Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61379.t1 | XP_024642050.1 | 95.1 | 329 | 16 | 0 | 25 | 353 | 123 | 451 | 1.10E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61379.t1 | I3T6N1 | 95.1 | 329 | 16 | 0 | 25 | 353 | 123 | 451 | 8.0e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050444 | MS.gene61379 | 0.800774 | 1.23E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61379.t1 | MTR_6g088460 | 95.107 | 327 | 16 | 0 | 25 | 351 | 123 | 449 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61379.t1 | AT5G19540 | 70.393 | 331 | 96 | 2 | 25 | 353 | 128 | 458 | 4.88e-174 | 492 |
| MS.gene61379.t1 | AT5G19540 | 70.393 | 331 | 96 | 2 | 25 | 353 | 128 | 458 | 4.88e-174 | 492 |
Find 88 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGATTGCCATACTTTA+TGG | 0.078842 | 6.3:-80398517 | MS.gene61379:CDS |
| CTTGACAACGCCTCTATTTC+CGG | 0.201374 | 6.3:+80399257 | None:intergenic |
| TGGCGGTGGATCTGTGGTTT+TGG | 0.230954 | 6.3:-80398288 | MS.gene61379:CDS |
| GGTAATTGAGACAATCTAAT+TGG | 0.268697 | 6.3:+80399659 | None:intergenic |
| AAGACAGTGGCCAGGGCTTC+AGG | 0.273860 | 6.3:-80398364 | MS.gene61379:CDS |
| GAATTTGAGCCATCTGTCTT+TGG | 0.275727 | 6.3:+80399695 | None:intergenic |
| AACACAAAACCTGGAGTAAT+TGG | 0.285630 | 6.3:+80399593 | None:intergenic |
| CGTAGGACTCAAGCTCCTTC+TGG | 0.285730 | 6.3:+80399836 | None:intergenic |
| TCAATTACCAGTCTGAAAAT+TGG | 0.290529 | 6.3:-80399645 | MS.gene61379:CDS |
| AAACGCTTCCGATGAGAAAA+AGG | 0.312911 | 6.3:+80399312 | None:intergenic |
| TCTTCGGTACCACGGTGAAT+TGG | 0.317020 | 6.3:-80398258 | MS.gene61379:CDS |
| ATAAGATTGCCATACTTTAT+GGG | 0.348638 | 6.3:-80398516 | MS.gene61379:CDS |
| CTCCATGGATCAAGATCTTC+CGG | 0.359668 | 6.3:+80399383 | None:intergenic |
| CATTGAGAATAATGACTTCT+CGG | 0.378847 | 6.3:-80400230 | MS.gene61379:CDS |
| CGATTGTGTCCTTTATGAAA+TGG | 0.381202 | 6.3:-80399815 | MS.gene61379:CDS |
| CTTCGGTACCACGGTGAATT+GGG | 0.392853 | 6.3:-80398257 | MS.gene61379:CDS |
| TTCTCGGTCAGGGTTCTGAT+TGG | 0.400383 | 6.3:-80400214 | MS.gene61379:CDS |
| CTCAATCTCCTTCCGAGATC+CGG | 0.412651 | 6.3:+80398481 | None:intergenic |
| GTACTTCCTATGCCGCTTGT+TGG | 0.414173 | 6.3:-80399335 | MS.gene61379:CDS |
| TGCTAGCTACCATTTCATAA+AGG | 0.415690 | 6.3:+80399806 | None:intergenic |
| AATGTTGCAGCCTTCGATTC+CGG | 0.423808 | 6.3:-80399402 | MS.gene61379:CDS |
| CGTTTCTGAAGACAGTGGCC+AGG | 0.441159 | 6.3:-80398372 | MS.gene61379:CDS |
| GAGGAGAAATCTGTTATAAT+CGG | 0.448667 | 6.3:-80398595 | MS.gene61379:CDS |
| GGTGGCCACATGCCGGATCT+CGG | 0.452902 | 6.3:-80398493 | MS.gene61379:CDS |
| TCGGTCAGGGTTCTGATTGG+TGG | 0.458176 | 6.3:-80400211 | MS.gene61379:CDS |
| ATGTTACCACAGAAATTCTT+CGG | 0.470066 | 6.3:-80398228 | MS.gene61379:CDS |
| AGAATAATGACTTCTCGGTC+AGG | 0.471487 | 6.3:-80400225 | MS.gene61379:CDS |
| GGGTAACTGCTTGGTCCATA+AGG | 0.473573 | 6.3:-80398423 | MS.gene61379:CDS |
| AAGTCCAGCATCAGAATATC+CGG | 0.478469 | 6.3:-80399276 | MS.gene61379:CDS |
