Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63497.t1 | RHN68293.1 | 63.9 | 97 | 34 | 1 | 85 | 181 | 16 | 111 | 4.10E-17 | 99 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63497.t1 | A0A396IV19 | 63.9 | 97 | 34 | 1 | 85 | 181 | 16 | 111 | 3.0e-17 | 99.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056050 | MS.gene63497 | 0.80152 | 8.66E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 97 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACATCAACACCAATATTT+TGG | 0.162957 | 3.1:+56527002 | None:intergenic |
CACCACCACCTTCGTTATTT+TGG | 0.175913 | 3.1:+56527038 | None:intergenic |
CACCACCGCCTTCATTATTT+TGG | 0.243006 | 3.1:+56527074 | None:intergenic |
GGACCAGTGGGAACTATTTC+TGG | 0.246391 | 3.1:-56526845 | MS.gene63497:CDS |
GAGAGTTAGATGATGTAAAT+TGG | 0.252954 | 3.1:-56527138 | MS.gene63497:CDS |
GAAGAGCAGACTCGGTTAAT+TGG | 0.279142 | 3.1:+56528494 | None:intergenic |
GAGGGATTGGACGTTGTTAA+AGG | 0.280535 | 3.1:-56527175 | MS.gene63497:CDS |
TTGTCGTTCTAGGACGAATA+TGG | 0.288555 | 3.1:-56528635 | MS.gene63497:intron |
ACAAATTCTAGAACAAGTTT+TGG | 0.291936 | 3.1:-56527392 | MS.gene63497:CDS |
TTGATTGTACTTGTAAATTC+TGG | 0.292884 | 3.1:-56529951 | MS.gene63497:CDS |
GGGTCACTTGGGGCATGGTC+AGG | 0.357305 | 3.1:-56527326 | MS.gene63497:CDS |
AAAACTTGTTCTAGAATTTG+TGG | 0.370548 | 3.1:+56527394 | None:intergenic |
GAAGTTAATAACCAAAATAT+TGG | 0.373920 | 3.1:-56527013 | MS.gene63497:CDS |
TCATTATTAACCAACACAAC+AGG | 0.377212 | 3.1:+56527232 | None:intergenic |
CTGATCCTCCTATATATTCC+TGG | 0.381870 | 3.1:+56528547 | None:intergenic |
CCGAAACGATCAATATAGTC+TGG | 0.399362 | 3.1:+56528517 | None:intergenic |
TCTGTTAAGTGTGAAAGAAC+TGG | 0.402115 | 3.1:+56528970 | None:intergenic |
CTTGGAAGATGACGTAGCTT+TGG | 0.408955 | 3.1:-56528599 | MS.gene63497:CDS |
GGGCCACTTTGGAAATGAAC+AGG | 0.413907 | 3.1:-56527299 | MS.gene63497:CDS |
TAAATTCTGGCAACGATGTT+TGG | 0.416253 | 3.1:-56529938 | MS.gene63497:CDS |
TATATATTCCTGGCAACTGC+TGG | 0.438744 | 3.1:+56528557 | None:intergenic |
CTTGGGGCATGGTCAGGGAG+AGG | 0.441366 | 3.1:-56527320 | MS.gene63497:CDS |
CCAGACTATATTGATCGTTT+CGG | 0.446988 | 3.1:-56528517 | MS.gene63497:CDS |
AATTGGATTTGTCTCAAGTT+CGG | 0.448146 | 3.1:-56529996 | MS.gene63497:CDS |
GATTCACTTTGAAGAGGGAT+TGG | 0.448558 | 3.1:-56527188 | MS.gene63497:CDS |
AATGAAAACAATGCTATTGC+TGG | 0.449696 | 3.1:-56526938 | MS.gene63497:CDS |
AGAGTTAGATGATGTAAATT+GGG | 0.455164 | 3.1:-56527137 | MS.gene63497:CDS |
TACTCCAAGCTTTCTCTAGC+AGG | 0.455826 | 3.1:-56527424 | MS.gene63497:CDS |
GGACGAATATGGCTCATGAT+TGG | 0.456980 | 3.1:-56528624 | MS.gene63497:CDS |
TCATCTAACTCTCCTGCATC+AGG | 0.458002 | 3.1:+56527148 | None:intergenic |
GGGGCAGCAAGAGGGTCACT+TGG | 0.463334 | 3.1:-56527338 | MS.gene63497:CDS |
TTGTCTCAAGTTCGGACTGA+TGG | 0.463838 | 3.1:-56529988 | MS.gene63497:CDS |
AGGGATTGGACGTTGTTAAA+GGG | 0.464664 | 3.1:-56527174 | MS.gene63497:CDS |
GGTCAGGGAGAGGGCCACTT+TGG | 0.466677 | 3.1:-56527310 | MS.gene63497:CDS |
AACAATGACGGTATTGTTGT+GGG | 0.467525 | 3.1:-56526962 | MS.gene63497:CDS |
GTTGATGTGGAAGCTGTAGA+TGG | 0.472558 | 3.1:-56526989 | MS.gene63497:CDS |
GGGCAGCAAGAGGGTCACTT+GGG | 0.473436 | 3.1:-56527337 | MS.gene63497:CDS |
GAAGGGGAGGATGTTGATGA+AGG | 0.480853 | 3.1:-56527211 | MS.gene63497:CDS |
GTTAAAGGGCTGCCTGATGC+AGG | 0.481736 | 3.1:-56527160 | MS.gene63497:CDS |
AAACGGAGAGGGGCAGCAAG+AGG | 0.485710 | 3.1:-56527347 | MS.gene63497:CDS |
GGAAATGAACAGGGAGATCA+AGG | 0.490724 | 3.1:-56527289 | MS.gene63497:CDS |
GGTCACTTGGGGCATGGTCA+GGG | 0.499474 | 3.1:-56527325 | MS.gene63497:CDS |
TTGGGAGAGGGAAACGGAGA+GGG | 0.501349 | 3.1:-56527358 | MS.gene63497:CDS |
GCTCGATTCCAGCAGTTGCC+AGG | 0.502230 | 3.1:-56528565 | MS.gene63497:CDS |
