AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61706

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61706.t1 MTR_1g012610 95.721 631 25 2 1 629 10 640 0.0 1246
MS.gene61706.t1 MTR_1g012610 95.721 631 25 2 1 629 1 631 0.0 1244
MS.gene61706.t1 MTR_1g012610 95.721 631 25 2 1 629 11 641 0.0 1244
MS.gene61706.t1 MTR_0137s0080 30.488 328 193 7 19 316 114 436 4.99e-36 145
MS.gene61706.t1 MTR_3g014090 31.229 301 175 6 43 316 139 434 5.37e-36 145
MS.gene61706.t1 MTR_3g014090 31.229 301 175 6 43 316 141 436 5.39e-36 145
MS.gene61706.t1 MTR_5g023150 26.689 296 193 10 26 316 178 454 4.17e-22 100
MS.gene61706.t1 MTR_5g023150 26.689 296 193 10 26 316 275 551 5.68e-22 100
MS.gene61706.t1 MTR_4g088755 29.293 198 132 3 124 320 116 306 9.00e-20 91.7
MS.gene61706.t1 MTR_4g088745 29.293 198 132 3 124 320 121 311 9.39e-20 91.7
MS.gene61706.t1 MTR_5g066490 25.497 302 203 8 24 318 623 909 1.85e-18 90.1
MS.gene61706.t1 MTR_4g088750 28.283 198 134 3 124 320 277 467 4.22e-18 88.2
MS.gene61706.t1 MTR_2g013900 29.293 198 132 3 124 320 238 428 1.17e-17 86.7
MS.gene61706.t1 MTR_1g113960 24.917 301 200 11 30 324 285 565 6.71e-17 84.7
MS.gene61706.t1 MTR_3g100090 25.733 307 203 9 24 320 630 921 1.17e-16 84.7
MS.gene61706.t1 MTR_1g113960 25.676 296 190 12 30 319 285 556 5.64e-16 81.6
MS.gene61706.t1 MTR_3g078110 22.785 316 205 8 20 310 34 335 9.80e-16 79.7
MS.gene61706.t1 MTR_3g101210 26.642 274 179 8 51 315 313 573 1.07e-15 80.9
MS.gene61706.t1 MTR_3g101210 26.642 274 179 8 51 315 313 573 1.22e-15 80.9
MS.gene61706.t1 MTR_2g020380 35.766 137 83 4 135 268 81 215 5.73e-14 76.3
MS.gene61706.t1 MTR_4g049730 28.313 166 106 5 144 307 91 245 6.74e-14 74.3
MS.gene61706.t1 MTR_5g006560 26.087 184 129 3 124 306 181 358 6.77e-14 74.3
MS.gene61706.t1 MTR_1g103270 23.810 189 137 3 124 311 173 355 7.03e-14 74.3
MS.gene61706.t1 MTR_8g107000 25.180 278 183 9 38 310 725 982 8.16e-14 75.5
MS.gene61706.t1 MTR_5g006560 26.087 184 129 3 124 306 215 392 1.37e-13 73.6
MS.gene61706.t1 MTR_6g079540 31.056 161 103 4 152 310 511 665 2.66e-13 73.6
MS.gene61706.t1 MTR_6g079540 31.056 161 103 4 152 310 759 913 3.17e-13 73.6
MS.gene61706.t1 MTR_4g132860 25.253 198 139 4 124 320 155 344 4.30e-13 71.6
MS.gene61706.t1 MTR_4g082325 24.837 306 203 11 26 319 121 411 4.69e-13 72.0
MS.gene61706.t1 MTR_5g010730 28.977 176 109 5 152 317 522 691 7.63e-13 72.0
MS.gene61706.t1 MTR_7g092360 23.308 266 190 6 43 307 14 266 9.51e-13 71.6
MS.gene61706.t1 MTR_5g010730 28.977 176 109 5 152 317 577 746 1.13e-12 71.6
MS.gene61706.t1 MTR_3g114900 22.909 275 177 5 45 309 270 519 1.17e-12 71.2
MS.gene61706.t1 MTR_1g061190 28.322 286 176 11 36 313 549 813 1.71e-12 71.2
MS.gene61706.t1 MTR_1g081790 24.522 314 198 10 15 310 650 942 3.30e-12 70.1
MS.gene61706.t1 MTR_2g023890 27.941 272 147 13 51 306 11 249 3.43e-11 65.5
MS.gene61706.t1 MTR_5g059880 22.849 337 192 9 3 306 139 440 3.95e-11 66.2
MS.gene61706.t1 MTR_2g040510 26.000 200 129 7 120 307 138 330 4.14e-11 65.5
MS.gene61706.t1 MTR_1g026160 22.222 297 194 7 32 317 132 402 7.96e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61706.t1 AT4G32250 63.130 575 200 6 15 585 14 580 0.0 740
MS.gene61706.t1 AT4G32250 63.130 575 200 6 15 585 14 580 0.0 740
MS.gene61706.t1 AT4G32250 63.130 575 200 6 15 585 14 580 0.0 740
MS.gene61706.t1 AT5G13530 31.894 301 172 9 45 316 137 433 3.39e-36 146
MS.gene61706.t1 AT5G13530 31.894 301 172 9 45 316 137 433 3.55e-36 146
MS.gene61706.t1 AT4G24480 26.866 335 204 10 13 321 624 943 3.15e-19 92.8
MS.gene61706.t1 AT4G24480 26.888 331 204 10 13 321 624 938 2.72e-18 89.7
MS.gene61706.t1 AT4G24480 26.888 331 204 10 13 321 624 938 2.85e-18 89.7
MS.gene61706.t1 AT4G35780 23.779 307 208 11 20 319 264 551 6.38e-18 87.8
MS.gene61706.t1 AT4G38470 24.839 310 209 10 13 317 257 547 1.06e-17 87.4
MS.gene61706.t1 AT4G38470 25.484 310 203 11 13 317 257 543 1.91e-17 86.7
MS.gene61706.t1 AT2G17700 24.242 297 201 11 25 316 265 542 2.37e-17 86.3
MS.gene61706.t1 AT1G05100 32.044 181 106 7 132 306 89 258 2.68e-16 81.3
MS.gene61706.t1 AT3G63260 25.521 192 135 3 121 310 178 363 9.49e-16 80.1
MS.gene61706.t1 AT3G01490 22.772 303 212 6 24 310 87 383 2.20e-15 79.3
MS.gene61706.t1 AT4G26890 28.108 185 119 4 125 307 77 249 1.47e-14 76.6
MS.gene61706.t1 AT5G01850 27.363 201 131 5 123 316 90 282 1.57e-14 75.9
MS.gene61706.t1 AT5G01850 27.363 201 131 5 123 316 114 306 2.54e-14 75.5
MS.gene61706.t1 AT3G46930 26.131 199 138 4 124 320 275 466 3.16e-14 76.3
MS.gene61706.t1 AT3G46930 26.131 199 138 4 124 320 240 431 3.27e-14 75.9
MS.gene61706.t1 AT4G38470 25.856 263 171 10 13 270 257 500 5.07e-14 75.5
MS.gene61706.t1 AT1G08720 26.761 284 182 9 38 316 665 927 1.14e-13 75.1
MS.gene61706.t1 AT1G62400 25.253 198 139 4 124 320 161 350 1.65e-13 73.2
MS.gene61706.t1 AT5G11850 24.818 274 184 7 43 311 607 863 2.70e-13 73.9
MS.gene61706.t1 AT1G73660 24.088 274 186 7 43 311 746 1002 5.03e-13 73.2
MS.gene61706.t1 AT1G32320 26.493 268 163 11 51 307 54 298 6.78e-13 70.5
MS.gene61706.t1 AT5G58950 25.126 199 141 3 124 321 284 475 7.39e-13 72.0
