Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61461.t1 | XP_013458081.1 | 93.3 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 4.40E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61461.t1 | A0A072UR05 | 93.3 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 3.1e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene61461 | 0.800456 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61461.t1 | MTR_4g113670 | 93.300 | 403 | 18 | 1 | 1 | 394 | 1 | 403 | 0.0 | 771 |
| MS.gene61461.t1 | MTR_4g113670 | 92.464 | 345 | 17 | 1 | 1 | 336 | 1 | 345 | 0.0 | 653 |
| MS.gene61461.t1 | MTR_4g113670 | 91.729 | 266 | 13 | 1 | 1 | 257 | 1 | 266 | 2.41e-179 | 499 |
| MS.gene61461.t1 | MTR_3g107680 | 32.483 | 431 | 237 | 10 | 1 | 391 | 1 | 417 | 1.07e-55 | 189 |
| MS.gene61461.t1 | MTR_3g107680 | 31.034 | 319 | 198 | 8 | 1 | 311 | 1 | 305 | 3.36e-32 | 125 |
| MS.gene61461.t1 | MTR_1g084210 | 29.577 | 142 | 95 | 3 | 1 | 139 | 54 | 193 | 6.11e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61461.t1 | AT4G32440 | 39.447 | 398 | 202 | 10 | 1 | 387 | 1 | 370 | 7.06e-74 | 235 |
| MS.gene61461.t1 | AT4G32440 | 38.875 | 391 | 200 | 10 | 1 | 380 | 1 | 363 | 1.15e-69 | 224 |
| MS.gene61461.t1 | AT5G20030 | 38.000 | 400 | 168 | 11 | 1 | 394 | 1 | 326 | 2.16e-63 | 206 |
| MS.gene61461.t1 | AT5G20030 | 38.000 | 400 | 168 | 11 | 1 | 394 | 1 | 326 | 2.16e-63 | 206 |
| MS.gene61461.t1 | AT4G32440 | 33.993 | 303 | 167 | 7 | 1 | 290 | 1 | 283 | 2.74e-40 | 145 |
| MS.gene61461.t1 | AT2G25590 | 47.101 | 138 | 71 | 2 | 1 | 137 | 1 | 137 | 9.15e-35 | 132 |
Find 94 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTGTTCCCAACTTAA+AGG | 0.192880 | 8.3:-13581642 | None:intergenic |
| AAGTTAGCAAATTTGATATT+CGG | 0.271483 | 8.3:+13580521 | MS.gene61461:CDS |
| TGCATTGCTGTTAGGCTACT+TGG | 0.324453 | 8.3:+13580481 | MS.gene61461:CDS |
| TACAGGAAATTGCAATTTAT+AGG | 0.333504 | 8.3:-13581442 | None:intergenic |
| TGTCAGCTTTGACTTATAAT+CGG | 0.338593 | 8.3:+13581055 | MS.gene61461:CDS |
| GCTGCTGTGGGTTGTTCATT+TGG | 0.339068 | 8.3:+13581345 | MS.gene61461:CDS |
| CACTTGAACTTGTGGAGAAT+TGG | 0.339132 | 8.3:+13580380 | MS.gene61461:CDS |
| AGCAAAGCTGAGGTGCCTTC+TGG | 0.348934 | 8.3:+13580223 | MS.gene61461:CDS |
| GAAGAATGGGATTGTTGATA+TGG | 0.349536 | 8.3:+13581299 | MS.gene61461:CDS |
| AGTTAGCAAATTTGATATTC+GGG | 0.355743 | 8.3:+13580522 | MS.gene61461:CDS |
| CTGAACCTCTGCCAAAGTTA+AGG | 0.366412 | 8.3:+13581142 | MS.gene61461:CDS |
| AATTGGCAAGGAAAATTCAT+AGG | 0.383309 | 8.3:+13581568 | MS.gene61461:CDS |
