Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62100.t1 | XP_003614163.1 | 60.9 | 463 | 27 | 3 | 10 | 318 | 198 | 660 | 4.50E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62100.t1 | P0C7R4 | 67.8 | 276 | 60 | 4 | 71 | 317 | 382 | 657 | 2.9e-99 | 363.2 |
| MS.gene62100.t1 | P0C7R4 | 28.7 | 136 | 80 | 3 | 10 | 129 | 198 | 332 | 1.1e-05 | 52.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62100.t1 | G7JZ42 | 60.9 | 463 | 27 | 3 | 10 | 318 | 198 | 660 | 3.3e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene62100 | 0.802589 | 5.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62100.t1 | MTR_5g045620 | 87.273 | 275 | 8 | 2 | 71 | 318 | 386 | 660 | 2.15e-170 | 488 |
| MS.gene62100.t1 | MTR_5g045620 | 25.566 | 309 | 181 | 11 | 10 | 289 | 198 | 486 | 3.63e-14 | 73.6 |
| MS.gene62100.t1 | MTR_5g044930 | 86.909 | 275 | 9 | 2 | 71 | 318 | 390 | 664 | 6.92e-170 | 487 |
| MS.gene62100.t1 | MTR_5g044930 | 25.566 | 309 | 181 | 11 | 10 | 289 | 202 | 490 | 3.06e-14 | 73.6 |
| MS.gene62100.t1 | MTR_4g081540 | 32.384 | 281 | 152 | 6 | 71 | 316 | 508 | 785 | 1.94e-43 | 159 |
| MS.gene62100.t1 | MTR_4g099200 | 26.953 | 256 | 175 | 6 | 68 | 317 | 437 | 686 | 8.59e-26 | 108 |
| MS.gene62100.t1 | MTR_1g066900 | 26.481 | 287 | 170 | 6 | 71 | 316 | 415 | 701 | 1.56e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62100.t1 | AT1G69290 | 67.754 | 276 | 60 | 4 | 71 | 317 | 382 | 657 | 3.66e-129 | 383 |
| MS.gene62100.t1 | AT1G68980 | 59.630 | 270 | 75 | 2 | 72 | 314 | 353 | 615 | 3.91e-108 | 328 |
| MS.gene62100.t1 | AT1G03100 | 34.643 | 280 | 148 | 6 | 71 | 317 | 516 | 793 | 4.39e-48 | 172 |
| MS.gene62100.t1 | AT3G09650 | 27.397 | 292 | 165 | 6 | 71 | 316 | 472 | 762 | 2.68e-27 | 112 |
| MS.gene62100.t1 | AT4G17616 | 27.876 | 226 | 152 | 4 | 68 | 291 | 427 | 643 | 3.35e-23 | 100 |
| MS.gene62100.t1 | AT5G65560 | 26.042 | 192 | 125 | 5 | 89 | 280 | 326 | 500 | 2.96e-13 | 70.9 |
| MS.gene62100.t1 | AT5G65560 | 26.042 | 192 | 125 | 5 | 89 | 280 | 326 | 500 | 2.96e-13 | 70.9 |
| MS.gene62100.t1 | AT5G65560 | 26.042 | 192 | 125 | 5 | 89 | 280 | 326 | 500 | 2.96e-13 | 70.9 |
Find 69 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGGCTCTGTGGGTCTT+GGG | 0.176003 | 5.1:-37901022 | MS.gene62100:CDS |
| TTGGGAGGCTCTGTGGGTCT+TGG | 0.177689 | 5.1:-37901023 | MS.gene62100:CDS |
| GGTCATTCGGCTCGAATTGC+AGG | 0.306666 | 5.1:+37900602 | None:intergenic |
| CTGAAACATATCCGTTAATC+AGG | 0.319880 | 5.1:+37900566 | None:intergenic |