MS.gene61706.t1 AT3G45790 28.571 231 143 6 35 255 92 310 1.80e-12 69.7
MS.gene61706.t1 AT2G42640 28.571 182 118 6 129 310 567 736 1.97e-12 70.9
MS.gene61706.t1 AT2G42640 28.571 182 118 6 129 310 605 774 2.35e-12 70.9
MS.gene61706.t1 AT1G18160 24.088 274 186 7 43 311 713 969 3.23e-12 70.5
MS.gene61706.t1 AT5G03730 26.071 280 180 11 38 310 547 806 7.52e-12 68.9
MS.gene61706.t1 AT5G03730 26.071 280 180 11 38 310 547 806 7.52e-12 68.9
MS.gene61706.t1 AT3G46140 28.139 231 144 6 35 255 92 310 8.23e-12 67.8
MS.gene61706.t1 AT4G23050 29.299 157 103 4 152 306 567 717 1.01e-11 68.6
MS.gene61706.t1 AT4G23050 29.299 157 103 4 152 306 566 716 1.05e-11 68.6
MS.gene61706.t1 AT4G29810 27.363 201 125 8 120 309 147 337 1.36e-11 66.6
MS.gene61706.t1 AT4G29810 27.136 199 124 8 120 307 138 326 3.89e-11 65.5
MS.gene61706.t1 AT4G29810 27.136 199 124 8 120 307 147 335 4.17e-11 65.5

Find 179 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.085084 1.3:+8949331 None:intergenic
TGACAACGATCAAGCGATTT+TGG 0.146585 1.3:-8950353 MS.gene61706:CDS
GATTCGAATGGCGTCGTAAA+AGG 0.159414 1.3:-8948950 MS.gene61706:CDS
GAAGAACATTACATGGTTTA+AGG 0.171246 1.3:+8950380 None:intergenic
AGAGCTTCTGTTGGATTTAT+TGG 0.180068 1.3:-8949074 MS.gene61706:CDS
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 1.3:+8950241 None:intergenic
CATGGAATTTCAATGTTAAA+TGG 0.209362 1.3:-8950753 MS.gene61706:CDS
GTTAAGCACCATCTTTAAAA+AGG 0.241242 1.3:+8948535 None:intergenic
TGTTCTGGAGCCATGTAATT+AGG 0.250797 1.3:+8950256 None:intergenic
GAGCTTCTGTTGGATTTATT+GGG 0.274049 1.3:-8949073 MS.gene61706:CDS
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 1.3:+8950969 None:intergenic
TTAGAACGTACTGCAGATTA+TGG 0.302417 1.3:-8949266 MS.gene61706:CDS
GGGCTTAACACATTCTCTTT+TGG 0.303938 1.3:+8948975 None:intergenic
TTTCCAGGGATGGTGAGTTT+TGG 0.309534 1.3:-8948864 MS.gene61706:CDS
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 1.3:-8949991 MS.gene61706:intron
GTCGATGTATGAATTCTTAT+AGG 0.311891 1.3:+8949209 None:intergenic
TGTTTGGTTGTCAAGTTTCC+AGG 0.313479 1.3:-8948879 MS.gene61706:CDS
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 1.3:+8949407 None:intergenic
TTCACATGATCCTCTTTGAT+TGG 0.322968 1.3:+8950843 None:intergenic
TCTGCGTGGGCCAGTTTGTT+AGG 0.324940 1.3:-8948998 MS.gene61706:CDS
CTGCTACTGGTAGGATTTCA+TGG 0.337558 1.3:-8948917 MS.gene61706:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 1.3:-8950935 MS.gene61706:CDS
CCATGGGTTATAATCCTTGT+AGG 0.362031 1.3:+8948594 None:intergenic
TTCTAGAGCTTCACGCTAAA+GGG 0.362481 1.3:-8950417 MS.gene61706:CDS
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 1.3:-8950779 MS.gene61706:CDS
ACATCTTAGCAGCAACTTCA+TGG 0.384443 1.3:+8950871 None:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 1.3:-8950960 MS.gene61706:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 1.3:-8950199 MS.gene61706:CDS
ATTCGAATGGCGTCGTAAAA+GGG 0.398237 1.3:-8948949 MS.gene61706:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 1.3:-8949372 MS.gene61706:CDS
TTGAAACTAGGCATATTAGT+TGG 0.401044 1.3:-8948693 MS.gene61706:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 1.3:+8949210 None:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 1.3:-8950945 MS.gene61706:CDS
TCTACCGTCATTGCGATTGA+TGG 0.408374 1.3:+8949094 None:intergenic
ATATTTACAGCTTTGAAACT+AGG 0.412019 1.3:-8948705 MS.gene61706:CDS
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 1.3:+8950315 None:intergenic
ATGAAAGTAATTCCAAAATC+AGG 0.416519 1.3:-8949419 MS.gene61706:CDS
ATGGCCTGGCAGCTGGTGAT+TGG 0.421439 1.3:-8949169 MS.gene61706:CDS
TTATTGGGCTGCAAACTCTC+TGG 0.426673 1.3:-8949058 MS.gene61706:CDS
AGGGGAGGGGCCTCTGCTAC+TGG 0.429138 1.3:-8948930 MS.gene61706:CDS
TTGACAACCAAACACCCATT+TGG 0.430784 1.3:+8948888 None:intergenic
ATGCCTAGTACAACTAGAAC+AGG 0.431258 1.3:+8948726 None:intergenic
AATCCATGGACTTGCGCGAT+TGG 0.432685 1.3:+8950995 None:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 1.3:-8950207 MS.gene61706:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 1.3:-8949446 MS.gene61706:CDS
TGTCCTGTTGGTGAAATATA+CGG 0.443667 1.3:-8950130 MS.gene61706:CDS
GATACTACCAAATGGGTGTT+TGG 0.448805 1.3:-8948895 MS.gene61706:CDS
TTCCCAAAACTCACCATCCC+TGG 0.449001 1.3:+8948861 None:intergenic
GTCATTTGAAACGGATTCAT+GGG 0.449610 1.3:-8950206 MS.gene61706:CDS
ATTCTAGAGCTTCACGCTAA+AGG 0.452406 1.3:-8950418 MS.gene61706:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 1.3:-8950017 MS.gene61706:CDS
GTCACGAATGGCCTGGCAGC+TGG 0.457715 1.3:-8949176 MS.gene61706:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 1.3:-8950771 MS.gene61706:CDS
TCTCCCATTGAGAATATCCT+TGG 0.462519 1.3:-8950058 MS.gene61706:CDS
CAAAGGGTCCTCGACCAATT+CGG 0.467685 1.3:+8950946 None:intergenic
ATTTCATGGATACTACCAAA+TGG 0.474128 1.3:-8948903 MS.gene61706:CDS
GACATAGGGCCTCTGACCTC+TGG 0.481700 1.3:+8950226 None:intergenic
GGTTGTCAAGTTTCCAGGGA+TGG 0.483297 1.3:-8948874 MS.gene61706:CDS
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 1.3:+8950981 None:intergenic
