Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62869.t1 | XP_024638892.1 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 1.40E-123 | 452.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62869.t1 | O22152 | 60.8 | 227 | 78 | 6 | 1 | 219 | 6 | 229 | 2.9e-66 | 253.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62869.t1 | G7JK46 | 98.6 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 9.2e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62869.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050581 | MS.gene62869 | 0.880274 | 6.28E-70 | -1.69E-46 |
| MS.gene060005 | MS.gene62869 | 0.824304 | 8.68E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62869.t1 | MTR_4g101660 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 2.92e-162 | 446 |
| MS.gene62869.t1 | MTR_4g025900 | 70.792 | 202 | 52 | 5 | 20 | 219 | 25 | 221 | 5.07e-90 | 264 |
| MS.gene62869.t1 | MTR_2g087740 | 49.510 | 204 | 91 | 6 | 8 | 209 | 2 | 195 | 1.93e-56 | 178 |
| MS.gene62869.t1 | MTR_4g114730 | 53.333 | 180 | 64 | 5 | 7 | 182 | 2 | 165 | 4.57e-55 | 174 |
| MS.gene62869.t1 | MTR_4g050300 | 49.010 | 202 | 79 | 7 | 9 | 209 | 1 | 179 | 1.30e-49 | 160 |
| MS.gene62869.t1 | MTR_5g034030 | 49.686 | 159 | 71 | 4 | 18 | 175 | 12 | 162 | 3.62e-45 | 150 |
| MS.gene62869.t1 | MTR_5g046230 | 41.916 | 167 | 78 | 3 | 9 | 174 | 7 | 155 | 2.11e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62869.t1 | AT2G45190 | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.50e-82 | 245 |
| MS.gene62869.t1 | AT4G00180 | 61.504 | 226 | 63 | 10 | 12 | 217 | 17 | 238 | 1.61e-73 | 223 |
| MS.gene62869.t1 | AT4G00180 | 60.190 | 211 | 60 | 10 | 27 | 217 | 1 | 207 | 3.42e-62 | 193 |
| MS.gene62869.t1 | AT2G26580 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.57e-56 | 177 |
| MS.gene62869.t1 | AT2G26580 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.57e-56 | 177 |
| MS.gene62869.t1 | AT1G08465 | 50.515 | 194 | 79 | 4 | 17 | 209 | 7 | 184 | 6.22e-55 | 174 |
| MS.gene62869.t1 | AT2G45190 | 57.143 | 168 | 61 | 6 | 60 | 219 | 1 | 165 | 3.60e-54 | 171 |
| MS.gene62869.t1 | AT1G23420 | 46.286 | 175 | 90 | 3 | 6 | 178 | 8 | 180 | 6.38e-39 | 134 |
| MS.gene62869.t1 | AT1G23420 | 46.286 | 175 | 90 | 3 | 6 | 178 | 39 | 211 | 3.48e-38 | 133 |
| MS.gene62869.t1 | AT1G69180 | 45.000 | 160 | 69 | 3 | 15 | 174 | 16 | 156 | 6.13e-34 | 120 |
Find 58 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGTTCATCATAAAATT+TGG | 0.162315 | 8.1:-22029254 | None:intergenic |
| AATCATTTGGTGCATTTATA+TGG | 0.220470 | 8.1:-22029271 | None:intergenic |
| ACCAGAAGGTTATGATGATT+TGG | 0.269243 | 8.1:-22029078 | None:intergenic |
| CCAGAAGGTTATGATGATTT+GGG | 0.306156 | 8.1:-22029077 | None:intergenic |
| ATAAAATTTGGAGCTGGGTT+TGG | 0.340235 | 8.1:-22029242 | None:intergenic |
| GCTTCCCTGTGGGTTATATC+AGG | 0.345088 | 8.1:-22030502 | None:intergenic |
| CCCAAATCATCATAACCTTC+TGG | 0.358123 | 8.1:+22029077 | MS.gene62869:CDS |
| GTCTTCTTCATAGTCTGATC+AGG | 0.388325 | 8.1:-22031376 | None:intergenic |
| ATAGAGATTGATGCATTAGT+AGG | 0.390762 | 8.1:-22031620 | None:intergenic |
| CACTTCCCACACATTCACTT+TGG | 0.432093 | 8.1:+22031346 | MS.gene62869:CDS |
