Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62615.t1 | XP_003631077.1 | 93.1 | 335 | 17 | 4 | 1 | 329 | 1 | 335 | 9.10E-172 | 612.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62615.t1 | Q9SUC9 | 37.5 | 325 | 172 | 7 | 10 | 327 | 4 | 304 | 8.3e-49 | 195.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62615.t1 | Q1SN14 | 93.1 | 335 | 17 | 4 | 1 | 329 | 1 | 335 | 6.5e-172 | 612.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050324 | MS.gene62615 | 0.811208 | 7.85E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62615.t1 | MTR_8g106870 | 95.224 | 335 | 10 | 4 | 1 | 329 | 1 | 335 | 0.0 | 636 |
MS.gene62615.t1 | MTR_0110s0010 | 65.385 | 312 | 95 | 5 | 1 | 305 | 3 | 308 | 2.99e-135 | 387 |
MS.gene62615.t1 | MTR_2g047975 | 38.944 | 303 | 148 | 10 | 34 | 320 | 28 | 309 | 3.96e-61 | 198 |
MS.gene62615.t1 | MTR_4g051000 | 38.284 | 303 | 152 | 8 | 39 | 329 | 19 | 298 | 6.82e-58 | 189 |
MS.gene62615.t1 | MTR_2g089530 | 38.284 | 303 | 152 | 8 | 39 | 329 | 19 | 298 | 6.82e-58 | 189 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62615.t1 | AT3G18050 | 55.060 | 336 | 113 | 10 | 12 | 329 | 11 | 326 | 5.77e-108 | 318 |
MS.gene62615.t1 | AT4G28100 | 41.328 | 271 | 129 | 6 | 33 | 296 | 26 | 273 | 3.35e-62 | 200 |
Find 70 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAACATGTGAGAGTGATTT+AGG | 0.207603 | 4.2:+549642 | MS.gene62615:CDS |
GGAAAGGCTTTGAAAGTTAG+AGG | 0.231279 | 4.2:+549663 | MS.gene62615:CDS |
TGTTCATCTGAGAGACTTAA+AGG | 0.251190 | 4.2:-549426 | None:intergenic |
TAACAAAGATTGTGAACTAA+TGG | 0.293284 | 4.2:+550918 | MS.gene62615:CDS |
GAATGAACAAGATGAGAATA+AGG | 0.299598 | 4.2:-549281 | None:intergenic |
ACAATCTTTGTTATGGATCT+TGG | 0.301361 | 4.2:-550908 | None:intergenic |
TCATTTAAACTTAATCATAA+TGG | 0.319467 | 4.2:+549771 | MS.gene62615:CDS |
CTTACATTCACACGGTTACT+TGG | 0.323135 | 4.2:+550974 | MS.gene62615:CDS |
ATCATAATGGAAATCTTGTT+GGG | 0.350569 | 4.2:+549784 | MS.gene62615:CDS |
AATCATGTCAATGGATTTCC+TGG | 0.353522 | 4.2:+549852 | MS.gene62615:CDS |
TTTATTGCTATTGTGGTATT+AGG | 0.367793 | 4.2:+549724 | MS.gene62615:CDS |
TTAGTTCACAATCTTTGTTA+TGG | 0.370896 | 4.2:-550915 | None:intergenic |
GCTTACTCTGCCACTGCTCT+TGG | 0.375981 | 4.2:+549561 | MS.gene62615:CDS |
CTTGCAACATCAGCTTGTTC+AGG | 0.386076 | 4.2:-549399 | None:intergenic |
AATCATAATGGAAATCTTGT+TGG | 0.388039 | 4.2:+549783 | MS.gene62615:CDS |
GGTATTGTTCCTTGTGAAGA+TGG | 0.398280 | 4.2:-549369 | None:intergenic |
ACTGTTGCTGCATCAGGTAT+AGG | 0.404077 | 4.2:-549327 | None:intergenic |
CTGTTGCTGCATCAGGTATA+GGG | 0.413282 | 4.2:-549326 | None:intergenic |
AAGTAAAGATTGGTGCTTTG+AGG | 0.419197 | 4.2:-551119 | None:intergenic |
CATGGCTTCTTGCTAAGAAT+AGG | 0.421289 | 4.2:+550947 | MS.gene62615:CDS |
