Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61116.t1 | XP_003618301.1 | 90.6 | 213 | 20 | 0 | 1 | 213 | 1 | 213 | 5.30E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61116.t1 | G7KIS9 | 90.6 | 213 | 20 | 0 | 1 | 213 | 1 | 213 | 3.8e-108 | 401.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058515 | MS.gene61116 | 0.806445 | 8.20E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene61116 | 0.801285 | 9.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61116.t1 | MTR_6g007360 | 90.610 | 213 | 20 | 0 | 1 | 213 | 1 | 213 | 6.94e-135 | 387 |
| MS.gene61116.t1 | MTR_6g007360 | 90.173 | 173 | 17 | 0 | 236 | 408 | 19 | 191 | 8.23e-113 | 331 |
| MS.gene61116.t1 | MTR_1g115165 | 90.610 | 213 | 20 | 0 | 1 | 213 | 1 | 213 | 1.10e-134 | 386 |
| MS.gene61116.t1 | MTR_1g115165 | 90.173 | 173 | 17 | 0 | 236 | 408 | 19 | 191 | 1.51e-112 | 330 |
| MS.gene61116.t1 | MTR_7g446320 | 85.340 | 191 | 28 | 0 | 23 | 213 | 9 | 199 | 1.29e-109 | 322 |
| MS.gene61116.t1 | MTR_7g446320 | 85.207 | 169 | 25 | 0 | 240 | 408 | 9 | 177 | 1.50e-102 | 304 |
| MS.gene61116.t1 | MTR_4g078180 | 90.361 | 166 | 16 | 0 | 1 | 166 | 1 | 166 | 4.03e-109 | 318 |
| MS.gene61116.t1 | MTR_4g078180 | 90.541 | 148 | 14 | 0 | 236 | 383 | 19 | 166 | 1.14e-95 | 284 |
| MS.gene61116.t1 | MTR_3g022250 | 63.850 | 213 | 14 | 2 | 1 | 213 | 1 | 150 | 7.75e-84 | 254 |
| MS.gene61116.t1 | MTR_3g022250 | 59.116 | 181 | 11 | 2 | 236 | 416 | 19 | 136 | 6.15e-61 | 196 |
| MS.gene61116.t1 | MTR_5g094775 | 89.381 | 113 | 12 | 0 | 46 | 158 | 1 | 113 | 2.89e-67 | 215 |
| MS.gene61116.t1 | MTR_5g094775 | 88.496 | 113 | 13 | 0 | 264 | 376 | 2 | 114 | 2.04e-66 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGCTCCGGCAGTGGTTC+TGG | 0.133998 | 4.4:+42631878 | None:intergenic |
| ATGGCTATGATTAAAGAATT+TGG | 0.165621 | 4.4:-42632232 | MS.gene61116:CDS |
| ATGGCCATGATTAGAGAATT+TGG | 0.218589 | 4.4:-42630884 | MS.gene61116:CDS |
| AAAGTTTGTTGATGCTAAAA+TGG | 0.275610 | 4.4:-42630696 | MS.gene61116:CDS |
| CCTTCCTTCTCCATCGTTGA+TGG | 0.291087 | 4.4:+42630748 | None:intergenic |
| TATAAACTATCACAATTTAC+TGG | 0.291836 | 4.4:-42632427 | MS.gene61116:CDS |
| TCTGTCATCTTCCACAGTTT+TGG | 0.311646 | 4.4:+42630800 | None:intergenic |
| TCTGTCATCTTCCACAGTTT+TGG | 0.311646 | 4.4:+42632148 | None:intergenic |
| GCAGTGGGCTTTCACGAGTA+TGG | 0.337039 | 4.4:-42630981 | MS.gene61116:CDS |
| AGTCGCAAGGATAATAGAAT+TGG | 0.354059 | 4.4:-42632001 | MS.gene61116:CDS |
| TATGACTTCCAGTCAGCATC+TGG | 0.356641 | 4.4:+42632259 | None:intergenic |
| AATGACTTCCAGTCAACATC+TGG | 0.359105 | 4.4:+42630911 | None:intergenic |
| TTGACGGTCTTCTCTAAAAC+TGG | 0.364646 | 4.4:+42632112 | None:intergenic |
| AGTCAGCATCTGGGTTCTCT+TGG | 0.369174 | 4.4:+42632269 | None:intergenic |
| AGTCGCAAGGATAATAGAAT+TGG | 0.376598 | 4.4:-42630653 | MS.gene61116:CDS |
| AGTCAACATCTGGGTTCTCT+TGG | 0.379830 | 4.4:+42630921 | None:intergenic |
| CCTTCCTTCTCCATCGTTGA+CGG | 0.385198 | 4.4:+42632096 | None:intergenic |
