Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62856.t1 | XP_003608787.1 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 3.60E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62856.t1 | Q9LNA5 | 68.6 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 8.5e-166 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62856.t1 | G7JK72 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 2.6e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene62856 | 0.801389 | 9.21E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene62856 | 0.808605 | 2.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62856.t1 | MTR_4g101950 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| MS.gene62856.t1 | MTR_5g011580 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| MS.gene62856.t1 | MTR_5g047260 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 4.35e-151 | 437 |
| MS.gene62856.t1 | MTR_7g022470 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.41e-150 | 435 |
| MS.gene62856.t1 | MTR_7g028050 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 3.15e-146 | 424 |
| MS.gene62856.t1 | MTR_3g088885 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 2.50e-132 | 389 |
| MS.gene62856.t1 | MTR_1g029520 | 46.829 | 410 | 178 | 7 | 22 | 399 | 254 | 655 | 8.86e-122 | 370 |
| MS.gene62856.t1 | MTR_5g047260 | 53.614 | 332 | 146 | 3 | 8 | 331 | 19 | 350 | 1.54e-118 | 350 |
| MS.gene62856.t1 | MTR_5g015170 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 8.00e-105 | 320 |
| MS.gene62856.t1 | MTR_5g047260 | 53.265 | 291 | 128 | 3 | 8 | 290 | 19 | 309 | 4.53e-100 | 301 |
| MS.gene62856.t1 | MTR_7g028050 | 48.204 | 334 | 159 | 4 | 114 | 441 | 14 | 339 | 1.18e-99 | 301 |
| MS.gene62856.t1 | MTR_4g097380 | 39.618 | 419 | 226 | 5 | 9 | 400 | 31 | 449 | 5.49e-98 | 302 |
| MS.gene62856.t1 | MTR_1g012740 | 31.538 | 130 | 82 | 2 | 234 | 362 | 30 | 153 | 3.71e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62856.t1 | AT1G12420 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| MS.gene62856.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene62856.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene62856.t1 | AT1G12420 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.25e-177 | 499 |
| MS.gene62856.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.17e-154 | 444 |
| MS.gene62856.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.37e-154 | 444 |
| MS.gene62856.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene62856.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.72e-137 | 401 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.87e-137 | 402 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene62856.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene62856.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62856.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62856.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62856.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62856.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62856.t1 | AT5G25320 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.22e-113 | 342 |
| MS.gene62856.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 1.99e-108 | 324 |
| MS.gene62856.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.05e-108 | 324 |
| MS.gene62856.t1 | AT5G25320 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 2.91e-108 | 328 |
| MS.gene62856.t1 | AT3G01990 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.44e-108 | 323 |
| MS.gene62856.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene62856.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene62856.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.00e-87 | 269 |
| MS.gene62856.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene62856.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene62856.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 3.97e-87 | 268 |
| MS.gene62856.t1 | AT5G25320 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.82e-87 | 270 |
| MS.gene62856.t1 | AT5G65890 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.02e-62 | 207 |
| MS.gene62856.t1 | AT2G39570 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.57e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8.1:+21771922 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8.1:+21771870 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8.1:+21771206 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8.1:-21770390 | MS.gene62856:CDS |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8.1:+21771260 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8.1:-21771492 | MS.gene62856:CDS |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8.1:-21771921 | MS.gene62856:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8.1:+21772047 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8.1:-21771734 | MS.gene62856:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8.1:+21770886 | None:intergenic |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8.1:+21770887 | None:intergenic |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8.1:-21770389 | MS.gene62856:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8.1:-21771178 | MS.gene62856:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8.1:-21771319 | MS.gene62856:CDS |