GTTCCTTGTGAAGATGGATT+TGG | 0.422036 | 4.2:-549363 | None:intergenic |
GTGCTTGCATAGCCTCTATT+CGG | 0.425995 | 4.2:+549893 | MS.gene62615:CDS |
AACAAAGATTGTGAACTAAT+GGG | 0.434872 | 4.2:+550919 | MS.gene62615:CDS |
AGTAGCAGCAATCATGTCAA+TGG | 0.437121 | 4.2:+549843 | MS.gene62615:CDS |
TACTCTGCCACTGCTCTTGG+TGG | 0.440680 | 4.2:+549564 | MS.gene62615:CDS |
GGTTGAACTGTTGCTGCATC+AGG | 0.446546 | 4.2:-549333 | None:intergenic |
ACTACATCACAAGTCTCATT+AGG | 0.447869 | 4.2:-549702 | None:intergenic |
CTCTCAGATGAACACTTCAA+TGG | 0.470119 | 4.2:+549435 | MS.gene62615:CDS |
AATAACAAAGAAGTAAAGAT+TGG | 0.476661 | 4.2:-551129 | None:intergenic |
GATTGTGGGTCAGATCCATC+AGG | 0.479917 | 4.2:-551021 | None:intergenic |
ACTTCAAATTCAAGCAAACT+AGG | 0.488204 | 4.2:+550874 | MS.gene62615:CDS |
AATGAACAAGATGAGAATAA+GGG | 0.491485 | 4.2:-549280 | None:intergenic |
TCACATGTTTCAGAATCATC+TGG | 0.492036 | 4.2:-549630 | None:intergenic |
TGGTAACAGAGGCATATCAT+AGG | 0.506933 | 4.2:-549610 | None:intergenic |
GGATGAAAGTGTGAAGAGAT+TGG | 0.507872 | 4.2:+549806 | MS.gene62615:CDS |
TATAGCCACGCAGCTAGAGC+AGG | 0.509522 | 4.2:-549534 | None:intergenic |
GAAAGGCTTTGAAAGTTAGA+GGG | 0.511723 | 4.2:+549664 | MS.gene62615:CDS |
GATGTAGTTTATTGCTATTG+TGG | 0.512189 | 4.2:+549717 | MS.gene62615:CDS |
TATTAAGAGTGCATGATTGT+GGG | 0.526493 | 4.2:-551035 | None:intergenic |
ACATAAAACTAACCGAATAG+AGG | 0.527430 | 4.2:-549905 | None:intergenic |
GTTCATCTGAGAGACTTAAA+GGG | 0.530502 | 4.2:-549425 | None:intergenic |
GCTTTGATGTTGAGCCCTGA+TGG | 0.531610 | 4.2:+551006 | MS.gene62615:CDS |
TTACATTCACACGGTTACTT+GGG | 0.542923 | 4.2:+550975 | MS.gene62615:CDS |
GTCAATGGATTTCCTGGTCT+AGG | 0.547617 | 4.2:+549858 | MS.gene62615:CDS |
TCATGCACTCTTAATAGTGA+TGG | 0.547682 | 4.2:+551042 | MS.gene62615:CDS |
CAGGACAACATCTGCTACGG+TGG | 0.552587 | 4.2:-549515 | None:intergenic |
CTATTAAGAGTGCATGATTG+TGG | 0.554864 | 4.2:-551036 | None:intergenic |
AACATCAGCTTGTTCAGGAA+AGG | 0.557995 | 4.2:-549394 | None:intergenic |
TCAGCTTGTTCAGGAAAGGC+AGG | 0.562858 | 4.2:-549390 | None:intergenic |
TCAGAAGAATCAACAGCAAG+AGG | 0.565150 | 4.2:-551069 | None:intergenic |
GCTCTTGGTGGATTTGAACA+TGG | 0.566075 | 4.2:+549576 | MS.gene62615:CDS |
GATAATAGAATGAAATGCAT+AGG | 0.568060 | 4.2:-551159 | None:intergenic |
GAAGATGGATTTGGTGTGAG+TGG | 0.572672 | 4.2:-549354 | None:intergenic |
ATGTGAGAGTGATTTAGGAA+AGG | 0.580775 | 4.2:+549647 | MS.gene62615:CDS |
GCTGCATCAGGTATAGGGAT+AGG | 0.583191 | 4.2:-549321 | None:intergenic |
ATAGGTAGAGACAGATAGCA+AGG | 0.586691 | 4.2:-549303 | None:intergenic |
AATGGATTTCCTGGTCTAGG+AGG | 0.590799 | 4.2:+549861 | MS.gene62615:CDS |
AATGATTCAGAACAGCTCAA+AGG | 0.601998 | 4.2:-549753 | None:intergenic |
GAGCAGGACAACATCTGCTA+CGG | 0.610969 | 4.2:-549518 | None:intergenic |