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 1.3:+8949336 None:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 1.3:+8949287 None:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 1.3:-8950215 MS.gene61706:CDS
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 1.3:+8950316 None:intergenic
AAACCCTTCAGAACTCGAAA+TGG 0.495513 1.3:-8949030 MS.gene61706:CDS
AAATTGTATGACGGTTCAAT+TGG 0.497991 1.3:-8950616 MS.gene61706:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 1.3:-8949467 MS.gene61706:CDS
GGTACGCTTGAAAGATGAAA+AGG 0.498765 1.3:-8949147 MS.gene61706:CDS
AGACCTGTTCTAGTTGTACT+AGG 0.500576 1.3:-8948729 MS.gene61706:CDS
TAACCCATGGCAACACAACA+TGG 0.500752 1.3:-8948581 MS.gene61706:CDS
CGACCAATCGCGCAAGTCCA+TGG 0.502376 1.3:-8950998 MS.gene61706:CDS
GATCCGTATATTTCACCAAC+AGG 0.502608 1.3:+8950127 None:intergenic
GAGGGGCCTCTGCTACTGGT+AGG 0.503223 1.3:-8948926 MS.gene61706:CDS
TGGCCTGGCAGCTGGTGATT+GGG 0.503490 1.3:-8949168 MS.gene61706:CDS
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 1.3:+8950073 None:intergenic
AACTTCAACCTCGGAAGGAT+CGG 0.506263 1.3:+8948821 None:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 1.3:+8950054 None:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 1.3:+8950004 None:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 1.3:-8950749 MS.gene61706:CDS
CTCAAAGGATCAACTTCAGG+TGG 0.513886 1.3:-8949369 MS.gene61706:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 1.3:-8949249 MS.gene61706:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 1.3:-8950283 MS.gene61706:CDS
GTTTGGTTGTCAAGTTTCCA+GGG 0.514420 1.3:-8948878 MS.gene61706:CDS
ACACATCACCTCAAAACATC+AGG 0.516904 1.3:+8950553 None:intergenic
CATGGACTTGCGCGATTGGT+CGG 0.519277 1.3:+8950999 None:intergenic
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 1.3:+8950392 None:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 1.3:-8950748 MS.gene61706:intron
TTGCAGGTCACTGAATGAAC+TGG 0.528545 1.3:-8949477 MS.gene61706:intron
TCTGCCATTTCGAGTTCTGA+AGG 0.531466 1.3:+8949026 None:intergenic
GTACCCAATCACCAGCTGCC+AGG 0.532200 1.3:+8949165 None:intergenic
TTTCATGGATACTACCAAAT+GGG 0.532985 1.3:-8948902 MS.gene61706:CDS
AGCAAACACTAGAAACTCCT+TGG 0.533146 1.3:+8950781 None:intergenic
TGAACGCGTCACGAATGGCC+TGG 0.537908 1.3:-8949183 MS.gene61706:CDS
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 1.3:-8949384 MS.gene61706:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 1.3:-8950142 MS.gene61706:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 1.3:-8949250 MS.gene61706:CDS
TGGCAGGTATGGGATCGATC+TGG 0.548820 1.3:-8950449 MS.gene61706:intron
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 1.3:+8950963 None:intergenic
TACGACGCCATTCGAATCGA+GGG 0.550381 1.3:+8948955 None:intergenic
GAATCCGTTTCAAATGACAT+AGG 0.550959 1.3:+8950211 None:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 1.3:+8950373 None:intergenic
GCACCAAGGATATTCTCAAT+GGG 0.552742 1.3:+8950055 None:intergenic
TTCGAATGGCGTCGTAAAAG+GGG 0.556323 1.3:-8948948 MS.gene61706:CDS
TAGTTGGAAACAAAGTGAAA+AGG 0.558036 1.3:-8948677 MS.gene61706:CDS
AACATGTTGAGGATCATCAC+TGG 0.559885 1.3:-8948758 MS.gene61706:CDS
AAAATCAACAACTTCAACCT+CGG 0.561609 1.3:+8948812 None:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 1.3:-8950154 MS.gene61706:CDS
AAAAGGATATTAGCAACTGA+AGG 0.563136 1.3:+8948552 None:intergenic
TGAGATTTGCATGAGTTGGG+AGG 0.563242 1.3:+8949323 None:intergenic
AACCCATGGCAACACAACAT+GGG 0.563805 1.3:-8948580 MS.gene61706:CDS
CTGCCATTTCGAGTTCTGAA+GGG 0.564065 1.3:+8949027 None:intergenic
AGCCAACGACAGTTCCGTCT+GGG 0.566135 1.3:+8949288 None:intergenic
GGGCTGCAAACTCTCTGGAA+TGG 0.566139 1.3:-8949053 MS.gene61706:CDS
ACTCTTGAACGCGTCACGAA+TGG 0.567776 1.3:-8949188 MS.gene61706:CDS
AGGAATGTCTAGAGAAGTCA+TGG 0.568023 1.3:-8951096 None:intergenic
GTCAAAACAACAGTCCTACA+AGG 0.572453 1.3:-8948608 MS.gene61706:CDS
TGGCTAATGATGGAGGAGGA+TGG 0.574319 1.3:-8949457 MS.gene61706:CDS
ACCCATGGCAACACAACATG+GGG 0.575393 1.3:-8948579 MS.gene61706:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 1.3:-8950252 MS.gene61706:CDS
TCAACTTCAGGTGGGTGACA+TGG 0.577067 1.3:-8949360 MS.gene61706:CDS
AGAAAAGTATCAACATGTTG+AGG 0.578832 1.3:-8948769 MS.gene61706:CDS
TGCAAGCCAAACATCACCAA+AGG 0.581260 1.3:+8950929 None:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 1.3:+8950061 None:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 1.3:-8949242 MS.gene61706:CDS
TGGGAATGAATCAAACACCT+TGG 0.582420 1.3:-8948844 MS.gene61706:CDS
TCAACAACTTCAACCTCGGA+AGG 0.582617 1.3:+8948816 None:intergenic
CATTCCATCAATCGCAATGA+CGG 0.585990 1.3:-8949098 MS.gene61706:CDS
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 1.3:+8950074 None:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 1.3:-8950605 MS.gene61706:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 1.3:+8950212 None:intergenic
AAGGAAAAGCACTCACCGGT+GGG 0.588053 1.3:-8949128 MS.gene61706:CDS
ACAAAGTGAAAAGGTGCAAG+AGG 0.591652 1.3:-8948668 MS.gene61706:CDS
CACCTTGGCCGATCCTTCCG+AGG 0.592446 1.3:-8948829 MS.gene61706:CDS
