Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61983.t1 | XP_024637518.1 | 86.5 | 244 | 23 | 1 | 1 | 234 | 306 | 549 | 3.70E-111 | 411 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61983.t1 | P53683 | 68.5 | 235 | 62 | 3 | 1 | 224 | 289 | 522 | 7.9e-86 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61983.t1 | G7JJ65 | 86.5 | 244 | 23 | 1 | 1 | 234 | 300 | 543 | 2.7e-111 | 411.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061217 | MS.gene61983 | 0.870532 | 1.36E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGAAACGTTTGAAAATA+TGG | 0.208046 | 8.2:-2180958 | MS.gene61983:CDS |
| TTAGAAGTAATTCTCTTCTT+TGG | 0.235983 | 8.2:+2182026 | None:intergenic |
| TATCTAGAATGAAACAATTC+AGG | 0.281671 | 8.2:-2181217 | MS.gene61983:CDS |
| AACATATTCTCAAGGCATTT+CGG | 0.355438 | 8.2:-2180676 | MS.gene61983:CDS |
| GCATATTACTAGAGAGGAAT+TGG | 0.363612 | 8.2:-2180211 | MS.gene61983:CDS |
| GTAATTCTCTTCTTTGGATC+TGG | 0.367241 | 8.2:+2182032 | None:intergenic |
| AAGACAGGCTTGGCTCGAAT+TGG | 0.370556 | 8.2:-2180897 | MS.gene61983:CDS |
| TTAGCACTGTCTGATATTGA+TGG | 0.374689 | 8.2:+2182080 | None:intergenic |
| GTCAAGTTCACCCTCCAATA+TGG | 0.379689 | 8.2:+2182121 | None:intergenic |
| TTTCTTTGCAGAAACTGATA+AGG | 0.381190 | 8.2:-2182156 | None:intergenic |
| GTTTCTCAGGCCGATGTTGA+TGG | 0.386351 | 8.2:-2180767 | MS.gene61983:intron |
| ATTCAGTAGATTTAAAATAC+TGG | 0.409433 | 8.2:+2179971 | None:intergenic |
| TTCTTTGCAGAAACTGATAA+GGG | 0.416327 | 8.2:-2182155 | None:intergenic |
| CAGGCCGATGTTGATGGAAA+AGG | 0.416594 | 8.2:-2180761 | MS.gene61983:CDS |
| TGACTATCTTGAATTCATAT+CGG | 0.417280 | 8.2:-2180732 | MS.gene61983:CDS |
| GGGACTATTGAATGCCATAT+TGG | 0.419498 | 8.2:-2182135 | MS.gene61983:CDS |
| TTAAATACGTTCAAGAAACT+TGG | 0.431912 | 8.2:-2181191 | MS.gene61983:CDS |
| CTTCAATTCTTCACAGGTGA+TGG | 0.448646 | 8.2:+2180917 | None:intergenic |
| GTTCAAGAAACTTGGGTTGA+AGG | 0.450387 | 8.2:-2181183 | MS.gene61983:intron |
| ATTACTTCTAAACAAGTCCT+TGG | 0.468958 | 8.2:-2182014 | MS.gene61983:intron |
| GCCTGTCTTCAATTCTTCAC+AGG | 0.486688 | 8.2:+2180911 | None:intergenic |
| GGCTGAAAATATAGCGGAAG+AGG | 0.497414 | 8.2:-2180991 | MS.gene61983:CDS |
| CACATCCGTCTCTCATCCAC+GGG | 0.505545 | 8.2:+2181273 | None:intergenic |
| CGGCTGCAATGCATAGGTAC+AGG | 0.508532 | 8.2:-2180712 | MS.gene61983:CDS |
| TAAATACGTTCAAGAAACTT+GGG | 0.514172 | 8.2:-2181190 | MS.gene61983:CDS |
| AGGCCGATGTTGATGGAAAA+GGG | 0.519066 | 8.2:-2180760 | MS.gene61983:CDS |