| TGAAAATATTTGTTGATAAG+TGG | 0.364460 | 5.1:-37900369 | MS.gene62100:CDS |
| AACTATAATGACAGGTTTGA+TGG | 0.371868 | 5.1:-37900781 | MS.gene62100:intron |
| CTTGATAAGATGAATGCTTT+GGG | 0.377761 | 5.1:-37901041 | MS.gene62100:CDS |
| TCTTGATAAGATGAATGCTT+TGG | 0.380553 | 5.1:-37901042 | MS.gene62100:CDS |
| AGCTCAAAGTGGCCAGGTTA+AGG | 0.380872 | 5.1:-37900312 | MS.gene62100:CDS |
| GGAATGCATCAATCAGATTC+TGG | 0.383498 | 5.1:+37900458 | None:intergenic |
| GTCATGGAGATTAGTAGTTC+AGG | 0.393686 | 5.1:-37900936 | MS.gene62100:CDS |
| GACAAGTATGTCTGGTCATT+CGG | 0.398593 | 5.1:+37900589 | None:intergenic |
| AGCAGTGTTAGCAGATTTCA+TGG | 0.411520 | 5.1:+37901772 | None:intergenic |
| TGTTTCTATCAAAGCATCAT+AGG | 0.418085 | 5.1:+37900893 | None:intergenic |
| GGGAGGCTCTGTGGGTCTTG+GGG | 0.421493 | 5.1:-37901021 | MS.gene62100:CDS |
| GAGATACAAGCAAGCATTCA+TGG | 0.427867 | 5.1:-37900347 | MS.gene62100:CDS |
| ACATACTTGTCCCTGATTAA+CGG | 0.428702 | 5.1:-37900577 | MS.gene62100:CDS |
| CTCTGTTTGAAGAGAACTGC+AGG | 0.432019 | 5.1:-37901627 | MS.gene62100:intron |
| TGGTCAAATTTGATCCCCTT+CGG | 0.433100 | 5.1:+37900478 | None:intergenic |
| AACTGCGGAGGCTACTCTAT+TGG | 0.433212 | 5.1:-37900958 | MS.gene62100:CDS |
| CAGCATCAGTTACTGATTCA+AGG | 0.433228 | 5.1:+37901524 | None:intergenic |
| GTCTGCTAATTTAGCTTCTG+TGG | 0.444461 | 5.1:-37901308 | MS.gene62100:intron |
| GAGGTTAAGAGAAAGTTAGC+AGG | 0.460627 | 5.1:-37900508 | MS.gene62100:CDS |
| AATGCTTTGGGAGGCTCTGT+GGG | 0.462220 | 5.1:-37901029 | MS.gene62100:CDS |
| TTGAAGTGGGTACTCATGAT+TGG | 0.463951 | 5.1:-37900699 | MS.gene62100:CDS |
| TTTCTTAGATGAGGTGGTTG+AGG | 0.470772 | 5.1:-37900731 | MS.gene62100:CDS |
| GGTTGCCTTGGATGACATGC+TGG | 0.471152 | 5.1:-37901605 | MS.gene62100:CDS |
| TGATTCAAGGTGACAACAGC+AGG | 0.474503 | 5.1:+37901537 | None:intergenic |
| AGACCATCGACCTGAGTTGA+TGG | 0.475906 | 5.1:-37900758 | MS.gene62100:CDS |
| AGAGAACTGCAGGGTTGCCT+TGG | 0.500604 | 5.1:-37901617 | MS.gene62100:CDS |
| AGGTTAAGAGAAAGTTAGCA+GGG | 0.503999 | 5.1:-37900507 | MS.gene62100:CDS |
| GCATTACAAGCAGAAACATC+AGG | 0.511894 | 5.1:+37901571 | None:intergenic |
| TAATCAGGGACAAGTATGTC+TGG | 0.515514 | 5.1:+37900581 | None:intergenic |
| GTTAGCAGGGGATGGGCCGA+AGG | 0.520097 | 5.1:-37900494 | MS.gene62100:CDS |
| AAGAGAAAGTTAGCAGGGGA+TGG | 0.520299 | 5.1:-37900502 | MS.gene62100:CDS |
| GGCAGCTTTCTTAGATGAGG+TGG | 0.521040 | 5.1:-37900737 | MS.gene62100:CDS |
| GAATGCTTTGGGAGGCTCTG+TGG | 0.523683 | 5.1:-37901030 | MS.gene62100:CDS |
