473900-42473919 | MS.gene61099:CDS | 35.0% | |
| TTGAAACAATTGTTACCGGA+GGG | + | chr4.4:42475269-42475288 | MS.gene61099:intron | 35.0% | |
| TTGAGCGAGTTTCAAAATCT+TGG | + | chr4.4:42476628-42476647 | MS.gene61099:intron | 35.0% | |
| TTGATGTTCGAATTGTAGGT+AGG | - | chr4.4:42474942-42474961 | None:intergenic | 35.0% | |
| TTGTCTTCTTGATTGAGGTA+AGG | - | chr4.4:42476810-42476829 | None:intergenic | 35.0% | |
| TTTCTGTAAAGGTTAAGGAG+CGG | + | chr4.4:42473651-42473670 | MS.gene61099:intron | 35.0% | |
| ! | ATAATGGTCTTGATAGTACC+TGG | - | chr4.4:42473798-42473817 | None:intergenic | 35.0% |
| ! | CATTTGTGGTCTGTTCTTTT+TGG | + | chr4.4:42475092-42475111 | MS.gene61099:intron | 35.0% |
| ! | GTTGAGTCCAAATTCTAAGA+TGG | + | chr4.4:42475524-42475543 | MS.gene61099:intron | 35.0% |
| ! | TGTGTAGTCTGGTTTATTCA+TGG | + | chr4.4:42474978-42474997 | MS.gene61099:intron | 35.0% |
| ! | TTTGAAACAATTGTTACCGG+AGG | + | chr4.4:42475268-42475287 | MS.gene61099:intron | 35.0% |
| !! | AATCCATTTAAATGGTGGGT+AGG | - | chr4.4:42473165-42473184 | None:intergenic | 35.0% |
| !! | ATTGTTCTAAAATGGGCAAG+CGG | + | chr4.4:42477769-42477788 | MS.gene61099:CDS | 35.0% |
| !! | TAGTTTGCCAGAAAGGTATT+TGG | + | chr4.4:42475974-42475993 | MS.gene61099:intron | 35.0% |
| !! | TTAGTGCCTTATTTCCAACT+TGG | + | chr4.4:42474843-42474862 | MS.gene61099:intron | 35.0% |
| !!! | AGTTGCTTTTCACAATTGAG+CGG | + | chr4.4:42476191-42476210 | MS.gene61099:intron | 35.0% |
| !!! | TATTAACCTTTTGGCTCAGA+GGG | + | chr4.4:42474077-42474096 | MS.gene61099:intron | 35.0% |
| !!! | TTATTAACCTTTTGGCTCAG+AGG | + | chr4.4:42474076-42474095 | MS.gene61099:intron | 35.0% |
| AAAAACCAGATCAAGGGATG+AGG | - | chr4.4:42475746-42475765 | None:intergenic | 40.0% | |
| AAAACCAGATCAAGGGATGA+GGG | - | chr4.4:42475745-42475764 | None:intergenic | 40.0% | |
| AAATAACCCTCTGAGCCAAA+AGG | - | chr4.4:42474086-42474105 | None:intergenic | 40.0% | |
| AACGAAGAGCTGGAAAATCA+AGG | + | chr4.4:42475948-42475967 | MS.gene61099:CDS | 40.0% | |
| AAGTACTTAATCCCCGAGTT+GGG | - | chr4.4:42476523-42476542 | None:intergenic | 40.0% | |
| AATATGGGTGACCCAATAAC+AGG | - | chr4.4:42475569-42475588 | None:intergenic | 40.0% | |
| ACAGGATCTCAGTATTTGCA+TGG | - | chr4.4:42477258-42477277 | None:intergenic | 40.0% | |
| ACATTCCAGTGCATCAGTAA+AGG | - | chr4.4:42473842-42473861 | None:intergenic | 40.0% | |
| ACCATGCGTCAATGAAACAA+GGG | - | chr4.4:42473009-42473028 | None:intergenic | 40.0% | |
| ACGAAGAGCTGGAAAATCAA+GGG | + | chr4.4:42475949-42475968 | MS.gene61099:CDS | 40.0% | |
| ACTACGTCTACATCCAACTA+TGG | + | chr4.4:42477878-42477897 | MS.gene61099:CDS | 40.0% | |
