AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63985

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63985.t1 MTR_1g023760 96.534 779 26 1 1 779 1 778 0.0 1528
MS.gene63985.t1 MTR_8g466020 73.485 132 25 1 49 180 19 140 2.42e-53 187
MS.gene63985.t1 MTR_7g007170 79.592 98 20 0 85 182 11 108 4.26e-46 164
MS.gene63985.t1 MTR_1g023925 44.706 170 20 3 558 725 1 98 7.57e-28 108
MS.gene63985.t1 MTR_5g038620 37.313 134 83 1 127 260 121 253 7.93e-17 85.5
MS.gene63985.t1 MTR_4g108140 35.714 140 84 2 125 260 99 236 4.60e-16 82.8
MS.gene63985.t1 MTR_4g108140 35.714 140 84 2 125 260 100 237 4.73e-16 82.8
MS.gene63985.t1 MTR_3g091560 36.047 172 66 6 125 262 112 273 5.43e-15 78.6
MS.gene63985.t1 MTR_4g050480 32.121 165 82 4 125 263 97 257 5.00e-14 75.5
MS.gene63985.t1 MTR_4g050480 32.121 165 82 4 125 263 96 256 5.25e-14 75.5
MS.gene63985.t1 MTR_8g024540 59.649 57 23 0 127 183 129 185 5.49e-14 75.9
MS.gene63985.t1 MTR_0019s0070 33.333 156 88 7 108 261 106 247 1.55e-12 70.9
MS.gene63985.t1 MTR_1g101330 28.631 241 143 8 31 261 25 246 1.74e-12 70.9
MS.gene63985.t1 MTR_8g014580 49.254 67 34 0 127 193 128 194 2.65e-12 70.1
MS.gene63985.t1 MTR_1g041430 56.604 53 23 0 125 177 111 163 5.23e-12 69.3
MS.gene63985.t1 MTR_7g114700 50.769 65 32 0 125 189 135 199 7.01e-12 68.9
MS.gene63985.t1 MTR_1g095740 28.834 163 90 3 125 261 141 303 1.24e-11 68.2
MS.gene63985.t1 MTR_1g007920 56.364 55 24 0 122 176 94 148 2.49e-11 67.0
MS.gene63985.t1 MTR_0047s0040 43.210 81 44 1 118 198 94 172 2.77e-11 67.0
MS.gene63985.t1 MTR_1g007920 56.364 55 24 0 122 176 119 173 3.47e-11 67.0
MS.gene63985.t1 MTR_1g066800 28.302 159 92 2 125 261 116 274 5.83e-11 65.9
MS.gene63985.t1 MTR_1g066800 28.302 159 92 2 125 261 121 279 5.86e-11 66.2
MS.gene63985.t1 MTR_1g103070 44.444 72 39 1 125 196 136 206 6.73e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63985.t1 AT1G19870 37.006 708 282 29 111 774 18 605 1.25e-94 308
MS.gene63985.t1 AT1G19870 37.163 705 279 29 114 774 204 788 1.02e-92 308
MS.gene63985.t1 AT1G18840 36.628 172 91 6 96 260 85 245 9.39e-22 100
MS.gene63985.t1 AT1G18840 36.628 172 91 6 96 260 85 245 9.39e-22 100
MS.gene63985.t1 AT1G18840 36.628 172 91 6 96 260 85 245 9.39e-22 100
MS.gene63985.t1 AT1G74690 37.838 148 69 3 125 260 113 249 1.04e-20 97.4
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.16e-20 97.8
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.16e-20 97.8
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.16e-20 97.8
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.54e-20 97.1
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.54e-20 97.1
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.54e-20 97.1
MS.gene63985.t1 AT1G14380 37.589 141 77 3 125 260 94 228 1.76e-20 96.7
MS.gene63985.t1 AT5G03040 29.630 162 87 4 125 261 115 274 5.63e-15 78.6
MS.gene63985.t1 AT5G03040 29.630 162 87 4 125 261 115 274 5.63e-15 78.6
MS.gene63985.t1 AT5G03040 29.630 162 87 4 125 261 115 274 5.63e-15 78.6
MS.gene63985.t1 AT2G02790 28.788 198 137 2 63 260 48 241 6.97e-15 79.0
MS.gene63985.t1 AT2G02790 28.788 198 137 2 63 260 48 241 6.97e-15 79.0
MS.gene63985.t1 AT2G02790 28.788 198 137 2 63 260 48 241 7.16e-15 79.0
MS.gene63985.t1 AT3G49260 51.471 68 33 0 125 192 120 187 8.01e-15 78.2
MS.gene63985.t1 AT3G49260 51.471 68 33 0 125 192 120 187 8.01e-15 78.2
MS.gene63985.t1 AT3G49260 51.471 68 33 0 125 192 120 187 8.01e-15 78.2
MS.gene63985.t1 AT3G49260 51.471 68 33 0 125 192 120 187 8.33e-15 78.2
MS.gene63985.t1 AT3G52290 31.875 160 84 4 125 261 108 265 1.94e-14 77.0
MS.gene63985.t1 AT1G01110 55.072 69 30 1 127 195 123 190 3.17e-14 76.6
MS.gene63985.t1 AT4G14750 30.078 256 139 8 1 243 1 229 6.73e-14 74.7
MS.gene63985.t1 AT4G00820 53.623 69 31 1 127 195 134 201 1.11e-13 75.1
MS.gene63985.t1 AT4G14750 33.871 186 93 5 34 215 99 258 1.38e-13 74.3