GTTGTGTTGGTTAATAATGA+AGG | 0.506995 | 3.1:-56527229 | MS.gene63497:CDS |
GAATCCTCATCAGCTGCTCC+AGG | 0.511865 | 3.1:+56526821 | None:intergenic |
AGCAGTTGCCAGGAATATAT+AGG | 0.512850 | 3.1:-56528555 | MS.gene63497:CDS |
AATGCTATTGCTGGTGAAGA+TGG | 0.514018 | 3.1:-56526929 | MS.gene63497:CDS |
TTGGGGCATGGTCAGGGAGA+GGG | 0.521108 | 3.1:-56527319 | MS.gene63497:CDS |
GAAGGGATTCACTTTGAAGA+GGG | 0.524414 | 3.1:-56527193 | MS.gene63497:CDS |
TACTGTTGCTGAAGCTGCTG+TGG | 0.532759 | 3.1:-56526867 | MS.gene63497:CDS |
GAACACTTGGGAGAGGGAAA+CGG | 0.535238 | 3.1:-56527364 | MS.gene63497:CDS |
AACGGAGAGGGGCAGCAAGA+GGG | 0.536397 | 3.1:-56527346 | MS.gene63497:CDS |
TAACAATGACGGTATTGTTG+TGG | 0.537779 | 3.1:-56526963 | MS.gene63497:CDS |
TGCAGAGGACCCTGTTGTGT+TGG | 0.540063 | 3.1:-56527242 | MS.gene63497:CDS |
CTCCCTGTTCATTTCCAAAG+TGG | 0.541165 | 3.1:+56527296 | None:intergenic |
CCAAAATATTGGTGTTGATG+TGG | 0.542905 | 3.1:-56527002 | MS.gene63497:CDS |
GCGTCCTGCTAGAGAAAGCT+TGG | 0.546700 | 3.1:+56527420 | None:intergenic |
GAAGCTGCTGTGGGACCAGT+GGG | 0.550999 | 3.1:-56526857 | MS.gene63497:CDS |
TGGACCTGGAGCAGCTGATG+AGG | 0.553677 | 3.1:-56526825 | MS.gene63497:CDS |
CAAGAGGGTCACTTGGGGCA+TGG | 0.567164 | 3.1:-56527331 | MS.gene63497:CDS |
GAACAAGAACACTTGGGAGA+GGG | 0.569355 | 3.1:-56527370 | MS.gene63497:CDS |
CAAAGCTACGTCATCTTCCA+AGG | 0.571154 | 3.1:+56528600 | None:intergenic |
AAGGGGAGGATGTTGATGAA+GGG | 0.578659 | 3.1:-56527210 | MS.gene63497:CDS |
GGAACAAGAACACTTGGGAG+AGG | 0.583256 | 3.1:-56527371 | MS.gene63497:CDS |
CTGTTAAGTGTGAAAGAACT+GGG | 0.587160 | 3.1:+56528971 | None:intergenic |
CGAAACGATCAATATAGTCT+GGG | 0.587927 | 3.1:+56528518 | None:intergenic |
TGAAGGGATTCACTTTGAAG+AGG | 0.588690 | 3.1:-56527194 | MS.gene63497:CDS |
TATGGCTCATGATTGGACCT+TGG | 0.596845 | 3.1:-56528617 | MS.gene63497:CDS |
TGAAGCTGCTGTGGGACCAG+TGG | 0.597581 | 3.1:-56526858 | MS.gene63497:CDS |
CATTATTAACCAACACAACA+GGG | 0.603486 | 3.1:+56527233 | None:intergenic |
ACTTACTCGAAGAGCAGACT+CGG | 0.604902 | 3.1:+56528486 | None:intergenic |
GGTGAAGATGGTTCTGTGGA+AGG | 0.608523 | 3.1:-56526917 | MS.gene63497:CDS |
GCTGTTGACCAAAATAATGA+AGG | 0.608693 | 3.1:-56527082 | MS.gene63497:CDS |
GGCAGCAAGAGGGTCACTTG+GGG | 0.608966 | 3.1:-56527336 | MS.gene63497:CDS |
GTGGGAACTATTTCTGGACC+TGG | 0.612027 | 3.1:-56526839 | MS.gene63497:CDS |
GTAGATGGAAATAACAATGA+CGG | 0.623220 | 3.1:-56526974 | MS.gene63497:CDS |
GGTCCAGAAATAGTTCCCAC+TGG | 0.624087 | 3.1:+56526842 | None:intergenic |
AAATAACGAAGGTGGTGGTG+TGG | 0.626268 | 3.1:-56527035 | MS.gene63497:CDS |
TGCTGGTGAAGATGGTTCTG+TGG | 0.627076 | 3.1:-56526921 | MS.gene63497:CDS |
TTGTGTTGGTTAATAATGAA+GGG | 0.630403 | 3.1:-56527228 | MS.gene63497:CDS |
AACCAAAATAACGAAGGTGG+TGG | 0.633748 | 3.1:-56527040 | MS.gene63497:CDS |
TGGGAGAGGGAAACGGAGAG+GGG | 0.634801 | 3.1:-56527357 | MS.gene63497:CDS |
GTTGGTTAATAATGAAGGGG+AGG | 0.638090 | 3.1:-56527224 | MS.gene63497:CDS |
ACTGTTGCTGAAGCTGCTGT+GGG | 0.640278 | 3.1:-56526866 | MS.gene63497:CDS |
TGTGTTGGTTAATAATGAAG+GGG | 0.645209 | 3.1:-56527227 | MS.gene63497:CDS |
AGTTGCCAGGAATATATAGG+AGG | 0.647902 | 3.1:-56528552 | MS.gene63497:CDS |
GACCAAAATAATGAAGGCGG+TGG | 0.651627 | 3.1:-56527076 | MS.gene63497:CDS |
ACAATGACGGTATTGTTGTG+GGG | 0.655815 | 3.1:-56526961 | MS.gene63497:CDS |
GACAACCAAAATAACGAAGG+TGG | 0.664413 | 3.1:-56527043 | MS.gene63497:CDS |
CTTGGGAGAGGGAAACGGAG+AGG | 0.667757 | 3.1:-56527359 | MS.gene63497:CDS |
TGTGGAAGGTAACAATCCTG+TGG | 0.675483 | 3.1:-56526903 | MS.gene63497:CDS |
GGCCACTTTGGAAATGAACA+GGG | 0.690549 | 3.1:-56527298 | MS.gene63497:CDS |
GCTGACAACCAAAATAACGA+AGG | 0.722378 | 3.1:-56527046 | MS.gene63497:CDS |
AATGAACAGGGAGATCAAGG+AGG | 0.734386 | 3.1:-56527286 | MS.gene63497:CDS |