| TTGATAGAAACATCTATGTC+CGG | 0.531297 | 5.1:-37900882 | MS.gene62100:CDS |
| TAGTAGTTCAGGTCTAAAGT+TGG | 0.534004 | 5.1:-37900925 | MS.gene62100:CDS |
| CTCCCTTGACCATAGCATAC+AGG | 0.534135 | 5.1:+37900437 | None:intergenic |
| TGTAATGATGTTGTGGAATG+AGG | 0.543482 | 5.1:-37900527 | MS.gene62100:CDS |
| TTAGCAGGGGATGGGCCGAA+GGG | 0.566169 | 5.1:-37900493 | MS.gene62100:CDS |
| ATTCCTGTATGCTATGGTCA+AGG | 0.570553 | 5.1:-37900440 | MS.gene62100:CDS |
| CACCGACTGAAAGTCTTGAC+CGG | 0.576357 | 5.1:+37900863 | None:intergenic |
| TCTGCTAACACTGCTCCCGC+TGG | 0.576384 | 5.1:-37901764 | MS.gene62100:intron |
| AAGAAAGCTGCCATCAACTC+AGG | 0.577664 | 5.1:+37900748 | None:intergenic |
| AGAGAAAGTTAGCAGGGGAT+GGG | 0.579488 | 5.1:-37900501 | MS.gene62100:CDS |
| TGAGGATCCTCGTATTGAAG+TGG | 0.582306 | 5.1:-37900713 | MS.gene62100:CDS |
| AAAGTCCAGCATGTCATCCA+AGG | 0.587403 | 5.1:+37901600 | None:intergenic |
| TTCCTGTATGCTATGGTCAA+GGG | 0.590606 | 5.1:-37900439 | MS.gene62100:CDS |
| CTGCCATCAACTCAGGTCGA+TGG | 0.595893 | 5.1:+37900755 | None:intergenic |
| GATGGCAGCTTTCTTAGATG+AGG | 0.600387 | 5.1:-37900740 | MS.gene62100:CDS |
| TGATGCATTCCTGTATGCTA+TGG | 0.602058 | 5.1:-37900446 | MS.gene62100:CDS |
| ATGCAAGAAGGACTTTCAGA+AGG | 0.606405 | 5.1:-37900633 | MS.gene62100:CDS |
| TTCAGGTCTAAAGTTGGACG+TGG | 0.606771 | 5.1:-37900919 | MS.gene62100:CDS |
| GGTTAAGAGAAAGTTAGCAG+GGG | 0.610374 | 5.1:-37900506 | MS.gene62100:CDS |
| TGATGCTGTGATGCAAGTTG+TGG | 0.610490 | 5.1:-37900407 | MS.gene62100:CDS |
| GGAGGCTACTCTATTGGTCA+TGG | 0.614521 | 5.1:-37900952 | MS.gene62100:CDS |
| GGAGGCTAGAAGATGCAAGA+AGG | 0.616733 | 5.1:-37900645 | MS.gene62100:CDS |
| TAGCAGGGGATGGGCCGAAG+GGG | 0.624535 | 5.1:-37900492 | MS.gene62100:CDS |
| GAGGATCCTCGTATTGAAGT+GGG | 0.632847 | 5.1:-37900712 | MS.gene62100:CDS |
| CTGTATGCTATGGTCAAGGG+AGG | 0.634721 | 5.1:-37900436 | MS.gene62100:CDS |
| GATAAGATGAATGCTTTGGG+AGG | 0.643464 | 5.1:-37901038 | MS.gene62100:CDS |
| TCTGTTTGAAGAGAACTGCA+GGG | 0.643992 | 5.1:-37901626 | MS.gene62100:intron |
| TGAAACATATCCGTTAATCA+GGG | 0.644986 | 5.1:+37900567 | None:intergenic |
| CAAAGAGAATCGAACTGCGG+AGG | 0.652528 | 5.1:-37900970 | MS.gene62100:CDS |
| TCAGTAACTGATGCTGACAG+AGG | 0.705545 | 5.1:-37901517 | MS.gene62100:intron |
| CTGCAAAGAGAATCGAACTG+CGG | 0.726664 | 5.1:-37900973 | MS.gene62100:CDS |
| TGAGTACCCACTTCAATACG+AGG | 0.733899 | 5.1:+37900706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAACATTTATTGTTTT+TGG | + | chr5.1:37900662-37900681 | None:intergenic | 10.0% |