| GGTTCTGCTAGCTGTGATAA+TGG | 0.406897 | 8.3:+13580985 | MS.gene61461:CDS |
| CGCAGAGATCATCGGTGGTA+AGG | 0.424268 | 8.3:+13580258 | MS.gene61461:CDS |
| CTGAGGTGCCTTCTGGCTCC+TGG | 0.431731 | 8.3:+13580230 | MS.gene61461:CDS |
| TGAACCTCTGCCAAAGTTAA+GGG | 0.432025 | 8.3:+13581143 | MS.gene61461:CDS |
| CGAGGGATTTCGAGGTCCTA+TGG | 0.432873 | 8.3:+13580303 | MS.gene61461:CDS |
| CCGTCCCACACGAAAAGAAT+TGG | 0.434168 | 8.3:+13581551 | MS.gene61461:CDS |
| TCCTCAATTGCCCTTAACTT+TGG | 0.435600 | 8.3:-13581153 | None:intergenic |
| TCAAATGGACCTGCAGATAC+AGG | 0.435709 | 8.3:-13581459 | None:intergenic |
| TCTTCAGCTGGCACATGTCT+TGG | 0.438373 | 8.3:-13581249 | None:intergenic |
| ATTGAGGCATTGTTTGCGTC+AGG | 0.438499 | 8.3:+13581618 | MS.gene61461:CDS |
| CTGTAAACAGTAGGAAGAAT+GGG | 0.451080 | 8.3:+13581286 | MS.gene61461:CDS |
| TTGCAATTTCCTGTATCTGC+AGG | 0.466258 | 8.3:+13581450 | MS.gene61461:CDS |
| TGCGTCAGGACCTTTAAGTT+GGG | 0.468318 | 8.3:+13581632 | MS.gene61461:CDS |
| TTGCGTCAGGACCTTTAAGT+TGG | 0.469617 | 8.3:+13581631 | MS.gene61461:CDS |
| TTGTACATGTTTAAGTGGTG+TGG | 0.472803 | 8.3:-13581214 | None:intergenic |
| TCTGTAAACAGTAGGAAGAA+TGG | 0.480789 | 8.3:+13581285 | MS.gene61461:CDS |
| GTCAGCTTTGACTTATAATC+GGG | 0.482176 | 8.3:+13581056 | MS.gene61461:CDS |
| TCAGAATTTCTCTTGGAAGA+TGG | 0.485444 | 8.3:+13580429 | MS.gene61461:CDS |
| GATGATCTCTGCGCATAGCC+AGG | 0.490942 | 8.3:-13580248 | None:intergenic |
| CGATCATGCGATTCAAGAAA+GGG | 0.496319 | 8.3:+13580182 | None:intergenic |
| TGTACATGTTTAAGTGGTGT+GGG | 0.498268 | 8.3:-13581213 | None:intergenic |
| GCCAAAGTTAAGGGCAATTG+AGG | 0.503706 | 8.3:+13581152 | MS.gene61461:CDS |
| GAACTGTCTACATCTTCAAA+TGG | 0.507082 | 8.3:-13581474 | None:intergenic |
| CATGTTTAAGTGGTGTGGGT+GGG | 0.509663 | 8.3:-13581209 | None:intergenic |
| GCGATCATGCGATTCAAGAA+AGG | 0.510558 | 8.3:+13580181 | None:intergenic |
| TTAAGGGCAATTGAGGATGA+TGG | 0.517889 | 8.3:+13581159 | MS.gene61461:CDS |
| AGATGTAACAAAGCAAGAGT+TGG | 0.522342 | 8.3:+13581183 | MS.gene61461:CDS |
| TCCTATGGATGAGGAAATTG+TGG | 0.522986 | 8.3:+13580318 | MS.gene61461:CDS |
| AGTTCAAGTGGCGGCGGACA+CGG | 0.523763 | 8.3:-13580367 | None:intergenic |
| GAGGAAACAAATTGCTGCTG+TGG | 0.532654 | 8.3:+13581332 | MS.gene61461:CDS |
| GCGCATAGCCAGGAGCCAGA+AGG | 0.534346 | 8.3:-13580238 | None:intergenic |
| TTTCTCTTGGAAGATGGCTA+CGG | 0.534357 | 8.3:+13580435 | MS.gene61461:CDS |
| AAGTATATCAGAATTTCTCT+TGG | 0.536145 | 8.3:+13580422 | MS.gene61461:CDS |
| GCGATTCAAGAAAGGGACTA+AGG | 0.538395 | 8.3:+13580189 | MS.gene61461:CDS |
| GCAAGATGACAAGTGGTTTG+TGG | 0.539879 | 8.3:+13580558 | MS.gene61461:CDS |