| TTTCTCGAATGTAGGGTGTT+AGG | 0.364741 | 8.1:-21770721 | MS.gene62856:intron |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8.1:-21771401 | MS.gene62856:CDS |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8.1:+21771409 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8.1:-21771367 | MS.gene62856:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8.1:+21771243 | None:intergenic |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8.1:-21771843 | MS.gene62856:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8.1:-21770422 | MS.gene62856:CDS |
| CATAACTACGACCGGAGACT+TGG | 0.440479 | 8.1:-21770609 | MS.gene62856:CDS |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8.1:-21770504 | MS.gene62856:CDS |
| TAGAAGCCCTTGTCTGTCTT+CGG | 0.448964 | 8.1:+21770685 | None:intergenic |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8.1:-21771168 | MS.gene62856:CDS |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8.1:-21771537 | MS.gene62856:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8.1:-21771857 | MS.gene62856:CDS |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8.1:-21771177 | MS.gene62856:CDS |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8.1:+21771420 | None:intergenic |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8.1:+21770642 | None:intergenic |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8.1:+21772056 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8.1:-21771546 | MS.gene62856:CDS |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8.1:-21770890 | MS.gene62856:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8.1:-21770443 | MS.gene62856:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8.1:-21770575 | MS.gene62856:CDS |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8.1:-21771454 | MS.gene62856:CDS |
| TGAGAACATTCCGAGAGAAC+GGG | 0.497653 | 8.1:-21770652 | MS.gene62856:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8.1:+21770598 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8.1:-21771169 | MS.gene62856:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8.1:+21770559 | None:intergenic |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8.1:-21771850 | MS.gene62856:CDS |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8.1:-21772049 | MS.gene62856:intron |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | 8.1:+21770871 | None:intergenic |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8.1:-21770446 | MS.gene62856:CDS |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8.1:+21770396 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8.1:-21771932 | MS.gene62856:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8.1:-21771507 | MS.gene62856:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8.1:+21770888 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8.1:-21771138 | MS.gene62856:CDS |
| ATGAGAACATTCCGAGAGAA+CGG | 0.537132 | 8.1:-21770653 | MS.gene62856:CDS |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8.1:-21770452 | MS.gene62856:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8.1:-21771271 | MS.gene62856:CDS |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8.1:-21772590 | MS.gene62856:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8.1:-21770442 | MS.gene62856:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8.1:+21771529 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | 8.1:-21771036 | MS.gene62856:intron |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8.1:-21771387 | MS.gene62856:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8.1:-21771198 | MS.gene62856:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8.1:-21771400 | MS.gene62856:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8.1:+21771469 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8.1:-21772603 | None:intergenic |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | 8.1:+21771027 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8.1:+21771179 | None:intergenic |
| GTCTCCGGTCGTAGTTATGT+CGG | 0.579009 | 8.1:+21770613 | None:intergenic |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8.1:+21771283 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8.1:-21770468 | MS.gene62856:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8.1:-21770469 | MS.gene62856:CDS |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8.1:-21770441 | MS.gene62856:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8.1:-21770406 | MS.gene62856:CDS |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8.1:-21771465 | MS.gene62856:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8.1:-21771536 | MS.gene62856:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8.1:+21771412 | None:intergenic |
| CGTGCCGACATAACTACGAC+CGG | 0.604421 | 8.1:-21770617 | MS.gene62856:CDS |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8.1:+21771054 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8.1:-21771581 | MS.gene62856:CDS |
| TCGGAATGTTCTCATTACCT+CGG | 0.619947 | 8.1:+21770661 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8.1:+21771246 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8.1:+21771225 | None:intergenic |
| CTATGCACCGAAGACAGACA+AGG | 0.623692 | 8.1:-21770692 | MS.gene62856:CDS |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8.1:-21771521 | MS.gene62856:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8.1:-21771090 | MS.gene62856:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8.1:-21771468 | MS.gene62856:CDS |