| !!! | TTTTATTCTAATTTGATTAG+TGG | - | chr5.1:37900676-37900695 | MS.gene62100:CDS | 15.0% |
| !! | AGATGAGCTAAAAAAAATTA+TGG | - | chr5.1:37900622-37900641 | MS.gene62100:CDS | 20.0% |
| !! | ATGAAAAGGAATGAAAAAAA+TGG | + | chr5.1:37900308-37900327 | None:intergenic | 20.0% |
| !!! | TGAAAATATTTGTTGATAAG+TGG | - | chr5.1:37901647-37901666 | MS.gene62100:intron | 20.0% |
| ! | AATTCAAAACTAAACTCATC+TGG | + | chr5.1:37900556-37900575 | None:intergenic | 25.0% |
| ! | AGTTAAGGAATATCTTCATA+AGG | - | chr5.1:37900811-37900830 | MS.gene62100:intron | 25.0% |
| ! | AGTTACTTAACTATAATGAC+AGG | - | chr5.1:37901227-37901246 | MS.gene62100:intron | 25.0% |
| ! | ATTAATGCTTGTGTTAGTAT+TGG | - | chr5.1:37900929-37900948 | MS.gene62100:CDS | 25.0% |
| ! | CTTCATAAGGGAAATATTAA+GGG | - | chr5.1:37900824-37900843 | MS.gene62100:intron | 25.0% |
| ! | GAAAAAGAATGTCAGAAAAA+TGG | - | chr5.1:37901726-37901745 | MS.gene62100:intron | 25.0% |
| ! | GAGCTAAAAAAAATTATGGT+TGG | - | chr5.1:37900626-37900645 | MS.gene62100:CDS | 25.0% |
| ! | GTTAAGGAATATCTTCATAA+GGG | - | chr5.1:37900812-37900831 | MS.gene62100:intron | 25.0% |
| ! | TCTTCATAAGGGAAATATTA+AGG | - | chr5.1:37900823-37900842 | MS.gene62100:intron | 25.0% |
| !!! | ATTTTGATGTAATGATGTTG+TGG | - | chr5.1:37901482-37901501 | MS.gene62100:intron | 25.0% |
| !!! | CACTTTTTGTTTAGTAGTTA+AGG | - | chr5.1:37900796-37900815 | MS.gene62100:intron | 25.0% |
| !!! | GCTTATTGCTTTTAAGAATT+GGG | - | chr5.1:37901753-37901772 | MS.gene62100:intron | 25.0% |
| AACTATAATGACAGGTTTGA+TGG | - | chr5.1:37901235-37901254 | MS.gene62100:intron | 30.0% | |
| ATTGGAATTATGACAAAGCT+TGG | - | chr5.1:37900523-37900542 | MS.gene62100:CDS | 30.0% | |
| ATTTATATGCACGCACTTAA+AGG | - | chr5.1:37900584-37900603 | MS.gene62100:CDS | 30.0% | |
| CTTGATAAGATGAATGCTTT+GGG | - | chr5.1:37900975-37900994 | MS.gene62100:CDS | 30.0% | |
| TCTTGATAAGATGAATGCTT+TGG | - | chr5.1:37900974-37900993 | MS.gene62100:CDS | 30.0% | |
| TGAAACATATCCGTTAATCA+GGG | + | chr5.1:37901452-37901471 | None:intergenic | 30.0% | |
| TTGATAGAAACATCTATGTC+CGG | - | chr5.1:37901134-37901153 | MS.gene62100:intron | 30.0% | |
| TTTATATGCACGCACTTAAA+GGG | - | chr5.1:37900585-37900604 | MS.gene62100:CDS | 30.0% | |
| ! | TGTTTCTATCAAAGCATCAT+AGG | + | chr5.1:37901126-37901145 | None:intergenic | 30.0% |
| ! | TTTCATTCCTTTTCATTCGT+GGG | - | chr5.1:37900312-37900331 | MS.gene62100:CDS | 30.0% |