| TAGGCTACTTGGATCTTCTG+TGG | 0.539977 | 8.3:+13580492 | MS.gene61461:CDS |
| TCCGCCGCCACTTGAACTTG+TGG | 0.540574 | 8.3:+13580372 | MS.gene61461:CDS |
| TGCCTATCGTTGTACAATTG+AGG | 0.543589 | 8.3:+13581602 | MS.gene61461:CDS |
| ACATGTTTAAGTGGTGTGGG+TGG | 0.546027 | 8.3:-13581210 | None:intergenic |
| TGGCTATGCGCAGAGATCAT+CGG | 0.547396 | 8.3:+13580250 | MS.gene61461:CDS |
| GCATATTTATAATCTTCAGC+TGG | 0.551671 | 8.3:-13581261 | None:intergenic |
| GATGACAAGTGGTTTGTGGT+TGG | 0.552395 | 8.3:+13580562 | MS.gene61461:CDS |
| GTTATGTACGAGGGATTTCG+AGG | 0.554172 | 8.3:+13580295 | MS.gene61461:CDS |
| ATTGCCCTTAACTTTGGCAG+AGG | 0.559077 | 8.3:-13581147 | None:intergenic |
| TGCTGAATCTACCTGCGAGA+GGG | 0.563461 | 8.3:+13581506 | MS.gene61461:CDS |
| GCAGAGATCATCGGTGGTAA+GGG | 0.566486 | 8.3:+13580259 | MS.gene61461:CDS |
| TTGGACTCCAGGTGATATTG+TGG | 0.573973 | 8.3:+13580399 | MS.gene61461:CDS |
| AATATGCTTCTGTAAACAGT+AGG | 0.574800 | 8.3:+13581277 | MS.gene61461:CDS |
| TCCACAAGTTCAAGTGGCGG+CGG | 0.577331 | 8.3:-13580373 | None:intergenic |
| AACAGAGCATGTAACACTAT+CGG | 0.581635 | 8.3:-13581391 | None:intergenic |
| CTTGTGGAGAATTGGACTCC+AGG | 0.586001 | 8.3:+13580388 | MS.gene61461:CDS |
| ATTTCGAGGTCCTATGGATG+AGG | 0.586670 | 8.3:+13580309 | MS.gene61461:CDS |
| TAGTATCGAAGAAATCGATA+AGG | 0.594548 | 8.3:+13580344 | MS.gene61461:CDS |
| CAATTTATAGGAATTCCCAC+TGG | 0.599832 | 8.3:-13581430 | None:intergenic |
| TGCCTCAATTGTACAACGAT+AGG | 0.611837 | 8.3:-13581604 | None:intergenic |
| AGGACGTCATTCACAAGTTG+AGG | 0.614174 | 8.3:+13581113 | MS.gene61461:CDS |
| CAATTCTCCACAAGTTCAAG+TGG | 0.615692 | 8.3:-13580379 | None:intergenic |
| TCCACAATTTCCTCATCCAT+AGG | 0.616278 | 8.3:-13580319 | None:intergenic |
| TTGATATGTTAAGCGAAAGA+CGG | 0.617141 | 8.3:-13581680 | None:intergenic |
| TATACTTCCACAATATCACC+TGG | 0.621237 | 8.3:-13580406 | None:intergenic |
| CCACACGAAAAGAATTGGCA+AGG | 0.628263 | 8.3:+13581556 | MS.gene61461:CDS |
| CAAGTGGTTTGTGGTTGGAA+AGG | 0.629078 | 8.3:+13580567 | MS.gene61461:CDS |
| GATAGTGTTACATGCTCTGT+TGG | 0.630628 | 8.3:+13581393 | MS.gene61461:CDS |
| CCGTTACACTGTTATGTACG+AGG | 0.631990 | 8.3:+13580285 | MS.gene61461:CDS |
| CGTTACACTGTTATGTACGA+GGG | 0.633292 | 8.3:+13580286 | MS.gene61461:CDS |
| ATGCTGAATCTACCTGCGAG+AGG | 0.634524 | 8.3:+13581505 | MS.gene61461:CDS |
| TTCTCCACAAGTTCAAGTGG+CGG | 0.638349 | 8.3:-13580376 | None:intergenic |
| GCTGAATCTACCTGCGAGAG+GGG | 0.638768 | 8.3:+13581507 | MS.gene61461:CDS |
| AGGAAACAAATTGCTGCTGT+GGG | 0.647045 | 8.3:+13581333 | MS.gene61461:CDS |
