Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62841.t1 | XP_003608802.2 | 99.7 | 690 | 2 | 0 | 3 | 692 | 80 | 769 | 0.00E+00 | 1361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62841.t1 | Q9C5X3 | 78.7 | 667 | 138 | 2 | 29 | 692 | 1 | 666 | 1.9e-308 | 1059.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62841.t1 | A0A396IES2 | 99.7 | 690 | 2 | 0 | 3 | 692 | 80 | 769 | 0.0e+00 | 1361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051615 | MS.gene62841 | 0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene052161 | MS.gene62841 | 0.864469 | 1.19E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066610 | MS.gene62841 | PPI |
| MS.gene99067 | MS.gene62841 | PPI |
| MS.gene99119 | MS.gene62841 | PPI |
| MS.gene50283 | MS.gene62841 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62841.t1 | MTR_4g102120 | 99.700 | 666 | 2 | 0 | 27 | 692 | 1 | 666 | 0.0 | 1380 |
| MS.gene62841.t1 | MTR_5g011790 | 81.900 | 663 | 106 | 6 | 39 | 692 | 12 | 669 | 0.0 | 1135 |
| MS.gene62841.t1 | MTR_5g011790 | 81.920 | 625 | 100 | 5 | 76 | 692 | 1 | 620 | 0.0 | 1072 |
| MS.gene62841.t1 | MTR_5g011790 | 81.678 | 584 | 94 | 5 | 39 | 613 | 12 | 591 | 0.0 | 1001 |
| MS.gene62841.t1 | MTR_4g023610 | 64.438 | 658 | 220 | 7 | 29 | 674 | 1 | 656 | 0.0 | 881 |
| MS.gene62841.t1 | MTR_4g120070 | 54.505 | 222 | 59 | 4 | 292 | 485 | 7 | 214 | 1.54e-63 | 229 |
| MS.gene62841.t1 | MTR_3g090170 | 23.654 | 520 | 341 | 18 | 69 | 571 | 19 | 499 | 3.01e-24 | 108 |
| MS.gene62841.t1 | MTR_4g120060 | 48.352 | 91 | 47 | 0 | 186 | 276 | 38 | 128 | 1.52e-23 | 97.1 |
| MS.gene62841.t1 | MTR_3g090170 | 24.480 | 433 | 275 | 15 | 69 | 486 | 19 | 414 | 4.14e-22 | 100 |
| MS.gene62841.t1 | MTR_4g094405 | 22.997 | 387 | 262 | 11 | 67 | 436 | 34 | 401 | 9.03e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62841.t1 | AT1G12360 | 78.843 | 657 | 135 | 2 | 39 | 692 | 11 | 666 | 0.0 | 1087 |
| MS.gene62841.t1 | AT4G12120 | 66.616 | 653 | 212 | 3 | 42 | 692 | 14 | 662 | 0.0 | 919 |
| MS.gene62841.t1 | AT1G02010 | 67.281 | 651 | 190 | 9 | 42 | 680 | 17 | 656 | 0.0 | 894 |
| MS.gene62841.t1 | AT1G02010 | 65.438 | 651 | 189 | 10 | 42 | 680 | 17 | 643 | 0.0 | 882 |
| MS.gene62841.t1 | AT1G02010 | 64.317 | 681 | 190 | 10 | 42 | 680 | 17 | 686 | 0.0 | 877 |
| MS.gene62841.t1 | AT1G02010 | 67.244 | 635 | 185 | 9 | 58 | 680 | 1 | 624 | 0.0 | 871 |
| MS.gene62841.t1 | AT1G02010 | 66.384 | 589 | 175 | 9 | 42 | 618 | 17 | 594 | 0.0 | 810 |
| MS.gene62841.t1 | AT1G02010 | 65.764 | 517 | 155 | 8 | 176 | 680 | 1 | 507 | 0.0 | 684 |
| MS.gene62841.t1 | AT1G77140 | 21.965 | 519 | 352 | 15 | 69 | 571 | 19 | 500 | 1.79e-20 | 96.3 |