GTTGACCAAAATAATGAAGG+CGG | 0.750267 | 3.1:-56527079 | MS.gene63497:CDS |
TTGGGTCGATGTGTACAATG+TGG | 0.813858 | 3.1:-56527119 | MS.gene63497:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAATATAATGTATCTTA+TGG | - | chr3.1:56529589-56529608 | MS.gene63497:intron | 10.0% |
!! | ATGTATAAAATCTAAAAATA+AGG | + | chr3.1:56528788-56528807 | None:intergenic | 10.0% |
!! | TGTATAAAATCTAAAAATAA+GGG | + | chr3.1:56528787-56528806 | None:intergenic | 10.0% |
!! | AAAGAAAATTATTCTATGAA+AGG | + | chr3.1:56527909-56527928 | None:intergenic | 15.0% |
!! | TGAAATGTAAAATATAGAAT+AGG | + | chr3.1:56528926-56528945 | None:intergenic | 15.0% |
!! | TTCTGTATAATTATGTTAAT+TGG | - | chr3.1:56528106-56528125 | MS.gene63497:intron | 15.0% |
!!! | ACACTTAAATTTAACTTTTT+TGG | + | chr3.1:56527459-56527478 | None:intergenic | 15.0% |
!!! | TTTTGAATGTATATGTTAAT+GGG | - | chr3.1:56528468-56528487 | MS.gene63497:intron | 15.0% |
!!! | TTTTTGAATGTATATGTTAA+TGG | - | chr3.1:56528467-56528486 | MS.gene63497:intron | 15.0% |
!!! | TTTTTTTTTTATCAATCCTT+TGG | - | chr3.1:56528983-56529002 | MS.gene63497:CDS | 15.0% |
!! | AAATTATTCTATGAAAGGAA+AGG | + | chr3.1:56527904-56527923 | None:intergenic | 20.0% |
!! | AATTGAAAGTTAAAAACAAC+AGG | - | chr3.1:56529639-56529658 | MS.gene63497:intron | 20.0% |
!! | AGAAACATGAAGTAAAAAAT+TGG | - | chr3.1:56529068-56529087 | MS.gene63497:intron | 20.0% |
!! | CTGTATTTAAATTTGTGTTA+TGG | - | chr3.1:56526848-56526867 | MS.gene63497:CDS | 20.0% |
!! | GAAGTTAATAACCAAAATAT+TGG | - | chr3.1:56530192-56530211 | MS.gene63497:intron | 20.0% |
!! | TCTAACATTATAATCATCAT+AGG | + | chr3.1:56529452-56529471 | None:intergenic | 20.0% |
!! | TGTAAAATATAGAATAGGAT+AGG | + | chr3.1:56528921-56528940 | None:intergenic | 20.0% |
!! | TTCAAAATGTCTAATTCTAA+GGG | + | chr3.1:56529259-56529278 | None:intergenic | 20.0% |
!! | TTTCTAATTGTCCAATAATT+TGG | - | chr3.1:56526922-56526941 | MS.gene63497:CDS | 20.0% |
!!! | AAATCTAAAAATAAGGGTAT+AGG | + | chr3.1:56528781-56528800 | None:intergenic | 20.0% |
!!! | AATCTAAAAATAAGGGTATA+GGG | + | chr3.1:56528780-56528799 | None:intergenic | 20.0% |
!!! | AGATAACTTTGTTTTTAGTT+TGG | - | chr3.1:56529686-56529705 | MS.gene63497:intron | 20.0% |
!!! | ATATGAAATTTGAAACTTGA+AGG | + | chr3.1:56527312-56527331 | None:intergenic | 20.0% |
!!! | ATTTCAATAATGTTTGTTAC+TGG | - | chr3.1:56526960-56526979 | MS.gene63497:CDS | 20.0% |
!!! | ATTTCATTTTAACAATGTGA+AGG | + | chr3.1:56529475-56529494 | None:intergenic | 20.0% |
!!! | TATGAAATTTGAAACTTGAA+GGG | + | chr3.1:56527311-56527330 | None:intergenic | 20.0% |
!!! | TATGATTCTTTTGAAATGTT+AGG | - | chr3.1:56528198-56528217 | MS.gene63497:intron | 20.0% |
!!! | TTAATTTTATTTGTCGTTCT+AGG | - | chr3.1:56528560-56528579 | MS.gene63497:CDS | 20.0% |
! | AATATAGAATAGGATAGGAT+AGG | + | chr3.1:56528916-56528935 | None:intergenic | 25.0% |
! | ACATTATAATCATCATAGGT+TGG | + | chr3.1:56529448-56529467 | None:intergenic | 25.0% |
! | ACTTACTACTATTATTGTGA+TGG | + | chr3.1:56529152-56529171 | None:intergenic | 25.0% |
! | AGAGTTAGATGATGTAAATT+GGG | - | chr3.1:56530068-56530087 | MS.gene63497:intron | 25.0% |
! | AGGAAAATCATTAAGAACAA+CGG | + | chr3.1:56529292-56529311 | None:intergenic | 25.0% |
! | ATTTCTTCTCTTAAAGCAAA+AGG | - | chr3.1:56527050-56527069 | MS.gene63497:CDS | 25.0% |
! | CATGAGATAATCCAAATTAT+TGG | + | chr3.1:56526936-56526955 | None:intergenic | 25.0% |
! | GAAGTAAAAAATTGGATAAC+AGG | - | chr3.1:56529076-56529095 | MS.gene63497:intron | 25.0% |
! | GCTTGATTAACAAAATCTAT+TGG | + | chr3.1:56528395-56528414 | None:intergenic | 25.0% |
! | GTTCAAAATGTCTAATTCTA+AGG | + | chr3.1:56529260-56529279 | None:intergenic | 25.0% |
! | TCAAAATGTCTAATTCTAAG+GGG | + | chr3.1:56529258-56529277 | None:intergenic | 25.0% |