| TGTCCCAAATGAAACTGATT+GGG | 0.435332 | 8.1:-22029042 | None:intergenic |
| TTCAACCACAACATTATCCT+TGG | 0.449974 | 8.1:+22028727 | MS.gene62869:CDS |
| GTGTCCCAAATGAAACTGAT+TGG | 0.468609 | 8.1:-22029043 | None:intergenic |
| AAAGGAGGATCATACATTCT+TGG | 0.469847 | 8.1:-22030539 | None:intergenic |
| AGTAATGCACGCATGTTGAC+TGG | 0.472196 | 8.1:-22029009 | None:intergenic |
| TTCATCATAAAATTTGGAGC+TGG | 0.473136 | 8.1:-22029248 | None:intergenic |
| GGAGGCATAGAGAAATCATT+TGG | 0.480020 | 8.1:-22029284 | None:intergenic |
| TCACGTCTGTTTATGATTGG+TGG | 0.480315 | 8.1:-22029338 | None:intergenic |
| TCATCATAAAATTTGGAGCT+GGG | 0.482099 | 8.1:-22029247 | None:intergenic |
| ATCTCACGTCTGTTTATGAT+TGG | 0.489279 | 8.1:-22029341 | None:intergenic |
| ATTCTTGGCAGCTGCGCTGA+AGG | 0.503305 | 8.1:-22030524 | None:intergenic |
| CAAAGTGAATGTGTGGGAAG+TGG | 0.524635 | 8.1:-22031345 | None:intergenic |
| CTGTTTATGATTGGTGGTCG+TGG | 0.531680 | 8.1:-22029332 | None:intergenic |
| TGCGCTGAAGGCTTCCCTGT+GGG | 0.539083 | 8.1:-22030512 | None:intergenic |
| CAGATTCTGATGAAAGATGC+GGG | 0.541160 | 8.1:+22031565 | MS.gene62869:CDS |
| AACAAAGTTGCTCGGAAGGA+GGG | 0.547749 | 8.1:-22028757 | None:intergenic |
| GGAAGGAGGGAGGTGGTCCA+AGG | 0.549892 | 8.1:-22028744 | None:intergenic |
| GAAGACAAATGTGTGCCAGC+AGG | 0.553012 | 8.1:+22031393 | MS.gene62869:CDS |
| CTGCGCTGAAGGCTTCCCTG+TGG | 0.555021 | 8.1:-22030513 | None:intergenic |
| GATGTTTCATACAGCAAGGA+TGG | 0.571365 | 8.1:-22028804 | None:intergenic |
| TAGAGATTGATGCATTAGTA+GGG | 0.577948 | 8.1:-22031619 | None:intergenic |
| GGATAATGTTGTGGTTGAAG+AGG | 0.579637 | 8.1:-22028723 | None:intergenic |
| GTCTTGAACAAGCTTGTGCA+AGG | 0.580384 | 8.1:-22028949 | None:intergenic |
| TAACAAAGTTGCTCGGAAGG+AGG | 0.582448 | 8.1:-22028758 | None:intergenic |
| GTTGCTCGGAAGGAGGGAGG+TGG | 0.583306 | 8.1:-22028751 | None:intergenic |
| GATTGACAGACTTAATGCGT+TGG | 0.585391 | 8.1:-22030480 | None:intergenic |
| ACATAACAAAGTTGCTCGGA+AGG | 0.586092 | 8.1:-22028761 | None:intergenic |
| AAAGTGAATGTGTGGGAAGT+GGG | 0.594462 | 8.1:-22031344 | None:intergenic |
| CTCATCAGCTACAGTCCTAG+TGG | 0.598065 | 8.1:-22029306 | None:intergenic |
| AGCAAGGATGGTGTCACAGA+TGG | 0.603099 | 8.1:-22028792 | None:intergenic |
| TCAATCCTGATATAACCCAC+AGG | 0.603889 | 8.1:+22030497 | MS.gene62869:CDS |
| TCATCAGCTACAGTCCTAGT+GGG | 0.606377 | 8.1:-22029305 | None:intergenic |
| ATTTCTCTATGCCTCCCACT+AGG | 0.608537 | 8.1:+22029291 | MS.gene62869:CDS |
| TCAGATTCTGATGAAAGATG+CGG | 0.615278 | 8.1:+22031564 | MS.gene62869:CDS |
| CAGAAGGTTATGATGATTTG+GGG | 0.623732 | 8.1:-22029076 | None:intergenic |
| GTGGACATAACAAAGTTGCT+CGG | 0.624197 | 8.1:-22028765 | None:intergenic |
| ATGAGACCAAAGTGAATGTG+TGG | 0.636661 | 8.1:-22031352 | None:intergenic |
| GTCCCAAATGAAACTGATTG+GGG | 0.640416 | 8.1:-22029041 | None:intergenic |
| CAATCCTGATATAACCCACA+GGG | 0.644329 | 8.1:+22030498 | MS.gene62869:CDS |
| AAAGTTGCTCGGAAGGAGGG+AGG | 0.666622 | 8.1:-22028754 | None:intergenic |
| ATGAAGCGATTGTATGCTGA+GGG | 0.673566 | 8.1:-22030309 | None:intergenic |
| TCAGCTACAGTCCTAGTGGG+AGG | 0.678197 | 8.1:-22029302 | None:intergenic |
| TGGTGTCACAGATGGTGCAG+TGG | 0.683501 | 8.1:-22028784 | None:intergenic |