| TCACATCCGTCTCTCATCCA+CGG | 0.523499 | 8.2:+2181272 | None:intergenic |
| ATCTAGAATGAAACAATTCA+GGG | 0.529819 | 8.2:-2181216 | MS.gene61983:CDS |
| AATAAAGGAAATAGTTTCTG+AGG | 0.544625 | 8.2:-2180148 | MS.gene61983:CDS |
| TGAAGAATTGAAGACAGGCT+TGG | 0.546517 | 8.2:-2180907 | MS.gene61983:CDS |
| GAGACTGCATTGACAAAGCA+TGG | 0.555694 | 8.2:-2180189 | MS.gene61983:CDS |
| ACCTGTGAAGAATTGAAGAC+AGG | 0.557454 | 8.2:-2180912 | MS.gene61983:CDS |
| GGATGGGAAAATAAACTATG+AGG | 0.576086 | 8.2:-2180035 | MS.gene61983:CDS |
| ACTATTGAATGCCATATTGG+AGG | 0.579173 | 8.2:-2182132 | MS.gene61983:CDS |
| CTGTCTGATATTGATGGCCA+TGG | 0.583090 | 8.2:+2182086 | None:intergenic |
| AGATTTAAAATACTGGTCCC+TGG | 0.583132 | 8.2:+2179978 | None:intergenic |
| GGAAGAGGTTAAAGATCTCA+AGG | 0.583617 | 8.2:-2180976 | MS.gene61983:CDS |
| ATTATCAATCAGTTTATCAG+AGG | 0.586571 | 8.2:+2181247 | None:intergenic |
| CTATTGAATGCCATATTGGA+GGG | 0.590578 | 8.2:-2182131 | MS.gene61983:CDS |
| TCATATCGGCTGCAATGCAT+AGG | 0.592481 | 8.2:-2180718 | MS.gene61983:CDS |
| TAAAATACTGGTCCCTGGTG+TGG | 0.592873 | 8.2:+2179983 | None:intergenic |
| GAGAAGTGTAATGCCACACC+AGG | 0.597205 | 8.2:-2179996 | MS.gene61983:CDS |
| TTGTTTGGCAAGAACACCCG+TGG | 0.622577 | 8.2:-2181289 | MS.gene61983:intron |
| TTGACTTAGTGAGTGAGCCA+TGG | 0.629803 | 8.2:-2182103 | MS.gene61983:CDS |
| GCGAGATGAACATATTCTCA+AGG | 0.633684 | 8.2:-2180684 | MS.gene61983:CDS |
| GAACACCCGTGGATGAGAGA+CGG | 0.635382 | 8.2:-2181278 | MS.gene61983:CDS |
| GGACAGGCATATTACTAGAG+AGG | 0.651658 | 8.2:-2180217 | MS.gene61983:intron |
| GGTTATGGCTGAAAATATAG+CGG | 0.672929 | 8.2:-2180997 | MS.gene61983:CDS |
| AAAGCATGGAATAGTTGACG+AGG | 0.717011 | 8.2:-2180175 | MS.gene61983:CDS |
| AGAAGTGTAATGCCACACCA+GGG | 0.751648 | 8.2:-2179995 | MS.gene61983:CDS |
| AATATGGACACTGATCGTAG+TGG | 0.763896 | 8.2:-2180942 | MS.gene61983:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTGTATAAATAACAA+TGG | + | chr8.2:2180220-2180239 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATGGTTTTGTTA+TGG | + | chr8.2:2181693-2181712 | None:intergenic | 15.0% |
| !!! | ATTTTGAACTCATTTATTAT+AGG | - | chr8.2:2180426-2180445 | MS.gene61983:intron | 15.0% |
| !! | AAAATATTAAATTATGGCAG+AGG | - | chr8.2:2181861-2181880 | MS.gene61983:intron | 20.0% |
| !! | ATATATCCAAAAATATAAGC+CGG | + | chr8.2:2181077-2181096 | None:intergenic | 20.0% |
| !! | ATATCATTTCTGTATTAAAC+TGG | - | chr8.2:2181748-2181767 | MS.gene61983:intron | 20.0% |