AACCTCGGAAGGATCGGCCA+AGG 0.594129 1.3:+8948827 None:intergenic
TGGCTAGACTAAGAGATGGA+TGG 0.594983 1.3:-8950585 MS.gene61706:CDS
GATGTTACATCCAATCAAAG+AGG 0.595757 1.3:-8950853 MS.gene61706:CDS
TTACGACGCCATTCGAATCG+AGG 0.595769 1.3:+8948954 None:intergenic
GCAAGCCAAACATCACCAAA+GGG 0.597883 1.3:+8950930 None:intergenic
TATGGGATCGATCTGGCTCA+AGG 0.601763 1.3:-8950442 MS.gene61706:CDS
GAATTATGCTTGAAGTGCCA+AGG 0.602260 1.3:-8950798 MS.gene61706:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 1.3:-8950954 MS.gene61706:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 1.3:-8950266 MS.gene61706:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 1.3:-8950625 MS.gene61706:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 1.3:-8950159 MS.gene61706:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 1.3:-8950172 MS.gene61706:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 1.3:+8949372 None:intergenic
AATGGCGTCGTAAAAGGGGA+GGG 0.612881 1.3:-8948944 MS.gene61706:CDS
GTCCCAGACGGAACTGTCGT+TGG 0.613432 1.3:-8949290 MS.gene61706:CDS
TGTTAAGCCCTCGATTCGAA+TGG 0.618387 1.3:-8948962 MS.gene61706:CDS
TCATTTGAAACGGATTCATG+GGG 0.622874 1.3:-8950205 MS.gene61706:CDS
TGAAAAGGAAAAGCACTCAC+CGG 0.625000 1.3:-8949132 MS.gene61706:CDS
ATGGCAGAATCATTCTGCGT+GGG 0.627438 1.3:-8949011 MS.gene61706:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 1.3:-8950589 MS.gene61706:CDS
TGAAATCCTACCAGTAGCAG+AGG 0.629390 1.3:+8948920 None:intergenic
AAAGGAAAAGCACTCACCGG+TGG 0.630780 1.3:-8949129 MS.gene61706:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 1.3:+8949382 None:intergenic
ATGGCGTCGTAAAAGGGGAG+GGG 0.637421 1.3:-8948943 MS.gene61706:CDS
GAATGGCGTCGTAAAAGGGG+AGG 0.641779 1.3:-8948945 MS.gene61706:CDS
TATTCTCAATGGGAGAAGGA+AGG 0.642358 1.3:+8950065 None:intergenic
AATGACGGTAGAGCTTCTGT+TGG 0.643785 1.3:-8949083 MS.gene61706:CDS
CAATGGAAACCAGAGGTCAG+AGG 0.644185 1.3:-8950235 MS.gene61706:CDS
ACATGTTGAGGATCATCACT+GGG 0.644328 1.3:-8948757 MS.gene61706:CDS
TCAAAGGATCAACTTCAGGT+GGG 0.652726 1.3:-8949368 MS.gene61706:CDS
ATGGAATGTAGAATCCCCAC+CGG 0.657028 1.3:+8949113 None:intergenic
GAAAAGCTGCATATCCCAAG+TGG 0.662621 1.3:-8950088 MS.gene61706:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 1.3:+8950171 None:intergenic
CCTACAAGGATTATAACCCA+TGG 0.667895 1.3:-8948594 MS.gene61706:CDS
AATGGCAGAATCATTCTGCG+TGG 0.675086 1.3:-8949012 MS.gene61706:CDS
AATGAACTGGCTAATGATGG+AGG 0.681313 1.3:-8949464 MS.gene61706:CDS
CAAAACATGAATGTCCCAGA+CGG 0.682309 1.3:-8949302 MS.gene61706:CDS
CCATGGCAACACAACATGGG+GGG 0.686405 1.3:-8948577 MS.gene61706:CDS
TTAGCTCAGATATTGCTCAG+AGG 0.694542 1.3:-8950288 MS.gene61706:CDS
AGGAAAAGCACTCACCGGTG+GGG 0.698636 1.3:-8949127 MS.gene61706:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 1.3:-8949461 MS.gene61706:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 1.3:-8950242 MS.gene61706:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 1.3:+8950041 None:intergenic
CCCATGGCAACACAACATGG+GGG 0.707761 1.3:-8948578 MS.gene61706:CDS
TTATAGGGTCATGAATACCG+TGG 0.720576 1.3:+8949225 None:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 1.3:+8950142 None:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 1.3:-8949397 MS.gene61706:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAATGTTAAATGGAA+GGG - chr1.3:8948880-8948899 MS.gene61706:CDS 20.0%
!! ATCATTATGAAATTGTATGA+CGG - chr1.3:8949003-8949022 MS.gene61706:CDS 20.0%
!! ATGCTAAATTAAACAAGAAT+CGG + chr1.3:8949709-8949728 None:intergenic 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG - chr1.3:8949116-8949135 MS.gene61706:CDS 20.0%
!!! TCTTTAACTTATATAGCATA+GGG - chr1.3:8949117-8949136 MS.gene61706:CDS 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG - chr1.3:8948571-8948590 MS.gene61706:CDS 20.0%
! AAAATTACTGGTCAATACTA+AGG - chr1.3:8949140-8949159 MS.gene61706:CDS 25.0%
! ATGAAAGTAATTCCAAAATC+AGG - chr1.3:8950209-8950228 MS.gene61706:CDS 25.0%
! CATGGAATTTCAATGTTAAA+TGG - chr1.3:8948875-8948894 MS.gene61706:CDS 25.0%
! GAATTTCAATGTTAAATGGA+AGG - chr1.3:8948879-8948898 MS.gene61706:CDS 25.0%
! GTGCATTTATTTCAATGTAT+AGG - chr1.3:8948916-8948935 MS.gene61706:CDS 25.0%
! TCGATGTATGAATTCTTATA+GGG + chr1.3:8950421-8950440 None:intergenic 25.0%
! TTTCAATTATCACTTCACAT+TGG - chr1.3:8949740-8949759 MS.gene61706:intron 25.0%
!!! ATATTTACAGCTTTGAAACT+AGG - chr1.3:8950923-8950942 MS.gene61706:CDS 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG + chr1.3:8950014-8950033 None:intergenic 25.0%
!!! GCTAATATCCTTTTTAAAGA+TGG - chr1.3:8951085-8951104 MS.gene61706:CDS 25.0%
AAAAGGATATTAGCAACTGA+AGG + chr1.3:8951079-8951098 None:intergenic 30.0%
AAAATCAACAACTTCAACCT+CGG + chr1.3:8950819-8950838 None:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG - chr1.3:8949012-8949031 MS.gene61706:CDS 30.0%
AATCCGTTTCAAATGACATA+GGG + chr1.3:8949419-8949438 None:intergenic 30.0%
AGCAAAAACCAATATGTTGA+AGG - chr1.3:8950998-8951017 MS.gene61706:CDS 30.0%
ATTCCTGTGATGTATTATCT+TGG - chr1.3:8949942-8949961 MS.gene61706:intron 30.0%