| CAGACAAGGGCTTCTAGCCG+AGG | 0.637281 | 8.1:-21770678 | MS.gene62856:CDS |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8.1:-21771471 | MS.gene62856:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8.1:-21771055 | MS.gene62856:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8.1:-21771167 | MS.gene62856:CDS |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | 8.1:+21770863 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8.1:-21771839 | MS.gene62856:intron |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8.1:-21771443 | MS.gene62856:CDS |
| TATGCACCGAAGACAGACAA+GGG | 0.703882 | 8.1:-21770691 | MS.gene62856:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8.1:-21770833 | MS.gene62856:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8.1:-21771054 | MS.gene62856:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | chr8.1:21770822-21770841 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | - | chr8.1:21772018-21772037 | MS.gene62856:intron | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | + | chr8.1:21772008-21772027 | None:intergenic | 10.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | chr8.1:21771343-21771362 | None:intergenic | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | chr8.1:21770796-21770815 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | chr8.1:21771196-21771215 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | chr8.1:21770941-21770960 | MS.gene62856:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | chr8.1:21772201-21772220 | None:intergenic | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | chr8.1:21771195-21771214 | None:intergenic | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | chr8.1:21770942-21770961 | MS.gene62856:intron | 15.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | chr8.1:21770505-21770524 | MS.gene62856:CDS | 15.0% |
| !!! | TAATGCAATGTTTTTTTTTT+TGG | - | chr8.1:21771964-21771983 | MS.gene62856:intron | 15.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | chr8.1:21770600-21770619 | MS.gene62856:CDS | 20.0% |
| !! | ATTATTAATTTCTCGAATGT+AGG | - | chr8.1:21772227-21772246 | MS.gene62856:intron | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | chr8.1:21770552-21770571 | None:intergenic | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | chr8.1:21771089-21771108 | None:intergenic | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | chr8.1:21772452-21772471 | MS.gene62856:intron | 20.0% |
| !! | TTATTAATTTCTCGAATGTA+GGG | - | chr8.1:21772228-21772247 | MS.gene62856:intron | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | chr8.1:21771146-21771165 | MS.gene62856:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | chr8.1:21771266-21771285 | MS.gene62856:CDS | 20.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | chr8.1:21770443-21770462 | None:intergenic | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | chr8.1:21770606-21770625 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | chr8.1:21770500-21770519 | None:intergenic | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | chr8.1:21772430-21772449 | MS.gene62856:intron | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | chr8.1:21771589-21771608 | MS.gene62856:intron | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | chr8.1:21771275-21771294 | MS.gene62856:CDS | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | chr8.1:21770599-21770618 | MS.gene62856:CDS | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | chr8.1:21771550-21771569 | None:intergenic | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | chr8.1:21771396-21771415 | MS.gene62856:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | chr8.1:21771547-21771566 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | chr8.1:21770952-21770971 | None:intergenic | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | chr8.1:21770903-21770922 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | chr8.1:21770793-21770812 | None:intergenic | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | chr8.1:21771753-21771772 | None:intergenic | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | chr8.1:21770862-21770881 | MS.gene62856:CDS | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | chr8.1:21770592-21770611 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | chr8.1:21770591-21770610 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | chr8.1:21772043-21772062 | MS.gene62856:intron | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | chr8.1:21770861-21770880 | MS.gene62856:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | chr8.1:21771621-21771640 | MS.gene62856:intron | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | chr8.1:21771235-21771254 | None:intergenic | 25.0% |
| AAAGCATATGTTTCATCTGA+TGG | - | chr8.1:21771099-21771118 | MS.gene62856:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | chr8.1:21770673-21770692 | None:intergenic | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | chr8.1:21772567-21772586 | MS.gene62856:CDS | 30.0% | |
| GAATCAGTTCGTCAAAAAAT+TGG | - | chr8.1:21772429-21772448 | MS.gene62856:intron | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | chr8.1:21771637-21771656 | MS.gene62856:intron | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | chr8.1:21770912-21770931 | None:intergenic | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | chr8.1:21771375-21771394 | MS.gene62856:CDS | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | chr8.1:21770539-21770558 | None:intergenic | 30.0% | |