| !! | ATTACAATTGAAGTTATTTG+AGG | + | chr8.2:2180170-2180189 | None:intergenic | 20.0% |
| !! | TATGGATTTATAACTACTTA+CGG | + | chr8.2:2181267-2181286 | None:intergenic | 20.0% |
| !! | TTAATCAGGAAAATCTATTA+CGG | - | chr8.2:2182032-2182051 | MS.gene61983:CDS | 20.0% |
| !! | TTACAGAGTTAATTAAACAA+TGG | - | chr8.2:2181826-2181845 | MS.gene61983:intron | 20.0% |
| !!! | TAGATTTTCCTGATTAATAT+AGG | + | chr8.2:2182029-2182048 | None:intergenic | 20.0% |
| !!! | TGTTACTATCATATACTTTT+CGG | + | chr8.2:2181595-2181614 | None:intergenic | 20.0% |
| !!! | TTACTTTGTACTTCTAAAAA+CGG | - | chr8.2:2180368-2180387 | MS.gene61983:intron | 20.0% |
| !!! | TTTAGTTAATAACAGTTTTG+TGG | + | chr8.2:2180739-2180758 | None:intergenic | 20.0% |
| ! | AAGGGGAAAGAAAAAAAAAA+TGG | + | chr8.2:2181704-2181723 | None:intergenic | 25.0% |
| ! | AAGTTACTCCTATATTAATC+AGG | - | chr8.2:2182018-2182037 | MS.gene61983:CDS | 25.0% |
| ! | AATAAAGGAAATAGTTTCTG+AGG | - | chr8.2:2181979-2181998 | MS.gene61983:intron | 25.0% |
| ! | ACTACTAGATAGTATATGAT+TGG | - | chr8.2:2181557-2181576 | MS.gene61983:intron | 25.0% |
| ! | ATTATCAATCAGTTTATCAG+AGG | + | chr8.2:2180883-2180902 | None:intergenic | 25.0% |
| ! | TAAATACGTTCAAGAAACTT+GGG | - | chr8.2:2180937-2180956 | MS.gene61983:CDS | 25.0% |
| ! | TAATCAGGAAAATCTATTAC+GGG | - | chr8.2:2182033-2182052 | MS.gene61983:CDS | 25.0% |
| ! | TGACTATCTTGAATTCATAT+CGG | - | chr8.2:2181395-2181414 | MS.gene61983:intron | 25.0% |
| ! | TGGATTTGTCAAAATACAAA+TGG | + | chr8.2:2181673-2181692 | None:intergenic | 25.0% |
| ! | TTAAATACGTTCAAGAAACT+TGG | - | chr8.2:2180936-2180955 | MS.gene61983:CDS | 25.0% |
| ! | TTAGAAGTAATTCTCTTCTT+TGG | + | chr8.2:2180104-2180123 | None:intergenic | 25.0% |
| ! | TTGTCAAAATACAAATGGTT+TGG | + | chr8.2:2181668-2181687 | None:intergenic | 25.0% |
| ! | TTTATATATTCCTAACCTCA+GGG | - | chr8.2:2181788-2181807 | MS.gene61983:intron | 25.0% |
| !! | ATCTAGAATGAAACAATTCA+GGG | - | chr8.2:2180911-2180930 | MS.gene61983:CDS | 25.0% |
| !! | GTTACTATCATATACTTTTC+GGG | + | chr8.2:2181594-2181613 | None:intergenic | 25.0% |
| !! | TATCTAGAATGAAACAATTC+AGG | - | chr8.2:2180910-2180929 | MS.gene61983:CDS | 25.0% |
| !! | TCTAACTTTTCTATTACACA+TGG | - | chr8.2:2180796-2180815 | MS.gene61983:intron | 25.0% |
| !!! | AAACTGGATTAGTTTACTTT+AGG | - | chr8.2:2181764-2181783 | MS.gene61983:intron | 25.0% |
| !!! | AACTGGATTAGTTTACTTTA+GGG | - | chr8.2:2181765-2181784 | MS.gene61983:intron | 25.0% |
| !!! | ACAAATGGTTTGGATTTTTT+CGG | + | chr8.2:2181658-2181677 | None:intergenic | 25.0% |