ATTTCATGGATACTACCAAA+TGG - chr1.3:8950725-8950744 MS.gene61706:intron 30.0%
GAAGAACATTACATGGTTTA+AGG + chr1.3:8949251-8949270 None:intergenic 30.0%
GTCGATGTATGAATTCTTAT+AGG + chr1.3:8950422-8950441 None:intergenic 30.0%
TAGCTTGATAGAAGTCAAAA+GGG + chr1.3:8948955-8948974 None:intergenic 30.0%
TAGTTGGAAACAAAGTGAAA+AGG - chr1.3:8950951-8950970 MS.gene61706:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG - chr1.3:8949128-8949147 MS.gene61706:CDS 30.0%
TCATTGAGAAGAACATTACA+TGG + chr1.3:8949258-8949277 None:intergenic 30.0%
TCGGCATCAGAAAAAAAAAA+TGG + chr1.3:8949690-8949709 None:intergenic 30.0%
TTAAATGGAAGGGTTAGATT+TGG - chr1.3:8948890-8948909 MS.gene61706:CDS 30.0%
TTATGATCATGACCGATTAT+TGG - chr1.3:8949824-8949843 MS.gene61706:intron 30.0%
TTCCTGTGATGTATTATCTT+GGG - chr1.3:8949943-8949962 MS.gene61706:intron 30.0%
TTGAAACTAGGCATATTAGT+TGG - chr1.3:8950935-8950954 MS.gene61706:CDS 30.0%
TTTCATGGATACTACCAAAT+GGG - chr1.3:8950726-8950745 MS.gene61706:intron 30.0%
! ATTATGGATTTGTTCTAGTG+AGG - chr1.3:8950378-8950397 MS.gene61706:CDS 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG + chr1.3:8948956-8948975 None:intergenic 30.0%
! TTATGGATTTGTTCTAGTGA+GGG - chr1.3:8950379-8950398 MS.gene61706:CDS 30.0%
!! AGAAAAGTATCAACATGTTG+AGG - chr1.3:8950859-8950878 MS.gene61706:CDS 30.0%
!! CATGTTTTGAGTATGATTTG+AGG - chr1.3:8949595-8949614 MS.gene61706:intron 30.0%
!! TTGATTTTAACACTTGTCCT+GGG - chr1.3:8950831-8950850 MS.gene61706:CDS 30.0%
!!! TGTTTTGACCTTCAACATAT+TGG + chr1.3:8951009-8951028 None:intergenic 30.0%
!!! TTTTGAGATTTGCATGAGTT+GGG + chr1.3:8950311-8950330 None:intergenic 30.0%
AAGGTTAAATGAAAGCCTTC+TGG - chr1.3:8949910-8949929 MS.gene61706:intron 35.0%
ACCAGTCAACATTTCAACAA+CGG + chr1.3:8949460-8949479 None:intergenic 35.0%
AGAGCTTCTGTTGGATTTAT+TGG - chr1.3:8950554-8950573 MS.gene61706:intron 35.0%
ATATTCTGCGCGTCTTTAAA+AGG - chr1.3:8949637-8949656 MS.gene61706:intron 35.0%
CCTGTGAATATTCCAAGATT+GGG - chr1.3:8949862-8949881 MS.gene61706:intron 35.0%
GAATCCGTTTCAAATGACAT+AGG + chr1.3:8949420-8949439 None:intergenic 35.0%
GAGCTTCTGTTGGATTTATT+GGG - chr1.3:8950555-8950574 MS.gene61706:intron 35.0%
GATGTTACATCCAATCAAAG+AGG - chr1.3:8948775-8948794 MS.gene61706:CDS 35.0%
TCCTGTGAATATTCCAAGAT+TGG - chr1.3:8949861-8949880 MS.gene61706:intron 35.0%
TGAATATTCCAAGATTGGGT+AGG - chr1.3:8949866-8949885 MS.gene61706:intron 35.0%
TTAGAACGTACTGCAGATTA+TGG - chr1.3:8950362-8950381 MS.gene61706:CDS 35.0%
TTCACATGATCCTCTTTGAT+TGG + chr1.3:8948788-8948807 None:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG + chr1.3:8949948-8949967 None:intergenic 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG + chr1.3:8949239-8949258 None:intergenic 35.0%
! GTCATTTGAAACGGATTCAT+GGG - chr1.3:8949422-8949441 MS.gene61706:CDS 35.0%
! TCATTTGAAACGGATTCATG+GGG - chr1.3:8949423-8949442 MS.gene61706:CDS 35.0%
! TCTCATTACCTGATGTTTTG+AGG - chr1.3:8949067-8949086 MS.gene61706:CDS 35.0%
! TGTCATTTGAAACGGATTCA+TGG - chr1.3:8949421-8949440 MS.gene61706:CDS 35.0%
! TGTCCTGTTGGTGAAATATA+CGG - chr1.3:8949498-8949517 MS.gene61706:intron 35.0%
!! GTTGATTTTAACACTTGTCC+TGG - chr1.3:8950830-8950849 MS.gene61706:CDS 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG - chr1.3:8949960-8949979 MS.gene61706:intron 35.0%
!!! GTTTTGAGATTTGCATGAGT+TGG + chr1.3:8950312-8950331 None:intergenic 35.0%
AAACCCTTCAGAACTCGAAA+TGG - chr1.3:8950598-8950617 MS.gene61706:CDS 40.0%
AACATGTTGAGGATCATCAC+TGG - chr1.3:8950870-8950889 MS.gene61706:CDS 40.0%
AAGTTGGCTAGACTAAGAGA+TGG - chr1.3:8949039-8949058 MS.gene61706:CDS 40.0%
AATATTCACAGGACAGGTAC+AGG + chr1.3:8949854-8949873 None:intergenic 40.0%
AATGAACTGGCTAATGATGG+AGG - chr1.3:8950164-8950183 MS.gene61706:CDS 40.0%
ACACATCACCTCAAAACATC+AGG + chr1.3:8949078-8949097 None:intergenic 40.0%
ACATCTTAGCAGCAACTTCA+TGG + chr1.3:8948760-8948779 None:intergenic 40.0%
ACATGTTGAGGATCATCACT+GGG - chr1.3:8950871-8950890 MS.gene61706:CDS 40.0%
ACCGTTGTTGAAATGTTGAC+TGG - chr1.3:8949456-8949475 MS.gene61706:CDS 40.0%
AGCAAACACTAGAAACTCCT+TGG + chr1.3:8948850-8948869 None:intergenic 40.0%
AGGAATACAGCTAATCCAGA+AGG + chr1.3:8949928-8949947 None:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG + chr1.3:8949570-8949589 None:intergenic 40.0%
ATGCCTAGTACAACTAGAAC+AGG + chr1.3:8950905-8950924 None:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG - chr1.3:8949376-8949395 MS.gene61706:CDS 40.0%
ATTCATTCTGCCTATGTTGC+AGG - chr1.3:8950135-8950154 MS.gene61706:CDS 40.0%
ATTCGAATGGCGTCGTAAAA+GGG - chr1.3:8950679-8950698 MS.gene61706:intron 40.0%
CAAAACATGAATGTCCCAGA+CGG - chr1.3:8950326-8950345 MS.gene61706:CDS 40.0%
CATACTCAAAACATGCACCA+AGG + chr1.3:8949590-8949609 None:intergenic 40.0%
CATTCCATCAATCGCAATGA+CGG - chr1.3:8950530-8950549 MS.gene61706:intron 40.0%
CCCAATCTTGGAATATTCAC+AGG + chr1.3:8949865-8949884 None:intergenic 40.0%
CCTACAAGGATTATAACCCA+TGG - chr1.3:8951034-8951053 MS.gene61706:CDS 40.0%
CGCAGAATATCTACCATTGA+AGG + chr1.3:8949627-8949646 None:intergenic 40.0%