| MS.gene62841.t1 | AT2G17980 | 20.182 | 659 | 423 | 20 | 55 | 679 | 19 | 608 | 2.18e-17 | 86.7 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTACCTCAATTA+TGG | 0.115829 | 8.1:-21610234 | None:intergenic |
| GAAAAGTTAACAGCATTATT+AGG | 0.170268 | 8.1:+21609454 | MS.gene62841:CDS |
| GAACGCGTACTTTCTGTATA+AGG | 0.209404 | 8.1:-21604039 | None:intergenic |
| AACTTCCCTCTTGAGCTTTC+CGG | 0.210081 | 8.1:-21611598 | None:intergenic |
| AGAGCTTTGGAGGAGCTATT+TGG | 0.211478 | 8.1:+21605976 | MS.gene62841:CDS |
| TCTTCATAGCCTCTGAAATT+AGG | 0.216944 | 8.1:+21597261 | None:intergenic |
| GCTCAAGAGGGAAGTTATTC+TGG | 0.237770 | 8.1:+21611605 | MS.gene62841:CDS |
| GTTGCGATTGTTAATGATTC+TGG | 0.256096 | 8.1:+21609746 | MS.gene62841:CDS |
| CTCAAATTTCTCAGGATATA+TGG | 0.269433 | 8.1:-21609772 | None:intergenic |
| TTGCCTGCAGGTATTAATAA+TGG | 0.279220 | 8.1:+21599730 | MS.gene62841:intron |
| GTCTCAGTTTGAGGAAAATT+AGG | 0.288737 | 8.1:-21606320 | None:intergenic |
| GATGATTCCTCATCTTCTTA+TGG | 0.296156 | 8.1:+21597366 | MS.gene62841:CDS |
| GTGCCGTGATTTGTTGAATA+TGG | 0.297232 | 8.1:+21606513 | MS.gene62841:CDS |
| GAGCTTTGGAGGAGCTATTT+GGG | 0.304847 | 8.1:+21605977 | MS.gene62841:CDS |
| TTAATTTGTACCTCAATTAT+GGG | 0.314102 | 8.1:-21610233 | None:intergenic |
| AAAAGTTAACAGCATTATTA+GGG | 0.343370 | 8.1:+21609455 | MS.gene62841:CDS |
| AAAACTTCAACCAGTGGCTT+TGG | 0.344899 | 8.1:+21610038 | MS.gene62841:CDS |
| CAAGTCCGTAACATCATATC+TGG | 0.351974 | 8.1:-21611805 | None:intergenic |
| CCCCATCTTCTTGAAATCAC+TGG | 0.353343 | 8.1:-21611418 | None:intergenic |
| CTAAGCTTGCTGCCGGTGTA+TGG | 0.368486 | 8.1:+21606267 | MS.gene62841:CDS |
| ATGCTCAGGTCAGCGAAAAC+AGG | 0.371269 | 8.1:+21598583 | MS.gene62841:CDS |
| AGTTTCTCCATCTAGATTGC+AGG | 0.371829 | 8.1:+21609432 | MS.gene62841:intron |
| AACGCGTACTTTCTGTATAA+GGG | 0.375277 | 8.1:-21604038 | None:intergenic |
| AACAGCTCAAGAACTTTCAT+TGG | 0.376022 | 8.1:+21611775 | MS.gene62841:CDS |
| TGGAAGATCATGATCCTATA+TGG | 0.380708 | 8.1:+21606684 | MS.gene62841:CDS |
| TTGGGGACGAGGAGAATAAT+AGG | 0.381100 | 8.1:+21605995 | MS.gene62841:CDS |
| AGAATATTTATATTCATTGT+TGG | 0.383776 | 8.1:+21611444 | MS.gene62841:CDS |
| TTCACCTATCGCCAGAGAAT+TGG | 0.395061 | 8.1:+21604165 | MS.gene62841:CDS |
| ATCCAGTGATTTCAAGAAGA+TGG | 0.403228 | 8.1:+21611416 | MS.gene62841:CDS |
| AGGATTTGCCACAAGCTTAC+CGG | 0.403969 | 8.1:+21611579 | MS.gene62841:CDS |
| GAGACAGGACTTCGGGAACT+TGG | 0.416165 | 8.1:+21609477 | MS.gene62841:CDS |
| AACTCGCATGTCTCAGTTTG+AGG | 0.421183 | 8.1:-21606329 | None:intergenic |
| TATTAGGGAGACAGGACTTC+GGG | 0.426509 | 8.1:+21609470 | MS.gene62841:CDS |
| TGAGAAATTTGAGGGTGAAA+AGG | 0.429271 | 8.1:+21609782 | MS.gene62841:CDS |