| ATGGCTCCGGCAGTGGTTCT+GGG | 0.393776 | 4.4:+42631879 | None:intergenic |
| TATCGGAGATGGATGGAATA+TGG | 0.395548 | 4.4:-42632459 | None:intergenic |
| TCCCTCAGAATTTGAAAGAA+AGG | 0.401368 | 4.4:-42631856 | MS.gene61116:CDS |
| GTCGCAAGGATAATAGAATT+GGG | 0.403256 | 4.4:-42632000 | MS.gene61116:CDS |
| TGACTGGAAGTCATATTCTA+TGG | 0.408881 | 4.4:-42632251 | MS.gene61116:CDS |
| CTCCTTTCTTTCAAATTCTG+AGG | 0.418454 | 4.4:+42631854 | None:intergenic |
| GTCGCAAGGATAATAGAATT+GGG | 0.427469 | 4.4:-42630652 | MS.gene61116:CDS |
| AATTTCACCTTCGTCGGAAA+AGG | 0.439918 | 4.4:-42632062 | MS.gene61116:CDS |
| TCTTTCAAATTCTGAGGGAA+TGG | 0.442393 | 4.4:+42631860 | None:intergenic |
| TTCTTTCAAATTCAGAGGAA+TGG | 0.448100 | 4.4:+42630512 | None:intergenic |
| GAAGAGTATTGAACGAGAAA+GGG | 0.450654 | 4.4:-42630628 | MS.gene61116:CDS |
| AATGGCTCCAGCGGAGGTTG+TGG | 0.456963 | 4.4:+42630530 | None:intergenic |
| GGAAGAGTATTGAACGAGAA+AGG | 0.469026 | 4.4:-42630629 | MS.gene61116:CDS |
| AAAAGGAGAGCAAGAGGGTG+GGG | 0.473039 | 4.4:-42631906 | MS.gene61116:CDS |
| AAAGGTTGTTGATGCAGAAA+TGG | 0.473464 | 4.4:-42632044 | MS.gene61116:CDS |
| GCAGTGGGCTTTCATGAGAA+TGG | 0.479544 | 4.4:-42632329 | MS.gene61116:CDS |
| TGAGGGAATGGCTCCGGCAG+TGG | 0.480629 | 4.4:+42631872 | None:intergenic |
| AGAAAAGGAGAGCAAGAGGG+TGG | 0.484981 | 4.4:-42631908 | MS.gene61116:CDS |
| TGCTCCAAATTCTCTAATCA+TGG | 0.486981 | 4.4:+42630880 | None:intergenic |
| AAGAGAACCCAGATGCTGAC+TGG | 0.487075 | 4.4:-42632267 | MS.gene61116:CDS |
| TAGAGAATTTGGAGCACAGA+TGG | 0.487834 | 4.4:-42630873 | MS.gene61116:CDS |
| GCACTCAACATATAAACAAA+TGG | 0.496359 | 4.4:-42632197 | MS.gene61116:CDS |
| TAAAGAATTTGGAGCACAGA+TGG | 0.498170 | 4.4:-42632221 | MS.gene61116:CDS |
| TCCTTTCTTTCAAATTCTGA+GGG | 0.504376 | 4.4:+42631855 | None:intergenic |
| AAATTCTGAGGGAATGGCTC+CGG | 0.505256 | 4.4:+42631866 | None:intergenic |
| CAATGAAATTTCACCTTCGT+CGG | 0.515152 | 4.4:-42630720 | MS.gene61116:CDS |
| AAGAGAACCCAGATGTTGAC+TGG | 0.528701 | 4.4:-42630919 | MS.gene61116:CDS |
| ATGGCTCCAGCGGAGGTTGT+GGG | 0.533661 | 4.4:+42630531 | None:intergenic |
| TTTACTGGGACGGATCCTGC+TGG | 0.541794 | 4.4:-42632412 | MS.gene61116:CDS |
| ATCCTGCTGGATGGATCACA+AGG | 0.542589 | 4.4:-42631051 | MS.gene61116:CDS |
| GGTTTACCCACAACCTCCGC+TGG | 0.547012 | 4.4:-42630537 | MS.gene61116:CDS |
| GCACTCAACAGATAAACAAA+TGG | 0.550205 | 4.4:-42630849 | MS.gene61116:CDS |
| CAATGAAATTTCACCTTCGT+CGG | 0.551705 | 4.4:-42632068 | MS.gene61116:CDS |
| TCTTACATGACAGTTAGAAA+AGG | 0.551765 | 4.4:-42631923 | MS.gene61116:CDS |
| CTGGGACGGATCCTGCTGGA+TGG | 0.552576 | 4.4:-42632408 | MS.gene61116:CDS |
| ATCCTGCTGGATGGATCACA+AGG | 0.555428 | 4.4:-42632399 | MS.gene61116:CDS |
| GCCCTTGTGATCCATCCAGC+AGG | 0.555500 | 4.4:+42631049 | None:intergenic |
| GCCCTTGTGATCCATCCAGC+AGG | 0.555500 | 4.4:+42632397 | None:intergenic |
| CTGGGACAGATCCTGCTGGA+TGG | 0.566751 | 4.4:-42631060 | MS.gene61116:intron |