| ACTTTATTCATCCCCAACTC+GGG | + | chr4.4:42476508-42476527 | MS.gene61099:intron | 40.0% | |
| AGGAAAGTGATCTTGCAGAA+TGG | - | chr4.4:42477285-42477304 | None:intergenic | 40.0% | |
| ATAAACGTGTTGCACAGACA+AGG | - | chr4.4:42477575-42477594 | None:intergenic | 40.0% | |
| ATCAGTAAAGGCTGTTGCAA+TGG | - | chr4.4:42473830-42473849 | None:intergenic | 40.0% | |
| ATCTTGCAGAATGGAAGAAC+AGG | - | chr4.4:42477276-42477295 | None:intergenic | 40.0% | |
| ATGTTCCCTTTCTATGGACT+TGG | + | chr4.4:42473536-42473555 | MS.gene61099:intron | 40.0% | |
| ATGTTTGGCAGGTTTCTTTC+TGG | + | chr4.4:42474273-42474292 | MS.gene61099:intron | 40.0% | |
| CAAACCCAAAAACCAGATCA+AGG | - | chr4.4:42475753-42475772 | None:intergenic | 40.0% | |
| CAACCAACATGCTCAGAAAA+CGG | - | chr4.4:42475119-42475138 | None:intergenic | 40.0% | |
| CAAGAAGACGTTGTAGAAAC+TGG | - | chr4.4:42474813-42474832 | None:intergenic | 40.0% | |
| CAATCAAGAAGACAATACGC+TGG | + | chr4.4:42476815-42476834 | MS.gene61099:CDS | 40.0% | |
| CACTTTATTCATCCCCAACT+CGG | + | chr4.4:42476507-42476526 | MS.gene61099:intron | 40.0% | |
| CAGGATCTCAGTATTTGCAT+GGG | - | chr4.4:42477257-42477276 | None:intergenic | 40.0% | |
| CATCGATGTTTGTGTACTTC+TGG | + | chr4.4:42473391-42473410 | MS.gene61099:intron | 40.0% | |
| CGGTCATCTAATACCATAGT+TGG | - | chr4.4:42477894-42477913 | None:intergenic | 40.0% | |
| GAGCAAATCGAGGTTTATCT+TGG | - | chr4.4:42476975-42476994 | None:intergenic | 40.0% | |
| GAGGGTTATTTGCCTAATTG+AGG | + | chr4.4:42474095-42474114 | MS.gene61099:intron | 40.0% | |
| GATCACTTTCCTAATCGTCT+TGG | + | chr4.4:42477293-42477312 | MS.gene61099:CDS | 40.0% | |
| GATCTTTGCTTCAGTATCAC+AGG | + | chr4.4:42477142-42477161 | MS.gene61099:intron | 40.0% | |
| GCACAAACACCACTAAATCA+TGG | - | chr4.4:42476725-42476744 | None:intergenic | 40.0% | |
| GCGTATTGTCTTCTTGATTG+AGG | - | chr4.4:42476815-42476834 | None:intergenic | 40.0% | |
| GCTGGAAATGTGGTCAAATA+TGG | + | chr4.4:42476870-42476889 | MS.gene61099:CDS | 40.0% | |
| GTCTATCCAAGACCTGTTAT+TGG | + | chr4.4:42475554-42475573 | MS.gene61099:intron | 40.0% | |
| GTTAAATGTGGGATCATCCA+GGG | - | chr4.4:42474174-42474193 | None:intergenic | 40.0% | |
| GTTAGTAGTCGTTAGTAGTC+TGG | + | chr4.4:42474713-42474732 | MS.gene61099:intron | 40.0% | |
| TAAAACTTCAGGAGCTCTCT+CGG | - | chr4.4:42475901-42475920 | None:intergenic | 40.0% | |
| TAACAAGCACCAACATCGAA+AGG | - | chr4.4:42475381-42475400 | None:intergenic | 40.0% | |
| TAAGTACTTAATCCCCGAGT+TGG | - | chr4.4:42476524-42476543 | None:intergenic | 40.0% | |
| TCAAAGCAACAACTATGACC+AGG | + | chr4.4:42477914-42477933 | MS.gene61099:CDS | 40.0% | |