| CGGATCTCGGAAGGAGATTG+AGG | 0.480710 | 6.3:-80398480 | MS.gene61379:CDS |
| CTGCTTGGTCCATAAGGAAA+AGG | 0.480923 | 6.3:-80398417 | MS.gene61379:CDS |
| CGGAAGCGTTTGTGCAAATG+TGG | 0.481614 | 6.3:-80399300 | MS.gene61379:CDS |
| ATTTCCGGATATTCTGATGC+TGG | 0.491392 | 6.3:+80399272 | None:intergenic |
| TGATGTAAGTGCTGCTATGA+AGG | 0.492495 | 6.3:-80399231 | MS.gene61379:CDS |
| TGAGACCTTCCAATTACTCC+AGG | 0.492747 | 6.3:-80399602 | MS.gene61379:intron |
| AAAAGGCCAACAAGCGGCAT+AGG | 0.495123 | 6.3:+80399329 | None:intergenic |
| CTGGCCACTGTCTTCAGAAA+CGG | 0.497502 | 6.3:+80398373 | None:intergenic |
| TTATGAAATGGTAGCTAGCA+AGG | 0.507890 | 6.3:-80399803 | MS.gene61379:CDS |
| GAGTTCGATTTAGTCCCGTC+TGG | 0.510649 | 6.3:-80398454 | MS.gene61379:CDS |
| TAAGATTGCCATACTTTATG+GGG | 0.513897 | 6.3:-80398515 | MS.gene61379:CDS |
| CAACGGCCAACCTGAAGCCC+TGG | 0.516595 | 6.3:+80398354 | None:intergenic |
| ATCAGAATATCCGGAAATAG+AGG | 0.519580 | 6.3:-80399267 | MS.gene61379:CDS |
| GTGTGGAGTGGGTAACTGCT+TGG | 0.528681 | 6.3:-80398432 | MS.gene61379:CDS |
| GAATAATGACTTCTCGGTCA+GGG | 0.541924 | 6.3:-80400224 | MS.gene61379:CDS |
| GTTTCTGAAGACAGTGGCCA+GGG | 0.542598 | 6.3:-80398371 | MS.gene61379:CDS |
| CAATCTTGGCGGTGGATCTG+TGG | 0.546535 | 6.3:-80398294 | MS.gene61379:CDS |
| CGGAAATAGAGGCGTTGTCA+AGG | 0.546770 | 6.3:-80399256 | MS.gene61379:CDS |
| GTAAAGCTTGACACAAAATA+CGG | 0.549495 | 6.3:-80398626 | MS.gene61379:intron |
| ACAGAAATTCTTCGGTATGT+TGG | 0.549627 | 6.3:-80398220 | MS.gene61379:CDS |
| AGAGAATATGAGAAACCCTA+TGG | 0.555242 | 6.3:-80399773 | MS.gene61379:CDS |
| CGATTTAGTCCCGTCTGGTG+TGG | 0.555780 | 6.3:-80398449 | MS.gene61379:CDS |
| TTCCGGAAGATCTTGATCCA+TGG | 0.559662 | 6.3:-80399385 | MS.gene61379:CDS |
| TAGTCCCGTCTGGTGTGGAG+TGG | 0.563205 | 6.3:-80398444 | MS.gene61379:CDS |
| GTTGAACCGTTATCAGACAT+TGG | 0.564903 | 6.3:-80398335 | MS.gene61379:CDS |
| GCCACATGCCGGATCTCGGA+AGG | 0.567733 | 6.3:-80398489 | MS.gene61379:CDS |
| ACAAAATACGGCAGATGTGG+AGG | 0.568405 | 6.3:-80398614 | MS.gene61379:CDS |
| CATAAAAGCTTGGATCTCCA+TGG | 0.568942 | 6.3:+80399368 | None:intergenic |
| GGATCTCGGAAGGAGATTGA+GGG | 0.569864 | 6.3:-80398479 | MS.gene61379:CDS |
| GCAAAGCCAATGTCTGATAA+CGG | 0.573019 | 6.3:+80398329 | None:intergenic |
| CCTCAAAAGAGCAATGGACA+AGG | 0.574667 | 6.3:-80398545 | MS.gene61379:CDS |
| ACTTCACTCAACTTCTTCAG+TGG | 0.574748 | 6.3:+80400178 | None:intergenic |
| AGGACTCAAGCTCCTTCTGG+AGG | 0.576534 | 6.3:+80399839 | None:intergenic |
| TCAAGATCTTCCGGAATCGA+AGG | 0.584753 | 6.3:+80399392 | None:intergenic |
| CGAGAACCTCAAAAGAGCAA+TGG | 0.588813 | 6.3:-80398551 | MS.gene61379:CDS |
| AGTCCCGTCTGGTGTGGAGT+GGG | 0.591895 | 6.3:-80398443 | MS.gene61379:CDS |
| GACACAAAATACGGCAGATG+TGG | 0.592912 | 6.3:-80398617 | MS.gene61379:CDS |
| AATGTCTGATAACGGTTCAA+CGG | 0.600103 | 6.3:+80398337 | None:intergenic |
| CGGATGTTAGTCTCTTTGCA+AGG | 0.600216 | 6.3:+80399204 | None:intergenic |
| ACGTGAAGCCCATAAAAGCT+TGG | 0.603332 | 6.3:+80399358 | None:intergenic |