| CTGAATCTACCTGCGAGAGG+GGG | 0.652340 | 8.3:+13581508 | MS.gene61461:CDS |
| AGTCGTGGCAAGATGACAAG+TGG | 0.661513 | 8.3:+13580551 | MS.gene61461:CDS |
| GGAAGTGCTAAGCAAAGCTG+AGG | 0.663188 | 8.3:+13580213 | MS.gene61461:CDS |
| TTGATATGGACACAGAGAGG+AGG | 0.663740 | 8.3:+13581313 | MS.gene61461:CDS |
| CCTCGTACATAACAGTGTAA+CGG | 0.667999 | 8.3:-13580285 | None:intergenic |
| ATATGTTAAGCGAAAGACGG+AGG | 0.671653 | 8.3:-13581677 | None:intergenic |
| ATATTCGGGTCAGACAGTCG+TGG | 0.673799 | 8.3:+13580536 | MS.gene61461:CDS |
| GGTAGCTGTAGTATCACCAG+TGG | 0.674097 | 8.3:+13581414 | MS.gene61461:CDS |
| ATTCAAGAAAGGGACTAAGG+TGG | 0.678749 | 8.3:+13580192 | MS.gene61461:CDS |
| CGTACATAACAGTGTAACGG+TGG | 0.697452 | 8.3:-13580282 | None:intergenic |
| CTATGCGCAGAGATCATCGG+TGG | 0.699678 | 8.3:+13580253 | MS.gene61461:CDS |
| GTAGCTGTAGTATCACCAGT+GGG | 0.708719 | 8.3:+13581415 | MS.gene61461:CDS |
| TTGTTGATATGGACACAGAG+AGG | 0.716324 | 8.3:+13581310 | MS.gene61461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTAATTGAAATTTTAATAA+AGG | + | chr8.3:13580781-13580800 | MS.gene61461:intron | 15.0% |
| !!! | TTAATAAAGGAATTTTTCTT+AGG | + | chr8.3:13580794-13580813 | MS.gene61461:intron | 15.0% |
| !!! | TTTGTTATTTTCATTATATG+TGG | + | chr8.3:13580616-13580635 | MS.gene61461:intron | 15.0% |
| !! | AAATAACAAAATGACTCATA+TGG | - | chr8.3:13580606-13580625 | None:intergenic | 20.0% |
| !! | AAGTTAGCAAATTTGATATT+CGG | + | chr8.3:13580521-13580540 | MS.gene61461:CDS | 20.0% |
| !! | AATAACAAAATGACTCATAT+GGG | - | chr8.3:13580605-13580624 | None:intergenic | 20.0% |
| !! | AATATGAACTGAAGAAAATT+TGG | - | chr8.3:13580863-13580882 | None:intergenic | 20.0% |
| !!! | TTCAATGTTTTAAAAGAAAC+AGG | - | chr8.3:13581090-13581109 | None:intergenic | 20.0% |
| ! | AAACAGAATACATTGAATCA+AGG | - | chr8.3:13580722-13580741 | None:intergenic | 25.0% |
| ! | AAGTATATCAGAATTTCTCT+TGG | + | chr8.3:13580422-13580441 | MS.gene61461:CDS | 25.0% |
| ! | AGTTAGCAAATTTGATATTC+GGG | + | chr8.3:13580522-13580541 | MS.gene61461:CDS | 25.0% |
| ! | TACAGGAAATTGCAATTTAT+AGG | - | chr8.3:13581445-13581464 | None:intergenic | 25.0% |
| !! | ACATTTTGTACATGTTTAAG+TGG | - | chr8.3:13581222-13581241 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTAAATGTTTC+TGG | + | chr8.3:13580907-13580926 | MS.gene61461:intron | 25.0% |
| !!! | TCTTTTAAAACATTGAAACG+AGG | + | chr8.3:13581093-13581112 | MS.gene61461:CDS | 25.0% |
| AATATGCTTCTGTAAACAGT+AGG | + | chr8.3:13581277-13581296 | MS.gene61461:CDS | 30.0% | |
| AATTGGCAAGGAAAATTCAT+AGG | + | chr8.3:13581568-13581587 | MS.gene61461:CDS | 30.0% | |
