Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62857.t1 | XP_003608787.1 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 3.60E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62857.t1 | Q9LNA5 | 68.6 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 8.5e-166 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62857.t1 | G7JK72 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 2.6e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene62857 | 0.818489 | 1.91E-52 | -1.69E-46 |
| MS.gene053538 | MS.gene62857 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene62857 | 0.800031 | 1.74E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene62857 | 0.825067 | 5.74E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62857.t1 | MTR_4g101950 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| MS.gene62857.t1 | MTR_5g011580 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| MS.gene62857.t1 | MTR_5g047260 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 4.35e-151 | 437 |
| MS.gene62857.t1 | MTR_7g022470 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.41e-150 | 435 |
| MS.gene62857.t1 | MTR_7g028050 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 3.15e-146 | 424 |
| MS.gene62857.t1 | MTR_3g088885 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 2.50e-132 | 389 |
| MS.gene62857.t1 | MTR_1g029520 | 46.829 | 410 | 178 | 7 | 22 | 399 | 254 | 655 | 8.86e-122 | 370 |
| MS.gene62857.t1 | MTR_5g047260 | 53.614 | 332 | 146 | 3 | 8 | 331 | 19 | 350 | 1.54e-118 | 350 |
| MS.gene62857.t1 | MTR_5g015170 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 8.00e-105 | 320 |
| MS.gene62857.t1 | MTR_5g047260 | 53.265 | 291 | 128 | 3 | 8 | 290 | 19 | 309 | 4.53e-100 | 301 |
| MS.gene62857.t1 | MTR_7g028050 | 48.204 | 334 | 159 | 4 | 114 | 441 | 14 | 339 | 1.18e-99 | 301 |
| MS.gene62857.t1 | MTR_4g097380 | 39.618 | 419 | 226 | 5 | 9 | 400 | 31 | 449 | 5.49e-98 | 302 |
| MS.gene62857.t1 | MTR_1g012740 | 31.538 | 130 | 82 | 2 | 234 | 362 | 30 | 153 | 3.71e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62857.t1 | AT1G12420 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| MS.gene62857.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene62857.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene62857.t1 | AT1G12420 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.25e-177 | 499 |
| MS.gene62857.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.17e-154 | 444 |
| MS.gene62857.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.37e-154 | 444 |
| MS.gene62857.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene62857.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.72e-137 | 401 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.87e-137 | 402 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene62857.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene62857.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62857.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62857.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62857.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62857.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene62857.t1 | AT5G25320 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.22e-113 | 342 |
| MS.gene62857.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 1.99e-108 | 324 |
| MS.gene62857.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.05e-108 | 324 |
| MS.gene62857.t1 | AT5G25320 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 2.91e-108 | 328 |
| MS.gene62857.t1 | AT3G01990 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.44e-108 | 323 |
| MS.gene62857.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene62857.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene62857.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.00e-87 | 269 |
| MS.gene62857.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene62857.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene62857.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 3.97e-87 | 268 |
| MS.gene62857.t1 | AT5G25320 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.82e-87 | 270 |
| MS.gene62857.t1 | AT5G65890 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.02e-62 | 207 |
| MS.gene62857.t1 | AT2G39570 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.57e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8.1:+21800509 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8.1:+21800457 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8.1:+21799793 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8.1:-21798977 | MS.gene62857:CDS |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8.1:+21799847 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8.1:-21800079 | MS.gene62857:CDS |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8.1:-21800508 | MS.gene62857:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8.1:+21800634 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8.1:-21800321 | MS.gene62857:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8.1:+21799473 | None:intergenic |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8.1:+21799474 | None:intergenic |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8.1:-21798976 | MS.gene62857:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8.1:-21799765 | MS.gene62857:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8.1:-21799906 | MS.gene62857:CDS |