CTGAATGAACTGGCTAATGA+TGG - chr1.3:8950161-8950180 MS.gene61706:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG + chr1.3:8949315-8949334 None:intergenic 40.0%
GATACTACCAAATGGGTGTT+TGG - chr1.3:8950733-8950752 MS.gene61706:intron 40.0%
GATCCGTATATTTCACCAAC+AGG + chr1.3:8949504-8949523 None:intergenic 40.0%
GCACCAAGGATATTCTCAAT+GGG + chr1.3:8949576-8949595 None:intergenic 40.0%
GCTTGGAAGTCCTAATTACA+TGG - chr1.3:8949362-8949381 MS.gene61706:CDS 40.0%
GGTACAGGTTCACCAATAAT+CGG + chr1.3:8949839-8949858 None:intergenic 40.0%
GGTACGCTTGAAAGATGAAA+AGG - chr1.3:8950481-8950500 MS.gene61706:intron 40.0%
GGTCAATACTAAGGATGTGT+TGG - chr1.3:8949149-8949168 MS.gene61706:CDS 40.0%
GTCAAAACAACAGTCCTACA+AGG - chr1.3:8951020-8951039 MS.gene61706:CDS 40.0%
GTTTGGTTGTCAAGTTTCCA+GGG - chr1.3:8950750-8950769 MS.gene61706:CDS 40.0%
TATTCTCAATGGGAGAAGGA+AGG + chr1.3:8949566-8949585 None:intergenic 40.0%
TCAAAGGATCAACTTCAGGT+GGG - chr1.3:8950260-8950279 MS.gene61706:CDS 40.0%
TCTCCCATTGAGAATATCCT+TGG - chr1.3:8949570-8949589 MS.gene61706:intron 40.0%
TCTTGGAATATTCACAGGAC+AGG + chr1.3:8949860-8949879 None:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG + chr1.3:8949316-8949335 None:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG + chr1.3:8949577-8949596 None:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG + chr1.3:8948662-8948681 None:intergenic 40.0%
TGGGAATGAATCAAACACCT+TGG - chr1.3:8950784-8950803 MS.gene61706:CDS 40.0%
TGTTTGGTTGTCAAGTTTCC+AGG - chr1.3:8950749-8950768 MS.gene61706:CDS 40.0%
TTAGCTCAGATATTGCTCAG+AGG - chr1.3:8949340-8949359 MS.gene61706:CDS 40.0%
TTATAGGGTCATGAATACCG+TGG + chr1.3:8950406-8950425 None:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG + chr1.3:8949997-8950016 None:intergenic 40.0%
TTGACAACCAAACACCCATT+TGG + chr1.3:8950743-8950762 None:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG - chr1.3:8949611-8949630 MS.gene61706:intron 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG + chr1.3:8948650-8948669 None:intergenic 40.0%
! AAGGATGTGTTGGTCGTTAA+TGG - chr1.3:8949159-8949178 MS.gene61706:CDS 40.0%
! ACAAAGTGAAAAGGTGCAAG+AGG - chr1.3:8950960-8950979 MS.gene61706:CDS 40.0%
! AGACCTGTTCTAGTTGTACT+AGG - chr1.3:8950899-8950918 MS.gene61706:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG - chr1.3:8949413-8949432 MS.gene61706:CDS 40.0%
! CCATGGGTTATAATCCTTGT+AGG + chr1.3:8951037-8951056 None:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG - chr1.3:8948830-8948849 MS.gene61706:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG - chr1.3:8949276-8949295 MS.gene61706:CDS 40.0%
! GGGCTTAACACATTCTCTTT+TGG + chr1.3:8950656-8950675 None:intergenic 40.0%
! GGTATTCCCAATCTTTTGCT+TGG - chr1.3:8949306-8949325 MS.gene61706:CDS 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG - chr1.3:8948857-8948876 MS.gene61706:CDS 40.0%
! TCTCTTTTGGCCTAACAAAC+TGG + chr1.3:8950643-8950662 None:intergenic 40.0%
! TGACAACGATCAAGCGATTT+TGG - chr1.3:8949275-8949294 MS.gene61706:CDS 40.0%
! TGATACTTTTCTACCATCCC+AGG + chr1.3:8950851-8950870 None:intergenic 40.0%
! TTGAAACTTCAGCACCGAAT+TGG - chr1.3:8948668-8948687 MS.gene61706:CDS 40.0%
! TTTTAACACTTGTCCTGGGA+TGG - chr1.3:8950835-8950854 MS.gene61706:CDS 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG - chr1.3:8948849-8948868 MS.gene61706:CDS 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG + chr1.3:8948668-8948687 None:intergenic 40.0%
!! ATTCTAGAGCTTCACGCTAA+AGG - chr1.3:8949210-8949229 MS.gene61706:CDS 40.0%
!! TGAAAAGGAAAAGCACTCAC+CGG - chr1.3:8950496-8950515 MS.gene61706:intron 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG + chr1.3:8949375-8949394 None:intergenic 40.0%
!! TTCTAGAGCTTCACGCTAAA+GGG - chr1.3:8949211-8949230 MS.gene61706:CDS 40.0%
AACCCATGGCAACACAACAT+GGG - chr1.3:8951048-8951067 MS.gene61706:CDS 45.0%
AACTTCAACCTCGGAAGGAT+CGG + chr1.3:8950810-8950829 None:intergenic 45.0%
AATGACGGTAGAGCTTCTGT+TGG - chr1.3:8950545-8950564 MS.gene61706:intron 45.0%
AATGGCAGAATCATTCTGCG+TGG - chr1.3:8950616-8950635 MS.gene61706:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG + chr1.3:8949877-8949896 None:intergenic 45.0%
ACTGGTAGTCAACCTTGGTA+TGG - chr1.3:8949474-8949493 MS.gene61706:CDS 45.0%
AGATTGGGTAGGTCTGTTGT+AGG - chr1.3:8949877-8949896 MS.gene61706:intron 45.0%
ATGGAATGTAGAATCCCCAC+CGG + chr1.3:8950518-8950537 None:intergenic 45.0%
ATGGCAGAATCATTCTGCGT+GGG - chr1.3:8950617-8950636 MS.gene61706:CDS 45.0%
CAGACATTATCCTGGATCAG+AGG + chr1.3:8949989-8950008 None:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG + chr1.3:8950148-8950167 None:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG - chr1.3:8950256-8950275 MS.gene61706:CDS 45.0%
CTCAAAGGATCAACTTCAGG+TGG - chr1.3:8950259-8950278 MS.gene61706:CDS 45.0%
CTGCTACTGGTAGGATTTCA+TGG - chr1.3:8950711-8950730 MS.gene61706:intron 45.0%
GAAAAGCTGCATATCCCAAG+TGG - chr1.3:8949540-8949559 MS.gene61706:intron 45.0%
GATTCGAATGGCGTCGTAAA+AGG - chr1.3:8950678-8950697 MS.gene61706:intron 45.0%
GCAAGCCAAACATCACCAAA+GGG + chr1.3:8948701-8948720 None:intergenic 45.0%