| TCAAATATGGTGTTCTGGCA+TGG | + | chr4.4:42476883-42476902 | MS.gene61099:CDS | 40.0% | |
| TCAACACTGCCATCATATCT+TGG | + | chr4.4:42477726-42477745 | MS.gene61099:CDS | 40.0% | |
| TGTCTTTGTGAATTAGGAGG+TGG | + | chr4.4:42478085-42478104 | MS.gene61099:intron | 40.0% | |
| TGTGGTCAAATATGGTGTTC+TGG | + | chr4.4:42476878-42476897 | MS.gene61099:CDS | 40.0% | |
| TGTTAAATGTGGGATCATCC+AGG | - | chr4.4:42474175-42474194 | None:intergenic | 40.0% | |
| TTAGAGAGTAAAGCGAGCAA+AGG | - | chr4.4:42476371-42476390 | None:intergenic | 40.0% | |
| TTGCCTACCCACCATTTAAA+TGG | + | chr4.4:42473159-42473178 | MS.gene61099:CDS | 40.0% | |
| TTGTAGAGAACACCTCTAGT+AGG | + | chr4.4:42478059-42478078 | MS.gene61099:intron | 40.0% | |
| TTGTTTCCAAACAAGGAGAC+AGG | - | chr4.4:42476132-42476151 | None:intergenic | 40.0% | |
| ! | AGATAAACCTCGATTTGCTC+AGG | + | chr4.4:42476975-42476994 | MS.gene61099:CDS | 40.0% |
| ! | AGTGCACCAAGTTGGAAATA+AGG | - | chr4.4:42474852-42474871 | None:intergenic | 40.0% |
| ! | CCCTCAAATTACAGTATTGG+TGG | + | chr4.4:42477202-42477221 | MS.gene61099:CDS | 40.0% |
| ! | GGCTTCCATTTTCGAAATTC+TGG | + | chr4.4:42474999-42475018 | MS.gene61099:intron | 40.0% |
| ! | GTTCTAGTTGACTTAGTCCT+AGG | + | chr4.4:42475596-42475615 | MS.gene61099:intron | 40.0% |
| ! | TATTGCCCAGACTTTTCTTC+AGG | + | chr4.4:42477355-42477374 | MS.gene61099:CDS | 40.0% |
| ! | TGTTCCACGACGTTTTATGT+GGG | + | chr4.4:42473422-42473441 | MS.gene61099:intron | 40.0% |
| ! | TTGTAGAAACTGGTTCAGTG+TGG | - | chr4.4:42474803-42474822 | None:intergenic | 40.0% |
| ! | TTGTTCCACGACGTTTTATG+TGG | + | chr4.4:42473421-42473440 | MS.gene61099:intron | 40.0% |
| !! | AAACAAAACGGTGCTATCAC+TGG | + | chr4.4:42472915-42472934 | MS.gene61099:CDS | 40.0% |
| !! | AACAAAACGGTGCTATCACT+GGG | + | chr4.4:42472916-42472935 | MS.gene61099:CDS | 40.0% |
| !! | AAGGGATTAGTTTGCCAGAA+AGG | + | chr4.4:42475967-42475986 | MS.gene61099:CDS | 40.0% |
| !! | ATTTAAATGGTGGGTAGGCA+AGG | - | chr4.4:42473160-42473179 | None:intergenic | 40.0% |
| !! | GGTCATAGTTGTTGCTTTGA+CGG | - | chr4.4:42477914-42477933 | None:intergenic | 40.0% |
| !! | TTGCTGCTTTAGAAGCTGTA+AGG | + | chr4.4:42473078-42473097 | MS.gene61099:CDS | 40.0% |
| !!! | CATCCCTTGATCTGGTTTTT+GGG | + | chr4.4:42475746-42475765 | MS.gene61099:intron | 40.0% |
| !!! | CTGGTTTTTGGGTTTGAGTT+AGG | + | chr4.4:42475757-42475776 | MS.gene61099:intron | 40.0% |
| !!! | GTAGCCCCTTTTTTCTGTAA+AGG | + | chr4.4:42473640-42473659 | MS.gene61099:intron | 40.0% |
| !!! | TCATCCCTTGATCTGGTTTT+TGG | + | chr4.4:42475745-42475764 | MS.gene61099:intron | 40.0% |