| GCATATTTATAATCTTCAGC+TGG | - | chr8.3:13581264-13581283 | None:intergenic | 30.0% | |
| TTATGCTTCTACTATCTTCA+GGG | + | chr8.3:13580964-13580983 | MS.gene61461:intron | 30.0% | |
| TTGATATGTTAAGCGAAAGA+CGG | - | chr8.3:13581683-13581702 | None:intergenic | 30.0% | |
| TTTATGCTTCTACTATCTTC+AGG | + | chr8.3:13580963-13580982 | MS.gene61461:intron | 30.0% | |
| ! | TAGTATCGAAGAAATCGATA+AGG | + | chr8.3:13580344-13580363 | MS.gene61461:CDS | 30.0% |
| ! | TGTCAGCTTTGACTTATAAT+CGG | + | chr8.3:13581055-13581074 | MS.gene61461:CDS | 30.0% |
| !! | GGAATTTTTCTTAGGTTGTT+TGG | + | chr8.3:13580802-13580821 | MS.gene61461:intron | 30.0% |
| !!! | GTTGGTTTTTATCAAGCTTT+TGG | + | chr8.3:13580691-13580710 | MS.gene61461:intron | 30.0% |
| !!! | TGTTTTAAAAGAAACAGGAC+AGG | - | chr8.3:13581085-13581104 | None:intergenic | 30.0% |
| AACAGAGCATGTAACACTAT+CGG | - | chr8.3:13581394-13581413 | None:intergenic | 35.0% | |
| AGATGTAACAAAGCAAGAGT+TGG | + | chr8.3:13581183-13581202 | MS.gene61461:CDS | 35.0% | |
| CAATTTATAGGAATTCCCAC+TGG | - | chr8.3:13581433-13581452 | None:intergenic | 35.0% | |
| CTGTAAACAGTAGGAAGAAT+GGG | + | chr8.3:13581286-13581305 | MS.gene61461:CDS | 35.0% | |
| GAACTGTCTACATCTTCAAA+TGG | - | chr8.3:13581477-13581496 | None:intergenic | 35.0% | |
| GAAGAATGGGATTGTTGATA+TGG | + | chr8.3:13581299-13581318 | MS.gene61461:CDS | 35.0% | |
| TATACTTCCACAATATCACC+TGG | - | chr8.3:13580409-13580428 | None:intergenic | 35.0% | |
| TCAGAATTTCTCTTGGAAGA+TGG | + | chr8.3:13580429-13580448 | MS.gene61461:CDS | 35.0% | |
| TCTGTAAACAGTAGGAAGAA+TGG | + | chr8.3:13581285-13581304 | MS.gene61461:CDS | 35.0% | |
| TGTACATGTTTAAGTGGTGT+GGG | - | chr8.3:13581216-13581235 | None:intergenic | 35.0% | |
| TTGCAGATCATATGTTGAGT+TGG | + | chr8.3:13580673-13580692 | MS.gene61461:intron | 35.0% | |
| TTGTACATGTTTAAGTGGTG+TGG | - | chr8.3:13581217-13581236 | None:intergenic | 35.0% | |
| ! | GTCAGCTTTGACTTATAATC+GGG | + | chr8.3:13581056-13581075 | MS.gene61461:CDS | 35.0% |
| AGGAAACAAATTGCTGCTGT+GGG | + | chr8.3:13581333-13581352 | MS.gene61461:CDS | 40.0% | |
| ATATGTTAAGCGAAAGACGG+AGG | - | chr8.3:13581680-13581699 | None:intergenic | 40.0% | |
| ATCTGCAACCACATTTGTAC+TGG | - | chr8.3:13580661-13580680 | None:intergenic | 40.0% | |
| ATTCAAGAAAGGGACTAAGG+TGG | + | chr8.3:13580192-13580211 | MS.gene61461:CDS | 40.0% | |
| CAATTCTCCACAAGTTCAAG+TGG | - | chr8.3:13580382-13580401 | None:intergenic | 40.0% | |
| CACTTGAACTTGTGGAGAAT+TGG | + | chr8.3:13580380-13580399 | MS.gene61461:CDS | 40.0% | |