MS.gene63985.t1 AT4G14750 33.871 186 93 5 34 215 99 258 1.61e-13 74.3
MS.gene63985.t1 AT3G51380 53.968 63 29 0 125 187 37 99 4.21e-13 66.6
MS.gene63985.t1 AT4G10640 33.333 171 82 5 20 190 27 165 4.43e-13 72.4
MS.gene63985.t1 AT3G22190 30.435 161 88 3 127 263 90 250 1.14e-12 71.2
MS.gene63985.t1 AT3G22190 30.435 161 88 3 127 263 90 250 1.14e-12 71.2
MS.gene63985.t1 AT3G22190 30.435 161 88 3 127 263 90 250 1.14e-12 71.2
MS.gene63985.t1 AT3G22190 30.435 161 88 3 127 263 90 250 1.14e-12 71.2
MS.gene63985.t1 AT1G72670 30.097 206 96 7 97 261 57 255 1.44e-12 70.9
MS.gene63985.t1 AT2G26180 57.692 52 22 0 125 176 84 135 3.15e-11 66.6
MS.gene63985.t1 AT5G13460 32.164 171 99 6 108 261 92 262 5.22e-11 66.2
MS.gene63985.t1 AT3G09710 30.409 171 92 7 125 270 108 276 5.31e-11 66.2

Find 166 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1.4:-1111045 MS.gene63985:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1.4:+1108748 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1.4:-1109806 MS.gene63985:intron
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1.4:+1108036 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1.4:+1108705 None:intergenic
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1.4:+1109880 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1.4:+1108402 None:intergenic
ATGGTTAGGGGTGTGTCGTC+TGG 0.247021 1.4:-1106991 MS.gene63985:intron
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1.4:+1108416 None:intergenic
TATCCCTTCTACTAAATCTT+TGG 0.290554 1.4:+1108320 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1.4:-1108754 MS.gene63985:CDS
CCCTTTGTGCCCTGCAGAGC+TGG 0.292599 1.4:+1107541 None:intergenic
GATCAATTAGAAACTGTTAA+TGG 0.296217 1.4:-1108222 MS.gene63985:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1.4:-1109263 MS.gene63985:intron
GACCACATCTTCAGTAAATA+AGG 0.301423 1.4:-1110028 MS.gene63985:CDS
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1.4:-1108547 MS.gene63985:CDS
ATTGCTACTACTATTATCTT+TGG 0.306041 1.4:+1107741 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1.4:-1107919 MS.gene63985:CDS
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1.4:+1107766 None:intergenic
GACTGTTCGGTCGTACATAT+TGG 0.353607 1.4:+1109023 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1.4:-1107865 MS.gene63985:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1.4:+1109104 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1.4:+1108158 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1.4:-1109814 MS.gene63985:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1.4:+1109832 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1.4:-1107551 MS.gene63985:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1.4:-1108546 MS.gene63985:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1.4:-1108244 MS.gene63985:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1.4:+1109961 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1.4:+1107708 None:intergenic
AGGGGTGTGTCGTCTGGGGT+TGG 0.384357 1.4:-1106985 MS.gene63985:CDS
TGCACATCTGGACTTGATCT+TGG 0.387615 1.4:+1107652 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1.4:-1107799 MS.gene63985:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1.4:-1108324 MS.gene63985:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1.4:-1109072 MS.gene63985:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1.4:-1108022 MS.gene63985:CDS
AGAGGAATTTGCATTTATCT+TGG 0.400449 1.4:+1107675 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1.4:+1107640 None:intergenic
TGGTTAGGGGTGTGTCGTCT+GGG 0.404140 1.4:-1106990 MS.gene63985:intron
GAGGGAAAGAAAATTACATT+TGG 0.405918 1.4:-1108624 MS.gene63985:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1.4:-1107593 MS.gene63985:CDS
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1.4:+1107760 None:intergenic