! | TGAGAAAAGAAAACTATTCT+AGG | + | chr3.1:56527797-56527816 | None:intergenic | 25.0% |
! | TGATAACTTGGATACATTTA+TGG | + | chr3.1:56529556-56529575 | None:intergenic | 25.0% |
! | TGATACATATAACTGTAGAA+TGG | - | chr3.1:56527120-56527139 | MS.gene63497:CDS | 25.0% |
! | TGTGTTAATCAAGATTCATT+AGG | - | chr3.1:56528340-56528359 | MS.gene63497:intron | 25.0% |
! | TGTGTTAATCAAGATTTAGT+AGG | - | chr3.1:56528161-56528180 | MS.gene63497:intron | 25.0% |
! | TTGATTGTACTTGTAAATTC+TGG | - | chr3.1:56527254-56527273 | MS.gene63497:CDS | 25.0% |
!! | AAAGAAAACTATTCTAGGAA+AGG | + | chr3.1:56527792-56527811 | None:intergenic | 25.0% |
!! | GTACAAAGTAATGATTTTTG+TGG | - | chr3.1:56528128-56528147 | MS.gene63497:intron | 25.0% |
!! | TAGAATAGTTTTCTTTTCTC+AGG | - | chr3.1:56527796-56527815 | MS.gene63497:intron | 25.0% |
!! | TCCCTTTGAGTTAAAATATA+GGG | - | chr3.1:56527517-56527536 | MS.gene63497:intron | 25.0% |
!! | TGGATAACAGGTTAAAATTT+TGG | - | chr3.1:56529088-56529107 | MS.gene63497:intron | 25.0% |
!! | TTCCCTTTGAGTTAAAATAT+AGG | - | chr3.1:56527516-56527535 | MS.gene63497:intron | 25.0% |
!! | TTGGCATTTTTCATAAACAA+AGG | + | chr3.1:56529046-56529065 | None:intergenic | 25.0% |
!!! | AAAACTTGTTCTAGAATTTG+TGG | + | chr3.1:56529814-56529833 | None:intergenic | 25.0% |
!!! | AAAAGAGTATTCAGTTAAGT+TGG | + | chr3.1:56527769-56527788 | None:intergenic | 25.0% |
!!! | ACAAATTCTAGAACAAGTTT+TGG | - | chr3.1:56529813-56529832 | MS.gene63497:intron | 25.0% |
!!! | ACCCTATATTTTAACTCAAA+GGG | + | chr3.1:56527521-56527540 | None:intergenic | 25.0% |
!!! | TACCCTATATTTTAACTCAA+AGG | + | chr3.1:56527522-56527541 | None:intergenic | 25.0% |
!!! | TATGTTAATGGGTTTATGAA+TGG | - | chr3.1:56528479-56528498 | MS.gene63497:intron | 25.0% |
!!! | TTGTGTTGGTTAATAATGAA+GGG | - | chr3.1:56529977-56529996 | MS.gene63497:CDS | 25.0% |
!!! | TTTTACTTCATGTTTCTGAT+TGG | + | chr3.1:56529065-56529084 | None:intergenic | 25.0% |
AAAGTAACCACAATTCCAAA+TGG | - | chr3.1:56527717-56527736 | MS.gene63497:intron | 30.0% | |
AAGTAACCACAATTCCAAAT+GGG | - | chr3.1:56527718-56527737 | MS.gene63497:intron | 30.0% | |
AATGAAAACAATGCTATTGC+TGG | - | chr3.1:56530267-56530286 | MS.gene63497:intron | 30.0% | |
AATTGGATTTGTCTCAAGTT+CGG | - | chr3.1:56527209-56527228 | MS.gene63497:CDS | 30.0% | |
ACTACTATTATTGTGATGGT+GGG | + | chr3.1:56529148-56529167 | None:intergenic | 30.0% | |
ATGAAATATGTGTGAGTTAG+TGG | - | chr3.1:56529488-56529507 | MS.gene63497:intron | 30.0% | |
ATTCTTTGCGTGTTCATTAT+TGG | - | chr3.1:56529350-56529369 | MS.gene63497:intron | 30.0% | |
CATTATTAACCAACACAACA+GGG | + | chr3.1:56529975-56529994 | None:intergenic | 30.0% | |
GAGAGTTAGATGATGTAAAT+TGG | - | chr3.1:56530067-56530086 | MS.gene63497:intron | 30.0% | |
GGAAAATCATTAAGAACAAC+GGG | + | chr3.1:56529291-56529310 | None:intergenic | 30.0% | |
GTAGATGGAAATAACAATGA+CGG | - | chr3.1:56530231-56530250 | MS.gene63497:intron | 30.0% | |
TACTACTATTATTGTGATGG+TGG | + | chr3.1:56529149-56529168 | None:intergenic | 30.0% | |
TCATTATTAACCAACACAAC+AGG | + | chr3.1:56529976-56529995 | None:intergenic | 30.0% | |
TTAAGAACAACGGGAAAAAT+TGG | + | chr3.1:56529282-56529301 | None:intergenic | 30.0% | |
! | GTGTTTTCAGATTCAATCAA+TGG | - | chr3.1:56528444-56528463 | MS.gene63497:intron | 30.0% |
! | TGCCTTTTATCCTTTACTTA+GGG | - | chr3.1:56527337-56527356 | MS.gene63497:CDS | 30.0% |
! | TTGCCTTTTATCCTTTACTT+AGG | - | chr3.1:56527336-56527355 | MS.gene63497:CDS | 30.0% |
!! | AAAGGAGTATTCAGTTAAGA+TGG | + | chr3.1:56527886-56527905 | None:intergenic | 30.0% |
!! | CAGATCTTATGTTGATAACT+TGG | + | chr3.1:56529568-56529587 | None:intergenic | 30.0% |
!! | GTTGTGTTGGTTAATAATGA+AGG | - | chr3.1:56529976-56529995 | MS.gene63497:CDS | 30.0% |