TAACCCATGGCAACACAACA+TGG - chr1.3:8951047-8951066 MS.gene61706:CDS 45.0%
TCAACAACTTCAACCTCGGA+AGG + chr1.3:8950815-8950834 None:intergenic 45.0%
TCAGATATTGCTCAGAGGCT+TGG - chr1.3:8949345-8949364 MS.gene61706:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG - chr1.3:8949386-8949405 MS.gene61706:CDS 45.0%
TCTACCGTCATTGCGATTGA+TGG + chr1.3:8950537-8950556 None:intergenic 45.0%
TGAAATCCTACCAGTAGCAG+AGG + chr1.3:8950711-8950730 None:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG + chr1.3:8948702-8948721 None:intergenic 45.0%
TGGCTAGACTAAGAGATGGA+TGG - chr1.3:8949043-8949062 MS.gene61706:CDS 45.0%
TGGTCGTTAATGGCAGGTAT+GGG - chr1.3:8949169-8949188 MS.gene61706:CDS 45.0%
TGTTGTAGGACTAGAGCTCA+AGG - chr1.3:8949891-8949910 MS.gene61706:intron 45.0%
TTATTGGGCTGCAAACTCTC+TGG - chr1.3:8950570-8950589 MS.gene61706:CDS 45.0%
TTCGAATGGCGTCGTAAAAG+GGG - chr1.3:8950680-8950699 MS.gene61706:intron 45.0%
TTGCAGGTCACTGAATGAAC+TGG - chr1.3:8950151-8950170 MS.gene61706:CDS 45.0%
TTGGTCGTTAATGGCAGGTA+TGG - chr1.3:8949168-8949187 MS.gene61706:CDS 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG - chr1.3:8950386-8950405 MS.gene61706:CDS 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG + chr1.3:8949390-8949409 None:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG + chr1.3:8950249-8950268 None:intergenic 45.0%
! ATGTGTTGGTCGTTAATGGC+AGG - chr1.3:8949163-8949182 MS.gene61706:CDS 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG + chr1.3:8950259-8950278 None:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG - chr1.3:8949023-8949042 MS.gene61706:CDS 45.0%
! GAAACGGATTCATGGGGATT+CGG - chr1.3:8949429-8949448 MS.gene61706:CDS 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG + chr1.3:8950224-8950243 None:intergenic 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG + chr1.3:8948613-8948632 None:intergenic 45.0%
! TGAGATTTGCATGAGTTGGG+AGG + chr1.3:8950308-8950327 None:intergenic 45.0%
! TGTTAAGCCCTCGATTCGAA+TGG - chr1.3:8950666-8950685 MS.gene61706:intron 45.0%
! TGTTGACTGGTAGTCAACCT+TGG - chr1.3:8949469-8949488 MS.gene61706:CDS 45.0%
! TTCCAGGGATGGTGAGTTTT+GGG - chr1.3:8950765-8950784 MS.gene61706:CDS 45.0%
! TTTCCAGGGATGGTGAGTTT+TGG - chr1.3:8950764-8950783 MS.gene61706:CDS 45.0%
!! CTGCCATTTCGAGTTCTGAA+GGG + chr1.3:8950604-8950623 None:intergenic 45.0%
!! TCTGCCATTTCGAGTTCTGA+AGG + chr1.3:8950605-8950624 None:intergenic 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG - chr1.3:8949976-8949995 MS.gene61706:intron 45.0%
AAGCTGTTTGTGCACGAGCA+TGG - chr1.3:8950038-8950057 MS.gene61706:CDS 50.0%
AATCCATGGACTTGCGCGAT+TGG + chr1.3:8948636-8948655 None:intergenic 50.0%
AATGGCGTCGTAAAAGGGGA+GGG - chr1.3:8950684-8950703 MS.gene61706:intron 50.0%
ACCCATGGCAACACAACATG+GGG - chr1.3:8951049-8951068 MS.gene61706:CDS 50.0%
ACTCTTGAACGCGTCACGAA+TGG - chr1.3:8950440-8950459 MS.gene61706:CDS 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG + chr1.3:8950295-8950314 None:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG + chr1.3:8948685-8948704 None:intergenic 50.0%
CAATGGAAACCAGAGGTCAG+AGG - chr1.3:8949393-8949412 MS.gene61706:CDS 50.0%
CCAACAGGACATCCATACCA+AGG + chr1.3:8949489-8949508 None:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG - chr1.3:8949486-8949505 MS.gene61706:intron 50.0%
GGAGGAGGATGGAGATATCA+AGG - chr1.3:8950182-8950201 MS.gene61706:CDS 50.0%
GGTTGTCAAGTTTCCAGGGA+TGG - chr1.3:8950754-8950773 MS.gene61706:CDS 50.0%
TACGACGCCATTCGAATCGA+GGG + chr1.3:8950676-8950695 None:intergenic 50.0%
TCAACTTCAGGTGGGTGACA+TGG - chr1.3:8950268-8950287 MS.gene61706:CDS 50.0%
TTACGACGCCATTCGAATCG+AGG + chr1.3:8950677-8950696 None:intergenic 50.0%
TTCCCAAAACTCACCATCCC+TGG + chr1.3:8950770-8950789 None:intergenic 50.0%
! GAACTGGCTAATGATGGAGG+AGG - chr1.3:8950167-8950186 MS.gene61706:CDS 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG + chr1.3:8948614-8948633 None:intergenic 50.0%
! TATGGGATCGATCTGGCTCA+AGG - chr1.3:8949186-8949205 MS.gene61706:CDS 50.0%
! TGGCTAATGATGGAGGAGGA+TGG - chr1.3:8950171-8950190 MS.gene61706:CDS 50.0%
!! AAAGGAAAAGCACTCACCGG+TGG - chr1.3:8950499-8950518 MS.gene61706:intron 50.0%
!! AAGGAAAAGCACTCACCGGT+GGG - chr1.3:8950500-8950519 MS.gene61706:intron 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG - chr1.3:8949285-8949304 MS.gene61706:CDS 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG - chr1.3:8948693-8948712 MS.gene61706:CDS 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG + chr1.3:8948606-8948625 None:intergenic 50.0%
AAGCCAACGACAGTTCCGTC+TGG + chr1.3:8950344-8950363 None:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG + chr1.3:8950343-8950362 None:intergenic 55.0%
ATGGCGTCGTAAAAGGGGAG+GGG - chr1.3:8950685-8950704 MS.gene61706:intron 55.0%
ATGGGAGAAGGAAGGCCACT+TGG + chr1.3:8949558-8949577 None:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG - chr1.3:8950244-8950263 MS.gene61706:CDS 55.0%
CATGGACTTGCGCGATTGGT+CGG + chr1.3:8948632-8948651 None:intergenic 55.0%