| CCTCGTACATAACAGTGTAA+CGG | - | chr8.3:13580288-13580307 | None:intergenic | 40.0% | |
| CGTTACACTGTTATGTACGA+GGG | + | chr8.3:13580286-13580305 | MS.gene61461:CDS | 40.0% | |
| GATAGTGTTACATGCTCTGT+TGG | + | chr8.3:13581393-13581412 | MS.gene61461:CDS | 40.0% | |
| GCTTCTTGTTCCCAACTTAA+AGG | - | chr8.3:13581645-13581664 | None:intergenic | 40.0% | |
| TCCACAATTTCCTCATCCAT+AGG | - | chr8.3:13580322-13580341 | None:intergenic | 40.0% | |
| TCCTATGGATGAGGAAATTG+TGG | + | chr8.3:13580318-13580337 | MS.gene61461:CDS | 40.0% | |
| TCCTCAATTGCCCTTAACTT+TGG | - | chr8.3:13581156-13581175 | None:intergenic | 40.0% | |
| TGAACCTCTGCCAAAGTTAA+GGG | + | chr8.3:13581143-13581162 | MS.gene61461:CDS | 40.0% | |
| TGCCTATCGTTGTACAATTG+AGG | + | chr8.3:13581602-13581621 | MS.gene61461:CDS | 40.0% | |
| TGCCTCAATTGTACAACGAT+AGG | - | chr8.3:13581607-13581626 | None:intergenic | 40.0% | |
| TTAAGGGCAATTGAGGATGA+TGG | + | chr8.3:13581159-13581178 | MS.gene61461:CDS | 40.0% | |
| TTGCAATTTCCTGTATCTGC+AGG | + | chr8.3:13581450-13581469 | MS.gene61461:CDS | 40.0% | |
| TTGTTGATATGGACACAGAG+AGG | + | chr8.3:13581310-13581329 | MS.gene61461:CDS | 40.0% | |
| TTTCTCTTGGAAGATGGCTA+CGG | + | chr8.3:13580435-13580454 | MS.gene61461:CDS | 40.0% | |
| ! | CTTGCCAATTCTTTTCGTGT+GGG | - | chr8.3:13581558-13581577 | None:intergenic | 40.0% |
| ! | GGAAAAAGTGCATTGCTGTT+AGG | + | chr8.3:13580473-13580492 | MS.gene61461:CDS | 40.0% |
| ! | TTTGTACTGGCAAGGACAAT+TGG | - | chr8.3:13580648-13580667 | None:intergenic | 40.0% |
| !!! | CTACGGTTTTGAAGGTTTTG+GGG | + | chr8.3:13580452-13580471 | MS.gene61461:CDS | 40.0% |
| !!! | GCTACGGTTTTGAAGGTTTT+GGG | + | chr8.3:13580451-13580470 | MS.gene61461:CDS | 40.0% |
| ACATGTTTAAGTGGTGTGGG+TGG | - | chr8.3:13581213-13581232 | None:intergenic | 45.0% | |
| AGGACGTCATTCACAAGTTG+AGG | + | chr8.3:13581113-13581132 | MS.gene61461:CDS | 45.0% | |
| ATTGCCCTTAACTTTGGCAG+AGG | - | chr8.3:13581150-13581169 | None:intergenic | 45.0% | |
| ATTTCGAGGTCCTATGGATG+AGG | + | chr8.3:13580309-13580328 | MS.gene61461:CDS | 45.0% | |
| CATGTTTAAGTGGTGTGGGT+GGG | - | chr8.3:13581212-13581231 | None:intergenic | 45.0% | |
| CCACACGAAAAGAATTGGCA+AGG | + | chr8.3:13581556-13581575 | MS.gene61461:CDS | 45.0% | |
| CCGTTACACTGTTATGTACG+AGG | + | chr8.3:13580285-13580304 | MS.gene61461:CDS | 45.0% | |
| CGTACATAACAGTGTAACGG+TGG | - | chr8.3:13580285-13580304 | None:intergenic | 45.0% | |
| CTGAACCTCTGCCAAAGTTA+AGG | + | chr8.3:13581142-13581161 | MS.gene61461:CDS | 45.0% | |
| GAGGAAACAAATTGCTGCTG+TGG | + | chr8.3:13581332-13581351 | MS.gene61461:CDS | 45.0% | |