| ATAAATAATTTGAGAGTGCT+AGG | 0.431782 | 8.1:+21609996 | MS.gene62841:CDS |
| TACAAACAATGAGAGAGCTT+TGG | 0.436186 | 8.1:+21605963 | MS.gene62841:CDS |
| TGATCCTGCACAATTTATTA+CGG | 0.437581 | 8.1:+21611644 | MS.gene62841:CDS |
| GAGAAATTTGAGGGTGAAAA+GGG | 0.439138 | 8.1:+21609783 | MS.gene62841:CDS |
| TGAGTTACGGATCCAGCATA+TGG | 0.439290 | 8.1:-21611014 | None:intergenic |
| TGACGAAGTTCAAGCCATAT+AGG | 0.450605 | 8.1:-21606698 | None:intergenic |
| TATGGTGTACCGTGGAAAGA+TGG | 0.452826 | 8.1:-21610996 | None:intergenic |
| TTTATTCTTTGAAATGAAGT+TGG | 0.454027 | 8.1:-21606874 | None:intergenic |
| TCCAGTGATTTCAAGAAGAT+GGG | 0.455512 | 8.1:+21611417 | MS.gene62841:CDS |
| ACACCGGCAGCAAGCTTAGT+AGG | 0.457876 | 8.1:-21606263 | None:intergenic |
| TTGTTCGCTTTCGTGCTGCC+AGG | 0.462577 | 8.1:+21606198 | MS.gene62841:CDS |
| CTCAAGAGGGAAGTTATTCT+GGG | 0.463615 | 8.1:+21611606 | MS.gene62841:CDS |
| TGTTCCATTTATAGGGGTAG+TGG | 0.463635 | 8.1:+21608203 | MS.gene62841:intron |
| AACAGCATTATTAGGGAGAC+AGG | 0.470635 | 8.1:+21609462 | MS.gene62841:CDS |
| AATCTCCATCACCAATTCTC+TGG | 0.471258 | 8.1:-21604176 | None:intergenic |
| GCAGCACGAAAGCGAACAAA+AGG | 0.474999 | 8.1:-21606194 | None:intergenic |
| GATGCTGGCATATAGCGATT+CGG | 0.476814 | 8.1:+21611380 | MS.gene62841:intron |
| CATTGATAGAACTATCGATC+AGG | 0.482344 | 8.1:+21606358 | MS.gene62841:CDS |
| AGAAGAAGATCGGCGATGAT+CGG | 0.487246 | 8.1:-21597287 | None:intergenic |
| CGAGAGAAAAGAGGTTCTGC+TGG | 0.487610 | 8.1:+21606664 | MS.gene62841:CDS |
| CGTACTTCTCTCTGGTAGGC+TGG | 0.489068 | 8.1:-21601830 | None:intergenic |
| CGACTCACCTCGAACCATGC+TGG | 0.492940 | 8.1:-21606908 | None:intergenic |
| AAAGTATACGTACTTCTCTC+TGG | 0.493635 | 8.1:-21601838 | None:intergenic |
| GATCAAGGCGAACACCAACT+TGG | 0.495387 | 8.1:+21611060 | MS.gene62841:CDS |
| AAAGGGTCTTAATTTGATGA+AGG | 0.495799 | 8.1:+21609800 | MS.gene62841:CDS |
| TCTTAAGTTTGATATGCATA+AGG | 0.497751 | 8.1:+21610061 | MS.gene62841:CDS |
| TGTTGCATGTTTGAATGTAA+TGG | 0.497827 | 8.1:+21606023 | MS.gene62841:CDS |
| TAAGCTTGCTGCCGGTGTAT+GGG | 0.506800 | 8.1:+21606268 | MS.gene62841:CDS |
| CAGGGGATTCAAAATCTACA+TGG | 0.507287 | 8.1:+21598602 | MS.gene62841:CDS |
| CACAAGAACTAACCTCTACA+TGG | 0.508539 | 8.1:-21608304 | None:intergenic |
| CTTACATGAAACACCTTCAT+CGG | 0.511291 | 8.1:-21599804 | None:intergenic |
| ATATTTATATTCATTGTTGG+TGG | 0.512795 | 8.1:+21611447 | MS.gene62841:CDS |
| CATATATCCTGAGAAATTTG+AGG | 0.513253 | 8.1:+21609773 | MS.gene62841:CDS |
| AAACAATGAGAGAGCTTTGG+AGG | 0.515998 | 8.1:+21605966 | MS.gene62841:CDS |
| CTATAGATTCCTGGCAGGAA+TGG | 0.522996 | 8.1:+21606632 | MS.gene62841:intron |
| AACAAGGGACTTACAGAAGA+TGG | 0.525806 | 8.1:+21608235 | MS.gene62841:CDS |