| CTCATGTGATAAGTTGCAGT+GGG | 0.571745 | 4.4:-42630996 | MS.gene61116:CDS |
| CTCATGTGATAAGTTGCAGT+GGG | 0.571745 | 4.4:-42632344 | MS.gene61116:CDS |
| GAAAAGGAGAGCAAGAGGGT+GGG | 0.572558 | 4.4:-42631907 | MS.gene61116:CDS |
| AAGACCGTCAACGATGGAGA+AGG | 0.572833 | 4.4:-42632100 | MS.gene61116:CDS |
| AAGACCATCAACGATGGAGA+AGG | 0.574882 | 4.4:-42630752 | MS.gene61116:CDS |
| GGTCTACCCAGAACCACTGC+CGG | 0.576812 | 4.4:-42631885 | MS.gene61116:CDS |
| AGTTAGAAAAGGAGAGCAAG+AGG | 0.579152 | 4.4:-42631912 | MS.gene61116:CDS |
| ATGACTTCCAGTCAACATCT+GGG | 0.601715 | 4.4:+42630912 | None:intergenic |
| ACTATCACAATTTACTGGGA+CGG | 0.602646 | 4.4:-42632422 | MS.gene61116:CDS |
| ATTCAGAGGAATGGCTCCAG+CGG | 0.606408 | 4.4:+42630521 | None:intergenic |
| ATGACTTCCAGTCAGCATCT+GGG | 0.606726 | 4.4:+42632260 | None:intergenic |
| CAGAGGAATGGCTCCAGCGG+AGG | 0.612958 | 4.4:+42630524 | None:intergenic |
| TCGCAAGGATAATAGAATTG+GGG | 0.613970 | 4.4:-42630651 | MS.gene61116:CDS |
| TTTACTGGGACAGATCCTGC+TGG | 0.616160 | 4.4:-42631064 | MS.gene61116:intron |
| AGGATGAAGAAGCGTTGTTG+TGG | 0.617881 | 4.4:-42630958 | MS.gene61116:CDS |
| ATAAACTATCACAATTTACT+GGG | 0.624745 | 4.4:-42632426 | MS.gene61116:CDS |
| CGCAAGGATAATAGAATTGG+GGG | 0.628383 | 4.4:-42630650 | MS.gene61116:CDS |
| CCAGTGTTATCGGAGATGGA+TGG | 0.628923 | 4.4:-42632466 | None:intergenic |
| TCGCAAGGATAATAGAATTG+GGG | 0.629647 | 4.4:-42631999 | MS.gene61116:CDS |
| AAGAATCAAAACCAAAACTG+TGG | 0.633211 | 4.4:-42630811 | MS.gene61116:CDS |
| AAGAGTATTGAACGAGAAAG+GGG | 0.634312 | 4.4:-42630627 | MS.gene61116:CDS |
| AGAGAAATGTCTCTTCTCTG+AGG | 0.636131 | 4.4:-42631416 | MS.gene61116:CDS |
| ACTCATGTGATAAGTTGCAG+TGG | 0.639256 | 4.4:-42630997 | MS.gene61116:CDS |
| ACTCATGTGATAAGTTGCAG+TGG | 0.639256 | 4.4:-42632345 | MS.gene61116:CDS |
| GTTAGAAAAGGAGAGCAAGA+GGG | 0.647833 | 4.4:-42631911 | MS.gene61116:CDS |
| GTGGGCTTTCACGAGTATGG+AGG | 0.656094 | 4.4:-42630978 | MS.gene61116:CDS |
| TGAAACTAAGAAGAGTCGCA+AGG | 0.656222 | 4.4:-42632014 | MS.gene61116:CDS |
| AGGATGAACAAGCATTGTTG+TGG | 0.657464 | 4.4:-42632306 | MS.gene61116:CDS |
| TCAAACAAAGAAGAGTCGCA+AGG | 0.658704 | 4.4:-42630666 | MS.gene61116:CDS |
| TTAGAGAAGACCGTCAACGA+TGG | 0.659626 | 4.4:-42632106 | MS.gene61116:CDS |
| AAGAATCAGAACCAAAACTG+TGG | 0.662681 | 4.4:-42632159 | MS.gene61116:CDS |
| CCATCAACGATGGAGAAGGA+AGG | 0.665295 | 4.4:-42630748 | MS.gene61116:CDS |
| CCGTCAACGATGGAGAAGGA+AGG | 0.677714 | 4.4:-42632096 | MS.gene61116:CDS |
| TTAGAGAAGACCATCAACGA+TGG | 0.682516 | 4.4:-42630758 | MS.gene61116:CDS |
| TCCTGCTGGATGGATCACAA+GGG | 0.706065 | 4.4:-42632398 | MS.gene61116:CDS |
| TCCTGCTGGATGGATCACAA+GGG | 0.711736 | 4.4:-42631050 | MS.gene61116:CDS |
| GTGGGCTTTCATGAGAATGG+AGG | 0.718825 | 4.4:-42632326 | MS.gene61116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTATCACAATTTACT+GGG | - | chr4.4:42630548-42630567 | MS.gene61116:CDS | 20.0% |