| GCAAGATGACAAGTGGTTTG+TGG | + | chr8.3:13580558-13580577 | MS.gene61461:CDS | 45.0% | |
| GCCAAAGTTAAGGGCAATTG+AGG | + | chr8.3:13581152-13581171 | MS.gene61461:CDS | 45.0% | |
| GCGATTCAAGAAAGGGACTA+AGG | + | chr8.3:13580189-13580208 | MS.gene61461:CDS | 45.0% | |
| GGTTCTGCTAGCTGTGATAA+TGG | + | chr8.3:13580985-13581004 | MS.gene61461:CDS | 45.0% | |
| GTAGCTGTAGTATCACCAGT+GGG | + | chr8.3:13581415-13581434 | MS.gene61461:CDS | 45.0% | |
| GTTATGTACGAGGGATTTCG+AGG | + | chr8.3:13580295-13580314 | MS.gene61461:CDS | 45.0% | |
| TAGGCTACTTGGATCTTCTG+TGG | + | chr8.3:13580492-13580511 | MS.gene61461:CDS | 45.0% | |
| TCAAATGGACCTGCAGATAC+AGG | - | chr8.3:13581462-13581481 | None:intergenic | 45.0% | |
| TGTCCTTGCCAGTACAAATG+TGG | + | chr8.3:13580650-13580669 | MS.gene61461:intron | 45.0% | |
| TTCTCCACAAGTTCAAGTGG+CGG | - | chr8.3:13580379-13580398 | None:intergenic | 45.0% | |
| TTGATATGGACACAGAGAGG+AGG | + | chr8.3:13581313-13581332 | MS.gene61461:CDS | 45.0% | |
| TTGCGTCAGGACCTTTAAGT+TGG | + | chr8.3:13581631-13581650 | MS.gene61461:CDS | 45.0% | |
| TTGGACTCCAGGTGATATTG+TGG | + | chr8.3:13580399-13580418 | MS.gene61461:CDS | 45.0% | |
| ! | CAACCACATTTGTACTGGCA+AGG | - | chr8.3:13580656-13580675 | None:intergenic | 45.0% |
| ! | CAAGTGGTTTGTGGTTGGAA+AGG | + | chr8.3:13580567-13580586 | MS.gene61461:CDS | 45.0% |
| ! | CAATTCTTTTCGTGTGGGAC+GGG | - | chr8.3:13581553-13581572 | None:intergenic | 45.0% |
| ! | CCAATTCTTTTCGTGTGGGA+CGG | - | chr8.3:13581554-13581573 | None:intergenic | 45.0% |
| ! | CCTTGCCAATTCTTTTCGTG+TGG | - | chr8.3:13581559-13581578 | None:intergenic | 45.0% |
| ! | GATGACAAGTGGTTTGTGGT+TGG | + | chr8.3:13580562-13580581 | MS.gene61461:CDS | 45.0% |
| ! | TGCATTGCTGTTAGGCTACT+TGG | + | chr8.3:13580481-13580500 | MS.gene61461:CDS | 45.0% |
| ! | TGCGTCAGGACCTTTAAGTT+GGG | + | chr8.3:13581632-13581651 | MS.gene61461:CDS | 45.0% |
| !! | ATTGAGGCATTGTTTGCGTC+AGG | + | chr8.3:13581618-13581637 | MS.gene61461:CDS | 45.0% |
| !! | GAAGATGGCTACGGTTTTGA+AGG | + | chr8.3:13580444-13580463 | MS.gene61461:CDS | 45.0% |
| !!! | GGCTACGGTTTTGAAGGTTT+TGG | + | chr8.3:13580450-13580469 | MS.gene61461:CDS | 45.0% |
| AGTCGTGGCAAGATGACAAG+TGG | + | chr8.3:13580551-13580570 | MS.gene61461:CDS | 50.0% | |
| ATATTCGGGTCAGACAGTCG+TGG | + | chr8.3:13580536-13580555 | MS.gene61461:CDS | 50.0% | |
| ATGCTGAATCTACCTGCGAG+AGG | + | chr8.3:13581505-13581524 | MS.gene61461:CDS | 50.0% | |
| CCGTCCCACACGAAAAGAAT+TGG | + | chr8.3:13581551-13581570 | MS.gene61461:CDS | 50.0% | |