| !!! | TTTTGGGTTGTCATAGCTCT+TGG | + | chr4.4:42477969-42477988 | MS.gene61099:CDS | 40.0% |
| AAAACTTCAGGAGCTCTCTC+GGG | - | chr4.4:42475900-42475919 | None:intergenic | 45.0% | |
| AAAGGTTAAGGAGCGGAGAA+CGG | + | chr4.4:42473658-42473677 | MS.gene61099:intron | 45.0% | |
| AAATTATCCTGCACAGGAGC+CGG | - | chr4.4:42473922-42473941 | None:intergenic | 45.0% | |
| AACAGCCTTTACTGATGCAC+TGG | + | chr4.4:42473834-42473853 | MS.gene61099:CDS | 45.0% | |
| ACAAATGCATAAGAGCCCTC+CGG | - | chr4.4:42475287-42475306 | None:intergenic | 45.0% | |
| ACACTGCCATCATATCTTGG+AGG | + | chr4.4:42477729-42477748 | MS.gene61099:CDS | 45.0% | |
| ACAGACCCTGTCTCATTGTA+AGG | + | chr4.4:42476920-42476939 | MS.gene61099:CDS | 45.0% | |
| ACGAACCTGGTGTGTAAGAT+AGG | + | chr4.4:42478003-42478022 | MS.gene61099:intron | 45.0% | |
| AGAGTGCAACCTCATGAAAC+TGG | + | chr4.4:42477795-42477814 | MS.gene61099:CDS | 45.0% | |
| AGTACTTAATCCCCGAGTTG+GGG | - | chr4.4:42476522-42476541 | None:intergenic | 45.0% | |
| AGTAGTCGTTAGTAGTCTGG+TGG | + | chr4.4:42474716-42474735 | MS.gene61099:intron | 45.0% | |
| CACCATGCGTCAATGAAACA+AGG | - | chr4.4:42473010-42473029 | None:intergenic | 45.0% | |
| CAGCAGCAGCAGAATTGTTA+GGG | + | chr4.4:42477821-42477840 | MS.gene61099:CDS | 45.0% | |
| CAGTAGAAGAGCTGGAAATG+TGG | + | chr4.4:42476860-42476879 | MS.gene61099:CDS | 45.0% | |
| CCAAGCCTTACAATGAGACA+GGG | - | chr4.4:42476928-42476947 | None:intergenic | 45.0% | |
| CCATGCGTCAATGAAACAAG+GGG | - | chr4.4:42473008-42473027 | None:intergenic | 45.0% | |
| CCTGTCTCATTGTAAGGCTT+GGG | + | chr4.4:42476926-42476945 | MS.gene61099:CDS | 45.0% | |
| CTAATTGCCTGAGCAAATCG+AGG | - | chr4.4:42476985-42477004 | None:intergenic | 45.0% | |
| CTGGTTCAGTGTGGTACAAT+CGG | - | chr4.4:42474794-42474813 | None:intergenic | 45.0% | |
| CTTGGTTTCTTCTGTTGCAG+TGG | + | chr4.4:42476698-42476717 | MS.gene61099:intron | 45.0% | |
| CTTTATTCATCCCCAACTCG+GGG | + | chr4.4:42476509-42476528 | MS.gene61099:intron | 45.0% | |
| GAGTGCAACCTCATGAAACT+GGG | + | chr4.4:42477796-42477815 | MS.gene61099:CDS | 45.0% | |
| GATATGCAACAACCAAACCC+TGG | + | chr4.4:42474154-42474173 | MS.gene61099:intron | 45.0% | |
| GATGCACTGGAATGTAGTGA+TGG | + | chr4.4:42473847-42473866 | MS.gene61099:CDS | 45.0% | |
| GCAATAACACGAGCAATTGC+TGG | - | chr4.4:42477341-42477360 | None:intergenic | 45.0% | |
| GGATGATATCAGTGACAACG+AGG | + | chr4.4:42477845-42477864 | MS.gene61099:CDS | 45.0% | |
| GGGCGCATCAAATATTGAAG+AGG | + | chr4.4:42477546-42477565 | MS.gene61099:intron | 45.0% | |