| !! | CAAATATAAAACTTTGTATG+TGG | - | chr4.4:42631146-42631165 | MS.gene61116:intron | 20.0% |
| !! | CCAACTTAATATTATACAAA+AGG | + | chr4.4:42631652-42631671 | None:intergenic | 20.0% |
| !! | GAATTCAGAATTATTCAATT+AGG | - | chr4.4:42631512-42631531 | MS.gene61116:intron | 20.0% |
| !! | TATAAACTATCACAATTTAC+TGG | - | chr4.4:42630547-42630566 | MS.gene61116:CDS | 20.0% |
| !! | TTTGTATAAATAAAGCCATT+TGG | - | chr4.4:42631474-42631493 | MS.gene61116:intron | 20.0% |
| !!! | ATATTAAGTTGGAAGTTATT+AGG | - | chr4.4:42631660-42631679 | MS.gene61116:intron | 20.0% |
| !!! | CCTTTTGTATAATATTAAGT+TGG | - | chr4.4:42631649-42631668 | MS.gene61116:intron | 20.0% |
| !!! | GCTTTATTTATACAAACAAA+GGG | + | chr4.4:42631470-42631489 | None:intergenic | 20.0% |
| ! | ATGGCTATGATTAAAGAATT+TGG | - | chr4.4:42630742-42630761 | MS.gene61116:CDS | 25.0% |
| ! | TAATTCTGATCTCTATCAAT+TGG | - | chr4.4:42631806-42631825 | MS.gene61116:intron | 25.0% |
| ! | TATTCAATTAGGAACCTTAT+TGG | - | chr4.4:42631523-42631542 | MS.gene61116:intron | 25.0% |
| !!! | AAAGTTTGTTGATGCTAAAA+TGG | - | chr4.4:42632278-42632297 | MS.gene61116:CDS | 25.0% |
| !!! | CATTGTTGTGGTTTTATTAT+TGG | - | chr4.4:42630680-42630699 | MS.gene61116:CDS | 25.0% |
| !!! | GATTTTCATTGATTTAGGAA+AGG | + | chr4.4:42631756-42631775 | None:intergenic | 25.0% |
| !!! | GGCTTTATTTATACAAACAA+AGG | + | chr4.4:42631471-42631490 | None:intergenic | 25.0% |
| !!! | TAATTTGTATTGATTAGGAG+CGG | - | chr4.4:42631428-42631447 | MS.gene61116:intron | 25.0% |
| !!! | TGCAGTAATTTGTATTGATT+AGG | - | chr4.4:42631423-42631442 | MS.gene61116:CDS | 25.0% |
| AAGAATCAAAACCAAAACTG+TGG | - | chr4.4:42632163-42632182 | MS.gene61116:CDS | 30.0% | |
| ATAAAACTTTGTATGTGGCT+TGG | - | chr4.4:42631151-42631170 | MS.gene61116:intron | 30.0% | |
| GAAGTTATTAGGAAGTTACT+AGG | - | chr4.4:42631671-42631690 | MS.gene61116:intron | 30.0% | |
| GCACTCAACATATAAACAAA+TGG | - | chr4.4:42630777-42630796 | MS.gene61116:CDS | 30.0% | |
| TCCTTTCTTTCAAATTCTGA+GGG | + | chr4.4:42631122-42631141 | None:intergenic | 30.0% | |
| TCTTACATGACAGTTAGAAA+AGG | - | chr4.4:42631051-42631070 | MS.gene61116:CDS | 30.0% | |
| !! | GAAAAAGTATTGAACGAGAA+AGG | - | chr4.4:42630997-42631016 | MS.gene61116:CDS | 30.0% |
| !!! | CTTGCGATTTTCATTGATTT+AGG | + | chr4.4:42631761-42631780 | None:intergenic | 30.0% |
| !!! | TTAGGAACCTTATTGGTTTT+AGG | - | chr4.4:42631530-42631549 | MS.gene61116:intron | 30.0% |
| AAAGGTTGTTGATGCAGAAA+TGG | - | chr4.4:42630930-42630949 | MS.gene61116:CDS | 35.0% | |
| AAGAATCAGAACCAAAACTG+TGG | - | chr4.4:42630815-42630834 | MS.gene61116:CDS | 35.0% | |
| ACTATCACAATTTACTGGGA+CGG | - | chr4.4:42630552-42630571 | MS.gene61116:CDS | 35.0% | |
| AGTCGCAAGGATAATAGAAT+TGG | - | chr4.4:42630973-42630992 | MS.gene61116:CDS | 35.0% | |
| AGTTAGAAAAAGAGAGCAAG+AGG | - | chr4.4:42632410-42632429 | MS.gene61116:CDS | 35.0% | |
| ATGGCCATGATTAGAGAATT+TGG | - | chr4.4:42632090-42632109 | MS.gene61116:CDS | 35.0% | |