| CTTGTGGAGAATTGGACTCC+AGG | + | chr8.3:13580388-13580407 | MS.gene61461:CDS | 50.0% | |
| GCAGAGATCATCGGTGGTAA+GGG | + | chr8.3:13580259-13580278 | MS.gene61461:CDS | 50.0% | |
| GGTAGCTGTAGTATCACCAG+TGG | + | chr8.3:13581414-13581433 | MS.gene61461:CDS | 50.0% | |
| TCTTCAGCTGGCACATGTCT+TGG | - | chr8.3:13581252-13581271 | None:intergenic | 50.0% | |
| TGCTGAATCTACCTGCGAGA+GGG | + | chr8.3:13581506-13581525 | MS.gene61461:CDS | 50.0% | |
| TGGCTATGCGCAGAGATCAT+CGG | + | chr8.3:13580250-13580269 | MS.gene61461:CDS | 50.0% | |
| ! | GCTGCTGTGGGTTGTTCATT+TGG | + | chr8.3:13581345-13581364 | MS.gene61461:CDS | 50.0% |
| !! | GGAAGTGCTAAGCAAAGCTG+AGG | + | chr8.3:13580213-13580232 | MS.gene61461:CDS | 50.0% |
| CGAGGGATTTCGAGGTCCTA+TGG | + | chr8.3:13580303-13580322 | MS.gene61461:CDS | 55.0% | |
| CGCAGAGATCATCGGTGGTA+AGG | + | chr8.3:13580258-13580277 | MS.gene61461:CDS | 55.0% | |
| CTATGCGCAGAGATCATCGG+TGG | + | chr8.3:13580253-13580272 | MS.gene61461:CDS | 55.0% | |
| CTGAATCTACCTGCGAGAGG+GGG | + | chr8.3:13581508-13581527 | MS.gene61461:CDS | 55.0% | |
| GATGATCTCTGCGCATAGCC+AGG | - | chr8.3:13580251-13580270 | None:intergenic | 55.0% | |
| GCTGAATCTACCTGCGAGAG+GGG | + | chr8.3:13581507-13581526 | MS.gene61461:CDS | 55.0% | |
| TCCACAAGTTCAAGTGGCGG+CGG | - | chr8.3:13580376-13580395 | None:intergenic | 55.0% | |
| ! | AGCAAAGCTGAGGTGCCTTC+TGG | + | chr8.3:13580223-13580242 | MS.gene61461:CDS | 55.0% |
| AGTTCAAGTGGCGGCGGACA+CGG | - | chr8.3:13580370-13580389 | None:intergenic | 60.0% | |
| TCCGCCGCCACTTGAACTTG+TGG | + | chr8.3:13580372-13580391 | MS.gene61461:CDS | 60.0% | |
| TTCCATGTACCCCCTCTCGC+AGG | - | chr8.3:13581520-13581539 | None:intergenic | 60.0% | |
| ! | TACCTGCGAGAGGGGGTACA+TGG | + | chr8.3:13581515-13581534 | MS.gene61461:CDS | 60.0% |
| GCGCATAGCCAGGAGCCAGA+AGG | - | chr8.3:13580241-13580260 | None:intergenic | 65.0% | |
| !! | CTGAGGTGCCTTCTGGCTCC+TGG | + | chr8.3:13580230-13580249 | MS.gene61461:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13580187 | 13581767 | 13580187 | ID=MS.gene61461 |
| chr8.3 | mRNA | 13580187 | 13581767 | 13580187 | ID=MS.gene61461.t1;Parent=MS.gene61461 |
| chr8.3 | exon | 13580187 | 13580588 | 13580187 | ID=MS.gene61461.t1.exon1;Parent=MS.gene61461.t1 |
| chr8.3 | CDS | 13580187 | 13580588 | 13580187 | ID=cds.MS.gene61461.t1;Parent=MS.gene61461.t1 |
| chr8.3 | exon | 13580985 | 13581767 | 13580985 | ID=MS.gene61461.t1.exon2;Parent=MS.gene61461.t1 |
| chr8.3 | CDS | 13580985 | 13581767 | 13580985 | ID=cds.MS.gene61461.t1;Parent=MS.gene61461.t1 |
| Gene Sequence |
| Protein sequence |