TTCAAATCCACCAAGAGCAG+TGG | 0.614427 | 4.2:-549571 | None:intergenic |
AGAATAAGGGTATTGAAACA+TGG | 0.620891 | 4.2:-549267 | None:intergenic |
TCATAATGGAAATCTTGTTG+GGG | 0.624389 | 4.2:+549785 | MS.gene62615:CDS |
AGTTCTAAATCTAACAAACA+TGG | 0.637715 | 4.2:+549474 | MS.gene62615:CDS |
TCAGAATCATCTGGTAACAG+AGG | 0.645064 | 4.2:-549621 | None:intergenic |
TTAGAGCAACCTCCTAGACC+AGG | 0.653397 | 4.2:-549870 | None:intergenic |
GTGAACTAATGGGATTAACA+TGG | 0.655318 | 4.2:+550929 | MS.gene62615:CDS |
ATTGTGGGTCAGATCCATCA+GGG | 0.665448 | 4.2:-551020 | None:intergenic |
TAGGACAGCTTACATTCACA+CGG | 0.684791 | 4.2:+550966 | MS.gene62615:CDS |
GTTGTCCTGCTCTAGCTGCG+TGG | 0.696100 | 4.2:+549529 | MS.gene62615:CDS |
ACACCAAATCCATCTTCACA+AGG | 0.698474 | 4.2:+549360 | MS.gene62615:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAGAGAAAAAAAATTT+AGG | - | chr4.2:550255-550274 | None:intergenic | 10.0% |
!! | AAATAGAGAAAAAAAATTTA+GGG | - | chr4.2:550254-550273 | None:intergenic | 10.0% |
!! | AATAGAGAAAAAAAATTTAG+GGG | - | chr4.2:550253-550272 | None:intergenic | 15.0% |
!! | TCATTTAAACTTAATCATAA+TGG | + | chr4.2:549771-549790 | MS.gene62615:CDS | 15.0% |
!! | AAAAAACAAGTACATAAGAA+TGG | - | chr4.2:549953-549972 | None:intergenic | 20.0% |
!! | AATAACAAAGAAGTAAAGAT+TGG | - | chr4.2:551132-551151 | None:intergenic | 20.0% |
!! | ATGTTATCTTAGAAAATAGA+TGG | - | chr4.2:550678-550697 | None:intergenic | 20.0% |
!! | TGTTATCTTAGAAAATAGAT+GGG | - | chr4.2:550677-550696 | None:intergenic | 20.0% |
!! | TTTGGCATAATAAATATGTT+TGG | - | chr4.2:550773-550792 | None:intergenic | 20.0% |
!!! | CTTGTTTTTTTGAAATTTGA+TGG | + | chr4.2:549963-549982 | MS.gene62615:intron | 20.0% |
!!! | TTTGACTATTTTTCAATGAA+TGG | + | chr4.2:550734-550753 | MS.gene62615:intron | 20.0% |
! | AAATGAATGTCTTCAAATCA+AGG | + | chr4.2:550142-550161 | MS.gene62615:intron | 25.0% |
! | AACAAAGATTGTGAACTAAT+GGG | + | chr4.2:550919-550938 | MS.gene62615:CDS | 25.0% |
! | AATGAACAAGATGAGAATAA+GGG | - | chr4.2:549283-549302 | None:intergenic | 25.0% |
! | AATTAAACTTACATCATGCT+TGG | + | chr4.2:550011-550030 | MS.gene62615:intron | 25.0% |
! | CACTAATACAATACAACTAA+TGG | - | chr4.2:550107-550126 | None:intergenic | 25.0% |
! | GATAATAGAATGAAATGCAT+AGG | - | chr4.2:551162-551181 | None:intergenic | 25.0% |
! | GATTTAATAGCAGAACATTA+TGG | - | chr4.2:550639-550658 | None:intergenic | 25.0% |
! | TAACAAAGATTGTGAACTAA+TGG | + | chr4.2:550918-550937 | MS.gene62615:CDS | 25.0% |
! | TTAGTTCACAATCTTTGTTA+TGG | - | chr4.2:550918-550937 | None:intergenic | 25.0% |
!! | AATCATAATGGAAATCTTGT+TGG | + | chr4.2:549783-549802 | MS.gene62615:CDS | 25.0% |
!! | ATCATAATGGAAATCTTGTT+GGG | + | chr4.2:549784-549803 | MS.gene62615:CDS | 25.0% |