| CAATGAAATTTCACCTTCGT+CGG | - | chr4.4:42630906-42630925 | MS.gene61116:CDS | 35.0% | |
| CTCCTTTCTTTCAAATTCTG+AGG | + | chr4.4:42631123-42631142 | None:intergenic | 35.0% | |
| GCACTCAACAGATAAACAAA+TGG | - | chr4.4:42632125-42632144 | MS.gene61116:CDS | 35.0% | |
| GTCGCAAGGATAATAGAATT+GGG | - | chr4.4:42630974-42630993 | MS.gene61116:CDS | 35.0% | |
| GTTAGAAAAAGAGAGCAAGA+GGG | - | chr4.4:42632411-42632430 | MS.gene61116:CDS | 35.0% | |
| TATCAGAGATGGATGGAATA+TGG | - | chr4.4:42631863-42631882 | MS.gene61116:CDS | 35.0% | |
| TCCCTCAGAATTTGAAAGAA+AGG | - | chr4.4:42631118-42631137 | MS.gene61116:intron | 35.0% | |
| TCGCAAGGATAATAGAATTG+GGG | - | chr4.4:42630975-42630994 | MS.gene61116:CDS | 35.0% | |
| TCTCAGAAGATAACTTCTTC+TGG | + | chr4.4:42631697-42631716 | None:intergenic | 35.0% | |
| TGACTGGAAGTCATATTCTA+TGG | - | chr4.4:42630723-42630742 | MS.gene61116:CDS | 35.0% | |
| TGCTCCAAATTCTCTAATCA+TGG | + | chr4.4:42632097-42632116 | None:intergenic | 35.0% | |
| ! | TAAAGAATTTGGAGCACAGA+TGG | - | chr4.4:42630753-42630772 | MS.gene61116:CDS | 35.0% |
| ! | TCTTTCAAATTCTGAGGGAA+TGG | + | chr4.4:42631117-42631136 | None:intergenic | 35.0% |
| !! | AAGAGTATTGAACGAGAAAG+GGG | - | chr4.4:42632347-42632366 | MS.gene61116:CDS | 35.0% |
| !! | GAAGAGTATTGAACGAGAAA+GGG | - | chr4.4:42632346-42632365 | MS.gene61116:CDS | 35.0% |
| !! | TGACTGGAAGTCATTTTCTA+TGG | - | chr4.4:42632071-42632090 | MS.gene61116:CDS | 35.0% |
| !! | TGTGTTGATTAGAAGCAGTT+AGG | - | chr4.4:42631393-42631412 | MS.gene61116:CDS | 35.0% |
| !!! | CGTTGTTGTGGTTTTATTCT+TGG | - | chr4.4:42632028-42632047 | MS.gene61116:CDS | 35.0% |
| AATGACTTCCAGTCAACATC+TGG | + | chr4.4:42632066-42632085 | None:intergenic | 40.0% | |
| AATTTCACCTTCGTCGGAAA+AGG | - | chr4.4:42630912-42630931 | MS.gene61116:CDS | 40.0% | |
| ACTCATGTGATAAGTTGCAG+TGG | - | chr4.4:42630629-42630648 | MS.gene61116:CDS | 40.0% | |
| AGAGAAATGTCTCTTCTCTG+AGG | - | chr4.4:42631558-42631577 | MS.gene61116:intron | 40.0% | |
| AGTTAGAAAAGGAGAGCAAG+AGG | - | chr4.4:42631062-42631081 | MS.gene61116:intron | 40.0% | |
| ATGACTTCCAGTCAACATCT+GGG | + | chr4.4:42632065-42632084 | None:intergenic | 40.0% | |
| CGCAAGGATAATAGAATTGG+GGG | - | chr4.4:42630976-42630995 | MS.gene61116:CDS | 40.0% | |
| CTCATGTGATAAGTTGCAGT+GGG | - | chr4.4:42630630-42630649 | MS.gene61116:CDS | 40.0% | |
| CTCTCTGCCTAAAACCAATA+AGG | + | chr4.4:42631540-42631559 | None:intergenic | 40.0% | |
| GAAACCAGTGTTATCAGAGA+TGG | - | chr4.4:42631852-42631871 | MS.gene61116:CDS | 40.0% | |
| GTTAGAAAAGGAGAGCAAGA+GGG | - | chr4.4:42631063-42631082 | MS.gene61116:intron | 40.0% | |
| GTTTCTTTAACTCAGCCTTG+AGG | - | chr4.4:42631238-42631257 | MS.gene61116:intron | 40.0% | |
| TCAAACAAAGAAGAGTCGCA+AGG | - | chr4.4:42632308-42632327 | MS.gene61116:CDS | 40.0% | |
| TGAAACTAAGAAGAGTCGCA+AGG | - | chr4.4:42630960-42630979 | MS.gene61116:CDS | 40.0% | |
| TTAGAGAAGACCATCAACGA+TGG | - | chr4.4:42632216-42632235 | MS.gene61116:CDS | 40.0% | |