| AAGACTGTTACTGTGAGATG+CGG | 0.688688 | 8.1:+22028967 | MS.gene62869:CDS |
| TGAGACCAAAGTGAATGTGT+GGG | 0.708380 | 8.1:-22031351 | None:intergenic |
| GTGGTCCAAGGATAATGTTG+TGG | 0.713676 | 8.1:-22028732 | None:intergenic |
| GATGAAGCGATTGTATGCTG+AGG | 0.735800 | 8.1:-22030310 | None:intergenic |
| TCCCAAATGAAACTGATTGG+GGG | 0.774348 | 8.1:-22029040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAAAATA+TGG | + | chr8.1:22031018-22031037 | MS.gene62869:intron | 0.0% |
| !! | AAAAAAATATTTACTTTATG+TGG | + | chr8.1:22029594-22029613 | MS.gene62869:intron | 10.0% |
| !! | AGTTCAAATTAATAAATTAT+GGG | + | chr8.1:22029492-22029511 | MS.gene62869:intron | 10.0% |
| !! | ATATATTATATATGTAAGAT+GGG | + | chr8.1:22030003-22030022 | MS.gene62869:intron | 10.0% |
| !! | ATGTAAATATCTATAAAAAA+AGG | + | chr8.1:22031169-22031188 | MS.gene62869:intron | 10.0% |
| !! | ATTCATTTATTTATAAGTTA+AGG | - | chr8.1:22030568-22030587 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAAAAAAATGA+AGG | - | chr8.1:22028918-22028937 | None:intergenic | 10.0% |
| !! | TATATATTATATATGTAAGA+TGG | + | chr8.1:22030002-22030021 | MS.gene62869:intron | 10.0% |
| !!! | ATATTGATTAAATAAAGTTA+AGG | + | chr8.1:22030877-22030896 | MS.gene62869:intron | 10.0% |
| !!! | GAAATTATTTATTGATTTTA+GGG | + | chr8.1:22029851-22029870 | MS.gene62869:intron | 10.0% |
| !!! | TCATTTTTTTTTTTTTTTTC+AGG | + | chr8.1:22028918-22028937 | MS.gene62869:intron | 10.0% |
| !! | AAAAAAAAATTAAGGAGAAA+AGG | + | chr8.1:22030788-22030807 | MS.gene62869:intron | 15.0% |
| !! | AACAGATTAATTAAATTGAA+AGG | + | chr8.1:22030179-22030198 | MS.gene62869:intron | 15.0% |
| !! | CATAAAATTAATCAAGATTA+AGG | - | chr8.1:22030983-22031002 | None:intergenic | 15.0% |
| !! | CTCTCAAAAAAAAAAAATTA+AGG | + | chr8.1:22030780-22030799 | MS.gene62869:intron | 15.0% |
| !! | GAGTTCAAATTAATAAATTA+TGG | + | chr8.1:22029491-22029510 | MS.gene62869:intron | 15.0% |
| !! | GTTATATTTGCATAAAAAAA+TGG | - | chr8.1:22028890-22028909 | None:intergenic | 15.0% |
| !! | TATATTATATATGTAAGATG+GGG | + | chr8.1:22030004-22030023 | MS.gene62869:intron | 15.0% |
| !! | TTAATGTATGGTATATAAAA+TGG | - | chr8.1:22029143-22029162 | None:intergenic | 15.0% |
| !!! | AGTTAAAAAAAAAAGTACAA+TGG | - | chr8.1:22030356-22030375 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTTTTTTGAG+AGG | - | chr8.1:22030782-22030801 | None:intergenic | 15.0% |
| !!! | GATTTTGATATATATGATAA+CGG | + | chr8.1:22030248-22030267 | MS.gene62869:intron | 15.0% |
| !!! | GGAAATTATTTATTGATTTT+AGG | + | chr8.1:22029850-22029869 | MS.gene62869:intron | 15.0% |
| !!! | TAGATATTTACATGTTTTAT+AGG | - | chr8.1:22031162-22031181 | None:intergenic | 15.0% |
| !! | AAAATTAATAACCCTAACTT+GGG | + | chr8.1:22030622-22030641 | MS.gene62869:intron | 20.0% |
| !! | AATAATACCTCATGAAAAAA+AGG | + | chr8.1:22030155-22030174 | MS.gene62869:intron | 20.0% |
| !! | AATTAAGAGTAAAAAAGAAG+AGG | - | chr8.1:22029119-22029138 | None:intergenic | 20.0% |
| !! | ACAATTCAAAATGAATGATA+TGG | + | chr8.1:22031261-22031280 | MS.gene62869:intron | 20.0% |
| !! | ATATGGTTCATCATAAAATT+TGG | - | chr8.1:22029257-22029276 | None:intergenic | 20.0% |