| GATTATTACATGAAATGCTC+AGG | 0.530646 | 8.1:+21598569 | MS.gene62841:CDS |
| ATGGCGGATATCACCGATGA+AGG | 0.531171 | 8.1:+21599791 | MS.gene62841:CDS |
| ATGGTGTACCGTGGAAAGAT+GGG | 0.531471 | 8.1:-21610995 | None:intergenic |
| TTGCTCCTGTGATACATGAA+TGG | 0.532328 | 8.1:+21606476 | MS.gene62841:CDS |
| AGACAGGACTTCGGGAACTT+GGG | 0.533028 | 8.1:+21609478 | MS.gene62841:CDS |
| GGAGGAGCTATTTGGGGACG+AGG | 0.533977 | 8.1:+21605984 | MS.gene62841:CDS |
| TGCTCAGGTCAGCGAAAACA+GGG | 0.540105 | 8.1:+21598584 | MS.gene62841:CDS |
| CCGCTCATTCAATTAGATCA+AGG | 0.541628 | 8.1:+21611045 | MS.gene62841:CDS |
| GCTTAGTAGGAATAAGATCA+TGG | 0.543305 | 8.1:-21606250 | None:intergenic |
| TGAGCTTTCCGGTAAGCTTG+TGG | 0.545816 | 8.1:-21611587 | None:intergenic |
| TTCCACGGTACACCATATGC+TGG | 0.547613 | 8.1:+21611002 | MS.gene62841:CDS |
| GTTTGAATGTAATGGCTACT+CGG | 0.550138 | 8.1:+21606031 | MS.gene62841:CDS |
| TAAGTCCATTCATGTATCAC+AGG | 0.551181 | 8.1:-21606481 | None:intergenic |
| TTATTAGGGAGACAGGACTT+CGG | 0.554400 | 8.1:+21609469 | MS.gene62841:CDS |
| TAAATAATTTGAGAGTGCTA+GGG | 0.554772 | 8.1:+21609997 | MS.gene62841:CDS |
| GACGAGAAGTAGAAGAAGAT+CGG | 0.556800 | 8.1:-21597297 | None:intergenic |
| CACAAATCCAGCATGGTTCG+AGG | 0.557287 | 8.1:+21606901 | MS.gene62841:CDS |
| TCGATTTGTTCACTGTATTG+TGG | 0.557662 | 8.1:-21608269 | None:intergenic |
| ATCAAGGCGAACACCAACTT+GGG | 0.559612 | 8.1:+21611061 | MS.gene62841:CDS |
| ATTCCTACTAAGCTTGCTGC+CGG | 0.561274 | 8.1:+21606260 | MS.gene62841:CDS |
| ATATATCCTGAGAAATTTGA+GGG | 0.563840 | 8.1:+21609774 | MS.gene62841:CDS |
| GGTGGACCACCATTCCTGCC+AGG | 0.564538 | 8.1:-21606641 | None:intergenic |
| AATACCGTAATAAATTGTGC+AGG | 0.567724 | 8.1:-21611648 | None:intergenic |
| GATGAAGTATATAGCATCCA+TGG | 0.568833 | 8.1:-21601808 | None:intergenic |
| GTACCGTGGAAAGATGGGCT+TGG | 0.571833 | 8.1:-21610990 | None:intergenic |
| TAGATTCCTGGCAGGAATGG+TGG | 0.572909 | 8.1:+21606635 | MS.gene62841:intron |
| AAGGCAGCCATTGCCCACCA+TGG | 0.574855 | 8.1:+21601791 | MS.gene62841:CDS |
| GTTCTGACGATGGATATTCA+AGG | 0.575558 | 8.1:+21611096 | MS.gene62841:CDS |
| CCTCCATATTCAACAAATCA+CGG | 0.577025 | 8.1:-21606516 | None:intergenic |
| GCGAAACCGTTGATCTCGAT+CGG | 0.580087 | 8.1:-21597321 | None:intergenic |
| CTTGATCTAATTGAATGAGC+GGG | 0.581029 | 8.1:-21611044 | None:intergenic |
| ATTCAACAAATCACGGCACA+TGG | 0.589594 | 8.1:-21606509 | None:intergenic |
| CCTCGAGGTCGAGCCCAAGT+TGG | 0.589762 | 8.1:-21611074 | None:intergenic |
| ATAGCATCCATGGTGGGCAA+TGG | 0.590445 | 8.1:-21601798 | None:intergenic |
| TCGTCTCCGATCGAGATCAA+CGG | 0.592577 | 8.1:+21597315 | MS.gene62841:CDS |
| ATAAGAAGATGAGGAATCAT+CGG | 0.593271 | 8.1:-21597364 | None:intergenic |