!! | CTTTTAACCTTTCTTTACTT+TGG | + | chr4.2:550050-550069 | MS.gene62615:intron | 25.0% |
!! | TGAAGACATTCATTTTACTA+TGG | - | chr4.2:550137-550156 | None:intergenic | 25.0% |
!! | TTTATTGCTATTGTGGTATT+AGG | + | chr4.2:549724-549743 | MS.gene62615:CDS | 25.0% |
!!! | AGTTCTAAATCTAACAAACA+TGG | + | chr4.2:549474-549493 | MS.gene62615:CDS | 25.0% |
AAGAACGATAAATCCAAATG+TGG | - | chr4.2:550436-550455 | None:intergenic | 30.0% | |
AAGTAGGAAATGTGAATTAG+AGG | - | chr4.2:550377-550396 | None:intergenic | 30.0% | |
ACATAAAACTAACCGAATAG+AGG | - | chr4.2:549908-549927 | None:intergenic | 30.0% | |
ACTACAAGTACAAACACAAA+TGG | - | chr4.2:550224-550243 | None:intergenic | 30.0% | |
ACTTCAAATTCAAGCAAACT+AGG | + | chr4.2:550874-550893 | MS.gene62615:CDS | 30.0% | |
AGAGAAAAAAAATTTAGGGG+AGG | - | chr4.2:550250-550269 | None:intergenic | 30.0% | |
AGTAGGAAATGTGAATTAGA+GGG | - | chr4.2:550376-550395 | None:intergenic | 30.0% | |
CTTAGAAAATAGATGGGAAT+CGG | - | chr4.2:550671-550690 | None:intergenic | 30.0% | |
GAATGAACAAGATGAGAATA+AGG | - | chr4.2:549284-549303 | None:intergenic | 30.0% | |
TAACCTTTCTTTACTTTGGA+GGG | + | chr4.2:550054-550073 | MS.gene62615:intron | 30.0% | |
TTAACCTTTCTTTACTTTGG+AGG | + | chr4.2:550053-550072 | MS.gene62615:intron | 30.0% | |
TTAGAAAATAGATGGGAATC+GGG | - | chr4.2:550670-550689 | None:intergenic | 30.0% | |
TTCCAATAACTGAGTTAAGT+AGG | - | chr4.2:550393-550412 | None:intergenic | 30.0% | |
TTCCTACTTAACTCAGTTAT+TGG | + | chr4.2:550388-550407 | MS.gene62615:intron | 30.0% | |
! | ACAATCTTTGTTATGGATCT+TGG | - | chr4.2:550911-550930 | None:intergenic | 30.0% |
! | GATGTAGTTTATTGCTATTG+TGG | + | chr4.2:549717-549736 | MS.gene62615:CDS | 30.0% |
! | TATTAAGAGTGCATGATTGT+GGG | - | chr4.2:551038-551057 | None:intergenic | 30.0% |
! | TCATAATGGAAATCTTGTTG+GGG | + | chr4.2:549785-549804 | MS.gene62615:CDS | 30.0% |
! | TTACATCATGCTTGGTAATT+GGG | + | chr4.2:550019-550038 | MS.gene62615:intron | 30.0% |
!! | AGAATAAGGGTATTGAAACA+TGG | - | chr4.2:549270-549289 | None:intergenic | 30.0% |
!!! | TTAACTTTTTCAATTCACCG+TGG | + | chr4.2:550276-550295 | MS.gene62615:intron | 30.0% |
AATGATTCAGAACAGCTCAA+AGG | - | chr4.2:549756-549775 | None:intergenic | 35.0% | |
ACTACATCACAAGTCTCATT+AGG | - | chr4.2:549705-549724 | None:intergenic | 35.0% | |
AGCCAAATATGTGTTCTTGA+TGG | + | chr4.2:550705-550724 | MS.gene62615:intron | 35.0% | |
ATGTGAGAGTGATTTAGGAA+AGG | + | chr4.2:549647-549666 | MS.gene62615:CDS | 35.0% | |
ATTAGTGATTGTGGCATGTT+TGG | - | chr4.2:550304-550323 | None:intergenic | 35.0% | |
CAAACCATCATTAGTGATTG+TGG | - | chr4.2:550313-550332 | None:intergenic | 35.0% | |
CACAATCACTAATGATGGTT+TGG | + | chr4.2:550311-550330 | MS.gene62615:intron | 35.0% | |
CACCATCAAGAACACATATT+TGG | - | chr4.2:550710-550729 | None:intergenic | 35.0% | |