| !! | ATGTGAAGTAAATCTAAATA+CGG | + | chr8.1:22030437-22030456 | MS.gene62869:intron | 20.0% |
| !! | ATTTATAAGTTAAGGAGAAA+AGG | - | chr8.1:22030560-22030579 | None:intergenic | 20.0% |
| !! | CAACTATATGAAAATATAAC+AGG | + | chr8.1:22030221-22030240 | MS.gene62869:intron | 20.0% |
| !! | TAAAATTAATAACCCTAACT+TGG | + | chr8.1:22030621-22030640 | MS.gene62869:intron | 20.0% |
| !! | TAAATAAAGTTAAGGAGAAA+AGG | + | chr8.1:22030885-22030904 | MS.gene62869:intron | 20.0% |
| !! | TAATCAAGATTAAGGATAAA+AGG | - | chr8.1:22030975-22030994 | None:intergenic | 20.0% |
| !! | TTCTATGATAAGCTAAATTA+AGG | - | chr8.1:22029816-22029835 | None:intergenic | 20.0% |
| !!! | AATCATGGACTAAAAAAAAT+TGG | - | chr8.1:22031220-22031239 | None:intergenic | 20.0% |
| !!! | ATAGAGACATTATATCTTTT+AGG | - | chr8.1:22029753-22029772 | None:intergenic | 20.0% |
| !!! | CTGTTATATTTTCATATAGT+TGG | - | chr8.1:22030223-22030242 | None:intergenic | 20.0% |
| !!! | TAGAGACATTATATCTTTTA+GGG | - | chr8.1:22029752-22029771 | None:intergenic | 20.0% |
| !!! | TGATCTTCTAAAATATTGTT+CGG | + | chr8.1:22029443-22029462 | MS.gene62869:intron | 20.0% |
| ! | AAAGTATGTCACATATCAAA+AGG | - | chr8.1:22031309-22031328 | None:intergenic | 25.0% |
| ! | CAGAAATGAAAAAAAGTCAT+GGG | - | chr8.1:22031496-22031515 | None:intergenic | 25.0% |
| ! | GTTGCAAAGTAATTAATGTA+TGG | - | chr8.1:22029155-22029174 | None:intergenic | 25.0% |
| ! | TAAGTATCAACTGAATCATA+AGG | + | chr8.1:22030112-22030131 | MS.gene62869:intron | 25.0% |
| ! | TCAGAAATGAAAAAAAGTCA+TGG | - | chr8.1:22031497-22031516 | None:intergenic | 25.0% |
| ! | TTAAAGTAAGGAATGGTTTA+AGG | - | chr8.1:22029719-22029738 | None:intergenic | 25.0% |
| !! | ATTAAGGATAAAAGGTACAA+TGG | - | chr8.1:22030967-22030986 | None:intergenic | 25.0% |
| !! | CATTTTGAATTGTTGAAACA+GGG | - | chr8.1:22031254-22031273 | None:intergenic | 25.0% |
| !! | GACATTTTTCACAAAGAAAA+AGG | + | chr8.1:22031123-22031142 | MS.gene62869:intron | 25.0% |
| !! | TCATTTTGAATTGTTGAAAC+AGG | - | chr8.1:22031255-22031274 | None:intergenic | 25.0% |
| !! | TGTCCTTTTTGTTAATTTCT+CGG | + | chr8.1:22029914-22029933 | MS.gene62869:intron | 25.0% |
| !! | TTACTTTGTTTGAGTAACTT+AGG | + | chr8.1:22029377-22029396 | MS.gene62869:intron | 25.0% |
| !!! | AATCAATTTTTTTTTCTCCG+AGG | + | chr8.1:22031059-22031078 | MS.gene62869:intron | 25.0% |
| !!! | AATCATTTGGTGCATTTATA+TGG | - | chr8.1:22029274-22029293 | None:intergenic | 25.0% |
| !!! | CAAATTTTAGTTGAAGTTGA+TGG | + | chr8.1:22030692-22030711 | MS.gene62869:intron | 25.0% |
| !!! | TATGGTTTTCTAGTTCATTT+TGG | + | chr8.1:22031279-22031298 | MS.gene62869:intron | 25.0% |
| ATAGAGATGAAAGCAAACTT+AGG | + | chr8.1:22029952-22029971 | MS.gene62869:intron | 30.0% | |
| ATGTCTCTATAAGTAATGAC+AGG | + | chr8.1:22029763-22029782 | MS.gene62869:intron | 30.0% | |
| CATAGAACAGTTTGTAATAC+TGG | + | chr8.1:22029829-22029848 | MS.gene62869:intron | 30.0% | |
| CTTTAAACAACTACTATTCC+GGG | - | chr8.1:22030075-22030094 | None:intergenic | 30.0% | |
| GTACCGAGAAATTAACAAAA+AGG | - | chr8.1:22029920-22029939 | None:intergenic | 30.0% | |
| TATAAGTTAAGGAGAAAAGG+AGG | - | chr8.1:22030557-22030576 | None:intergenic | 30.0% | |