!! | TGTGTTGGTTAATAATGAAG+GGG | - | chr3.1:56529978-56529997 | MS.gene63497:CDS | 30.0% |
!!! | ATTCAGTTAAGTTGGTTTTC+TGG | + | chr3.1:56527761-56527780 | None:intergenic | 30.0% |
!!! | TGAACTTTGTTTTTCAGTCA+AGG | - | chr3.1:56529758-56529777 | MS.gene63497:intron | 30.0% |
AACAATGACGGTATTGTTGT+GGG | - | chr3.1:56530243-56530262 | MS.gene63497:intron | 35.0% | |
AACCTTCAGCCAAAAATACA+AGG | + | chr3.1:56528868-56528887 | None:intergenic | 35.0% | |
ACCTTCAGCCAAAAATACAA+GGG | + | chr3.1:56528867-56528886 | None:intergenic | 35.0% | |
ATGTATCTTATGGCTGTATG+TGG | - | chr3.1:56529599-56529618 | MS.gene63497:intron | 35.0% | |
CAGTTAAGATGGATGATCAA+TGG | + | chr3.1:56527875-56527894 | None:intergenic | 35.0% | |
CCAGACTATATTGATCGTTT+CGG | - | chr3.1:56528688-56528707 | MS.gene63497:intron | 35.0% | |
CGAAACGATCAATATAGTCT+GGG | + | chr3.1:56528690-56528709 | None:intergenic | 35.0% | |
CGCAAAGAATTTCATGTACA+CGG | + | chr3.1:56529340-56529359 | None:intergenic | 35.0% | |
CTGTTAAGTGTGAAAGAACT+GGG | + | chr3.1:56528237-56528256 | None:intergenic | 35.0% | |
CTTTCACACTTAACAGAGTA+TGG | - | chr3.1:56528241-56528260 | MS.gene63497:intron | 35.0% | |
GACCCTAAGTAAAGGATAAA+AGG | + | chr3.1:56527342-56527361 | None:intergenic | 35.0% | |
GCTGTTGACCAAAATAATGA+AGG | - | chr3.1:56530123-56530142 | MS.gene63497:intron | 35.0% | |
GGATATGTTTAAGTGCACAT+TGG | - | chr3.1:56529004-56529023 | MS.gene63497:intron | 35.0% | |
GTAACAACTGATGAAGAACT+GGG | + | chr3.1:56528011-56528030 | None:intergenic | 35.0% | |
GTGCACTTAAACATATCCAA+AGG | + | chr3.1:56529002-56529021 | None:intergenic | 35.0% | |
GTTGACCAAAATAATGAAGG+CGG | - | chr3.1:56530126-56530145 | MS.gene63497:intron | 35.0% | |
TAAACAAAGGCAAGTTAACG+TGG | + | chr3.1:56529033-56529052 | None:intergenic | 35.0% | |
TAAATTCTGGCAACGATGTT+TGG | - | chr3.1:56527267-56527286 | MS.gene63497:CDS | 35.0% | |
TAACAATGACGGTATTGTTG+TGG | - | chr3.1:56530242-56530261 | MS.gene63497:intron | 35.0% | |
TCTGTTAAGTGTGAAAGAAC+TGG | + | chr3.1:56528238-56528257 | None:intergenic | 35.0% | |
TGATATATGATCCTCCCATT+TGG | + | chr3.1:56527735-56527754 | None:intergenic | 35.0% | |
! | CCACATCAACACCAATATTT+TGG | + | chr3.1:56530206-56530225 | None:intergenic | 35.0% |
! | GTACGAAGTAGTGATTTTTG+TGG | - | chr3.1:56528307-56528326 | MS.gene63497:intron | 35.0% |
! | GTATTATTTTCACTAGCCAC+AGG | + | chr3.1:56530321-56530340 | None:intergenic | 35.0% |
! | TGTTTAGCCCCTTGTATTTT+TGG | - | chr3.1:56528856-56528875 | MS.gene63497:intron | 35.0% |
!! | CCAAAATATTGGTGTTGATG+TGG | - | chr3.1:56530203-56530222 | MS.gene63497:intron | 35.0% |
!! | GTAAGTCAATTTTAACGCTC+TGG | - | chr3.1:56528736-56528755 | MS.gene63497:intron | 35.0% |
!! | TAATGGGTTTATGAATGGCT+TGG | - | chr3.1:56528484-56528503 | MS.gene63497:intron | 35.0% |
!! | TATCTCTGCTTGTTATCTAC+TGG | - | chr3.1:56527371-56527390 | MS.gene63497:CDS | 35.0% |
!! | TTTGGAATACGATTTTGCAG+AGG | - | chr3.1:56529948-56529967 | MS.gene63497:CDS | 35.0% |
!!! | AGATCAAGGAGGTTTTGATT+TGG | - | chr3.1:56529930-56529949 | MS.gene63497:intron | 35.0% |
!!! | AGTTTTGGAACAAGAACACT+TGG | - | chr3.1:56529828-56529847 | MS.gene63497:intron | 35.0% |
!!! | GTTTTGGAACAAGAACACTT+GGG | - | chr3.1:56529829-56529848 | MS.gene63497:intron | 35.0% |
AACCAAAATAACGAAGGTGG+TGG | - | chr3.1:56530165-56530184 | MS.gene63497:intron | 40.0% | |
AATGCTATTGCTGGTGAAGA+TGG | - | chr3.1:56530276-56530295 | MS.gene63497:intron | 40.0% | |
ACAATGACGGTATTGTTGTG+GGG | - | chr3.1:56530244-56530263 | MS.gene63497:intron | 40.0% | |
ACCAAACAGACCCTAAGTAA+AGG | + | chr3.1:56527350-56527369 | None:intergenic | 40.0% | |
ACTCAAAACCTTCCAAGCTT+TGG | + | chr3.1:56529522-56529541 | None:intergenic | 40.0% | |