| AATGTCTCACTCTTGCAAGA+TGG | 0.595785 | 8.1:+21599772 | MS.gene62841:CDS |
| GTCTCACTCTTGCAAGATGG+CGG | 0.596309 | 8.1:+21599775 | MS.gene62841:CDS |
| AGCTTACCGGAAAGCTCAAG+AGG | 0.596417 | 8.1:+21611592 | MS.gene62841:CDS |
| ACCACATACCTGACTGTCGA+TGG | 0.601103 | 8.1:-21604374 | None:intergenic |
| CAAGCTCTCCCTCCATGTAG+AGG | 0.602244 | 8.1:+21608292 | MS.gene62841:CDS |
| AAACTTAAGACCAAAGCCAC+TGG | 0.605269 | 8.1:-21610048 | None:intergenic |
| CCGTGATTTGTTGAATATGG+AGG | 0.606207 | 8.1:+21606516 | MS.gene62841:CDS |
| GATCGGAAACCTAATTTCAG+AGG | 0.607087 | 8.1:-21597270 | None:intergenic |
| TGGTGGAGCGACTAGATCTG+AGG | 0.607261 | 8.1:+21611464 | MS.gene62841:CDS |
| AGCTTTGGAGGAGCTATTTG+GGG | 0.612309 | 8.1:+21605978 | MS.gene62841:CDS |
| CCTTGATCTAATTGAATGAG+CGG | 0.618052 | 8.1:-21611045 | None:intergenic |
| GATTCCTCATCTTCTTATGG+CGG | 0.619097 | 8.1:+21597369 | MS.gene62841:CDS |
| CGTGATTTGTTGAATATGGA+GGG | 0.619536 | 8.1:+21606517 | MS.gene62841:CDS |
| ATCACCAATTCTCTGGCGAT+AGG | 0.625497 | 8.1:-21604169 | None:intergenic |
| GGGCTTGGATCATTTAGACA+TGG | 0.627100 | 8.1:-21610975 | None:intergenic |
| TGTGTTCGCATCTAGTGACC+TGG | 0.627361 | 8.1:-21606216 | None:intergenic |
| AAATAATTTGAGAGTGCTAG+GGG | 0.627793 | 8.1:+21609998 | MS.gene62841:CDS |
| TTCACCGCCATAAGAAGATG+AGG | 0.630538 | 8.1:-21597373 | None:intergenic |
| TGGTCCACCCGAGAGAAAAG+AGG | 0.631616 | 8.1:+21606655 | MS.gene62841:CDS |
| CGACCTCGAGGTTCTGACGA+TGG | 0.634447 | 8.1:+21611086 | MS.gene62841:CDS |
| TATCGCCAGAGAATTGGTGA+TGG | 0.639643 | 8.1:+21604171 | MS.gene62841:CDS |
| CCAGTGATTTCAAGAAGATG+GGG | 0.642821 | 8.1:+21611418 | MS.gene62841:CDS |
| GATCCAAGCCCATCTTTCCA+CGG | 0.642835 | 8.1:+21610987 | MS.gene62841:CDS |
| GGAAAAGGAACTTACTCTCG+CGG | 0.644023 | 8.1:-21597419 | None:intergenic |
| GGATTCAAAATCTACATGGA+AGG | 0.645506 | 8.1:+21598606 | MS.gene62841:CDS |
| GATCTAATTGAATGAGCGGG+AGG | 0.647433 | 8.1:-21611041 | None:intergenic |
| TATACGTACTTCTCTCTGGT+AGG | 0.649699 | 8.1:-21601834 | None:intergenic |
| AGAACTAACCTCTACATGGA+GGG | 0.650440 | 8.1:-21608300 | None:intergenic |
| TTGAAGACATATACAAGCGA+AGG | 0.650592 | 8.1:+21601772 | MS.gene62841:CDS |
| TCGCATAGGTGCTTTAAGAG+AGG | 0.658334 | 8.1:+21604222 | MS.gene62841:CDS |
| TCTCTTAAAGCACCTATGCG+AGG | 0.659665 | 8.1:-21604220 | None:intergenic |
| GGCCTTGCCAGGCTAGTGAA+CGG | 0.660939 | 8.1:+21606835 | MS.gene62841:intron |
| AAGTATATAGCATCCATGGT+GGG | 0.661815 | 8.1:-21601804 | None:intergenic |
| ATCCAGCATATGGTGTACCG+TGG | 0.670280 | 8.1:-21611004 | None:intergenic |
| ATCGTGCAGAAGAAGAGACA+TGG | 0.671651 | 8.1:+21610192 | MS.gene62841:CDS |
| GCTTACCGGAAAGCTCAAGA+GGG | 0.676998 | 8.1:+21611593 | MS.gene62841:CDS |