| TGTATCATTCTTCTTTATCC+AGG | + | chr8.1:22031531-22031550 | MS.gene62869:intron | 30.0% | |
| TTTAAACAACTACTATTCCG+GGG | - | chr8.1:22030074-22030093 | None:intergenic | 30.0% | |
| ! | AAAAGGAAGGAAGTCTTTTA+TGG | + | chr8.1:22029677-22029696 | MS.gene62869:intron | 30.0% |
| ! | AAATTGAGAGTATAACCAGA+AGG | - | chr8.1:22029095-22029114 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTGGTAAAAGGA+AGG | + | chr8.1:22029664-22029683 | MS.gene62869:intron | 30.0% |
| ! | GCTTTAAACAACTACTATTC+CGG | - | chr8.1:22030076-22030095 | None:intergenic | 30.0% |
| ! | TCATCATAAAATTTGGAGCT+GGG | - | chr8.1:22029250-22029269 | None:intergenic | 30.0% |
| ! | TCTAAGTAGTATAGCTTTTG+TGG | + | chr8.1:22029180-22029199 | MS.gene62869:intron | 30.0% |
| ! | TGGTGGATAGAAAAAAGATA+GGG | + | chr8.1:22030035-22030054 | MS.gene62869:intron | 30.0% |
| ! | TTCATCATAAAATTTGGAGC+TGG | - | chr8.1:22029251-22029270 | None:intergenic | 30.0% |
| ! | TTCCACTTTCTTTTGGTAAA+AGG | + | chr8.1:22029660-22029679 | MS.gene62869:intron | 30.0% |
| ! | TTCCTTTTACCAAAAGAAAG+TGG | - | chr8.1:22029665-22029684 | None:intergenic | 30.0% |
| ! | TTTATGTGGTTGCTATTGAT+TGG | + | chr8.1:22029608-22029627 | MS.gene62869:intron | 30.0% |
| ! | TTTTATGCTTCTGCTAATCT+TGG | + | chr8.1:22031589-22031608 | MS.gene62869:CDS | 30.0% |
| !! | AAACATTTTTCAGCGAGAAT+AGG | - | chr8.1:22031444-22031463 | None:intergenic | 30.0% |
| !! | AACATTTTTCAGCGAGAATA+GGG | - | chr8.1:22031443-22031462 | None:intergenic | 30.0% |
| !! | CTTCTAAAATATTGTTCGGT+TGG | + | chr8.1:22029447-22029466 | MS.gene62869:intron | 30.0% |
| !!! | AAAAACCATCGTTTTGATTG+AGG | - | chr8.1:22029407-22029426 | None:intergenic | 30.0% |
| !!! | AAAACCATCGTTTTGATTGA+GGG | - | chr8.1:22029406-22029425 | None:intergenic | 30.0% |
| !!! | CATTTTTTTTTTCTTGCAGC+AGG | + | chr8.1:22029211-22029230 | MS.gene62869:intron | 30.0% |
| !!! | TCTGTTACCTTTTTTTCATG+AGG | - | chr8.1:22030165-22030184 | None:intergenic | 30.0% |
| AAAGGAGGATCATACATTCT+TGG | - | chr8.1:22030542-22030561 | None:intergenic | 35.0% | |
| ACCAGAAGGTTATGATGATT+TGG | - | chr8.1:22029081-22029100 | None:intergenic | 35.0% | |
| ATCTCACGTCTGTTTATGAT+TGG | - | chr8.1:22029344-22029363 | None:intergenic | 35.0% | |
| CAGAAGGTTATGATGATTTG+GGG | - | chr8.1:22029079-22029098 | None:intergenic | 35.0% | |
| CCAGAAGGTTATGATGATTT+GGG | - | chr8.1:22029080-22029099 | None:intergenic | 35.0% | |
| TAGTGATGTTTCATACAGCA+AGG | - | chr8.1:22028811-22028830 | None:intergenic | 35.0% | |
| TCAGATTCTGATGAAAGATG+CGG | + | chr8.1:22031564-22031583 | MS.gene62869:CDS | 35.0% | |
| TCATTCTTCTTTATCCAGGA+AGG | + | chr8.1:22031535-22031554 | MS.gene62869:intron | 35.0% | |
| TGCTATGATAATTTACCTGC+TGG | - | chr8.1:22031411-22031430 | None:intergenic | 35.0% | |
| TGTAAGATGGGGAAAATATG+TGG | + | chr8.1:22030015-22030034 | MS.gene62869:intron | 35.0% | |
| TGTCCCAAATGAAACTGATT+GGG | - | chr8.1:22029045-22029064 | None:intergenic | 35.0% | |
| TTAAACAACTACTATTCCGG+GGG | - | chr8.1:22030073-22030092 | None:intergenic | 35.0% | |
| TTCAACCACAACATTATCCT+TGG | + | chr8.1:22028727-22028746 | MS.gene62869:CDS | 35.0% | |
| TTGCTTTCATCTCTATATGC+TGG | - | chr8.1:22029948-22029967 | None:intergenic | 35.0% | |