| ! | AGGATGAACAAGCATTGTTG+TGG | - | chr4.4:42630668-42630687 | MS.gene61116:CDS | 40.0% |
| ! | TAGAGAATTTGGAGCACAGA+TGG | - | chr4.4:42632101-42632120 | MS.gene61116:CDS | 40.0% |
| ! | TATTGATTAGGAGCGGTTAC+AGG | - | chr4.4:42631435-42631454 | MS.gene61116:intron | 40.0% |
| ! | TCAACAAACTTTTCCGACGA+AGG | + | chr4.4:42632270-42632289 | None:intergenic | 40.0% |
| ! | TCTGTCATCTTCCACAGTTT+TGG | + | chr4.4:42630829-42630848 | None:intergenic | 40.0% |
| !! | AGGTATCTGGTGGTATTGAT+AGG | - | chr4.4:42631293-42631312 | MS.gene61116:intron | 40.0% |
| !! | ATGTGGCTTGGTTGTTTGAA+GGG | - | chr4.4:42631163-42631182 | MS.gene61116:intron | 40.0% |
| !! | GGAAGAGTATTGAACGAGAA+AGG | - | chr4.4:42632345-42632364 | MS.gene61116:CDS | 40.0% |
| !! | GGTATCTGGTGGTATTGATA+GGG | - | chr4.4:42631294-42631313 | MS.gene61116:intron | 40.0% |
| !! | TATGTGGCTTGGTTGTTTGA+AGG | - | chr4.4:42631162-42631181 | MS.gene61116:intron | 40.0% |
| !! | TTGACGGTCTTCTCTAAAAC+TGG | + | chr4.4:42630865-42630884 | None:intergenic | 40.0% |
| !!! | TTTTGCTCTGGGATTACAGA+GGG | - | chr4.4:42631584-42631603 | MS.gene61116:intron | 40.0% |
| AAAAAGAGAGCAAGAGGGTG+GGG | - | chr4.4:42632416-42632435 | MS.gene61116:CDS | 45.0% | |
| AAGACCATCAACGATGGAGA+AGG | - | chr4.4:42632222-42632241 | MS.gene61116:CDS | 45.0% | |
| AAGAGAACCCAGATGTTGAC+TGG | - | chr4.4:42632055-42632074 | MS.gene61116:CDS | 45.0% | |
| AGAAAAAGAGAGCAAGAGGG+TGG | - | chr4.4:42632414-42632433 | MS.gene61116:CDS | 45.0% | |
| AGTCAACATCTGGGTTCTCT+TGG | + | chr4.4:42632056-42632075 | None:intergenic | 45.0% | |
| ATGACTTCCAGTCAGCATCT+GGG | + | chr4.4:42630717-42630736 | None:intergenic | 45.0% | |
| CCAGTGTTATCAGAGATGGA+TGG | - | chr4.4:42631856-42631875 | MS.gene61116:CDS | 45.0% | |
| CCATCCATCTCTGATAACAC+TGG | + | chr4.4:42631859-42631878 | None:intergenic | 45.0% | |
| CGGTAATGTTAGGTATCTGG+TGG | - | chr4.4:42631283-42631302 | MS.gene61116:intron | 45.0% | |
| CTGAATTCTCCCTACTGTTG+TGG | + | chr4.4:42631500-42631519 | None:intergenic | 45.0% | |
| CTTGTCAGGGTTCCAACAAT+GGG | - | chr4.4:42631188-42631207 | MS.gene61116:intron | 45.0% | |
| GAAAAAGAGAGCAAGAGGGT+GGG | - | chr4.4:42632415-42632434 | MS.gene61116:CDS | 45.0% | |
| GGTCGGTAATGTTAGGTATC+TGG | - | chr4.4:42631280-42631299 | MS.gene61116:intron | 45.0% | |
| TATCAATTGGTCCGACCTAC+CGG | - | chr4.4:42631819-42631838 | MS.gene61116:intron | 45.0% | |
| TATGACTTCCAGTCAGCATC+TGG | + | chr4.4:42630718-42630737 | None:intergenic | 45.0% | |
| TTAACTCAGCCTTGAGGACA+AGG | - | chr4.4:42631244-42631263 | MS.gene61116:intron | 45.0% | |
| TTAGAGAAGACCGTCAACGA+TGG | - | chr4.4:42630868-42630887 | MS.gene61116:CDS | 45.0% | |
| TTCTAGCGGTCGGTAATGTT+AGG | - | chr4.4:42631273-42631292 | MS.gene61116:intron | 45.0% | |
| ! | AAATTCTGAGGGAATGGCTC+CGG | + | chr4.4:42631111-42631130 | None:intergenic | 45.0% |
| ! | ACTGGTTTCCTTCTCGTATC+CGG | + | chr4.4:42631841-42631860 | None:intergenic | 45.0% |