GAAACATGTGAGAGTGATTT+AGG | + | chr4.2:549642-549661 | MS.gene62615:CDS | 35.0% | |
GTAGGAAATGTGAATTAGAG+GGG | - | chr4.2:550375-550394 | None:intergenic | 35.0% | |
GTGAACTAATGGGATTAACA+TGG | + | chr4.2:550929-550948 | MS.gene62615:CDS | 35.0% | |
GTTCATCTGAGAGACTTAAA+GGG | - | chr4.2:549428-549447 | None:intergenic | 35.0% | |
TATCCCTCCAAAGTAAAGAA+AGG | - | chr4.2:550060-550079 | None:intergenic | 35.0% | |
TCACATGTTTCAGAATCATC+TGG | - | chr4.2:549633-549652 | None:intergenic | 35.0% | |
TCATGCACTCTTAATAGTGA+TGG | + | chr4.2:551042-551061 | MS.gene62615:CDS | 35.0% | |
TGTTCATCTGAGAGACTTAA+AGG | - | chr4.2:549429-549448 | None:intergenic | 35.0% | |
TTACATTCACACGGTTACTT+GGG | + | chr4.2:550975-550994 | MS.gene62615:CDS | 35.0% | |
! | AAGTAAAGATTGGTGCTTTG+AGG | - | chr4.2:551122-551141 | None:intergenic | 35.0% |
! | AATCATGTCAATGGATTTCC+TGG | + | chr4.2:549852-549871 | MS.gene62615:CDS | 35.0% |
! | ACAGAAACAGCACTTACTTT+TGG | - | chr4.2:550791-550810 | None:intergenic | 35.0% |
! | CTATTAAGAGTGCATGATTG+TGG | - | chr4.2:551039-551058 | None:intergenic | 35.0% |
! | CTTACATCATGCTTGGTAAT+TGG | + | chr4.2:550018-550037 | MS.gene62615:intron | 35.0% |
! | TACATCATGCTTGGTAATTG+GGG | + | chr4.2:550020-550039 | MS.gene62615:intron | 35.0% |
!! | GAAAGGCTTTGAAAGTTAGA+GGG | + | chr4.2:549664-549683 | MS.gene62615:CDS | 35.0% |
ACAACATCTGTAGCCACATT+TGG | + | chr4.2:550420-550439 | MS.gene62615:intron | 40.0% | |
ACACCAAATCCATCTTCACA+AGG | + | chr4.2:549360-549379 | MS.gene62615:CDS | 40.0% | |
AGTAGCAGCAATCATGTCAA+TGG | + | chr4.2:549843-549862 | MS.gene62615:CDS | 40.0% | |
ATAGGTAGAGACAGATAGCA+AGG | - | chr4.2:549306-549325 | None:intergenic | 40.0% | |
CATGCCACAATCACTAATGA+TGG | + | chr4.2:550306-550325 | MS.gene62615:intron | 40.0% | |
CATGGCTTCTTGCTAAGAAT+AGG | + | chr4.2:550947-550966 | MS.gene62615:CDS | 40.0% | |
CTCTCAGATGAACACTTCAA+TGG | + | chr4.2:549435-549454 | MS.gene62615:CDS | 40.0% | |
CTTACATTCACACGGTTACT+TGG | + | chr4.2:550974-550993 | MS.gene62615:CDS | 40.0% | |
GGTATTGTTCCTTGTGAAGA+TGG | - | chr4.2:549372-549391 | None:intergenic | 40.0% | |
TAGGACAGCTTACATTCACA+CGG | + | chr4.2:550966-550985 | MS.gene62615:CDS | 40.0% | |
TCAGAAGAATCAACAGCAAG+AGG | - | chr4.2:551072-551091 | None:intergenic | 40.0% | |
TCAGAATCATCTGGTAACAG+AGG | - | chr4.2:549624-549643 | None:intergenic | 40.0% | |
! | AACATCAGCTTGTTCAGGAA+AGG | - | chr4.2:549397-549416 | None:intergenic | 40.0% |
! | ACATCATGCTTGGTAATTGG+GGG | + | chr4.2:550021-550040 | MS.gene62615:intron | 40.0% |
! | GGATGAAAGTGTGAAGAGAT+TGG | + | chr4.2:549806-549825 | MS.gene62615:CDS | 40.0% |
! | GTTCCTTGTGAAGATGGATT+TGG | - | chr4.2:549366-549385 | None:intergenic | 40.0% |