| ! | ATAAAATTTGGAGCTGGGTT+TGG | - | chr8.1:22029245-22029264 | None:intergenic | 35.0% |
| ! | CTAAGCTAGTGTTGAAAAGT+GGG | - | chr8.1:22028851-22028870 | None:intergenic | 35.0% |
| ! | GGGTTCAAGATCTGAATTTT+CGG | + | chr8.1:22030642-22030661 | MS.gene62869:intron | 35.0% |
| ! | TAAGCTAGTGTTGAAAAGTG+GGG | - | chr8.1:22028850-22028869 | None:intergenic | 35.0% |
| ! | TTTCAACACTAGCTTAGCTA+GGG | + | chr8.1:22028854-22028873 | MS.gene62869:intron | 35.0% |
| !! | ACATTTTTCAGCGAGAATAG+GGG | - | chr8.1:22031442-22031461 | None:intergenic | 35.0% |
| !! | GCACACTTTAAAGTAAGGAA+TGG | - | chr8.1:22029726-22029745 | None:intergenic | 35.0% |
| !! | GTGGTGGATAGAAAAAAGAT+AGG | + | chr8.1:22030034-22030053 | MS.gene62869:intron | 35.0% |
| !! | TTTTCAACACTAGCTTAGCT+AGG | + | chr8.1:22028853-22028872 | MS.gene62869:intron | 35.0% |
| !!! | TTTTTTTTTCTTGCAGCAGG+AGG | + | chr8.1:22029214-22029233 | MS.gene62869:intron | 35.0% |
| AAACAAAAGCCTCGTGAAGA+AGG | - | chr8.1:22029883-22029902 | None:intergenic | 40.0% | |
| AAAGTGAATGTGTGGGAAGT+GGG | - | chr8.1:22031347-22031366 | None:intergenic | 40.0% | |
| AAATGAAACTGATTGGGGGA+TGG | - | chr8.1:22029039-22029058 | None:intergenic | 40.0% | |
| AACAAAAGCCTCGTGAAGAA+GGG | - | chr8.1:22029882-22029901 | None:intergenic | 40.0% | |
| AAGAAAGTGGAACAAGACCA+AGG | - | chr8.1:22029652-22029671 | None:intergenic | 40.0% | |
| AAGACTGTTACTGTGAGATG+CGG | + | chr8.1:22028967-22028986 | MS.gene62869:CDS | 40.0% | |
| AAGATGGGGAAAATATGTGG+TGG | + | chr8.1:22030018-22030037 | MS.gene62869:intron | 40.0% | |
| AAGGAGAAAAGGATGCTCTT+TGG | + | chr8.1:22030799-22030818 | MS.gene62869:intron | 40.0% | |
| ACATAACAAAGTTGCTCGGA+AGG | - | chr8.1:22028764-22028783 | None:intergenic | 40.0% | |
| ACATACTTTCTGTGTGACAG+TGG | + | chr8.1:22031320-22031339 | MS.gene62869:intron | 40.0% | |
| AGAAAGTGGAACAAGACCAA+GGG | - | chr8.1:22029651-22029670 | None:intergenic | 40.0% | |
| ATCCCCCAATCAGTTTCATT+TGG | + | chr8.1:22029038-22029057 | MS.gene62869:CDS | 40.0% | |
| ATGAAGCGATTGTATGCTGA+GGG | - | chr8.1:22030312-22030331 | None:intergenic | 40.0% | |
| ATGAGACCAAAGTGAATGTG+TGG | - | chr8.1:22031355-22031374 | None:intergenic | 40.0% | |
| CAATCCTGATATAACCCACA+GGG | + | chr8.1:22030498-22030517 | MS.gene62869:CDS | 40.0% | |
| CAGATCTTGAACCCAAGTTA+GGG | - | chr8.1:22030636-22030655 | None:intergenic | 40.0% | |
| CAGATTCTGATGAAAGATGC+GGG | + | chr8.1:22031565-22031584 | MS.gene62869:CDS | 40.0% | |
| CATACTTTCTGTGTGACAGT+GGG | + | chr8.1:22031321-22031340 | MS.gene62869:intron | 40.0% | |
| CCCAAATCATCATAACCTTC+TGG | + | chr8.1:22029077-22029096 | MS.gene62869:CDS | 40.0% | |
| GATGTTTCATACAGCAAGGA+TGG | - | chr8.1:22028807-22028826 | None:intergenic | 40.0% | |
| GATTGACAGACTTAATGCGT+TGG | - | chr8.1:22030483-22030502 | None:intergenic | 40.0% | |
| GGATAATGTTGTGGTTGAAG+AGG | - | chr8.1:22028726-22028745 | None:intergenic | 40.0% | |
| GTCCCAAATGAAACTGATTG+GGG | - | chr8.1:22029044-22029063 | None:intergenic | 40.0% | |
| GTCTTCTTCATAGTCTGATC+AGG | - | chr8.1:22031379-22031398 | None:intergenic | 40.0% | |
| GTGGACATAACAAAGTTGCT+CGG | - | chr8.1:22028768-22028787 | None:intergenic | 40.0% | |