| TTTCTCGAATGTAGGGTGTT+AGG | 0.364741 | 8.1:-21799308 | MS.gene62857:intron |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8.1:-21799988 | MS.gene62857:CDS |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8.1:+21799996 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8.1:-21799954 | MS.gene62857:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8.1:+21799830 | None:intergenic |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8.1:-21800430 | MS.gene62857:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8.1:-21799009 | MS.gene62857:CDS |
| CATAACTACGACCGGAGACT+TGG | 0.440479 | 8.1:-21799196 | MS.gene62857:CDS |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8.1:-21799091 | MS.gene62857:CDS |
| TAGAAGCCCTTGTCTGTCTT+CGG | 0.448964 | 8.1:+21799272 | None:intergenic |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8.1:-21799755 | MS.gene62857:CDS |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8.1:-21800124 | MS.gene62857:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8.1:-21800444 | MS.gene62857:CDS |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8.1:-21799764 | MS.gene62857:CDS |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8.1:+21800007 | None:intergenic |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8.1:+21799229 | None:intergenic |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8.1:+21800643 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8.1:-21800133 | MS.gene62857:CDS |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8.1:-21799477 | MS.gene62857:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8.1:-21799030 | MS.gene62857:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8.1:-21799162 | MS.gene62857:CDS |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8.1:-21800041 | MS.gene62857:CDS |
| TGAGAACATTCCGAGAGAAC+GGG | 0.497653 | 8.1:-21799239 | MS.gene62857:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8.1:+21799185 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8.1:-21799756 | MS.gene62857:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8.1:+21799146 | None:intergenic |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8.1:-21800437 | MS.gene62857:CDS |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8.1:-21800636 | MS.gene62857:intron |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | 8.1:+21799458 | None:intergenic |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8.1:-21799033 | MS.gene62857:CDS |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8.1:+21798983 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8.1:-21800519 | MS.gene62857:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8.1:-21800094 | MS.gene62857:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8.1:+21799475 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8.1:-21799725 | MS.gene62857:CDS |
| ATGAGAACATTCCGAGAGAA+CGG | 0.537132 | 8.1:-21799240 | MS.gene62857:CDS |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8.1:-21799039 | MS.gene62857:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8.1:-21799858 | MS.gene62857:CDS |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8.1:-21801177 | MS.gene62857:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8.1:-21799029 | MS.gene62857:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8.1:+21800116 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | 8.1:-21799623 | MS.gene62857:intron |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8.1:-21799974 | MS.gene62857:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8.1:-21799785 | MS.gene62857:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8.1:-21799987 | MS.gene62857:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8.1:+21800056 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8.1:-21801190 | None:intergenic |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | 8.1:+21799614 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8.1:+21799766 | None:intergenic |
| GTCTCCGGTCGTAGTTATGT+CGG | 0.579009 | 8.1:+21799200 | None:intergenic |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8.1:+21799870 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8.1:-21799055 | MS.gene62857:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8.1:-21799056 | MS.gene62857:CDS |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8.1:-21799028 | MS.gene62857:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8.1:-21798993 | MS.gene62857:CDS |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8.1:-21800052 | MS.gene62857:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8.1:-21800123 | MS.gene62857:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8.1:+21799999 | None:intergenic |
| CGTGCCGACATAACTACGAC+CGG | 0.604421 | 8.1:-21799204 | MS.gene62857:CDS |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8.1:+21799641 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8.1:-21800168 | MS.gene62857:CDS |
| TCGGAATGTTCTCATTACCT+CGG | 0.619947 | 8.1:+21799248 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8.1:+21799833 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8.1:+21799812 | None:intergenic |
| CTATGCACCGAAGACAGACA+AGG | 0.623692 | 8.1:-21799279 | MS.gene62857:CDS |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8.1:-21800108 | MS.gene62857:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8.1:-21799677 | MS.gene62857:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8.1:-21800055 | MS.gene62857:CDS |