AGCAGTTGCCAGGAATATAT+AGG | - | chr3.1:56528650-56528669 | MS.gene63497:intron | 40.0% | |
AGGGATTGGACGTTGTTAAA+GGG | - | chr3.1:56530031-56530050 | MS.gene63497:intron | 40.0% | |
AGTTGCCAGGAATATATAGG+AGG | - | chr3.1:56528653-56528672 | MS.gene63497:intron | 40.0% | |
ATATGTGTGAGTTAGTGGTG+TGG | - | chr3.1:56529493-56529512 | MS.gene63497:intron | 40.0% | |
ATCAGTTGTTACCTCAGGTT+AGG | - | chr3.1:56528019-56528038 | MS.gene63497:intron | 40.0% | |
CCGAAACGATCAATATAGTC+TGG | + | chr3.1:56528691-56528710 | None:intergenic | 40.0% | |
CCTTCAGCCAAAAATACAAG+GGG | + | chr3.1:56528866-56528885 | None:intergenic | 40.0% | |
CTCTGTTGAGTGTGAAAGAA+CGG | + | chr3.1:56528060-56528079 | None:intergenic | 40.0% | |
CTGATCCTCCTATATATTCC+TGG | + | chr3.1:56528661-56528680 | None:intergenic | 40.0% | |
CTTTCACACTCAACAGAGTA+TGG | - | chr3.1:56528062-56528081 | MS.gene63497:intron | 40.0% | |
GACAACCAAAATAACGAAGG+TGG | - | chr3.1:56530162-56530181 | MS.gene63497:intron | 40.0% | |
GATCAATAAAGCCTAACCTG+AGG | + | chr3.1:56528033-56528052 | None:intergenic | 40.0% | |
GATGGATGATCAATGGATGT+TGG | + | chr3.1:56527868-56527887 | None:intergenic | 40.0% | |
GCTAAACAGAAATGTGCTTC+TGG | + | chr3.1:56528844-56528863 | None:intergenic | 40.0% | |
GCTGACAACCAAAATAACGA+AGG | - | chr3.1:56530159-56530178 | MS.gene63497:intron | 40.0% | |
GGTAACAACTGATGAAGAAC+TGG | + | chr3.1:56528012-56528031 | None:intergenic | 40.0% | |
GTTGGTTAATAATGAAGGGG+AGG | - | chr3.1:56529981-56530000 | MS.gene63497:CDS | 40.0% | |
TAACCACAATTCCAAATGGG+AGG | - | chr3.1:56527721-56527740 | MS.gene63497:intron | 40.0% | |
TATATATTCCTGGCAACTGC+TGG | + | chr3.1:56528651-56528670 | None:intergenic | 40.0% | |
TATGCATCTATCACAAGCAG+AGG | + | chr3.1:56529312-56529331 | None:intergenic | 40.0% | |
TCCTTTACTTAGGGTCTGTT+TGG | - | chr3.1:56527346-56527365 | MS.gene63497:CDS | 40.0% | |
TCTGTTGAGTGTGAAAGAAC+GGG | + | chr3.1:56528059-56528078 | None:intergenic | 40.0% | |
TCTTCATCAGTTGTTACCTC+AGG | - | chr3.1:56528014-56528033 | MS.gene63497:intron | 40.0% | |
TGAAGAACTGGGATGATCAA+TGG | + | chr3.1:56528000-56528019 | None:intergenic | 40.0% | |
TTATAGTCAAGTACCTGCTC+AGG | + | chr3.1:56527076-56527095 | None:intergenic | 40.0% | |
! | ATGTTGGATGATGATGAAGG+TGG | + | chr3.1:56527852-56527871 | None:intergenic | 40.0% |
! | GAAGGGATTCACTTTGAAGA+GGG | - | chr3.1:56530012-56530031 | MS.gene63497:intron | 40.0% |
! | GAAGTAGTAGCTTTTCAGCT+AGG | + | chr3.1:56529221-56529240 | None:intergenic | 40.0% |
! | GATTCACTTTGAAGAGGGAT+TGG | - | chr3.1:56530017-56530036 | MS.gene63497:intron | 40.0% |
! | TGAAGGGATTCACTTTGAAG+AGG | - | chr3.1:56530011-56530030 | MS.gene63497:CDS | 40.0% |
! | TGGATGTTGGATGATGATGA+AGG | + | chr3.1:56527855-56527874 | None:intergenic | 40.0% |
! | TGGATGTTGGATGATGATGA+TGG | + | chr3.1:56527855-56527874 | None:intergenic | 40.0% |
!! | ATGTTGGATGATGATGATGG+TGG | + | chr3.1:56527977-56527996 | None:intergenic | 40.0% |
!! | TTGTCGTTCTAGGACGAATA+TGG | - | chr3.1:56528570-56528589 | MS.gene63497:CDS | 40.0% |
!!! | TGCAGCTACTTTTGTGGAAT+TGG | - | chr3.1:56527192-56527211 | MS.gene63497:CDS | 40.0% |
AATGAACAGGGAGATCAAGG+AGG | - | chr3.1:56529919-56529938 | MS.gene63497:intron | 45.0% | |
ACTTACTCGAAGAGCAGACT+CGG | + | chr3.1:56528722-56528741 | None:intergenic | 45.0% | |
AGTGTGTCGCATTGTTTCGT+AGG | - | chr3.1:56527474-56527493 | MS.gene63497:intron | 45.0% | |
CAAAGCTACGTCATCTTCCA+AGG | + | chr3.1:56528608-56528627 | None:intergenic | 45.0% | |
CATGATACCCTTGCATGCAT+GGG | - | chr3.1:56527430-56527449 | MS.gene63497:CDS | 45.0% | |
CGCATTGTTTCGTAGGTTTG+TGG | - | chr3.1:56527481-56527500 | MS.gene63497:intron | 45.0% | |
CTCCCTGTTCATTTCCAAAG+TGG | + | chr3.1:56529912-56529931 | None:intergenic | 45.0% | |