| ! | ACTTGAATTCTTTTGCCCCC+AGG | + | chr4.4:42631216-42631235 | None:intergenic | 45.0% |
| ! | GAAAAACAGCCTTGTCCTCA+AGG | + | chr4.4:42631256-42631275 | None:intergenic | 45.0% |
| ! | TCAACAACCTTTTCCGACGA+AGG | + | chr4.4:42630922-42630941 | None:intergenic | 45.0% |
| !! | AGGATGAAGAAGCGTTGTTG+TGG | - | chr4.4:42632016-42632035 | MS.gene61116:CDS | 45.0% |
| !! | TGTGGCTTGGTTGTTTGAAG+GGG | - | chr4.4:42631164-42631183 | MS.gene61116:intron | 45.0% |
| !!! | AAGGCTGTTTTTCTAGCGGT+CGG | - | chr4.4:42631263-42631282 | MS.gene61116:intron | 45.0% |
| !!! | CTTTTGCTCTGGGATTACAG+AGG | - | chr4.4:42631583-42631602 | MS.gene61116:intron | 45.0% |
| !!! | GGACAAGGCTGTTTTTCTAG+CGG | - | chr4.4:42631259-42631278 | MS.gene61116:intron | 45.0% |
| !!! | ATTTTAATATATAGTTATTT+AGG | - | chr4.4:42631338-42631357 | MS.gene61116:intron | 5.0% |
| AAAAGGAGAGCAAGAGGGTG+GGG | - | chr4.4:42631068-42631087 | MS.gene61116:intron | 50.0% | |
| AAGACCGTCAACGATGGAGA+AGG | - | chr4.4:42630874-42630893 | MS.gene61116:CDS | 50.0% | |
| AAGAGAACCCAGATGCTGAC+TGG | - | chr4.4:42630707-42630726 | MS.gene61116:CDS | 50.0% | |
| AGAAAAGGAGAGCAAGAGGG+TGG | - | chr4.4:42631066-42631085 | MS.gene61116:intron | 50.0% | |
| AGCCATTTGGCCACAACAGT+AGG | - | chr4.4:42631487-42631506 | MS.gene61116:intron | 50.0% | |
| AGTCAGCATCTGGGTTCTCT+TGG | + | chr4.4:42630708-42630727 | None:intergenic | 50.0% | |
| ATCCTGCTGGATGGATCACA+AGG | - | chr4.4:42630575-42630594 | MS.gene61116:CDS | 50.0% | |
| CCATCAACGATGGAGAAGGA+AGG | - | chr4.4:42632226-42632245 | MS.gene61116:CDS | 50.0% | |
| CCTTCCTTCTCCATCGTTGA+CGG | + | chr4.4:42630881-42630900 | None:intergenic | 50.0% | |
| CCTTCCTTCTCCATCGTTGA+TGG | + | chr4.4:42630881-42630900 | None:intergenic | 50.0% | |
| GAAAAGGAGAGCAAGAGGGT+GGG | - | chr4.4:42631067-42631086 | MS.gene61116:intron | 50.0% | |
| GCCATTTGGCCACAACAGTA+GGG | - | chr4.4:42631488-42631507 | MS.gene61116:intron | 50.0% | |
| GCTTGTCAGGGTTCCAACAA+TGG | - | chr4.4:42631187-42631206 | MS.gene61116:intron | 50.0% | |
| GGTTCCAACAATGGGATCCT+GGG | - | chr4.4:42631196-42631215 | MS.gene61116:intron | 50.0% | |
| GTGGGCTTTCATGAGAATGG+AGG | - | chr4.4:42630648-42630667 | MS.gene61116:CDS | 50.0% | |
| GTTCCAACAATGGGATCCTG+GGG | - | chr4.4:42631197-42631216 | MS.gene61116:intron | 50.0% | |
| GTTTCCTTCTCGTATCCGGT+AGG | + | chr4.4:42631837-42631856 | None:intergenic | 50.0% | |
| TCCCTACTGTTGTGGCCAAA+TGG | + | chr4.4:42631492-42631511 | None:intergenic | 50.0% | |
| TCCTGCTGGATGGATCACAA+GGG | - | chr4.4:42630576-42630595 | MS.gene61116:CDS | 50.0% | |
| TGATTAGGAGCGGTTACAGG+CGG | - | chr4.4:42631438-42631457 | MS.gene61116:intron | 50.0% | |
| TGTTTGAAGGGGGCTTGTCA+GGG | - | chr4.4:42631175-42631194 | MS.gene61116:intron | 50.0% | |
| TTCCAACAATGGGATCCTGG+GGG | - | chr4.4:42631198-42631217 | MS.gene61116:intron | 50.0% | |
| TTGTTTGAAGGGGGCTTGTC+AGG | - | chr4.4:42631174-42631193 | MS.gene61116:intron | 50.0% | |