| CAGACAAGGGCTTCTAGCCG+AGG | 0.637281 | 8.1:-21799265 | MS.gene62857:CDS |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8.1:-21800058 | MS.gene62857:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8.1:-21799642 | MS.gene62857:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8.1:-21799754 | MS.gene62857:CDS |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | 8.1:+21799450 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8.1:-21800426 | MS.gene62857:intron |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8.1:-21800030 | MS.gene62857:CDS |
| TATGCACCGAAGACAGACAA+GGG | 0.703882 | 8.1:-21799278 | MS.gene62857:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8.1:-21799420 | MS.gene62857:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8.1:-21799641 | MS.gene62857:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | chr8.1:21799409-21799428 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | - | chr8.1:21800605-21800624 | MS.gene62857:intron | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | + | chr8.1:21800595-21800614 | None:intergenic | 10.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | chr8.1:21799930-21799949 | None:intergenic | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | chr8.1:21799383-21799402 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | chr8.1:21799783-21799802 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | chr8.1:21799528-21799547 | MS.gene62857:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | chr8.1:21800788-21800807 | None:intergenic | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | chr8.1:21799782-21799801 | None:intergenic | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | chr8.1:21799529-21799548 | MS.gene62857:intron | 15.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | chr8.1:21799092-21799111 | MS.gene62857:CDS | 15.0% |
| !!! | TAATGCAATGTTTTTTTTTT+TGG | - | chr8.1:21800551-21800570 | MS.gene62857:intron | 15.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | chr8.1:21799187-21799206 | MS.gene62857:CDS | 20.0% |
| !! | ATTATTAATTTCTCGAATGT+AGG | - | chr8.1:21800814-21800833 | MS.gene62857:intron | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | chr8.1:21799139-21799158 | None:intergenic | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | chr8.1:21799676-21799695 | None:intergenic | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | chr8.1:21801039-21801058 | MS.gene62857:intron | 20.0% |
| !! | TTATTAATTTCTCGAATGTA+GGG | - | chr8.1:21800815-21800834 | MS.gene62857:intron | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | chr8.1:21799733-21799752 | MS.gene62857:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | chr8.1:21799853-21799872 | MS.gene62857:CDS | 20.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | chr8.1:21799030-21799049 | None:intergenic | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | chr8.1:21799193-21799212 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | chr8.1:21799087-21799106 | None:intergenic | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | chr8.1:21801017-21801036 | MS.gene62857:intron | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | chr8.1:21800176-21800195 | MS.gene62857:intron | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | chr8.1:21799862-21799881 | MS.gene62857:CDS | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | chr8.1:21799186-21799205 | MS.gene62857:CDS | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | chr8.1:21800137-21800156 | None:intergenic | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | chr8.1:21799983-21800002 | MS.gene62857:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | chr8.1:21800134-21800153 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | chr8.1:21799539-21799558 | None:intergenic | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | chr8.1:21799490-21799509 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | chr8.1:21799380-21799399 | None:intergenic | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | chr8.1:21800340-21800359 | None:intergenic | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | chr8.1:21799449-21799468 | MS.gene62857:CDS | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | chr8.1:21799179-21799198 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | chr8.1:21799178-21799197 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | chr8.1:21800630-21800649 | MS.gene62857:intron | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | chr8.1:21799448-21799467 | MS.gene62857:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | chr8.1:21800208-21800227 | MS.gene62857:intron | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | chr8.1:21799822-21799841 | None:intergenic | 25.0% |
| AAAGCATATGTTTCATCTGA+TGG | - | chr8.1:21799686-21799705 | MS.gene62857:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | chr8.1:21799260-21799279 | None:intergenic | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | chr8.1:21801154-21801173 | MS.gene62857:CDS | 30.0% | |