| TATGACTCTTAGATCTACAA+AGG | 0.610478 | 6.3:-80399426 | MS.gene61379:CDS |
| TCCTTCCGAGATCCGGCATG+TGG | 0.610617 | 6.3:+80398488 | None:intergenic |
| TTAAAAGGATCACAAACTAG+AGG | 0.613345 | 6.3:-80399739 | MS.gene61379:CDS |
| GACAGATGGCTCAAATTCTG+AGG | 0.616056 | 6.3:-80399690 | MS.gene61379:CDS |
| GGAGCTATTCTTCGGTACCA+CGG | 0.617266 | 6.3:-80398266 | MS.gene61379:CDS |
| TGGATGCATCCAAAGACAGA+TGG | 0.619679 | 6.3:-80399704 | MS.gene61379:CDS |
| TTACCCACTCCACACCAGAC+GGG | 0.622816 | 6.3:+80398440 | None:intergenic |
| CAGTGGCCAGGGCTTCAGGT+TGG | 0.625647 | 6.3:-80398360 | MS.gene61379:CDS |
| CAAAACCTGGAGTAATTGGA+AGG | 0.627573 | 6.3:+80399597 | None:intergenic |
| GGACTCAAGCTCCTTCTGGA+GGG | 0.634976 | 6.3:+80399840 | None:intergenic |
| GTTACCCACTCCACACCAGA+CGG | 0.640256 | 6.3:+80398439 | None:intergenic |
| AACATACCGAAGAATTTCTG+TGG | 0.646117 | 6.3:+80398222 | None:intergenic |
| GGAAGCGTTTGTGCAAATGT+GGG | 0.646979 | 6.3:-80399299 | MS.gene61379:CDS |
| AAGATTGCCATACTTTATGG+GGG | 0.660170 | 6.3:-80398514 | MS.gene61379:CDS |
| CTCAAAAGAGCAATGGACAA+GGG | 0.666275 | 6.3:-80398544 | MS.gene61379:CDS |
| TCTCGGAAGGAGATTGAGGG+AGG | 0.670087 | 6.3:-80398476 | MS.gene61379:CDS |
| ACTTCCGTTTCTGAAGACAG+TGG | 0.695232 | 6.3:-80398377 | MS.gene61379:CDS |
| TTCATAAAGGACACAATCGT+AGG | 0.698872 | 6.3:+80399819 | None:intergenic |
| ATCAGAGACCCAATTCACCG+TGG | 0.790349 | 6.3:+80398249 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTCCTATTAGTTTAT+AGG | - | chr6.3:80399552-80399571 | MS.gene61379:intron | 20.0% |
| ! | AATAAGATTGCCATACTTTA+TGG | - | chr6.3:80399940-80399959 | MS.gene61379:intron | 25.0% |
| ! | AATACCTGCTCATAAAAATT+AGG | + | chr6.3:80398591-80398610 | None:intergenic | 25.0% |
| ! | ATAAGATTGCCATACTTTAT+GGG | - | chr6.3:80399941-80399960 | MS.gene61379:intron | 25.0% |
| ! | ATGGCTAAAAAAAGGTTAAA+AGG | - | chr6.3:80398703-80398722 | MS.gene61379:intron | 25.0% |
| ! | GAGTTTGTATAAATTTGTAC+TGG | + | chr6.3:80399301-80399320 | None:intergenic | 25.0% |
| ! | TTTATCATCAATACTCAAGT+TGG | + | chr6.3:80399802-80399821 | None:intergenic | 25.0% |
| !! | TTGCTTGCTGAAATAAAAAA+GGG | + | chr6.3:80398980-80398999 | None:intergenic | 25.0% |
| !! | TTTGCTTGCTGAAATAAAAA+AGG | + | chr6.3:80398981-80399000 | None:intergenic | 25.0% |
| !!! | ACTAGAGGTTTTAACATTAT+TGG | - | chr6.3:80398733-80398752 | MS.gene61379:intron | 25.0% |
| !!! | TTAACCTTTTTTTAGCCATA+GGG | + | chr6.3:80398702-80398721 | None:intergenic | 25.0% |
| !!! | TTTAACCTTTTTTTAGCCAT+AGG | + | chr6.3:80398703-80398722 | None:intergenic | 25.0% |
| !!! | TTTTTATTTCAGCAAGCAAA+AGG | - | chr6.3:80398981-80399000 | MS.gene61379:intron | 25.0% |
| AAAATTAGCAACACAAAACC+TGG | + | chr6.3:80398876-80398895 | None:intergenic | 30.0% | |
| AAGTGAGACTTAAATGTCAA+AGG | - | chr6.3:80398400-80398419 | MS.gene61379:CDS | 30.0% | |
| ACATTTAAGTCTCACTTCTT+AGG | + | chr6.3:80398397-80398416 | None:intergenic | 30.0% | |