| ! | TTTTCATTCCTTTTCATTCG+TGG | - | chr5.1:37900311-37900330 | MS.gene62100:CDS | 30.0% |
| !! | ATCAAAGTTGATGAGTCTAT+AGG | - | chr5.1:37900893-37900912 | MS.gene62100:CDS | 30.0% |
| !! | CGCTTATTGCTTTTAAGAAT+TGG | - | chr5.1:37901752-37901771 | MS.gene62100:intron | 30.0% |
| !! | TATAATCCACGCTTTTTGTA+AGG | - | chr5.1:37901345-37901364 | MS.gene62100:intron | 30.0% |
| !!! | TTGCAGTAAGCTTTTAAGAT+CGG | + | chr5.1:37901029-37901048 | None:intergenic | 30.0% |
| ACATACTTGTCCCTGATTAA+CGG | - | chr5.1:37901439-37901458 | MS.gene62100:intron | 35.0% | |
| AGGTTAAGAGAAAGTTAGCA+GGG | - | chr5.1:37901509-37901528 | MS.gene62100:intron | 35.0% | |
| CTCTTCAAACAGAGGTAAAA+AGG | + | chr5.1:37900383-37900402 | None:intergenic | 35.0% | |
| CTGAAACATATCCGTTAATC+AGG | + | chr5.1:37901453-37901472 | None:intergenic | 35.0% | |
| GACACATAAAAAGCTCAAAG+TGG | - | chr5.1:37901693-37901712 | MS.gene62100:intron | 35.0% | |
| GAGATGATGACAAAGAAGTT+TGG | - | chr5.1:37900761-37900780 | MS.gene62100:CDS | 35.0% | |
| TGTAATGATGTTGTGGAATG+AGG | - | chr5.1:37901489-37901508 | MS.gene62100:intron | 35.0% | |
| ! | GACATTCTTTTTCCTTAACC+TGG | + | chr5.1:37901719-37901738 | None:intergenic | 35.0% |
| ! | TAGTAGTTCAGGTCTAAAGT+TGG | - | chr5.1:37901091-37901110 | MS.gene62100:intron | 35.0% |
| ! | TTCATTCCTTTTCATTCGTG+GGG | - | chr5.1:37900313-37900332 | MS.gene62100:CDS | 35.0% |
| !! | ATTGCTTTTAAGAATTGGGC+TGG | - | chr5.1:37901757-37901776 | MS.gene62100:intron | 35.0% |
| !! | GTTGATGAGTCTATAGGTTT+TGG | - | chr5.1:37900899-37900918 | MS.gene62100:CDS | 35.0% |
| ATAAAAAGCTCAAAGTGGCC+AGG | - | chr5.1:37901698-37901717 | MS.gene62100:intron | 40.0% | |
| ATGCAAGAAGGACTTTCAGA+AGG | - | chr5.1:37901383-37901402 | MS.gene62100:intron | 40.0% | |
| ATTCCTGTATGCTATGGTCA+AGG | - | chr5.1:37901576-37901595 | MS.gene62100:CDS | 40.0% | |
| GACAAGTATGTCTGGTCATT+CGG | + | chr5.1:37901430-37901449 | None:intergenic | 40.0% | |
| GAGATACAAGCAAGCATTCA+TGG | - | chr5.1:37901669-37901688 | MS.gene62100:intron | 40.0% | |
| GAGGTTAAGAGAAAGTTAGC+AGG | - | chr5.1:37901508-37901527 | MS.gene62100:intron | 40.0% | |
| GCATTACAAGCAGAAACATC+AGG | + | chr5.1:37900448-37900467 | None:intergenic | 40.0% | |
| GGAATGCATCAATCAGATTC+TGG | + | chr5.1:37901561-37901580 | None:intergenic | 40.0% | |
| GGTTAAGAGAAAGTTAGCAG+GGG | - | chr5.1:37901510-37901529 | MS.gene62100:intron | 40.0% | |
| GTCATGGAGATTAGTAGTTC+AGG | - | chr5.1:37901080-37901099 | MS.gene62100:intron | 40.0% | |