GGGGTGTGTCGTCTGGGGTT+GGG 0.414894 1.4:-1106984 MS.gene63985:CDS
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1.4:+1107817 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1.4:-1108838 MS.gene63985:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1.4:+1108992 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1.4:-1109637 MS.gene63985:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.423888 1.4:+1109010 None:intergenic
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1.4:-1107601 MS.gene63985:CDS
TTCACCGAAACCTGACTTGA+AGG 0.429554 1.4:+1108018 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1.4:-1108028 MS.gene63985:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1.4:+1108057 None:intergenic
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1.4:+1108168 None:intergenic
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1.4:+1108637 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1.4:-1108358 MS.gene63985:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1.4:+1109864 None:intergenic
ACAAAGGGCAATGGTTCATC+TGG 0.448716 1.4:-1107526 MS.gene63985:intron
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1.4:+1107681 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1.4:-1108617 MS.gene63985:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1.4:-1109103 MS.gene63985:CDS
CCAGCTCTGCAGGGCACAAA+GGG 0.458401 1.4:-1107541 MS.gene63985:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1.4:-1109097 MS.gene63985:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1.4:-1107988 MS.gene63985:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1.4:+1108926 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1.4:+1107922 None:intergenic
TAAATTAGAAGTCGGAGTAT+TGG 0.472015 1.4:+1108260 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1.4:+1108237 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1.4:-1109645 MS.gene63985:CDS
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1.4:-1108076 MS.gene63985:CDS
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1.4:+1108357 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1.4:-1108291 MS.gene63985:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1.4:+1107876 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1.4:-1109116 MS.gene63985:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1.4:-1109827 MS.gene63985:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1.4:+1107707 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1.4:-1111025 MS.gene63985:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1.4:+1107597 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1.4:+1107759 None:intergenic
ATCACATGCGGTGGTGGTGG+TGG 0.498037 1.4:-1111019 MS.gene63985:CDS
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1.4:-1107820 MS.gene63985:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1.4:-1109085 MS.gene63985:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1.4:+1107745 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1.4:+1109564 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1.4:+1108908 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1.4:+1108951 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1.4:-1109869 MS.gene63985:CDS
GAGGATTGAAAACTAATACT+TGG 0.509672 1.4:+1109991 None:intergenic
TCATCACTTTCTTGATTCTG+AGG 0.511188 1.4:+1108696 None:intergenic
TAGCACTCATGCATCTCAAT+CGG 0.515881 1.4:-1108985 MS.gene63985:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1.4:-1108520 MS.gene63985:CDS
AATATCCTCTAATTGAAGCC+TGG 0.517071 1.4:+1109809 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1.4:+1108918 None:intergenic
ATCAGCATTTCTGGAAGGAT+AGG 0.521792 1.4:+1108425 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1.4:+1107868 None:intergenic
TTAATCACATGCGGTGGTGG+TGG 0.525156 1.4:-1111022 MS.gene63985:CDS