| GTAACCCACATAAAACGTCG+TGG | - | chr4.4:42473429-42473448 | None:intergenic | 45.0% | |
| GTTGGATGTAGACGTAGTGA+TGG | - | chr4.4:42477876-42477895 | None:intergenic | 45.0% | |
| TCAAGAAGACAATACGCTGG+CGG | + | chr4.4:42476818-42476837 | MS.gene61099:CDS | 45.0% | |
| TCAATATTTGATGCGCCCCT+AGG | - | chr4.4:42477544-42477563 | None:intergenic | 45.0% | |
| TCATTGACGCATGGTGACTT+TGG | + | chr4.4:42473014-42473033 | MS.gene61099:CDS | 45.0% | |
| TCGAAAGGCTACGGTTGATT+TGG | - | chr4.4:42475366-42475385 | None:intergenic | 45.0% | |
| TCGGATCTCAAAACACACAC+AGG | - | chr4.4:42475678-42475697 | None:intergenic | 45.0% | |
| TCTACTCCTGTCTCCTTGTT+TGG | + | chr4.4:42476123-42476142 | MS.gene61099:intron | 45.0% | |
| TCTCAAAACACACACAGGAC+TGG | - | chr4.4:42475673-42475692 | None:intergenic | 45.0% | |
| TGACTTAGTCCTAGGCATGA+GGG | + | chr4.4:42475604-42475623 | MS.gene61099:intron | 45.0% | |
| TGCAGTGGACCATGATTTAG+TGG | + | chr4.4:42476713-42476732 | MS.gene61099:intron | 45.0% | |
| TGTGAATTAGGAGGTGGCAA+TGG | + | chr4.4:42478091-42478110 | MS.gene61099:intron | 45.0% | |
| TTGACTTAGTCCTAGGCATG+AGG | + | chr4.4:42475603-42475622 | MS.gene61099:intron | 45.0% | |
| TTTGGCCTATCTTACACACC+AGG | - | chr4.4:42478011-42478030 | None:intergenic | 45.0% | |
| ! | AGAGTCTAGCAGAGTCTTGT+TGG | + | chr4.4:42474883-42474902 | MS.gene61099:intron | 45.0% |
| ! | AGTCGTCTGTACGCTCTTTT+TGG | + | chr4.4:42476305-42476324 | MS.gene61099:intron | 45.0% |
| ! | ATTACTCACTTTGGAGGAGC+CGG | + | chr4.4:42476396-42476415 | MS.gene61099:intron | 45.0% |
| ! | CGAAAGGCTACGGTTGATTT+GGG | - | chr4.4:42475365-42475384 | None:intergenic | 45.0% |
| ! | GGGTTTGGTTAAAAGCATGC+AGG | + | chr4.4:42473205-42473224 | MS.gene61099:CDS | 45.0% |
| !! | ACAGTATTGGTGGACTGTGA+AGG | + | chr4.4:42477212-42477231 | MS.gene61099:CDS | 45.0% |
| !! | GAAAGGCTACGGTTGATTTG+GGG | - | chr4.4:42475364-42475383 | None:intergenic | 45.0% |
| !! | TCAAAAGTGGGCTGTGTTCA+GGG | + | chr4.4:42473184-42473203 | MS.gene61099:CDS | 45.0% |
| !! | TTCAAAAGTGGGCTGTGTTC+AGG | + | chr4.4:42473183-42473202 | MS.gene61099:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTATAAGAT+TGG | - | chr4.4:42475232-42475251 | None:intergenic | 5.0% |
| AGAGCGTGGAAAATAGCAGG+TGG | - | chr4.4:42475644-42475663 | None:intergenic | 50.0% | |
| AGAGTAGATGCCCTTGTGTC+TGG | + | chr4.4:42473111-42473130 | MS.gene61099:CDS | 50.0% | |
| ATGTGGGATCATCCAGGGTT+TGG | - | chr4.4:42474169-42474188 | None:intergenic | 50.0% | |
| CAACCGTAGCCTTTCGATGT+TGG | + | chr4.4:42475369-42475388 | MS.gene61099:intron | 50.0% | |
| CAAGAAGACAATACGCTGGC+GGG | + | chr4.4:42476819-42476838 | MS.gene61099:CDS | 50.0% | |