| AGTGAGACTTAAATGTCAAA+GGG | - | chr6.3:80398401-80398420 | MS.gene61379:CDS | 30.0% | |
| ATGTTACCACAGAAATTCTT+CGG | - | chr6.3:80400229-80400248 | MS.gene61379:CDS | 30.0% | |
| CATTGAGAATAATGACTTCT+CGG | - | chr6.3:80398227-80398246 | MS.gene61379:CDS | 30.0% | |
| GAGGAGAAATCTGTTATAAT+CGG | - | chr6.3:80399862-80399881 | MS.gene61379:intron | 30.0% | |
| GGTAATTGAGACAATCTAAT+TGG | + | chr6.3:80398801-80398820 | None:intergenic | 30.0% | |
| GTAAAGCTTGACACAAAATA+CGG | - | chr6.3:80399831-80399850 | MS.gene61379:CDS | 30.0% | |
| TAAAAGTTAATACTGCTTCG+AGG | + | chr6.3:80398557-80398576 | None:intergenic | 30.0% | |
| TAAGATTGCCATACTTTATG+GGG | - | chr6.3:80399942-80399961 | MS.gene61379:intron | 30.0% | |
| TATGACTCTTAGATCTACAA+AGG | - | chr6.3:80399031-80399050 | MS.gene61379:intron | 30.0% | |
| TCAATTACCAGTCTGAAAAT+TGG | - | chr6.3:80398812-80398831 | MS.gene61379:intron | 30.0% | |
| TTAAAAGGATCACAAACTAG+AGG | - | chr6.3:80398718-80398737 | MS.gene61379:intron | 30.0% | |
| ! | ATCAAGTTTCCTTTTCCTTA+TGG | + | chr6.3:80400052-80400071 | None:intergenic | 30.0% |
| ! | TGATCCTAATTTTTATGAGC+AGG | - | chr6.3:80398584-80398603 | MS.gene61379:CDS | 30.0% |
| ! | TTTTATGAGCAGGTATTTTC+TGG | - | chr6.3:80398594-80398613 | MS.gene61379:CDS | 30.0% |
| !!! | TTGTCATTTTAGTGCATGTT+TGG | - | chr6.3:80399362-80399381 | MS.gene61379:CDS | 30.0% |
| AACACAAAACCTGGAGTAAT+TGG | + | chr6.3:80398867-80398886 | None:intergenic | 35.0% | |
| AACATACCGAAGAATTTCTG+TGG | + | chr6.3:80400238-80400257 | None:intergenic | 35.0% | |
| AAGATTGCCATACTTTATGG+GGG | - | chr6.3:80399943-80399962 | MS.gene61379:intron | 35.0% | |
| ACAGAAATTCTTCGGTATGT+TGG | - | chr6.3:80400237-80400256 | MS.gene61379:CDS | 35.0% | |
| AGAGAATATGAGAAACCCTA+TGG | - | chr6.3:80398684-80398703 | MS.gene61379:intron | 35.0% | |
| AGATCATGCCAAAATCATTG+TGG | + | chr6.3:80399420-80399439 | None:intergenic | 35.0% | |
| AGTTATGAGCATAAGCCTAA+AGG | + | chr6.3:80398467-80398486 | None:intergenic | 35.0% | |
| ATCAGAATATCCGGAAATAG+AGG | - | chr6.3:80399190-80399209 | MS.gene61379:intron | 35.0% | |
| CATTGAGTGAAATTTGTCGT+AGG | - | chr6.3:80398317-80398336 | MS.gene61379:CDS | 35.0% | |
| CGATTGTGTCCTTTATGAAA+TGG | - | chr6.3:80398642-80398661 | MS.gene61379:intron | 35.0% | |
| GAAACCCTATGGCTAAAAAA+AGG | - | chr6.3:80398695-80398714 | MS.gene61379:intron | 35.0% | |
| GTTATGAGCATAAGCCTAAA+GGG | + | chr6.3:80398466-80398485 | None:intergenic | 35.0% | |
| TGAGTTTGACGAAATCATGT+CGG | + | chr6.3:80399460-80399479 | None:intergenic | 35.0% | |
| TGCTAGCTACCATTTCATAA+AGG | + | chr6.3:80398654-80398673 | None:intergenic | 35.0% | |
| TTATGAAATGGTAGCTAGCA+AGG | - | chr6.3:80398654-80398673 | MS.gene61379:intron | 35.0% | |
| TTCATAAAGGACACAATCGT+AGG | + | chr6.3:80398641-80398660 | None:intergenic | 35.0% | |
| ! | ATGGAGATCCAAGCTTTTAT+GGG | - | chr6.3:80399091-80399110 | MS.gene61379:intron | 35.0% |
| !! | AATGTCTGATAACGGTTCAA+CGG | + | chr6.3:80400123-80400142 | None:intergenic | 35.0% |