| !!! | ACTGTGGATAATAATTTGTT+TGG | - | chr8.2:2180823-2180842 | MS.gene61983:intron | 25.0% |
| !!! | ACTTTTTGAGTTACATATAC+CGG | - | chr8.2:2181055-2181074 | MS.gene61983:intron | 25.0% |
| !!! | ATTTTGATAAAGACAGTAGT+GGG | - | chr8.2:2181475-2181494 | MS.gene61983:intron | 25.0% |
| !!! | CTAGACTACTGTTTTTAATT+TGG | - | chr8.2:2180138-2180157 | MS.gene61983:CDS | 25.0% |
| !!! | TATTTTGATAAAGACAGTAG+TGG | - | chr8.2:2181474-2181493 | MS.gene61983:intron | 25.0% |
| !!! | TCATCTTGCTATACTTTTTT+AGG | + | chr8.2:2180565-2180584 | None:intergenic | 25.0% |
| AACTTAGTGGAAATTTCTCT+AGG | - | chr8.2:2181109-2181128 | MS.gene61983:intron | 30.0% | |
| ACAAATTATTATCCACAGTC+AGG | + | chr8.2:2180822-2180841 | None:intergenic | 30.0% | |
| ATTACTTCTAAACAAGTCCT+TGG | - | chr8.2:2180113-2180132 | MS.gene61983:intron | 30.0% | |
| CAAGGAAACGTTTGAAAATA+TGG | - | chr8.2:2181169-2181188 | MS.gene61983:intron | 30.0% | |
| CTGATGATTCTTAAACTAAC+AGG | - | chr8.2:2182071-2182090 | MS.gene61983:CDS | 30.0% | |
| GAAAGCTTCAAATGAGAAAT+TGG | + | chr8.2:2180627-2180646 | None:intergenic | 30.0% | |
| GATTCTTAAACTAACAGGAT+GGG | - | chr8.2:2182076-2182095 | MS.gene61983:CDS | 30.0% | |
| GTTTATATATTCCTAACCTC+AGG | - | chr8.2:2181787-2181806 | MS.gene61983:intron | 30.0% | |
| TAGAGAAATTTCCACTAAGT+TGG | + | chr8.2:2181110-2181129 | None:intergenic | 30.0% | |
| TAGTTCAAACACAAATGGTT+TGG | + | chr8.2:2181541-2181560 | None:intergenic | 30.0% | |
| TCTAGTAGTTCAAACACAAA+TGG | + | chr8.2:2181546-2181565 | None:intergenic | 30.0% | |
| TGATTCTTAAACTAACAGGA+TGG | - | chr8.2:2182075-2182094 | MS.gene61983:CDS | 30.0% | |
| TTATATATTCCTAACCTCAG+GGG | - | chr8.2:2181789-2181808 | MS.gene61983:intron | 30.0% | |
| ! | AACATATTCTCAAGGCATTT+CGG | - | chr8.2:2181451-2181470 | MS.gene61983:intron | 30.0% |
| ! | AACTAGTCATGCTTTTGTTA+TGG | + | chr8.2:2181285-2181304 | None:intergenic | 30.0% |
| ! | CATTGATTGCTTAGATTAGA+TGG | - | chr8.2:2180989-2181008 | MS.gene61983:CDS | 30.0% |
| ! | CATTTGCTTCTTTGATTTCA+CGG | - | chr8.2:2181889-2181908 | MS.gene61983:intron | 30.0% |
| !! | AATTTCCACTAAGTTGGTAA+TGG | + | chr8.2:2181104-2181123 | None:intergenic | 30.0% |
| !! | CAAATGGTTTGGATCTTTTT+CGG | + | chr8.2:2181530-2181549 | None:intergenic | 30.0% |
| !!! | CAAATGGTTTGGATTTTTTC+GGG | + | chr8.2:2181657-2181676 | None:intergenic | 30.0% |
| !!! | CATATACCGGCTTATATTTT+TGG | - | chr8.2:2181068-2181087 | MS.gene61983:intron | 30.0% |