! | TGGTAACAGAGGCATATCAT+AGG | - | chr4.2:549613-549632 | None:intergenic | 40.0% |
!! | GGAAAGGCTTTGAAAGTTAG+AGG | + | chr4.2:549663-549682 | MS.gene62615:CDS | 40.0% |
ACTGTTGCTGCATCAGGTAT+AGG | - | chr4.2:549330-549349 | None:intergenic | 45.0% | |
ATTGTGGGTCAGATCCATCA+GGG | - | chr4.2:551023-551042 | None:intergenic | 45.0% | |
CTGTTGCTGCATCAGGTATA+GGG | - | chr4.2:549329-549348 | None:intergenic | 45.0% | |
GTGCTTGCATAGCCTCTATT+CGG | + | chr4.2:549893-549912 | MS.gene62615:CDS | 45.0% | |
TTCAAATCCACCAAGAGCAG+TGG | - | chr4.2:549574-549593 | None:intergenic | 45.0% | |
! | AATGGATTTCCTGGTCTAGG+AGG | + | chr4.2:549861-549880 | MS.gene62615:CDS | 45.0% |
! | CTTGCAACATCAGCTTGTTC+AGG | - | chr4.2:549402-549421 | None:intergenic | 45.0% |
! | GTCAATGGATTTCCTGGTCT+AGG | + | chr4.2:549858-549877 | MS.gene62615:CDS | 45.0% |
! | TTGTGGCATGTTTGGAACCA+CGG | - | chr4.2:550296-550315 | None:intergenic | 45.0% |
!! | GAAGATGGATTTGGTGTGAG+TGG | - | chr4.2:549357-549376 | None:intergenic | 45.0% |
!! | GCTCTTGGTGGATTTGAACA+TGG | + | chr4.2:549576-549595 | MS.gene62615:CDS | 45.0% |
!! | AAAATTATTATTAAAAATGT+TGG | + | chr4.2:550532-550551 | MS.gene62615:intron | 5.0% |
GAGCAGGACAACATCTGCTA+CGG | - | chr4.2:549521-549540 | None:intergenic | 50.0% | |
GATTGTGGGTCAGATCCATC+AGG | - | chr4.2:551024-551043 | None:intergenic | 50.0% | |
GCTGCATCAGGTATAGGGAT+AGG | - | chr4.2:549324-549343 | None:intergenic | 50.0% | |
GCTTTGATGTTGAGCCCTGA+TGG | + | chr4.2:551006-551025 | MS.gene62615:CDS | 50.0% | |
GGTTGAACTGTTGCTGCATC+AGG | - | chr4.2:549336-549355 | None:intergenic | 50.0% | |
TTAGAGCAACCTCCTAGACC+AGG | - | chr4.2:549873-549892 | None:intergenic | 50.0% | |
! | TCAGCTTGTTCAGGAAAGGC+AGG | - | chr4.2:549393-549412 | None:intergenic | 50.0% |
CAGGACAACATCTGCTACGG+TGG | - | chr4.2:549518-549537 | None:intergenic | 55.0% | |
GCTTACTCTGCCACTGCTCT+TGG | + | chr4.2:549561-549580 | MS.gene62615:CDS | 55.0% | |
TACTCTGCCACTGCTCTTGG+TGG | + | chr4.2:549564-549583 | MS.gene62615:CDS | 55.0% | |
TATAGCCACGCAGCTAGAGC+AGG | - | chr4.2:549537-549556 | None:intergenic | 55.0% | |
GTTGTCCTGCTCTAGCTGCG+TGG | + | chr4.2:549529-549548 | MS.gene62615:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 549252 | 551188 | 549252 | ID=MS.gene62615 |
chr4.2 | mRNA | 549252 | 551188 | 549252 | ID=MS.gene62615.t1;Parent=MS.gene62615 |
chr4.2 | exon | 549252 | 549914 | 549252 | ID=MS.gene62615.t1.exon1;Parent=MS.gene62615.t1 |
chr4.2 | CDS | 549252 | 549914 | 549252 | ID=cds.MS.gene62615.t1;Parent=MS.gene62615.t1 |
chr4.2 | exon | 550862 | 551188 | 550862 | ID=MS.gene62615.t1.exon2;Parent=MS.gene62615.t1 |
chr4.2 | CDS | 550862 | 551188 | 550862 | ID=cds.MS.gene62615.t1;Parent=MS.gene62615.t1 |
Gene Sequence |
Protein sequence |