| TAATCAGGGACAAGTATGTC+TGG | + | chr5.1:37901438-37901457 | None:intergenic | 40.0% | |
| TCTGACAAGTGAAAAACCAG+CGG | + | chr5.1:37900271-37900290 | None:intergenic | 40.0% | |
| TCTGTTTGAAGAGAACTGCA+GGG | - | chr5.1:37900390-37900409 | MS.gene62100:CDS | 40.0% | |
| TGATGCATTCCTGTATGCTA+TGG | - | chr5.1:37901570-37901589 | MS.gene62100:CDS | 40.0% | |
| TGGTCAAATTTGATCCCCTT+CGG | + | chr5.1:37901541-37901560 | None:intergenic | 40.0% | |
| TTCCTGTATGCTATGGTCAA+GGG | - | chr5.1:37901577-37901596 | MS.gene62100:CDS | 40.0% | |
| TTGAAGTGGGTACTCATGAT+TGG | - | chr5.1:37901317-37901336 | MS.gene62100:intron | 40.0% | |
| TTTCTTAGATGAGGTGGTTG+AGG | - | chr5.1:37901285-37901304 | MS.gene62100:CDS | 40.0% | |
| ! | CGAGGGTTCTTGATTTGAAA+GGG | - | chr5.1:37901204-37901223 | MS.gene62100:intron | 40.0% |
| ! | GATAAGATGAATGCTTTGGG+AGG | - | chr5.1:37900978-37900997 | MS.gene62100:CDS | 40.0% |
| ! | GTCTGCTAATTTAGCTTCTG+TGG | - | chr5.1:37900708-37900727 | MS.gene62100:CDS | 40.0% |
| !! | AGTCGGTGTTTTCTCTGTTT+AGG | - | chr5.1:37901168-37901187 | MS.gene62100:intron | 40.0% |
| !! | CAGCATCAGTTACTGATTCA+AGG | + | chr5.1:37900495-37900514 | None:intergenic | 40.0% |
| !! | GTCGGTGTTTTCTCTGTTTA+GGG | - | chr5.1:37901169-37901188 | MS.gene62100:intron | 40.0% |
| AAAGTCCAGCATGTCATCCA+AGG | + | chr5.1:37900419-37900438 | None:intergenic | 45.0% | |
| AAGAAAGCTGCCATCAACTC+AGG | + | chr5.1:37901271-37901290 | None:intergenic | 45.0% | |
| AAGAGAAAGTTAGCAGGGGA+TGG | - | chr5.1:37901514-37901533 | MS.gene62100:intron | 45.0% | |
| ACAGAGGTAAAAAGGCAGCA+AGG | + | chr5.1:37900375-37900394 | None:intergenic | 45.0% | |
| AGAGAAAGTTAGCAGGGGAT+GGG | - | chr5.1:37901515-37901534 | MS.gene62100:intron | 45.0% | |
| CTCTGTTTAGGGACATGAGA+GGG | - | chr5.1:37901180-37901199 | MS.gene62100:intron | 45.0% | |
| CTCTGTTTGAAGAGAACTGC+AGG | - | chr5.1:37900389-37900408 | MS.gene62100:CDS | 45.0% | |
| CTGACAAGTGAAAAACCAGC+GGG | + | chr5.1:37900270-37900289 | None:intergenic | 45.0% | |
| CTGCAAAGAGAATCGAACTG+CGG | - | chr5.1:37901043-37901062 | MS.gene62100:CDS | 45.0% | |
| CTGCAGTTCTCTTCAAACAG+AGG | + | chr5.1:37900391-37900410 | None:intergenic | 45.0% | |
| GAGGATCCTCGTATTGAAGT+GGG | - | chr5.1:37901304-37901323 | MS.gene62100:intron | 45.0% | |
| GATGGCAGCTTTCTTAGATG+AGG | - | chr5.1:37901276-37901295 | MS.gene62100:CDS | 45.0% | |
| TCAGTAACTGATGCTGACAG+AGG | - | chr5.1:37900499-37900518 | MS.gene62100:CDS | 45.0% | |