| AAAACAGTAGTCTAGTACCA+AGG | + | chr8.2:2180133-2180152 | None:intergenic | 35.0% | |
| ACTATTGAATGCCATATTGG+AGG | - | chr8.2:2179995-2180014 | MS.gene61983:CDS | 35.0% | |
| AGTTGACGAGGCAAAAATAA+AGG | - | chr8.2:2181964-2181983 | MS.gene61983:intron | 35.0% | |
| ATATACTCTCCATAGAGAAG+GGG | + | chr8.2:2181721-2181740 | None:intergenic | 35.0% | |
| CAGTATGTACTACAATGCTT+GGG | + | chr8.2:2180314-2180333 | None:intergenic | 35.0% | |
| CATATACTCTCCATAGAGAA+GGG | + | chr8.2:2181722-2181741 | None:intergenic | 35.0% | |
| CGTGAAATCAAAGAAGCAAA+TGG | + | chr8.2:2181891-2181910 | None:intergenic | 35.0% | |
| CTATTGAATGCCATATTGGA+GGG | - | chr8.2:2179996-2180015 | MS.gene61983:CDS | 35.0% | |
| GCATATTACTAGAGAGGAAT+TGG | - | chr8.2:2181916-2181935 | MS.gene61983:intron | 35.0% | |
| GGATGGGAAAATAAACTATG+AGG | - | chr8.2:2182092-2182111 | MS.gene61983:CDS | 35.0% | |
| GGTTATGGCTGAAAATATAG+CGG | - | chr8.2:2181130-2181149 | MS.gene61983:intron | 35.0% | |
| GTAATTCTCTTCTTTGGATC+TGG | + | chr8.2:2180098-2180117 | None:intergenic | 35.0% | |
| GTGGAAATTTCTCTAGGTTA+TGG | - | chr8.2:2181115-2181134 | MS.gene61983:intron | 35.0% | |
| TCATATACTCTCCATAGAGA+AGG | + | chr8.2:2181723-2181742 | None:intergenic | 35.0% | |
| TGAAAGTAGCTATAACAGAC+AGG | - | chr8.2:2180709-2180728 | MS.gene61983:CDS | 35.0% | |
| TTAGCACTGTCTGATATTGA+TGG | + | chr8.2:2180050-2180069 | None:intergenic | 35.0% | |
| TTGTGTGTATAACGTTTCTC+AGG | - | chr8.2:2181347-2181366 | MS.gene61983:intron | 35.0% | |
| TTTCTCCATTACCAACTTAG+TGG | - | chr8.2:2181096-2181115 | MS.gene61983:intron | 35.0% | |
| ! | CAAGCATTGTAGTACATACT+GGG | - | chr8.2:2180313-2180332 | MS.gene61983:intron | 35.0% |
| ! | TTTTTCTTTCCCCTTCTCTA+TGG | - | chr8.2:2181709-2181728 | MS.gene61983:intron | 35.0% |
| AAAGCATGGAATAGTTGACG+AGG | - | chr8.2:2181952-2181971 | MS.gene61983:intron | 40.0% | |
| AATATGGACACTGATCGTAG+TGG | - | chr8.2:2181185-2181204 | MS.gene61983:CDS | 40.0% | |
| ACCTGTGAAGAATTGAAGAC+AGG | - | chr8.2:2181215-2181234 | MS.gene61983:CDS | 40.0% | |
| AGTACCAATCTCCATAGAGA+AGG | + | chr8.2:2181627-2181646 | None:intergenic | 40.0% | |
| CATTTCTTTCCCCTTCTCTA+TGG | - | chr8.2:2181613-2181632 | MS.gene61983:intron | 40.0% | |
| CCAGTATGTACTACAATGCT+TGG | + | chr8.2:2180315-2180334 | None:intergenic | 40.0% | |
| CTTCAATTCTTCACAGGTGA+TGG | + | chr8.2:2181213-2181232 | None:intergenic | 40.0% | |
| GCGAGATGAACATATTCTCA+AGG | - | chr8.2:2181443-2181462 | MS.gene61983:intron | 40.0% | |
| GGAAGAGGTTAAAGATCTCA+AGG | - | chr8.2:2181151-2181170 | MS.gene61983:intron | 40.0% | |