| CAGCAGCAGAATTGTTAGGG+AGG | + | chr4.4:42477824-42477843 | MS.gene61099:CDS | 50.0% | |
| CAGCTGCCTCCAAGATATGA+TGG | - | chr4.4:42477738-42477757 | None:intergenic | 50.0% | |
| CCAGCAGCAGCAGAATTGTT+AGG | + | chr4.4:42477820-42477839 | MS.gene61099:CDS | 50.0% | |
| CCCAAGCCTTACAATGAGAC+AGG | - | chr4.4:42476929-42476948 | None:intergenic | 50.0% | |
| CCCTGTCTCATTGTAAGGCT+TGG | + | chr4.4:42476925-42476944 | MS.gene61099:CDS | 50.0% | |
| CCTAACAATTCTGCTGCTGC+TGG | - | chr4.4:42477823-42477842 | None:intergenic | 50.0% | |
| CGTAGAGCGTGGAAAATAGC+AGG | - | chr4.4:42475647-42475666 | None:intergenic | 50.0% | |
| GACTCAACTCAACGAAGAGC+TGG | + | chr4.4:42475938-42475957 | MS.gene61099:CDS | 50.0% | |
| GACTTAGTCCTAGGCATGAG+GGG | + | chr4.4:42475605-42475624 | MS.gene61099:intron | 50.0% | |
| GAGTCAGCACTTGCATCAGT+TGG | - | chr4.4:42474589-42474608 | None:intergenic | 50.0% | |
| GCACCAACATCGAAAGGCTA+CGG | - | chr4.4:42475375-42475394 | None:intergenic | 50.0% | |
| GGGTCAGCCCTGTACATTAT+CGG | - | chr4.4:42475344-42475363 | None:intergenic | 50.0% | |
| GGTGACCCAATAACAGGTCT+TGG | - | chr4.4:42475563-42475582 | None:intergenic | 50.0% | |
| TCCTGCAAAGTGCACCAAGT+TGG | - | chr4.4:42474860-42474879 | None:intergenic | 50.0% | |
| ! | ACTTTGGAAGCAGTGCTGTG+GGG | + | chr4.4:42473030-42473049 | MS.gene61099:CDS | 50.0% |
| ! | CCCCTTGTTTCATTGACGCA+TGG | + | chr4.4:42473005-42473024 | MS.gene61099:CDS | 50.0% |
| ! | GACTTTGGAAGCAGTGCTGT+GGG | + | chr4.4:42473029-42473048 | MS.gene61099:CDS | 50.0% |
| ! | GTTGTCATAGCTCTTGGTGC+TGG | + | chr4.4:42477975-42477994 | MS.gene61099:CDS | 50.0% |
| ! | TGACTTTGGAAGCAGTGCTG+TGG | + | chr4.4:42473028-42473047 | MS.gene61099:CDS | 50.0% |
| ! | TGGGATAGCTTGCAGCACAT+TGG | + | chr4.4:42476945-42476964 | MS.gene61099:CDS | 50.0% |
| !! | CAAAAGTGGGCTGTGTTCAG+GGG | + | chr4.4:42473185-42473204 | MS.gene61099:CDS | 50.0% |
| !! | TCCAACTTGGTGCACTTTGC+AGG | + | chr4.4:42474856-42474875 | MS.gene61099:intron | 50.0% |
| !! | TCTCGGGTTGACTGCGAAAA+AGG | - | chr4.4:42475884-42475903 | None:intergenic | 50.0% |
| AGATGCCCTTGTGTCTGGCA+AGG | + | chr4.4:42473116-42473135 | MS.gene61099:CDS | 55.0% | |
| CTGCTGGTCCCAGTTTCATG+AGG | - | chr4.4:42477807-42477826 | None:intergenic | 55.0% | |
| GCAGACCTTGCCAGACACAA+GGG | - | chr4.4:42473124-42473143 | None:intergenic | 55.0% | |
| GGAACCCTCATCCCTTGATC+TGG | + | chr4.4:42475738-42475757 | MS.gene61099:intron | 55.0% | |
| TGACAGCGGTTCTCAACACC+TGG | - | chr4.4:42477935-42477954 | None:intergenic | 55.0% | |