| TTCCAATTCAACTATAGTCA+AGG | - | chr8.1:21770907-21770926 | MS.gene62856:CDS | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | chr8.1:21770645-21770664 | MS.gene62856:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | chr8.1:21771734-21771753 | None:intergenic | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | chr8.1:21771222-21771241 | MS.gene62856:CDS | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | chr8.1:21772039-21772058 | MS.gene62856:intron | 30.0% |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | chr8.1:21770785-21770804 | None:intergenic | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | chr8.1:21772419-21772438 | None:intergenic | 30.0% |
| AAGTAACTACCATGTATGCT+TGG | + | chr8.1:21771932-21771951 | None:intergenic | 35.0% | |
| AAGTCATCAAAAGGTAGAGA+GGG | - | chr8.1:21772488-21772507 | MS.gene62856:intron | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | chr8.1:21771676-21771695 | None:intergenic | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | chr8.1:21771556-21771575 | MS.gene62856:CDS | 35.0% | |
| ATGTTTCATCTGATGGAAGA+TGG | - | chr8.1:21771106-21771125 | MS.gene62856:CDS | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | chr8.1:21771037-21771056 | None:intergenic | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | chr8.1:21771539-21771558 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | chr8.1:21771685-21771704 | MS.gene62856:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | chr8.1:21772566-21772585 | MS.gene62856:CDS | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | chr8.1:21771555-21771574 | MS.gene62856:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | chr8.1:21771866-21771885 | MS.gene62856:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | chr8.1:21771818-21771837 | MS.gene62856:intron | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | chr8.1:21772483-21772502 | None:intergenic | 35.0% |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | chr8.1:21771035-21771054 | MS.gene62856:intron | 35.0% |
| AACCCCAATTAGTTCAGAAC+CGG | - | chr8.1:21772066-21772085 | MS.gene62856:CDS | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | chr8.1:21772514-21772533 | MS.gene62856:intron | 40.0% | |
| ATCTGATGGAAGATGGTTCA+TGG | - | chr8.1:21771113-21771132 | MS.gene62856:CDS | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | chr8.1:21772303-21772322 | MS.gene62856:intron | 40.0% | |
| CAAGTCATCAAAAGGTAGAG+AGG | - | chr8.1:21772487-21772506 | MS.gene62856:intron | 40.0% | |
| CAATTCTGTACAGTCACTAC+CGG | + | chr8.1:21771780-21771799 | None:intergenic | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | chr8.1:21771902-21771921 | MS.gene62856:CDS | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | chr8.1:21772510-21772529 | MS.gene62856:intron | 40.0% | |
| GCTAAAGTATGGACTCACAA+TGG | - | chr8.1:21771513-21771532 | MS.gene62856:CDS | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | chr8.1:21771779-21771798 | MS.gene62856:intron | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | chr8.1:21770585-21770604 | None:intergenic | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | chr8.1:21771901-21771920 | MS.gene62856:CDS | 40.0% | |
| TCGGAATGTTCTCATTACCT+CGG | + | chr8.1:21772298-21772317 | None:intergenic | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | chr8.1:21771788-21771807 | MS.gene62856:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | chr8.1:21772563-21772582 | None:intergenic | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | chr8.1:21772317-21772336 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | chr8.1:21772381-21772400 | MS.gene62856:intron | 40.0% | |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | chr8.1:21772479-21772498 | MS.gene62856:intron | 40.0% |
| ! | TTTCTCGAATGTAGGGTGTT+AGG | - | chr8.1:21772235-21772254 | MS.gene62856:intron | 40.0% |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | chr8.1:21771758-21771777 | MS.gene62856:intron | 40.0% |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | chr8.1:21771464-21771483 | MS.gene62856:CDS | 40.0% |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | chr8.1:21771024-21771043 | MS.gene62856:intron | 40.0% |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | chr8.1:21772410-21772429 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | chr8.1:21772411-21772430 | None:intergenic | 40.0% |
| AACATTTGCAGCCAAGTCTC+CGG | + | chr8.1:21772361-21772380 | None:intergenic | 45.0% | |
| AAGAAGGAAGACACGAACCT+AGG | + | chr8.1:21770427-21770446 | None:intergenic | 45.0% | |
| AAGGGTTGACCAAGCATACA+TGG | - | chr8.1:21771920-21771939 | MS.gene62856:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | chr8.1:21772128-21772147 | MS.gene62856:intron | 45.0% | |