| GGGACTATTGAATGCCATAT+TGG | - | chr8.2:2179992-2180011 | MS.gene61983:CDS | 40.0% | |
| GTACCAATCTCCATAGAGAA+GGG | + | chr8.2:2181626-2181645 | None:intergenic | 40.0% | |
| TACCAATCTCCATAGAGAAG+GGG | + | chr8.2:2181625-2181644 | None:intergenic | 40.0% | |
| TGAAGAATTGAAGACAGGCT+TGG | - | chr8.2:2181220-2181239 | MS.gene61983:CDS | 40.0% | |
| ! | CAGAGTATTCATGCACATGA+TGG | + | chr8.2:2181034-2181053 | None:intergenic | 40.0% |
| ! | CCAAGCATTGTAGTACATAC+TGG | - | chr8.2:2180312-2180331 | MS.gene61983:intron | 40.0% |
| ! | TGAAGGTATGGCATGAAACA+TGG | - | chr8.2:2180961-2180980 | MS.gene61983:CDS | 40.0% |
| !! | AGAAACTTGGGTTGAAGGTA+TGG | - | chr8.2:2180949-2180968 | MS.gene61983:CDS | 40.0% |
| !! | GTTCAAGAAACTTGGGTTGA+AGG | - | chr8.2:2180944-2180963 | MS.gene61983:CDS | 40.0% |
| ATCATCCAAGTATTCCCCTG+AGG | + | chr8.2:2181806-2181825 | None:intergenic | 45.0% | |
| GCCTGTCTTCAATTCTTCAC+AGG | + | chr8.2:2181219-2181238 | None:intergenic | 45.0% | |
| GGACAGGCATATTACTAGAG+AGG | - | chr8.2:2181910-2181929 | MS.gene61983:intron | 45.0% | |
| GTCAAGTTCACCCTCCAATA+TGG | + | chr8.2:2180009-2180028 | None:intergenic | 45.0% | |
| TAAAATACTGGTCCCTGGTG+TGG | + | chr8.2:2182147-2182166 | None:intergenic | 45.0% | |
| TATTACACATGGCCTGACTG+TGG | - | chr8.2:2180807-2180826 | MS.gene61983:intron | 45.0% | |
| TTCCCCTTCTCTATGGAGAT+TGG | - | chr8.2:2181620-2181639 | MS.gene61983:intron | 45.0% | |
| TTGACTTAGTGAGTGAGCCA+TGG | - | chr8.2:2180024-2180043 | MS.gene61983:CDS | 45.0% | |
| ! | AGAAGTGTAATGCCACACCA+GGG | - | chr8.2:2182132-2182151 | MS.gene61983:CDS | 45.0% |
| ! | AGGCCGATGTTGATGGAAAA+GGG | - | chr8.2:2181367-2181386 | MS.gene61983:intron | 45.0% |
| ! | CGACCCTTTTCCATCAACAT+CGG | + | chr8.2:2181373-2181392 | None:intergenic | 45.0% |
| ! | CTGTCTGATATTGATGGCCA+TGG | + | chr8.2:2180044-2180063 | None:intergenic | 45.0% |
| ! | GAGACTGCATTGACAAAGCA+TGG | - | chr8.2:2181938-2181957 | MS.gene61983:intron | 45.0% |
| ! | GCTTCTTTGATTTCACGGAC+AGG | - | chr8.2:2181894-2181913 | MS.gene61983:intron | 45.0% |
| ! | GGCTGAAAATATAGCGGAAG+AGG | - | chr8.2:2181136-2181155 | MS.gene61983:intron | 45.0% |
| ! | GTGGGTGAGTATTGCAAGAT+TGG | - | chr8.2:2181493-2181512 | MS.gene61983:intron | 45.0% |
| ! | TCATATCGGCTGCAATGCAT+AGG | - | chr8.2:2181409-2181428 | MS.gene61983:intron | 45.0% |
| !! | ATTAATTAATTAATTAACAT+TGG | + | chr8.2:2180243-2180262 | None:intergenic | 5.0% |