| !! | TTCAACCAAGTTTTATGTCC+TGG | + | chr6.3:80399720-80399739 | None:intergenic | 35.0% |
| !!! | AGATCCCACTGTTTTAGAAA+TGG | + | chr6.3:80399619-80399638 | None:intergenic | 35.0% |
| !!! | GATCCCACTGTTTTAGAAAT+GGG | + | chr6.3:80399618-80399637 | None:intergenic | 35.0% |
| AAACGCTTCCGATGAGAAAA+AGG | + | chr6.3:80399148-80399167 | None:intergenic | 40.0% | |
| AAGTCCAGCATCAGAATATC+CGG | - | chr6.3:80399181-80399200 | MS.gene61379:intron | 40.0% | |
| ACTTCACTCAACTTCTTCAG+TGG | + | chr6.3:80398282-80398301 | None:intergenic | 40.0% | |
| AGAATAATGACTTCTCGGTC+AGG | - | chr6.3:80398232-80398251 | MS.gene61379:CDS | 40.0% | |
| ATACAAACTCTTGCTCCTGT+AGG | - | chr6.3:80399311-80399330 | MS.gene61379:CDS | 40.0% | |
| ATGAGAAAAAGGCCAACAAG+CGG | + | chr6.3:80399137-80399156 | None:intergenic | 40.0% | |
| ATTTCCGGATATTCTGATGC+TGG | + | chr6.3:80399188-80399207 | None:intergenic | 40.0% | |
| CAAAACCTGGAGTAATTGGA+AGG | + | chr6.3:80398863-80398882 | None:intergenic | 40.0% | |
| CAAAGGGTTCTTTCACCTAA+TGG | - | chr6.3:80398417-80398436 | MS.gene61379:CDS | 40.0% | |
| CAAATTGAGAGGGACTTACT+CGG | + | chr6.3:80399276-80399295 | None:intergenic | 40.0% | |
| CATAAAAGCTTGGATCTCCA+TGG | + | chr6.3:80399092-80399111 | None:intergenic | 40.0% | |
| CTCAAAAGAGCAATGGACAA+GGG | - | chr6.3:80399913-80399932 | MS.gene61379:intron | 40.0% | |
| GAAGAAGTTGAGTGAAGTGT+CGG | - | chr6.3:80398284-80398303 | MS.gene61379:CDS | 40.0% | |
| GAATAATGACTTCTCGGTCA+GGG | - | chr6.3:80398233-80398252 | MS.gene61379:CDS | 40.0% | |
| GAATTTGAGCCATCTGTCTT+TGG | + | chr6.3:80398765-80398784 | None:intergenic | 40.0% | |
| GCAAAGCCAATGTCTGATAA+CGG | + | chr6.3:80400131-80400150 | None:intergenic | 40.0% | |
| GGAGGGACCTATAAACTAAT+AGG | + | chr6.3:80399562-80399581 | None:intergenic | 40.0% | |
| GTAGTCCAGGACATAAAACT+TGG | - | chr6.3:80399712-80399731 | MS.gene61379:CDS | 40.0% | |
| GTTGAACCGTTATCAGACAT+TGG | - | chr6.3:80400122-80400141 | MS.gene61379:intron | 40.0% | |
| TACAAACTCTTGCTCCTGTA+GGG | - | chr6.3:80399312-80399331 | MS.gene61379:CDS | 40.0% | |
| TCCTGGACTACACTTTCAAA+AGG | + | chr6.3:80399703-80399722 | None:intergenic | 40.0% | |
| TCGCAAAACACTAGTCCATT+AGG | + | chr6.3:80398435-80398454 | None:intergenic | 40.0% | |
| TGTACTGGACCAAATTGAGA+GGG | + | chr6.3:80399286-80399305 | None:intergenic | 40.0% | |
| TTAGTGCATGTTTGGATCCA+TGG | - | chr6.3:80399370-80399389 | MS.gene61379:CDS | 40.0% | |
| TTGTACTGGACCAAATTGAG+AGG | + | chr6.3:80399287-80399306 | None:intergenic | 40.0% | |
| ! | ACTGTGTGCCACAATGATTT+TGG | - | chr6.3:80399409-80399428 | MS.gene61379:CDS | 40.0% |
| ! | CATCTTTTCGTCAATCTTGG+CGG | - | chr6.3:80400152-80400171 | MS.gene61379:intron | 40.0% |
| ! | CATGGAGATCCAAGCTTTTA+TGG | - | chr6.3:80399090-80399109 | MS.gene61379:intron | 40.0% |
| ! | CATGTTGCCAATTTTCAGAC+TGG | + | chr6.3:80398822-80398841 | None:intergenic | 40.0% |
| ! | GCTCATCTTTTCGTCAATCT+TGG | - | chr6.3:80400149-80400168 | MS.gene61379:intron | 40.0% |