| TGCAGACCTTGCCAGACACA+AGG | - | chr4.4:42473125-42473144 | None:intergenic | 55.0% | |
| TGTGTCTGGCAAGGTCTGCA+GGG | + | chr4.4:42473125-42473144 | MS.gene61099:CDS | 55.0% | |
| TTGTGTCTGGCAAGGTCTGC+AGG | + | chr4.4:42473124-42473143 | MS.gene61099:CDS | 55.0% | |
| ! | GGTGCTGGAGTATACGAACC+TGG | + | chr4.4:42477990-42478009 | MS.gene61099:CDS | 55.0% |
| !! | GCATGAGGGGTGTTCTCGTT+TGG | + | chr4.4:42475618-42475637 | MS.gene61099:intron | 55.0% |
| !! | GGGCCGTTTTCTGAGCATGT+TGG | + | chr4.4:42475113-42475132 | MS.gene61099:intron | 55.0% |
| AGGACTGGACACGTAGAGCG+TGG | - | chr4.4:42475658-42475677 | None:intergenic | 60.0% | |
| CGAGAACACCCCTCATGCCT+AGG | - | chr4.4:42475616-42475635 | None:intergenic | 60.0% | |
| ! | GTGGGCTGTGTTCAGGGGTT+TGG | + | chr4.4:42473190-42473209 | MS.gene61099:CDS | 60.0% |
| CTGGTTGCGTCGCGTCCCAA+AGG | + | chr4.4:42472960-42472979 | MS.gene61099:CDS | 65.0% | |
| ! | TGCTGAACCGGCTCCTGTGC+AGG | + | chr4.4:42473912-42473931 | MS.gene61099:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 42472867 | 42478171 | 42472867 | ID=MS.gene61099 |
| chr4.4 | mRNA | 42472867 | 42478171 | 42472867 | ID=MS.gene61099.t1;Parent=MS.gene61099 |
| chr4.4 | exon | 42472867 | 42473226 | 42472867 | ID=MS.gene61099.t1.exon1;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42472867 | 42473226 | 42472867 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42473799 | 42473950 | 42473799 | ID=MS.gene61099.t1.exon2;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42473799 | 42473950 | 42473799 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42475893 | 42475988 | 42475893 | ID=MS.gene61099.t1.exon3;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42475893 | 42475988 | 42475893 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42476747 | 42477003 | 42476747 | ID=MS.gene61099.t1.exon4;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42476747 | 42477003 | 42476747 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42477156 | 42477376 | 42477156 | ID=MS.gene61099.t1.exon5;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42477156 | 42477376 | 42477156 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42477651 | 42478011 | 42477651 | ID=MS.gene61099.t1.exon6;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42477651 | 42478011 | 42477651 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| chr4.4 | exon | 42478101 | 42478171 | 42478101 | ID=MS.gene61099.t1.exon7;Parent=MS.gene61099.t1 |
| chr4.4 | CDS | 42478101 | 42478171 | 42478101 | ID=cds.MS.gene61099.t1;Parent=MS.gene61099.t1 |
| Gene Sequence |
| Protein sequence |