| TTTACTGGGACAGATCCTGC+TGG | - | chr4.4:42631910-42631929 | MS.gene61116:CDS | 50.0% | |
| ! | GCAGTGGGCTTTCATGAGAA+TGG | - | chr4.4:42630645-42630664 | MS.gene61116:CDS | 50.0% |
| !! | CTCTGAGGAGCTTTTGCTCT+GGG | - | chr4.4:42631573-42631592 | MS.gene61116:intron | 50.0% |
| !! | GTGGCTTGGTTGTTTGAAGG+GGG | - | chr4.4:42631165-42631184 | MS.gene61116:intron | 50.0% |
| !! | TCTCTGAGGAGCTTTTGCTC+TGG | - | chr4.4:42631572-42631591 | MS.gene61116:intron | 50.0% |
| CCGTCAACGATGGAGAAGGA+AGG | - | chr4.4:42630878-42630897 | MS.gene61116:CDS | 55.0% | |
| CCTTCTCGTATCCGGTAGGT+CGG | + | chr4.4:42631833-42631852 | None:intergenic | 55.0% | |
| GGGTTCCAACAATGGGATCC+TGG | - | chr4.4:42631195-42631214 | MS.gene61116:intron | 55.0% | |
| GTGGGCTTTCACGAGTATGG+AGG | - | chr4.4:42631996-42632015 | MS.gene61116:CDS | 55.0% | |
| TTTACTGGGACGGATCCTGC+TGG | - | chr4.4:42630562-42630581 | MS.gene61116:CDS | 55.0% | |
| ! | GCAGTGGGCTTTCACGAGTA+TGG | - | chr4.4:42631993-42632012 | MS.gene61116:CDS | 55.0% |
| AATGGCTCCAGCGGAGGTTG+TGG | + | chr4.4:42632447-42632466 | None:intergenic | 60.0% | |
| AATGGCTCCGGCAGTGGTTC+TGG | + | chr4.4:42631099-42631118 | None:intergenic | 60.0% | |
| ATGGCTCCAGCGGAGGTTGT+GGG | + | chr4.4:42632446-42632465 | None:intergenic | 60.0% | |
| ATGGCTCCGGCAGTGGTTCT+GGG | + | chr4.4:42631098-42631117 | None:intergenic | 60.0% | |
| CCGACCTACCGGATACGAGA+AGG | - | chr4.4:42631830-42631849 | MS.gene61116:intron | 60.0% | |
| CTGGGACAGATCCTGCTGGA+TGG | - | chr4.4:42631914-42631933 | MS.gene61116:CDS | 60.0% | |
| GCCCTTGTGATCCATCCAGC+AGG | + | chr4.4:42630580-42630599 | None:intergenic | 60.0% | |
| GGTCTACCCAGAACCACTGC+CGG | - | chr4.4:42631089-42631108 | MS.gene61116:intron | 60.0% | |
| GGTTTACCCACAACCTCCGC+TGG | - | chr4.4:42632437-42632456 | MS.gene61116:CDS | 60.0% | |
| TGCCCCCAGGATCCCATTGT+TGG | + | chr4.4:42631203-42631222 | None:intergenic | 60.0% | |
| CAGAGGAATGGCTCCAGCGG+AGG | + | chr4.4:42632453-42632472 | None:intergenic | 65.0% | |
| CTGGGACGGATCCTGCTGGA+TGG | - | chr4.4:42630566-42630585 | MS.gene61116:CDS | 65.0% | |
| TGAGGGAATGGCTCCGGCAG+TGG | + | chr4.4:42631105-42631124 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 42630523 | 42632473 | 42630523 | ID=MS.gene61116 |
| chr4.4 | mRNA | 42630523 | 42632473 | 42630523 | ID=MS.gene61116.t1;Parent=MS.gene61116 |
| chr4.4 | exon | 42631836 | 42632473 | 42631836 | ID=MS.gene61116.t1.exon1;Parent=MS.gene61116.t1 |
| chr4.4 | CDS | 42631836 | 42632473 | 42631836 | ID=cds.MS.gene61116.t1;Parent=MS.gene61116.t1 |
| chr4.4 | exon | 42631380 | 42631444 | 42631380 | ID=MS.gene61116.t1.exon2;Parent=MS.gene61116.t1 |
| chr4.4 | CDS | 42631380 | 42631444 | 42631380 | ID=cds.MS.gene61116.t1;Parent=MS.gene61116.t1 |
| chr4.4 | exon | 42630523 | 42631073 | 42630523 | ID=MS.gene61116.t1.exon3;Parent=MS.gene61116.t1 |
| chr4.4 | CDS | 42630523 | 42631073 | 42630523 | ID=cds.MS.gene61116.t1;Parent=MS.gene61116.t1 |
| Gene Sequence |
| Protein sequence |