| GTGTCCCAAATGAAACTGAT+TGG | - | chr8.1:22029046-22029065 | None:intergenic | 40.0% | |
| GTTTCCCTCAATCAAAACGA+TGG | + | chr8.1:22029399-22029418 | MS.gene62869:intron | 40.0% | |
| TCAATCCTGATATAACCCAC+AGG | + | chr8.1:22030497-22030516 | MS.gene62869:CDS | 40.0% | |
| TCACGTCTGTTTATGATTGG+TGG | - | chr8.1:22029341-22029360 | None:intergenic | 40.0% | |
| TCAGATCTTGAACCCAAGTT+AGG | - | chr8.1:22030637-22030656 | None:intergenic | 40.0% | |
| TCCCAAATGAAACTGATTGG+GGG | - | chr8.1:22029043-22029062 | None:intergenic | 40.0% | |
| TCCCCCAATCAGTTTCATTT+GGG | + | chr8.1:22029039-22029058 | MS.gene62869:CDS | 40.0% | |
| TGAATTGTTGAAACAGGGCA+GGG | - | chr8.1:22031249-22031268 | None:intergenic | 40.0% | |
| TGAGACCAAAGTGAATGTGT+GGG | - | chr8.1:22031354-22031373 | None:intergenic | 40.0% | |
| TTGAATTGTTGAAACAGGGC+AGG | - | chr8.1:22031250-22031269 | None:intergenic | 40.0% | |
| ! | GCTAAGCTAGTGTTGAAAAG+TGG | - | chr8.1:22028852-22028871 | None:intergenic | 40.0% |
| ! | GGAGGCATAGAGAAATCATT+TGG | - | chr8.1:22029287-22029306 | None:intergenic | 40.0% |
| ! | TTGATTGGACAGTGTTGTTG+AGG | + | chr8.1:22029623-22029642 | MS.gene62869:intron | 40.0% |
| !! | GGCATGCACACTTTAAAGTA+AGG | - | chr8.1:22029731-22029750 | None:intergenic | 40.0% |
| !! | TTGAAGTTGATGGTTCTCCT+CGG | + | chr8.1:22030702-22030721 | MS.gene62869:intron | 40.0% |
| !!! | GGTCTTGTTCCACTTTCTTT+TGG | + | chr8.1:22029653-22029672 | MS.gene62869:intron | 40.0% |
| AACAAAGTTGCTCGGAAGGA+GGG | - | chr8.1:22028760-22028779 | None:intergenic | 45.0% | |
| AGGGCAGGGAAATACAATCA+TGG | - | chr8.1:22031235-22031254 | None:intergenic | 45.0% | |
| AGTAATGCACGCATGTTGAC+TGG | - | chr8.1:22029012-22029031 | None:intergenic | 45.0% | |
| ATTTCTCTATGCCTCCCACT+AGG | + | chr8.1:22029291-22029310 | MS.gene62869:CDS | 45.0% | |
| CAAAGTGAATGTGTGGGAAG+TGG | - | chr8.1:22031348-22031367 | None:intergenic | 45.0% | |
| CACTTCCCACACATTCACTT+TGG | + | chr8.1:22031346-22031365 | MS.gene62869:CDS | 45.0% | |
| CTAAATACGGTCCATCTGCA+GGG | + | chr8.1:22030450-22030469 | MS.gene62869:intron | 45.0% | |
| GAATCTGATCATCTCCTTCC+TGG | - | chr8.1:22031552-22031571 | None:intergenic | 45.0% | |
| GATGAAGCGATTGTATGCTG+AGG | - | chr8.1:22030313-22030332 | None:intergenic | 45.0% | |
| GTCTTGAACAAGCTTGTGCA+AGG | - | chr8.1:22028952-22028971 | None:intergenic | 45.0% | |
| GTGGTCCAAGGATAATGTTG+TGG | - | chr8.1:22028735-22028754 | None:intergenic | 45.0% | |
| TAACAAAGTTGCTCGGAAGG+AGG | - | chr8.1:22028761-22028780 | None:intergenic | 45.0% | |
| TAAGCCGAGTATGCAAACCT+CGG | - | chr8.1:22031079-22031098 | None:intergenic | 45.0% | |
| TCATCAGCTACAGTCCTAGT+GGG | - | chr8.1:22029308-22029327 | None:intergenic | 45.0% | |
| TCTAAATACGGTCCATCTGC+AGG | + | chr8.1:22030449-22030468 | MS.gene62869:intron | 45.0% | |
| TTCTCCGAGGTTTGCATACT+CGG | + | chr8.1:22031072-22031091 | MS.gene62869:intron | 45.0% | |
| ! | CTAGTGTTGAAAAGTGGGGA+TGG | - | chr8.1:22028846-22028865 | None:intergenic | 45.0% |
| ! | CTGTTTATGATTGGTGGTCG+TGG | - | chr8.1:22029335-22029354 | None:intergenic | 45.0% |
| ! | GGAACTCTCTGTCTTTTCTC+TGG | - | chr8.1:22030291-22030310 | None:intergenic | 45.0% |
| CTCATCAGCTACAGTCCTAG+TGG | - | chr8.1:22029309-22029328 | None:intergenic | 50.0% | |