| !! | TTGTTAAAAATATTAAATTA+TGG | - | chr8.2:2181855-2181874 | MS.gene61983:intron | 5.0% |
| CCAAGTATTCCCCTGAGGTT+AGG | + | chr8.2:2181801-2181820 | None:intergenic | 50.0% | |
| CCTAACCTCAGGGGAATACT+TGG | - | chr8.2:2181798-2181817 | MS.gene61983:intron | 50.0% | |
| GTTTCTCAGGCCGATGTTGA+TGG | - | chr8.2:2181360-2181379 | MS.gene61983:intron | 50.0% | |
| TCACATCCGTCTCTCATCCA+CGG | + | chr8.2:2180858-2180877 | None:intergenic | 50.0% | |
| TTGTTTGGCAAGAACACCCG+TGG | - | chr8.2:2180838-2180857 | MS.gene61983:intron | 50.0% | |
| ! | AAGACAGGCTTGGCTCGAAT+TGG | - | chr8.2:2181230-2181249 | MS.gene61983:CDS | 50.0% |
| ! | CAGGCCGATGTTGATGGAAA+AGG | - | chr8.2:2181366-2181385 | MS.gene61983:intron | 50.0% |
| ! | GAGAAGTGTAATGCCACACC+AGG | - | chr8.2:2182131-2182150 | MS.gene61983:CDS | 50.0% |
| CACATCCGTCTCTCATCCAC+GGG | + | chr8.2:2180857-2180876 | None:intergenic | 55.0% | |
| CGGCTGCAATGCATAGGTAC+AGG | - | chr8.2:2181415-2181434 | MS.gene61983:intron | 55.0% | |
| GAACACCCGTGGATGAGAGA+CGG | - | chr8.2:2180849-2180868 | MS.gene61983:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 2179982 | 2182167 | 2179982 | ID=MS.gene61983 |
| chr8.2 | mRNA | 2179982 | 2182167 | 2179982 | ID=MS.gene61983.t1;Parent=MS.gene61983 |
| chr8.2 | exon | 2182015 | 2182167 | 2182015 | ID=MS.gene61983.t1.exon1;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2182015 | 2182167 | 2182015 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| chr8.2 | exon | 2181184 | 2181299 | 2181184 | ID=MS.gene61983.t1.exon2;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2181184 | 2181299 | 2181184 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| chr8.2 | exon | 2180884 | 2181018 | 2180884 | ID=MS.gene61983.t1.exon3;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2180884 | 2181018 | 2180884 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| chr8.2 | exon | 2180653 | 2180780 | 2180653 | ID=MS.gene61983.t1.exon4;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2180653 | 2180780 | 2180653 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| chr8.2 | exon | 2180134 | 2180233 | 2180134 | ID=MS.gene61983.t1.exon5;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2180134 | 2180233 | 2180134 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| chr8.2 | exon | 2179982 | 2180056 | 2179982 | ID=MS.gene61983.t1.exon6;Parent=MS.gene61983.t1 |
| chr8.2 | CDS | 2179982 | 2180056 | 2179982 | ID=cds.MS.gene61983.t1;Parent=MS.gene61983.t1 |
| Gene Sequence |
| Protein sequence |