| ! | TGATGTAAGTGCTGCTATGA+AGG | - | chr6.3:80399226-80399245 | MS.gene61379:CDS | 40.0% |
| !! | TCCTTTTGAAAGTGTAGTCC+AGG | - | chr6.3:80399699-80399718 | MS.gene61379:CDS | 40.0% |
| !!! | CTTGTTGGCCTTTTTCTCAT+CGG | - | chr6.3:80399137-80399156 | MS.gene61379:intron | 40.0% |
| !!! | TGGTTTTGGGAGCTATTCTT+CGG | - | chr6.3:80400183-80400202 | MS.gene61379:intron | 40.0% |
| AATGTTGCAGCCTTCGATTC+CGG | - | chr6.3:80399055-80399074 | MS.gene61379:intron | 45.0% | |
| ACAAAATACGGCAGATGTGG+AGG | - | chr6.3:80399843-80399862 | MS.gene61379:CDS | 45.0% | |
| ACGTGAAGCCCATAAAAGCT+TGG | + | chr6.3:80399102-80399121 | None:intergenic | 45.0% | |
| AGGTCCCTCCAGATTTATGT+GGG | - | chr6.3:80399572-80399591 | MS.gene61379:intron | 45.0% | |
| ATTGCCATACTTTATGGGGG+TGG | - | chr6.3:80399946-80399965 | MS.gene61379:intron | 45.0% | |
| CACAAGTGCTCATTGATGCA+TGG | - | chr6.3:80398498-80398517 | MS.gene61379:CDS | 45.0% | |
| CCTCAAAAGAGCAATGGACA+AGG | - | chr6.3:80399912-80399931 | MS.gene61379:intron | 45.0% | |
| CGAGAACCTCAAAAGAGCAA+TGG | - | chr6.3:80399906-80399925 | MS.gene61379:intron | 45.0% | |
| CGAGTAAGTCCCTCTCAATT+TGG | - | chr6.3:80399274-80399293 | MS.gene61379:CDS | 45.0% | |
| CTCCATGGATCAAGATCTTC+CGG | + | chr6.3:80399077-80399096 | None:intergenic | 45.0% | |
| CTGCTTGGTCCATAAGGAAA+AGG | - | chr6.3:80400040-80400059 | MS.gene61379:intron | 45.0% | |
| CTTGACAACGCCTCTATTTC+CGG | + | chr6.3:80399203-80399222 | None:intergenic | 45.0% | |
| GACACAAAATACGGCAGATG+TGG | - | chr6.3:80399840-80399859 | MS.gene61379:CDS | 45.0% | |
| GACAGATGGCTCAAATTCTG+AGG | - | chr6.3:80398767-80398786 | MS.gene61379:intron | 45.0% | |
| GTTTGGATCCATGGTGAGTT+TGG | - | chr6.3:80399379-80399398 | MS.gene61379:CDS | 45.0% | |
| TAGGTCCCTCCAGATTTATG+TGG | - | chr6.3:80399571-80399590 | MS.gene61379:intron | 45.0% | |
| TCAAGATCTTCCGGAATCGA+AGG | + | chr6.3:80399068-80399087 | None:intergenic | 45.0% | |
| TGAGACCTTCCAATTACTCC+AGG | - | chr6.3:80398855-80398874 | MS.gene61379:intron | 45.0% | |
| TGATTCAGCCAAACTCACCA+TGG | + | chr6.3:80399390-80399409 | None:intergenic | 45.0% | |
| TGGATGCATCCAAAGACAGA+TGG | - | chr6.3:80398753-80398772 | MS.gene61379:intron | 45.0% | |
| TTCCGGAAGATCTTGATCCA+TGG | - | chr6.3:80399072-80399091 | MS.gene61379:intron | 45.0% | |
| ! | ACTTCCGTTTCTGAAGACAG+TGG | - | chr6.3:80400080-80400099 | MS.gene61379:intron | 45.0% |
| ! | CCTTGTCCATTGCTCTTTTG+AGG | + | chr6.3:80399915-80399934 | None:intergenic | 45.0% |
| ! | CGGATGTTAGTCTCTTTGCA+AGG | + | chr6.3:80399256-80399275 | None:intergenic | 45.0% |
| ! | TGGGCCCTGCATAATTTTGT+GGG | - | chr6.3:80399591-80399610 | MS.gene61379:intron | 45.0% |
| !! | GGAAGCGTTTGTGCAAATGT+GGG | - | chr6.3:80399158-80399177 | MS.gene61379:intron | 45.0% |
| !! | GGGCCCATTTCTAAAACAGT+GGG | - | chr6.3:80399612-80399631 | MS.gene61379:CDS | 45.0% |
| AAAAGGCCAACAAGCGGCAT+AGG | + | chr6.3:80399131-80399150 | None:intergenic | 50.0% | |