| GAAGACAAATGTGTGCCAGC+AGG | + | chr8.1:22031393-22031412 | MS.gene62869:CDS | 50.0% | |
| GTGAGAGACACTCATTACCG+AGG | - | chr8.1:22030722-22030741 | None:intergenic | 50.0% | |
| ! | CAGTGTTGTTGAGGTACCCT+TGG | + | chr8.1:22029632-22029651 | MS.gene62869:intron | 50.0% |
| ! | GCTTCCCTGTGGGTTATATC+AGG | - | chr8.1:22030505-22030524 | None:intergenic | 50.0% |
| !! | AGCAAGGATGGTGTCACAGA+TGG | - | chr8.1:22028795-22028814 | None:intergenic | 50.0% |
| !! | AGGGTACTTTTCTTCTCCCC+CGG | + | chr8.1:22030054-22030073 | MS.gene62869:intron | 50.0% |
| !!! | CTCTGTCTTTTCTCTGGAGC+TGG | - | chr8.1:22030285-22030304 | None:intergenic | 50.0% |
| AAAGTTGCTCGGAAGGAGGG+AGG | - | chr8.1:22028757-22028776 | None:intergenic | 55.0% | |
| ATTCTTGGCAGCTGCGCTGA+AGG | - | chr8.1:22030527-22030546 | None:intergenic | 55.0% | |
| TCAGCTACAGTCCTAGTGGG+AGG | - | chr8.1:22029305-22029324 | None:intergenic | 55.0% | |
| TTGGATCTCGTCCCTGCAGA+TGG | - | chr8.1:22030464-22030483 | None:intergenic | 55.0% | |
| !! | TGGTGTCACAGATGGTGCAG+TGG | - | chr8.1:22028787-22028806 | None:intergenic | 55.0% |
| TGCGCTGAAGGCTTCCCTGT+GGG | - | chr8.1:22030515-22030534 | None:intergenic | 60.0% | |
| CTGCGCTGAAGGCTTCCCTG+TGG | - | chr8.1:22030516-22030535 | None:intergenic | 65.0% | |
| GGAAGGAGGGAGGTGGTCCA+AGG | - | chr8.1:22028747-22028766 | None:intergenic | 65.0% | |
| GGGCACAGCCCTTCTTCACG+AGG | + | chr8.1:22029871-22029890 | MS.gene62869:intron | 65.0% | |
| GTTGCTCGGAAGGAGGGAGG+TGG | - | chr8.1:22028754-22028773 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 22028716 | 22031627 | 22028716 | ID=MS.gene62869 |
| chr8.1 | mRNA | 22028716 | 22031627 | 22028716 | ID=MS.gene62869.t1;Parent=MS.gene62869 |
| chr8.1 | exon | 22028716 | 22028814 | 22028716 | ID=MS.gene62869.t1.exon1;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22028716 | 22028814 | 22028716 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22028940 | 22029098 | 22028940 | ID=MS.gene62869.t1.exon2;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22028940 | 22029098 | 22028940 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22029230 | 22029356 | 22029230 | ID=MS.gene62869.t1.exon3;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22029230 | 22029356 | 22029230 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22030286 | 22030334 | 22030286 | ID=MS.gene62869.t1.exon4;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22030286 | 22030334 | 22030286 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22030471 | 22030546 | 22030471 | ID=MS.gene62869.t1.exon5;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22030471 | 22030546 | 22030471 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22031340 | 22031414 | 22031340 | ID=MS.gene62869.t1.exon6;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22031340 | 22031414 | 22031340 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| chr8.1 | exon | 22031553 | 22031627 | 22031553 | ID=MS.gene62869.t1.exon7;Parent=MS.gene62869.t1 |
| chr8.1 | CDS | 22031553 | 22031627 | 22031553 | ID=cds.MS.gene62869.t1;Parent=MS.gene62869.t1 |
| Gene Sequence |
| Protein sequence |