AATAAATGATAACTTGGAAG+AGG 0.528936 1.4:-1108832 MS.gene63985:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1.4:-1110110 MS.gene63985:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1.4:+1109125 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1.4:-1108414 MS.gene63985:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1.4:+1108252 None:intergenic
CTCCTTATTTACTGAAGATG+TGG 0.542415 1.4:+1110026 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1.4:-1109626 MS.gene63985:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1.4:-1107955 MS.gene63985:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1.4:+1108581 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1.4:-1109093 MS.gene63985:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1.4:+1108767 None:intergenic
GTGACTCAACCGATACATCC+TGG 0.551810 1.4:+1108502 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1.4:+1108770 None:intergenic
ACAAACCGAGACTGTTCTGC+AGG 0.554305 1.4:-1108106 MS.gene63985:CDS
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1.4:+1108389 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1.4:-1108045 MS.gene63985:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1.4:+1108887 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1.4:+1108912 None:intergenic
TTTGCTCGACCAGGATGTAT+CGG 0.563779 1.4:-1108511 MS.gene63985:CDS
AGATCATCATGTTGTTTCTG+AGG 0.564237 1.4:-1110987 MS.gene63985:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1.4:-1109653 MS.gene63985:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569713 1.4:+1108426 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1.4:+1107592 None:intergenic
CTGCAGGGCACAAAGGGCAA+TGG 0.570514 1.4:-1107535 MS.gene63985:CDS
GATTGAGCAGCAATAAATGA+GGG 0.573179 1.4:+1108582 None:intergenic
TCCAGCTCTGCAGGGCACAA+AGG 0.574271 1.4:-1107542 MS.gene63985:CDS
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1.4:-1108735 MS.gene63985:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1.4:-1107610 MS.gene63985:CDS
GAAATCCTGCAGAACAGTCT+CGG 0.581117 1.4:+1108101 None:intergenic
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1.4:-1107833 MS.gene63985:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1.4:-1109296 MS.gene63985:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1.4:+1108420 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1.4:-1107592 MS.gene63985:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1.4:+1108644 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1.4:+1109120 None:intergenic
AATATGTACGACCGAACAGT+CGG 0.596543 1.4:-1109021 MS.gene63985:CDS
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1.4:-1109545 MS.gene63985:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1.4:-1107856 MS.gene63985:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1.4:-1108814 MS.gene63985:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1.4:+1107565 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1.4:-1107969 MS.gene63985:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1.4:-1111031 MS.gene63985:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1.4:+1109835 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1.4:-1108323 MS.gene63985:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1.4:-1109652 MS.gene63985:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1.4:+1108196 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1.4:+1108197 None:intergenic
GGTTAGGGGTGTGTCGTCTG+GGG 0.616588 1.4:-1106989 MS.gene63985:intron
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1.4:+1107657 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1.4:+1108850 None:intergenic