| AGTAGAGAGAAGATCATGCG+AGG | - | chr8.1:21772123-21772142 | MS.gene62856:intron | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | chr8.1:21771430-21771449 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | chr8.1:21771716-21771735 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | chr8.1:21771778-21771797 | MS.gene62856:intron | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | chr8.1:21771420-21771439 | MS.gene62856:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | chr8.1:21771787-21771806 | MS.gene62856:intron | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | chr8.1:21772504-21772523 | MS.gene62856:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | chr8.1:21772513-21772532 | MS.gene62856:intron | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | chr8.1:21771117-21771136 | MS.gene62856:CDS | 45.0% | |
| GGTCTGCAAACATCATTTGG+TGG | + | chr8.1:21771713-21771732 | None:intergenic | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | chr8.1:21771789-21771808 | MS.gene62856:intron | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | chr8.1:21771410-21771429 | MS.gene62856:CDS | 45.0% | |
| TAGAAGCCCTTGTCTGTCTT+CGG | + | chr8.1:21772274-21772293 | None:intergenic | 45.0% | |
| TATGCACCGAAGACAGACAA+GGG | - | chr8.1:21772265-21772284 | MS.gene62856:intron | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | chr8.1:21772515-21772534 | MS.gene62856:intron | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | chr8.1:21771419-21771438 | MS.gene62856:CDS | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | chr8.1:21772304-21772323 | MS.gene62856:intron | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | chr8.1:21770683-21770702 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | chr8.1:21771502-21771521 | MS.gene62856:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | chr8.1:21771699-21771718 | None:intergenic | 45.0% |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | chr8.1:21770407-21770426 | MS.gene62856:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | chr8.1:21771569-21771588 | MS.gene62856:CDS | 45.0% |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | chr8.1:21771905-21771924 | None:intergenic | 45.0% |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | chr8.1:21772071-21772090 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | + | chr8.1:21772096-21772115 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | chr8.1:21772072-21772091 | None:intergenic | 45.0% |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | chr8.1:21770701-21770720 | None:intergenic | 5.0% |
| CACCACATCACATTGCAGCT+CGG | + | chr8.1:21771490-21771509 | None:intergenic | 50.0% | |
| CATAACTACGACCGGAGACT+TGG | - | chr8.1:21772347-21772366 | MS.gene62856:intron | 50.0% | |
| CTATGCACCGAAGACAGACA+AGG | - | chr8.1:21772264-21772283 | MS.gene62856:intron | 50.0% | |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | chr8.1:21772550-21772569 | MS.gene62856:CDS | 50.0% | |
| GTCTCCGGTCGTAGTTATGT+CGG | + | chr8.1:21772346-21772365 | None:intergenic | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | chr8.1:21772400-21772419 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | chr8.1:21772534-21772553 | MS.gene62856:intron | 50.0% |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | chr8.1:21772073-21772092 | None:intergenic | 50.0% |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | chr8.1:21771449-21771468 | MS.gene62856:CDS | 50.0% |
| CGAGCTGCAATGTGATGTGG+TGG | - | chr8.1:21771488-21771507 | MS.gene62856:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | chr8.1:21771491-21771510 | MS.gene62856:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | + | chr8.1:21772088-21772107 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACGAC+CGG | - | chr8.1:21772339-21772358 | MS.gene62856:intron | 55.0% |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | chr8.1:21771435-21771454 | MS.gene62856:CDS | 55.0% |
| CAGACAAGGGCTTCTAGCCG+AGG | - | chr8.1:21772278-21772297 | MS.gene62856:intron | 60.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | - | chr8.1:21771485-21771504 | MS.gene62856:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21770367 | 21772611 | 21770367 | ID=MS.gene62856 |
| chr8.1 | mRNA | 21770367 | 21772611 | 21770367 | ID=MS.gene62856.t1;Parent=MS.gene62856 |
| chr8.1 | exon | 21772550 | 21772611 | 21772550 | ID=MS.gene62856.t1.exon1;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21772550 | 21772611 | 21772550 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21772050 | 21772095 | 21772050 | ID=MS.gene62856.t1.exon2;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21772050 | 21772095 | 21772050 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21771840 | 21771954 | 21771840 | ID=MS.gene62856.t1.exon3;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21771840 | 21771954 | 21771840 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21771691 | 21771758 | 21771691 | ID=MS.gene62856.t1.exon4;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21771691 | 21771758 | 21771691 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21771037 | 21771603 | 21771037 | ID=MS.gene62856.t1.exon5;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21771037 | 21771603 | 21771037 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21770834 | 21770938 | 21770834 | ID=MS.gene62856.t1.exon6;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21770834 | 21770938 | 21770834 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| chr8.1 | exon | 21770367 | 21770729 | 21770367 | ID=MS.gene62856.t1.exon7;Parent=MS.gene62856.t1 |
| chr8.1 | CDS | 21770367 | 21770729 | 21770367 | ID=cds.MS.gene62856.t1;Parent=MS.gene62856.t1 |
| Gene Sequence |
| Protein sequence |