| AGGGCCCACATAAATCTGGA+GGG | + | chr6.3:80399579-80399598 | None:intergenic | 50.0% | |
| ATCAGAGACCCAATTCACCG+TGG | + | chr6.3:80400211-80400230 | None:intergenic | 50.0% | |
| ATGCAGGGCCCACATAAATC+TGG | + | chr6.3:80399583-80399602 | None:intergenic | 50.0% | |
| CTCAATCTCCTTCCGAGATC+CGG | + | chr6.3:80399979-80399998 | None:intergenic | 50.0% | |
| CTCGTAGCTCAAAACCCTAC+AGG | + | chr6.3:80399329-80399348 | None:intergenic | 50.0% | |
| CTGGCCACTGTCTTCAGAAA+CGG | + | chr6.3:80400087-80400106 | None:intergenic | 50.0% | |
| CTTCGGTACCACGGTGAATT+GGG | - | chr6.3:80400200-80400219 | MS.gene61379:CDS | 50.0% | |
| GAGTTCGATTTAGTCCCGTC+TGG | - | chr6.3:80400003-80400022 | MS.gene61379:intron | 50.0% | |
| GGAGCTATTCTTCGGTACCA+CGG | - | chr6.3:80400191-80400210 | MS.gene61379:CDS | 50.0% | |
| GGATCTCGGAAGGAGATTGA+GGG | - | chr6.3:80399978-80399997 | MS.gene61379:intron | 50.0% | |
| GGGCCCCACAAAATTATGCA+GGG | + | chr6.3:80399598-80399617 | None:intergenic | 50.0% | |
| GGGTAACTGCTTGGTCCATA+AGG | - | chr6.3:80400034-80400053 | MS.gene61379:intron | 50.0% | |
| TCTTCGGTACCACGGTGAAT+TGG | - | chr6.3:80400199-80400218 | MS.gene61379:CDS | 50.0% | |
| TGGGCCCCACAAAATTATGC+AGG | + | chr6.3:80399599-80399618 | None:intergenic | 50.0% | |
| TTGCGACGAGCTTTCCCTTT+AGG | - | chr6.3:80398449-80398468 | MS.gene61379:CDS | 50.0% | |
| ! | ATCCTCGAATGATGGTGCAG+TGG | - | chr6.3:80398345-80398364 | MS.gene61379:CDS | 50.0% |
| ! | CTTTTCGTCAATCTTGGCGG+TGG | - | chr6.3:80400155-80400174 | MS.gene61379:intron | 50.0% |
| ! | GGGCCCTGCATAATTTTGTG+GGG | - | chr6.3:80399592-80399611 | MS.gene61379:intron | 50.0% |
| ! | GTACTTCCTATGCCGCTTGT+TGG | - | chr6.3:80399122-80399141 | MS.gene61379:intron | 50.0% |
| ! | GTGGGCCCTGCATAATTTTG+TGG | - | chr6.3:80399590-80399609 | MS.gene61379:intron | 50.0% |
| ! | GTTTCTGAAGACAGTGGCCA+GGG | - | chr6.3:80400086-80400105 | MS.gene61379:intron | 50.0% |
| ! | TTCTCGGTCAGGGTTCTGAT+TGG | - | chr6.3:80398243-80398262 | MS.gene61379:CDS | 50.0% |
| !! | AGGCATCGATCCTCGAATGA+TGG | - | chr6.3:80398337-80398356 | MS.gene61379:CDS | 50.0% |
| !! | CGGAAATAGAGGCGTTGTCA+AGG | - | chr6.3:80399201-80399220 | MS.gene61379:intron | 50.0% |
| !! | CGGAAGCGTTTGTGCAAATG+TGG | - | chr6.3:80399157-80399176 | MS.gene61379:intron | 50.0% |
| !! | GGGGCCCATTTCTAAAACAG+TGG | - | chr6.3:80399611-80399630 | MS.gene61379:CDS | 50.0% |
| !! | GTATTTTCTGGCCCTCCAGA+AGG | - | chr6.3:80398606-80398625 | MS.gene61379:CDS | 50.0% |
| AGGACTCAAGCTCCTTCTGG+AGG | + | chr6.3:80398621-80398640 | None:intergenic | 55.0% | |
| CAATCTTGGCGGTGGATCTG+TGG | - | chr6.3:80400163-80400182 | MS.gene61379:intron | 55.0% | |
| CACCACTGCACCATCATTCG+AGG | + | chr6.3:80398350-80398369 | None:intergenic | 55.0% | |
| CAGGGCCCACATAAATCTGG+AGG | + | chr6.3:80399580-80399599 | None:intergenic | 55.0% | |
| CGATTTAGTCCCGTCTGGTG+TGG | - | chr6.3:80400008-80400027 | MS.gene61379:intron | 55.0% | |
| CGGATCTCGGAAGGAGATTG+AGG | - | chr6.3:80399977-80399996 | MS.gene61379:intron | 55.0% | |