| TCTCTGTTTAGGGACATGAG+AGG | - | chr5.1:37901179-37901198 | MS.gene62100:intron | 45.0% | |
| TCTGTTTAGGGACATGAGAG+GGG | - | chr5.1:37901181-37901200 | MS.gene62100:intron | 45.0% | |
| TGAGGATCCTCGTATTGAAG+TGG | - | chr5.1:37901303-37901322 | MS.gene62100:intron | 45.0% | |
| TGAGTACCCACTTCAATACG+AGG | + | chr5.1:37901313-37901332 | None:intergenic | 45.0% | |
| TGATGCTGTGATGCAAGTTG+TGG | - | chr5.1:37901609-37901628 | MS.gene62100:CDS | 45.0% | |
| TGATTCAAGGTGACAACAGC+AGG | + | chr5.1:37900482-37900501 | None:intergenic | 45.0% | |
| ! | ACTGATGCTGACAGAGGTAT+TGG | - | chr5.1:37900505-37900524 | MS.gene62100:CDS | 45.0% |
| ! | ATTCCTTTTCATTCGTGGGG+CGG | - | chr5.1:37900316-37900335 | MS.gene62100:CDS | 45.0% |
| ! | GCGAGGGTTCTTGATTTGAA+AGG | - | chr5.1:37901203-37901222 | MS.gene62100:intron | 45.0% |
| ! | TTCAGGTCTAAAGTTGGACG+TGG | - | chr5.1:37901097-37901116 | MS.gene62100:intron | 45.0% |
| !! | ATCCACGCTTTTTGTAAGGC+TGG | - | chr5.1:37901349-37901368 | MS.gene62100:intron | 45.0% |
| !! | TCCACGCTTTTTGTAAGGCT+GGG | - | chr5.1:37901350-37901369 | MS.gene62100:intron | 45.0% |
| AACTGCGGAGGCTACTCTAT+TGG | - | chr5.1:37901058-37901077 | MS.gene62100:CDS | 50.0% | |
| AGCTCAAAGTGGCCAGGTTA+AGG | - | chr5.1:37901704-37901723 | MS.gene62100:intron | 50.0% | |
| CAAAGAGAATCGAACTGCGG+AGG | - | chr5.1:37901046-37901065 | MS.gene62100:CDS | 50.0% | |
| CTCCCTTGACCATAGCATAC+AGG | + | chr5.1:37901582-37901601 | None:intergenic | 50.0% | |
| CTGTATGCTATGGTCAAGGG+AGG | - | chr5.1:37901580-37901599 | MS.gene62100:CDS | 50.0% | |
| GGAGGCTACTCTATTGGTCA+TGG | - | chr5.1:37901064-37901083 | MS.gene62100:intron | 50.0% | |
| GGAGGCTAGAAGATGCAAGA+AGG | - | chr5.1:37901371-37901390 | MS.gene62100:intron | 50.0% | |
| GGCAGCTTTCTTAGATGAGG+TGG | - | chr5.1:37901279-37901298 | MS.gene62100:CDS | 50.0% | |
| GTCCGGTCAAGACTTTCAGT+CGG | - | chr5.1:37901151-37901170 | MS.gene62100:intron | 50.0% | |
| TCCCAGCCTTACAAAAAGCG+TGG | + | chr5.1:37901354-37901373 | None:intergenic | 50.0% | |
| ! | AGACCATCGACCTGAGTTGA+TGG | - | chr5.1:37901258-37901277 | MS.gene62100:intron | 50.0% |
| ! | CACCGACTGAAAGTCTTGAC+CGG | + | chr5.1:37901156-37901175 | None:intergenic | 50.0% |
| !! | AATGCTTTGGGAGGCTCTGT+GGG | - | chr5.1:37900987-37901006 | MS.gene62100:CDS | 50.0% |
| !! | ACGCTTTTTGTAAGGCTGGG+AGG | - | chr5.1:37901353-37901372 | MS.gene62100:intron | 50.0% |
| AGAGAACTGCAGGGTTGCCT+TGG | - | chr5.1:37900399-37900418 | MS.gene62100:CDS | 55.0% | |