CTGGGATGATCAATGGATGT+TGG | + | chr3.1:56527993-56528012 | None:intergenic | 45.0% | |
CTGTTGAGTGTGAAAGAACG+GGG | + | chr3.1:56528058-56528077 | None:intergenic | 45.0% | |
CTTGGAAGATGACGTAGCTT+TGG | - | chr3.1:56528606-56528625 | MS.gene63497:CDS | 45.0% | |
GAACAAGAACACTTGGGAGA+GGG | - | chr3.1:56529835-56529854 | MS.gene63497:intron | 45.0% | |
GACCAAAATAATGAAGGCGG+TGG | - | chr3.1:56530129-56530148 | MS.gene63497:intron | 45.0% | |
GAGGGATTGGACGTTGTTAA+AGG | - | chr3.1:56530030-56530049 | MS.gene63497:intron | 45.0% | |
GGAAATGAACAGGGAGATCA+AGG | - | chr3.1:56529916-56529935 | MS.gene63497:intron | 45.0% | |
GGACGAATATGGCTCATGAT+TGG | - | chr3.1:56528581-56528600 | MS.gene63497:CDS | 45.0% | |
GGCTTGACAGTGTTCATCTA+AGG | - | chr3.1:56529109-56529128 | MS.gene63497:intron | 45.0% | |
GGGTATAGGGAAAGAGTTTG+CGG | + | chr3.1:56528767-56528786 | None:intergenic | 45.0% | |
GGTATAGGGAAAGAGTTTGC+GGG | + | chr3.1:56528766-56528785 | None:intergenic | 45.0% | |
GTAGCTGCACATGCAATGAA+AGG | + | chr3.1:56527181-56527200 | None:intergenic | 45.0% | |
GTATAGGGAAAGAGTTTGCG+GGG | + | chr3.1:56528765-56528784 | None:intergenic | 45.0% | |
GTTGATGTGGAAGCTGTAGA+TGG | - | chr3.1:56530216-56530235 | MS.gene63497:intron | 45.0% | |
TACTCCAAGCTTTCTCTAGC+AGG | - | chr3.1:56529781-56529800 | MS.gene63497:intron | 45.0% | |
TATGGCTCATGATTGGACCT+TGG | - | chr3.1:56528588-56528607 | MS.gene63497:CDS | 45.0% | |
TCATCTAACTCTCCTGCATC+AGG | + | chr3.1:56530060-56530079 | None:intergenic | 45.0% | |
TGTGGAAGGTAACAATCCTG+TGG | - | chr3.1:56530302-56530321 | MS.gene63497:intron | 45.0% | |
TTAAAGCAAAAGGCCTGAGC+AGG | - | chr3.1:56527060-56527079 | MS.gene63497:CDS | 45.0% | |
TTGGGTCGATGTGTACAATG+TGG | - | chr3.1:56530086-56530105 | MS.gene63497:intron | 45.0% | |
TTGTCTCAAGTTCGGACTGA+TGG | - | chr3.1:56527217-56527236 | MS.gene63497:CDS | 45.0% | |
! | AAATAACGAAGGTGGTGGTG+TGG | - | chr3.1:56530170-56530189 | MS.gene63497:intron | 45.0% |
! | AAGGGGAGGATGTTGATGAA+GGG | - | chr3.1:56529995-56530014 | MS.gene63497:CDS | 45.0% |
! | CACCACCACCTTCGTTATTT+TGG | + | chr3.1:56530170-56530189 | None:intergenic | 45.0% |
! | CACCACCGCCTTCATTATTT+TGG | + | chr3.1:56530134-56530153 | None:intergenic | 45.0% |
! | GAAGAGCAGACTCGGTTAAT+TGG | + | chr3.1:56528714-56528733 | None:intergenic | 45.0% |
! | GATCCTCCCATTTGGAATTG+TGG | + | chr3.1:56527727-56527746 | None:intergenic | 45.0% |
! | GGCCACTTTGGAAATGAACA+GGG | - | chr3.1:56529907-56529926 | MS.gene63497:intron | 45.0% |
! | TGAATGGCTTGGCTGAATCA+AGG | - | chr3.1:56528495-56528514 | MS.gene63497:CDS | 45.0% |
!!! | CCCCTTGTATTTTTGGCTGA+AGG | - | chr3.1:56528863-56528882 | MS.gene63497:intron | 45.0% |
!!! | TGCATGTGCAGCTACTTTTG+TGG | - | chr3.1:56527186-56527205 | MS.gene63497:CDS | 45.0% |
ACTGTTGCTGAAGCTGCTGT+GGG | - | chr3.1:56530339-56530358 | MS.gene63497:intron | 50.0% | |
GAACACTTGGGAGAGGGAAA+CGG | - | chr3.1:56529841-56529860 | MS.gene63497:intron | 50.0% | |
GCATGATACCCTTGCATGCA+TGG | - | chr3.1:56527429-56527448 | MS.gene63497:CDS | 50.0% | |
GGAACAAGAACACTTGGGAG+AGG | - | chr3.1:56529834-56529853 | MS.gene63497:intron | 50.0% | |
GGACCAGTGGGAACTATTTC+TGG | - | chr3.1:56530360-56530379 | MS.gene63497:intron | 50.0% | |
GGTCCAGAAATAGTTCCCAC+TGG | + | chr3.1:56530366-56530385 | None:intergenic | 50.0% | |
TACTGTTGCTGAAGCTGCTG+TGG | - | chr3.1:56530338-56530357 | MS.gene63497:intron | 50.0% | |
TGTGGTAGCCAAAGCTTGGA+AGG | - | chr3.1:56529511-56529530 | MS.gene63497:intron | 50.0% | |
! | GAAGGGGAGGATGTTGATGA+AGG | - | chr3.1:56529994-56530013 | MS.gene63497:CDS | 50.0% |
! | GGGCCACTTTGGAAATGAAC+AGG | - | chr3.1:56529906-56529925 | MS.gene63497:intron | 50.0% |