| GAATCAGTTCGTCAAAAAAT+TGG | - | chr8.1:21801016-21801035 | MS.gene62857:intron | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | chr8.1:21800224-21800243 | MS.gene62857:intron | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | chr8.1:21799499-21799518 | None:intergenic | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | chr8.1:21799962-21799981 | MS.gene62857:CDS | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | chr8.1:21799126-21799145 | None:intergenic | 30.0% | |
| TTCCAATTCAACTATAGTCA+AGG | - | chr8.1:21799494-21799513 | MS.gene62857:CDS | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | chr8.1:21799232-21799251 | MS.gene62857:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | chr8.1:21800321-21800340 | None:intergenic | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | chr8.1:21799809-21799828 | MS.gene62857:CDS | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | chr8.1:21800626-21800645 | MS.gene62857:intron | 30.0% |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | chr8.1:21799372-21799391 | None:intergenic | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | chr8.1:21801006-21801025 | None:intergenic | 30.0% |
| AAGTAACTACCATGTATGCT+TGG | + | chr8.1:21800519-21800538 | None:intergenic | 35.0% | |
| AAGTCATCAAAAGGTAGAGA+GGG | - | chr8.1:21801075-21801094 | MS.gene62857:intron | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | chr8.1:21800263-21800282 | None:intergenic | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | chr8.1:21800143-21800162 | MS.gene62857:CDS | 35.0% | |
| ATGTTTCATCTGATGGAAGA+TGG | - | chr8.1:21799693-21799712 | MS.gene62857:CDS | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | chr8.1:21799624-21799643 | None:intergenic | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | chr8.1:21800126-21800145 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | chr8.1:21800272-21800291 | MS.gene62857:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | chr8.1:21801153-21801172 | MS.gene62857:CDS | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | chr8.1:21800142-21800161 | MS.gene62857:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | chr8.1:21800453-21800472 | MS.gene62857:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | chr8.1:21800405-21800424 | MS.gene62857:intron | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | chr8.1:21801070-21801089 | None:intergenic | 35.0% |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | chr8.1:21799622-21799641 | MS.gene62857:intron | 35.0% |
| AACCCCAATTAGTTCAGAAC+CGG | - | chr8.1:21800653-21800672 | MS.gene62857:CDS | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | chr8.1:21801101-21801120 | MS.gene62857:intron | 40.0% | |
| ATCTGATGGAAGATGGTTCA+TGG | - | chr8.1:21799700-21799719 | MS.gene62857:CDS | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | chr8.1:21800890-21800909 | MS.gene62857:intron | 40.0% | |
| CAAGTCATCAAAAGGTAGAG+AGG | - | chr8.1:21801074-21801093 | MS.gene62857:intron | 40.0% | |
| CAATTCTGTACAGTCACTAC+CGG | + | chr8.1:21800367-21800386 | None:intergenic | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | chr8.1:21800489-21800508 | MS.gene62857:CDS | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | chr8.1:21801097-21801116 | MS.gene62857:intron | 40.0% | |
| GCTAAAGTATGGACTCACAA+TGG | - | chr8.1:21800100-21800119 | MS.gene62857:CDS | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | chr8.1:21800366-21800385 | MS.gene62857:intron | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | chr8.1:21799172-21799191 | None:intergenic | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | chr8.1:21800488-21800507 | MS.gene62857:CDS | 40.0% | |
| TCGGAATGTTCTCATTACCT+CGG | + | chr8.1:21800885-21800904 | None:intergenic | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | chr8.1:21800375-21800394 | MS.gene62857:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | chr8.1:21801150-21801169 | None:intergenic | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | chr8.1:21800904-21800923 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | chr8.1:21800968-21800987 | MS.gene62857:intron | 40.0% | |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | chr8.1:21801066-21801085 | MS.gene62857:intron | 40.0% |
| ! | TTTCTCGAATGTAGGGTGTT+AGG | - | chr8.1:21800822-21800841 | MS.gene62857:intron | 40.0% |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | chr8.1:21800345-21800364 | MS.gene62857:intron | 40.0% |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | chr8.1:21800051-21800070 | MS.gene62857:CDS | 40.0% |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | chr8.1:21799611-21799630 | MS.gene62857:intron | 40.0% |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | chr8.1:21800997-21801016 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | chr8.1:21800998-21801017 | None:intergenic | 40.0% |
| AACATTTGCAGCCAAGTCTC+CGG | + | chr8.1:21800948-21800967 | None:intergenic | 45.0% | |
| AAGAAGGAAGACACGAACCT+AGG | + | chr8.1:21799014-21799033 | None:intergenic | 45.0% | |
| AAGGGTTGACCAAGCATACA+TGG | - | chr8.1:21800507-21800526 | MS.gene62857:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | chr8.1:21800715-21800734 | MS.gene62857:intron | 45.0% | |