| CATAAGACAGTCCCATACAC+CGG | 0.678597 | 8.1:-21606279 | None:intergenic |
| AAAGCTGCACAAATCCAGCA+TGG | 0.680051 | 8.1:+21606894 | MS.gene62841:CDS |
| CCAACTTGGGCTCGACCTCG+AGG | 0.690570 | 8.1:+21611074 | MS.gene62841:CDS |
| GGGAAATAAATATGTTCACG+AGG | 0.698190 | 8.1:+21606537 | MS.gene62841:CDS |
| GAAGTATATAGCATCCATGG+TGG | 0.701092 | 8.1:-21601805 | None:intergenic |
| AAGAACTAACCTCTACATGG+AGG | 0.706270 | 8.1:-21608301 | None:intergenic |
| GTAGTGGTGAAATGTCAACA+AGG | 0.721505 | 8.1:+21608219 | MS.gene62841:CDS |
| GCTCAGGTCAGCGAAAACAG+GGG | 0.728755 | 8.1:+21598585 | MS.gene62841:CDS |
| TAGTGGTGAAATGTCAACAA+GGG | 0.732016 | 8.1:+21608220 | MS.gene62841:CDS |
| ATCGGACAAAGACATAGACA+TGG | 0.736382 | 8.1:-21597346 | None:intergenic |
| AATAATTTGAGAGTGCTAGG+GGG | 0.737660 | 8.1:+21609999 | MS.gene62841:CDS |
| GGACAAAGACATAGACATGG+TGG | 0.738252 | 8.1:-21597343 | None:intergenic |
| TATCCATCGTCAGAACCTCG+AGG | 0.756819 | 8.1:-21611089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21597270 | 21611814 | 21597270 | ID=MS.gene62841 |
| chr8.1 | mRNA | 21597270 | 21611814 | 21597270 | ID=MS.gene62841.t1;Parent=MS.gene62841 |
| chr8.1 | exon | 21597270 | 21597426 | 21597270 | ID=MS.gene62841.t1.exon1;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21597270 | 21597426 | 21597270 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21598569 | 21598627 | 21598569 | ID=MS.gene62841.t1.exon2;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21598569 | 21598627 | 21598569 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21599740 | 21599821 | 21599740 | ID=MS.gene62841.t1.exon3;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21599740 | 21599821 | 21599740 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21601769 | 21601847 | 21601769 | ID=MS.gene62841.t1.exon4;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21601769 | 21601847 | 21601769 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21604001 | 21604051 | 21604001 | ID=MS.gene62841.t1.exon5;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21604001 | 21604051 | 21604001 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21604147 | 21604243 | 21604147 | ID=MS.gene62841.t1.exon6;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21604147 | 21604243 | 21604147 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21604355 | 21604387 | 21604355 | ID=MS.gene62841.t1.exon7;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21604355 | 21604387 | 21604355 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21605955 | 21606080 | 21605955 | ID=MS.gene62841.t1.exon8;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21605955 | 21606080 | 21605955 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21606188 | 21606379 | 21606188 | ID=MS.gene62841.t1.exon9;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21606188 | 21606379 | 21606188 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21606475 | 21606558 | 21606475 | ID=MS.gene62841.t1.exon10;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21606475 | 21606558 | 21606475 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21606638 | 21606736 | 21606638 | ID=MS.gene62841.t1.exon11;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21606638 | 21606736 | 21606638 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21606846 | 21606922 | 21606846 | ID=MS.gene62841.t1.exon12;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21606846 | 21606922 | 21606846 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21608217 | 21608313 | 21608217 | ID=MS.gene62841.t1.exon13;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21608217 | 21608313 | 21608217 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21609447 | 21609572 | 21609447 | ID=MS.gene62841.t1.exon14;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21609447 | 21609572 | 21609447 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21609726 | 21609821 | 21609726 | ID=MS.gene62841.t1.exon15;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21609726 | 21609821 | 21609726 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21609963 | 21610082 | 21609963 | ID=MS.gene62841.t1.exon16;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21609963 | 21610082 | 21609963 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21610170 | 21610244 | 21610170 | ID=MS.gene62841.t1.exon17;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21610170 | 21610244 | 21610170 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21610927 | 21611117 | 21610927 | ID=MS.gene62841.t1.exon18;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21610927 | 21611117 | 21610927 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21611395 | 21611485 | 21611395 | ID=MS.gene62841.t1.exon19;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21611395 | 21611485 | 21611395 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21611576 | 21611665 | 21611576 | ID=MS.gene62841.t1.exon20;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21611576 | 21611665 | 21611576 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| chr8.1 | exon | 21611758 | 21611814 | 21611758 | ID=MS.gene62841.t1.exon21;Parent=MS.gene62841.t1 |
| chr8.1 | CDS | 21611758 | 21611814 | 21611758 | ID=cds.MS.gene62841.t1;Parent=MS.gene62841.t1 |
| Gene Sequence |
| Protein sequence |