| CGTAGGACTCAAGCTCCTTC+TGG | + | chr6.3:80398624-80398643 | None:intergenic | 55.0% | |
| GGACTCAAGCTCCTTCTGGA+GGG | + | chr6.3:80398620-80398639 | None:intergenic | 55.0% | |
| GTGGCCACCCCCATAAAGTA+TGG | + | chr6.3:80399953-80399972 | None:intergenic | 55.0% | |
| GTGGTGTGAGTCTCACACTG+TGG | - | chr6.3:80398364-80398383 | MS.gene61379:CDS | 55.0% | |
| GTGTGGAGTGGGTAACTGCT+TGG | - | chr6.3:80400025-80400044 | MS.gene61379:intron | 55.0% | |
| GTTACCCACTCCACACCAGA+CGG | + | chr6.3:80400021-80400040 | None:intergenic | 55.0% | |
| TCTCGGAAGGAGATTGAGGG+AGG | - | chr6.3:80399981-80400000 | MS.gene61379:intron | 55.0% | |
| TTACCCACTCCACACCAGAC+GGG | + | chr6.3:80400020-80400039 | None:intergenic | 55.0% | |
| ! | CGTTTCTGAAGACAGTGGCC+AGG | - | chr6.3:80400085-80400104 | MS.gene61379:intron | 55.0% |
| ! | GGCGGTGGATCTGTGGTTTT+GGG | - | chr6.3:80400170-80400189 | MS.gene61379:intron | 55.0% |
| ! | TCGGTCAGGGTTCTGATTGG+TGG | - | chr6.3:80398246-80398265 | MS.gene61379:CDS | 55.0% |
| ! | TGGCGGTGGATCTGTGGTTT+TGG | - | chr6.3:80400169-80400188 | MS.gene61379:intron | 55.0% |
| AAGACAGTGGCCAGGGCTTC+AGG | - | chr6.3:80400093-80400112 | MS.gene61379:intron | 60.0% | |
| AGTCCCGTCTGGTGTGGAGT+GGG | - | chr6.3:80400014-80400033 | MS.gene61379:intron | 60.0% | |
| TAGTCCCGTCTGGTGTGGAG+TGG | - | chr6.3:80400013-80400032 | MS.gene61379:intron | 60.0% | |
| TCCTTCCGAGATCCGGCATG+TGG | + | chr6.3:80399972-80399991 | None:intergenic | 60.0% | |
| TTATGGGGGTGGCCACATGC+CGG | - | chr6.3:80399957-80399976 | MS.gene61379:intron | 60.0% | |
| CAACGGCCAACCTGAAGCCC+TGG | + | chr6.3:80400106-80400125 | None:intergenic | 65.0% | |
| CAGTGGCCAGGGCTTCAGGT+TGG | - | chr6.3:80400097-80400116 | MS.gene61379:intron | 65.0% | |
| GCCACATGCCGGATCTCGGA+AGG | - | chr6.3:80399968-80399987 | MS.gene61379:intron | 65.0% | |
| GGTGGCCACATGCCGGATCT+CGG | - | chr6.3:80399964-80399983 | MS.gene61379:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 80398213 | 80400266 | 80398213 | ID=MS.gene61379 |
| chr6.3 | mRNA | 80398213 | 80400266 | 80398213 | ID=MS.gene61379.t1;Parent=MS.gene61379 |
| chr6.3 | exon | 80400190 | 80400266 | 80400190 | ID=MS.gene61379.t1.exon1;Parent=MS.gene61379.t1 |
| chr6.3 | CDS | 80400190 | 80400266 | 80400190 | ID=cds.MS.gene61379.t1;Parent=MS.gene61379.t1 |
| chr6.3 | exon | 80399603 | 80399873 | 80399603 | ID=MS.gene61379.t1.exon2;Parent=MS.gene61379.t1 |
| chr6.3 | CDS | 80399603 | 80399873 | 80399603 | ID=cds.MS.gene61379.t1;Parent=MS.gene61379.t1 |
| chr6.3 | exon | 80399203 | 80399486 | 80399203 | ID=MS.gene61379.t1.exon3;Parent=MS.gene61379.t1 |
| chr6.3 | CDS | 80399203 | 80399486 | 80399203 | ID=cds.MS.gene61379.t1;Parent=MS.gene61379.t1 |
| chr6.3 | exon | 80398213 | 80398642 | 80398213 | ID=MS.gene61379.t1.exon4;Parent=MS.gene61379.t1 |
| chr6.3 | CDS | 80398213 | 80398642 | 80398213 | ID=cds.MS.gene61379.t1;Parent=MS.gene61379.t1 |
| Gene Sequence |
| Protein sequence |