! | GGTGAAGATGGTTCTGTGGA+AGG | - | chr3.1:56530288-56530307 | MS.gene63497:intron | 50.0% |
! | TGCTGGTGAAGATGGTTCTG+TGG | - | chr3.1:56530284-56530303 | MS.gene63497:intron | 50.0% |
! | TTGGTGACCCATGCATGCAA+GGG | + | chr3.1:56527440-56527459 | None:intergenic | 50.0% |
! | TTTGGTGACCCATGCATGCA+AGG | + | chr3.1:56527441-56527460 | None:intergenic | 50.0% |
!! | GTGGGAACTATTTCTGGACC+TGG | - | chr3.1:56530366-56530385 | MS.gene63497:intron | 50.0% |
GAATCCTCATCAGCTGCTCC+AGG | + | chr3.1:56530387-56530406 | None:intergenic | 55.0% | |
GCGTCCTGCTAGAGAAAGCT+TGG | + | chr3.1:56529788-56529807 | None:intergenic | 55.0% | |
GTGGTGTGGTAGCCAAAGCT+TGG | - | chr3.1:56529507-56529526 | MS.gene63497:intron | 55.0% | |
GTTAAAGGGCTGCCTGATGC+AGG | - | chr3.1:56530045-56530064 | MS.gene63497:intron | 55.0% | |
TGCAGAGGACCCTGTTGTGT+TGG | - | chr3.1:56529963-56529982 | MS.gene63497:CDS | 55.0% | |
TTGGGAGAGGGAAACGGAGA+GGG | - | chr3.1:56529847-56529866 | MS.gene63497:intron | 55.0% | |
AAACGGAGAGGGGCAGCAAG+AGG | - | chr3.1:56529858-56529877 | MS.gene63497:intron | 60.0% | |
AACGGAGAGGGGCAGCAAGA+GGG | - | chr3.1:56529859-56529878 | MS.gene63497:intron | 60.0% | |
CAAGAGGGTCACTTGGGGCA+TGG | - | chr3.1:56529874-56529893 | MS.gene63497:intron | 60.0% | |
CTTGGGAGAGGGAAACGGAG+AGG | - | chr3.1:56529846-56529865 | MS.gene63497:intron | 60.0% | |
GAAGCTGCTGTGGGACCAGT+GGG | - | chr3.1:56530348-56530367 | MS.gene63497:intron | 60.0% | |
GCTCGATTCCAGCAGTTGCC+AGG | - | chr3.1:56528640-56528659 | MS.gene63497:intron | 60.0% | |
GGCAGCAAGAGGGTCACTTG+GGG | - | chr3.1:56529869-56529888 | MS.gene63497:intron | 60.0% | |
GGGCAGCAAGAGGGTCACTT+GGG | - | chr3.1:56529868-56529887 | MS.gene63497:intron | 60.0% | |
GGTCACTTGGGGCATGGTCA+GGG | - | chr3.1:56529880-56529899 | MS.gene63497:intron | 60.0% | |
TGAAGCTGCTGTGGGACCAG+TGG | - | chr3.1:56530347-56530366 | MS.gene63497:intron | 60.0% | |
TGGACCTGGAGCAGCTGATG+AGG | - | chr3.1:56530380-56530399 | MS.gene63497:intron | 60.0% | |
TGGGAGAGGGAAACGGAGAG+GGG | - | chr3.1:56529848-56529867 | MS.gene63497:intron | 60.0% | |
TTGGGGCATGGTCAGGGAGA+GGG | - | chr3.1:56529886-56529905 | MS.gene63497:intron | 60.0% | |
CTTGGGGCATGGTCAGGGAG+AGG | - | chr3.1:56529885-56529904 | MS.gene63497:intron | 65.0% | |
GGGGCAGCAAGAGGGTCACT+TGG | - | chr3.1:56529867-56529886 | MS.gene63497:intron | 65.0% | |
GGGTCACTTGGGGCATGGTC+AGG | - | chr3.1:56529879-56529898 | MS.gene63497:intron | 65.0% | |
GGTCAGGGAGAGGGCCACTT+TGG | - | chr3.1:56529895-56529914 | MS.gene63497:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 56526814 | 56530413 | 56526814 | ID=MS.gene63497 |
chr3.1 | mRNA | 56526814 | 56530413 | 56526814 | ID=MS.gene63497.t1;Parent=MS.gene63497 |
chr3.1 | exon | 56530410 | 56530413 | 56530410 | ID=MS.gene63497.t1.exon1;Parent=MS.gene63497.t1 |
chr3.1 | CDS | 56530410 | 56530413 | 56530410 | ID=cds.MS.gene63497.t1;Parent=MS.gene63497.t1 |
chr3.1 | exon | 56529933 | 56530030 | 56529933 | ID=MS.gene63497.t1.exon2;Parent=MS.gene63497.t1 |
chr3.1 | CDS | 56529933 | 56530030 | 56529933 | ID=cds.MS.gene63497.t1;Parent=MS.gene63497.t1 |
chr3.1 | exon | 56528970 | 56529007 | 56528970 | ID=MS.gene63497.t1.exon3;Parent=MS.gene63497.t1 |
chr3.1 | CDS | 56528970 | 56529007 | 56528970 | ID=cds.MS.gene63497.t1;Parent=MS.gene63497.t1 |
chr3.1 | exon | 56528492 | 56528645 | 56528492 | ID=MS.gene63497.t1.exon4;Parent=MS.gene63497.t1 |
chr3.1 | CDS | 56528492 | 56528645 | 56528492 | ID=cds.MS.gene63497.t1;Parent=MS.gene63497.t1 |
chr3.1 | exon | 56526814 | 56527452 | 56526814 | ID=MS.gene63497.t1.exon5;Parent=MS.gene63497.t1 |
chr3.1 | CDS | 56526814 | 56527452 | 56526814 | ID=cds.MS.gene63497.t1;Parent=MS.gene63497.t1 |
Gene Sequence |
Protein sequence |