| AGTAGAGAGAAGATCATGCG+AGG | - | chr8.1:21800710-21800729 | MS.gene62857:intron | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | chr8.1:21800017-21800036 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | chr8.1:21800303-21800322 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | chr8.1:21800365-21800384 | MS.gene62857:intron | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | chr8.1:21800007-21800026 | MS.gene62857:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | chr8.1:21800374-21800393 | MS.gene62857:intron | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | chr8.1:21801091-21801110 | MS.gene62857:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | chr8.1:21801100-21801119 | MS.gene62857:intron | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | chr8.1:21799704-21799723 | MS.gene62857:CDS | 45.0% | |
| GGTCTGCAAACATCATTTGG+TGG | + | chr8.1:21800300-21800319 | None:intergenic | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | chr8.1:21800376-21800395 | MS.gene62857:intron | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | chr8.1:21799997-21800016 | MS.gene62857:CDS | 45.0% | |
| TAGAAGCCCTTGTCTGTCTT+CGG | + | chr8.1:21800861-21800880 | None:intergenic | 45.0% | |
| TATGCACCGAAGACAGACAA+GGG | - | chr8.1:21800852-21800871 | MS.gene62857:intron | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | chr8.1:21801102-21801121 | MS.gene62857:intron | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | chr8.1:21800006-21800025 | MS.gene62857:CDS | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | chr8.1:21800891-21800910 | MS.gene62857:intron | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | chr8.1:21799270-21799289 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | chr8.1:21800089-21800108 | MS.gene62857:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | chr8.1:21800286-21800305 | None:intergenic | 45.0% |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | chr8.1:21798994-21799013 | MS.gene62857:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | chr8.1:21800156-21800175 | MS.gene62857:CDS | 45.0% |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | chr8.1:21800492-21800511 | None:intergenic | 45.0% |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | chr8.1:21800658-21800677 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | + | chr8.1:21800683-21800702 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | chr8.1:21800659-21800678 | None:intergenic | 45.0% |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | chr8.1:21799288-21799307 | None:intergenic | 5.0% |
| CACCACATCACATTGCAGCT+CGG | + | chr8.1:21800077-21800096 | None:intergenic | 50.0% | |
| CATAACTACGACCGGAGACT+TGG | - | chr8.1:21800934-21800953 | MS.gene62857:intron | 50.0% | |
| CTATGCACCGAAGACAGACA+AGG | - | chr8.1:21800851-21800870 | MS.gene62857:intron | 50.0% | |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | chr8.1:21801137-21801156 | MS.gene62857:CDS | 50.0% | |
| GTCTCCGGTCGTAGTTATGT+CGG | + | chr8.1:21800933-21800952 | None:intergenic | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | chr8.1:21800987-21801006 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | chr8.1:21801121-21801140 | MS.gene62857:intron | 50.0% |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | chr8.1:21800660-21800679 | None:intergenic | 50.0% |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | chr8.1:21800036-21800055 | MS.gene62857:CDS | 50.0% |
| CGAGCTGCAATGTGATGTGG+TGG | - | chr8.1:21800075-21800094 | MS.gene62857:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | chr8.1:21800078-21800097 | MS.gene62857:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | + | chr8.1:21800675-21800694 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACGAC+CGG | - | chr8.1:21800926-21800945 | MS.gene62857:intron | 55.0% |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | chr8.1:21800022-21800041 | MS.gene62857:CDS | 55.0% |
| CAGACAAGGGCTTCTAGCCG+AGG | - | chr8.1:21800865-21800884 | MS.gene62857:intron | 60.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | - | chr8.1:21800072-21800091 | MS.gene62857:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21798954 | 21801198 | 21798954 | ID=MS.gene62857 |
| chr8.1 | mRNA | 21798954 | 21801198 | 21798954 | ID=MS.gene62857.t1;Parent=MS.gene62857 |
| chr8.1 | exon | 21801137 | 21801198 | 21801137 | ID=MS.gene62857.t1.exon1;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21801137 | 21801198 | 21801137 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21800637 | 21800682 | 21800637 | ID=MS.gene62857.t1.exon2;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21800637 | 21800682 | 21800637 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21800427 | 21800541 | 21800427 | ID=MS.gene62857.t1.exon3;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21800427 | 21800541 | 21800427 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21800278 | 21800345 | 21800278 | ID=MS.gene62857.t1.exon4;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21800278 | 21800345 | 21800278 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21799624 | 21800190 | 21799624 | ID=MS.gene62857.t1.exon5;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21799624 | 21800190 | 21799624 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21799421 | 21799525 | 21799421 | ID=MS.gene62857.t1.exon6;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21799421 | 21799525 | 21799421 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| chr8.1 | exon | 21798954 | 21799316 | 21798954 | ID=MS.gene62857.t1.exon7;Parent=MS.gene62857.t1 |
| chr8.1 | CDS | 21798954 | 21799316 | 21798954 | ID=cds.MS.gene62857.t1;Parent=MS.gene62857.t1 |
| Gene Sequence |
| Protein sequence |