| CTGCCATCAACTCAGGTCGA+TGG | + | chr5.1:37901264-37901283 | None:intergenic | 55.0% | |
| GGTTGCCTTGGATGACATGC+TGG | - | chr5.1:37900411-37900430 | MS.gene62100:CDS | 55.0% | |
| ! | GGTCATTCGGCTCGAATTGC+AGG | + | chr5.1:37901417-37901436 | None:intergenic | 55.0% |
| !! | GAATGCTTTGGGAGGCTCTG+TGG | - | chr5.1:37900986-37901005 | MS.gene62100:CDS | 55.0% |
| ACGCCGCCCCACGAATGAAA+AGG | + | chr5.1:37900322-37900341 | None:intergenic | 60.0% | |
| TAGGGACATGAGAGGGGCGA+GGG | - | chr5.1:37901187-37901206 | MS.gene62100:intron | 60.0% | |
| TCTGCTAACACTGCTCCCGC+TGG | - | chr5.1:37900252-37900271 | MS.gene62100:CDS | 60.0% | |
| TGGGAGGCTCTGTGGGTCTT+GGG | - | chr5.1:37900994-37901013 | MS.gene62100:CDS | 60.0% | |
| TTAGCAGGGGATGGGCCGAA+GGG | - | chr5.1:37901523-37901542 | MS.gene62100:CDS | 60.0% | |
| TTAGGGACATGAGAGGGGCG+AGG | - | chr5.1:37901186-37901205 | MS.gene62100:intron | 60.0% | |
| TTGGGAGGCTCTGTGGGTCT+TGG | - | chr5.1:37900993-37901012 | MS.gene62100:CDS | 60.0% | |
| GGGAGGCTCTGTGGGTCTTG+GGG | - | chr5.1:37900995-37901014 | MS.gene62100:CDS | 65.0% | |
| GTTAGCAGGGGATGGGCCGA+AGG | - | chr5.1:37901522-37901541 | MS.gene62100:CDS | 65.0% | |
| TAGCAGGGGATGGGCCGAAG+GGG | - | chr5.1:37901524-37901543 | MS.gene62100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 37900246 | 37901792 | 37900246 | ID=MS.gene62100 |
| chr5.1 | mRNA | 37900246 | 37901792 | 37900246 | ID=MS.gene62100.t1;Parent=MS.gene62100 |
| chr5.1 | exon | 37901765 | 37901792 | 37901765 | ID=MS.gene62100.t1.exon1;Parent=MS.gene62100.t1 |
| chr5.1 | CDS | 37901765 | 37901792 | 37901765 | ID=cds.MS.gene62100.t1;Parent=MS.gene62100.t1 |
| chr5.1 | exon | 37901518 | 37901637 | 37901518 | ID=MS.gene62100.t1.exon2;Parent=MS.gene62100.t1 |
| chr5.1 | CDS | 37901518 | 37901637 | 37901518 | ID=cds.MS.gene62100.t1;Parent=MS.gene62100.t1 |
| chr5.1 | exon | 37901261 | 37901316 | 37901261 | ID=MS.gene62100.t1.exon3;Parent=MS.gene62100.t1 |
| chr5.1 | CDS | 37901261 | 37901316 | 37901261 | ID=cds.MS.gene62100.t1;Parent=MS.gene62100.t1 |
| chr5.1 | exon | 37900870 | 37901078 | 37900870 | ID=MS.gene62100.t1.exon4;Parent=MS.gene62100.t1 |
| chr5.1 | CDS | 37900870 | 37901078 | 37900870 | ID=cds.MS.gene62100.t1;Parent=MS.gene62100.t1 |
| chr5.1 | exon | 37900246 | 37900789 | 37900246 | ID=MS.gene62100.t1.exon5;Parent=MS.gene62100.t1 |
| chr5.1 | CDS | 37900246 | 37900789 | 37900246 | ID=cds.MS.gene62100.t1;Parent=MS.gene62100.t1 |
| Gene Sequence |
| Protein sequence |