CCATGGCAACACAACATGGG+GGG - chr1.3:8951051-8951070 MS.gene61706:CDS 55.0%
CCCATGGCAACACAACATGG+GGG - chr1.3:8951050-8951069 MS.gene61706:CDS 55.0%
CCCCCATGTTGTGTTGCCAT+GGG + chr1.3:8951053-8951072 None:intergenic 55.0%
CGAATTGGTCGAGGACCCTT+TGG - chr1.3:8948683-8948702 MS.gene61706:CDS 55.0%
GAATGGCGTCGTAAAAGGGG+AGG - chr1.3:8950683-8950702 MS.gene61706:intron 55.0%
TGGCAGGTATGGGATCGATC+TGG - chr1.3:8949179-8949198 MS.gene61706:CDS 55.0%
TGGGAGAAGGAAGGCCACTT+GGG + chr1.3:8949557-8949576 None:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG - chr1.3:8948674-8948693 MS.gene61706:CDS 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG + chr1.3:8950300-8950319 None:intergenic 55.0%
! GGGCTGCAAACTCTCTGGAA+TGG - chr1.3:8950575-8950594 MS.gene61706:CDS 55.0%
! TCTGCGTGGGCCAGTTTGTT+AGG - chr1.3:8950630-8950649 MS.gene61706:CDS 55.0%
!! AGGAAAAGCACTCACCGGTG+GGG - chr1.3:8950501-8950520 MS.gene61706:intron 55.0%
AACCTCGGAAGGATCGGCCA+AGG + chr1.3:8950804-8950823 None:intergenic 60.0%
ATGGCCTGGCAGCTGGTGAT+TGG - chr1.3:8950459-8950478 MS.gene61706:intron 60.0%
CCCCCCATGTTGTGTTGCCA+TGG + chr1.3:8951054-8951073 None:intergenic 60.0%
CGACCAATCGCGCAAGTCCA+TGG - chr1.3:8948630-8948649 MS.gene61706:CDS 60.0%
GACATAGGGCCTCTGACCTC+TGG + chr1.3:8949405-8949424 None:intergenic 60.0%
GTACCCAATCACCAGCTGCC+AGG + chr1.3:8950466-8950485 None:intergenic 60.0%
GTCCCAGACGGAACTGTCGT+TGG - chr1.3:8950338-8950357 MS.gene61706:CDS 60.0%
TGAACGCGTCACGAATGGCC+TGG - chr1.3:8950445-8950464 MS.gene61706:CDS 60.0%
TGGCCTGGCAGCTGGTGATT+GGG - chr1.3:8950460-8950479 MS.gene61706:intron 60.0%
!! GCAGCACTGACTACACCGAG+TGG - chr1.3:8950231-8950250 MS.gene61706:CDS 60.0%
CACCTTGGCCGATCCTTCCG+AGG - chr1.3:8950799-8950818 MS.gene61706:CDS 65.0%
GAGGGGCCTCTGCTACTGGT+AGG - chr1.3:8950702-8950721 MS.gene61706:intron 65.0%
GTCACGAATGGCCTGGCAGC+TGG - chr1.3:8950452-8950471 MS.gene61706:intron 65.0%
AGGGGAGGGGCCTCTGCTAC+TGG - chr1.3:8950698-8950717 MS.gene61706:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8948536 8951114 8948536 ID=MS.gene61706
chr1.3 mRNA 8948536 8951114 8948536 ID=MS.gene61706.t1;Parent=MS.gene61706
chr1.3 exon 8950749 8951114 8950749 ID=MS.gene61706.t1.exon1;Parent=MS.gene61706.t1
chr1.3 CDS 8950749 8951114 8950749 ID=cds.MS.gene61706.t1;Parent=MS.gene61706.t1
chr1.3 exon 8950562 8950653 8950562 ID=MS.gene61706.t1.exon2;Parent=MS.gene61706.t1
chr1.3 CDS 8950562 8950653 8950562 ID=cds.MS.gene61706.t1;Parent=MS.gene61706.t1
chr1.3 exon 8949992 8950465 8949992 ID=MS.gene61706.t1.exon3;Parent=MS.gene61706.t1
chr1.3 CDS 8949992 8950465 8949992 ID=cds.MS.gene61706.t1;Parent=MS.gene61706.t1
chr1.3 exon 8948536 8949493 8948536 ID=MS.gene61706.t1.exon4;Parent=MS.gene61706.t1
chr1.3 CDS 8948536 8949493 8948536 ID=cds.MS.gene61706.t1;Parent=MS.gene61706.t1
Gene Sequence

>MS.gene61706

ATGTCTAGAGAAGTCATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCAAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGGTTAGATTTGGACTGTGCATTTATTTCAATGTATAGGATATTGTTTGCTACCCTTTTGACTTCTATCAAGCTAACACATTTGTTTGTATTCACAGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTGATGTGTTTTCAGAAAAACATGCTTATCTTTAACTTATATAGCATAGGGAAAATTACTGGTCAATACTAAGGATGTGTTGGTCGTTAATGGCAGGTATGGGATCGATCTGGCTCAAGGCATTCTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTTTGTATGCAGATGTATCAATCTGAAGCCATTTTTTTTTTCTGATGCCGATTCTTGTTTAATTTAGCATGTAGTTTCAATTTTCAATTATCACTTCACATTGGAGAAAAATACTTCACATGAAAACTTCTTAGATTCTTTAAAAGAAATTTCTGTAGTAATGAGTTATGATCATGACCGATTATTGGTGAACCTGTACCTGTCCTGTGAATATTCCAAGATTGGGTAGGTCTGTTGTAGGACTAGAGCTCAAGGTTAAATGAAAGCCTTCTGGATTAGCTGTATTCCTGTGATGTATTATCTTGGGAAGTGTTTACATTTTGGCTTCCTCTGATCCAGGATAATGTCTGTACCTGAAAGAACTAAATCAATAAGCATGAAGCTGTTTGTGCACGAGCATGGTTATCTTTTTAGTTAATATCTATTTATCTTCATGCAGATAAGAAATAATTTATGTTGAATATTACTTTATTCTTATTCATTCTGCCTATGTTGCAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAATCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAATGGCCTGGCAGCTGGTGATTGGGTACGCTTGAAAGATGAAAAGGAAAAGCACTCACCGGTGGGGATTCTACATTCCATCAATCGCAATGACGGTAGAGCTTCTGTTGGATTTATTGGGCTGCAAACTCTCTGGAATGGAAACCCTTCAGAACTCGAAATGGCAGAATCATTCTGCGTGGGCCAGTTTGTTAGGCCAAAAGAGAATGTGTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCTGCTACTGGTAGGATTTCATGGATACTACCAAATGGGTGTTTGGTTGTCAAGTTTCCAGGGATGGTGAGTTTTGGGAATGAATCAAACACCTTGGCCGATCCTTCCGAGGTTGAAGTTGTTGATTTTAACACTTGTCCTGGGATGGTAGAAAAGTATCAACATGTTGAGGATCATCACTGGGCTGTAAGACCTGTTCTAGTTGTACTAGGCATATTTACAGCTTTGAAACTAGGCATATTAGTTGGAAACAAAGTGAAAAGGTGCAAGAGGTTCAATGCAAAAGAAAGCAAAAACCAATATGTTGAAGGTCAAAACAACAGTCCTACAAGGATTATAACCCATGGCAACACAACATGGGGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA
Protein sequence

>MS.gene61706.t1

MSREVMASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDHVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKSQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTNGLAAGDWVRLKDEKEKHSPVGILHSINRNDGRASVGFIGLQTLWNGNPSELEMAESFCVGQFVRPKENVLSPRFEWRRKRGGASATGRISWILPNGCLVVKFPGMVSFGNESNTLADPSEVEVVDFNTCPGMVEKYQHVEDHHWAVRPVLVVLGIFTALKLGILVGNKVKRCKRFNAKESKNQYVEGQNNSPTRIITHGNTTWGVPSVANILFKDGA