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1.4:+1109900 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1.4:-1107550 MS.gene63985:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1.4:-1108213 MS.gene63985:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1.4:-1108075 MS.gene63985:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1.4:-1108542 MS.gene63985:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1.4:-1107698 MS.gene63985:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1.4:-1108925 MS.gene63985:CDS
CTCAGACCAACTAGAGACCG+AGG 0.645334 1.4:-1108643 MS.gene63985:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1.4:+1108872 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1.4:-1107968 MS.gene63985:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1.4:-1108534 MS.gene63985:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1.4:+1108519 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1.4:-1109866 MS.gene63985:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1.4:-1111028 MS.gene63985:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1.4:+1109903 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1.4:-1107901 MS.gene63985:CDS
AACAACATTAGGCTCAGCTG+AGG 0.679085 1.4:+1109972 None:intergenic
TCAGACCAACTAGAGACCGA+GGG 0.692845 1.4:-1108642 MS.gene63985:CDS
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1.4:+1107709 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1.4:+1109913 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1.4:-1110114 MS.gene63985:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1.4:1107229-1107248 MS.gene63985:intron 10.0%
!! AAAGATCACAAAAAAAAAAA+AGG + chr1.4:1107350-1107369 None:intergenic 15.0%
!! TGTAGAACTTATATTATATT+AGG + chr1.4:1110974-1110993 None:intergenic 15.0%
!! TTCATAATTGAATAGTTATA+AGG - chr1.4:1107271-1107290 MS.gene63985:intron 15.0%
!!! ATATTCTTTGGTAATAAATA+AGG + chr1.4:1110825-1110844 None:intergenic 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1.4:1108570-1108589 None:intergenic 15.0%
!!! TCAATTTTTTGGTATATAAT+CGG + chr1.4:1110641-1110660 None:intergenic 15.0%
!!! TTATATAAGGATCAATTTTT+TGG + chr1.4:1110652-1110671 None:intergenic 15.0%
!! AAATGTTGGAATTGTTAATA+TGG - chr1.4:1111010-1111029 MS.gene63985:CDS 20.0%
!! AAGTATGTCATTATATTCTT+TGG + chr1.4:1110837-1110856 None:intergenic 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1.4:1108299-1108318 None:intergenic 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1.4:1108823-1108842 None:intergenic 20.0%
!! TAATATAAGTTCTACATACA+TGG - chr1.4:1110978-1110997 MS.gene63985:intron 20.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1.4:1108257-1108276 MS.gene63985:CDS 20.0%
!! TTCTCTAATAAATGATAACT+TGG - chr1.4:1109182-1109201 MS.gene63985:intron 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG - chr1.4:1109266-1109285 MS.gene63985:CDS 20.0%
!!! AATTTTTTGGTATATAATCG+GGG + chr1.4:1110639-1110658 None:intergenic 20.0%
!!! CAATTTTTTGGTATATAATC+GGG + chr1.4:1110640-1110659 None:intergenic 20.0%
!!! CATTATATAGACAGATTTTA+TGG - chr1.4:1110713-1110732 MS.gene63985:intron 20.0%
!!! TCTAAAACTAAGAAAATGTT+AGG + chr1.4:1110584-1110603 None:intergenic 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1.4:1108676-1108695 MS.gene63985:CDS 20.0%
!!! TTGATTCCATTATTTCATTT+TGG + chr1.4:1109275-1109294 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1.4:1108573-1108592 MS.gene63985:CDS 20.0%
! AAATGATGACTCAAAAACTA+CGG - chr1.4:1108501-1108520 MS.gene63985:CDS 25.0%
! AACTAAGAAAATGTTAGGTA+TGG + chr1.4:1110579-1110598 None:intergenic 25.0%
! AATAAATGATAACTTGGAAG+AGG - chr1.4:1109188-1109207 MS.gene63985:intron 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1.4:1107160-1107179 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG - chr1.4:1109403-1109422 MS.gene63985:intron 25.0%
! AGTTGAAGAAATAGATAGTA+CGG + chr1.4:1109634-1109653 None:intergenic 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1.4:1107585-1107604 MS.gene63985:CDS 25.0%
! ATTGCTACTACTATTATCTT+TGG + chr1.4:1110282-1110301 None:intergenic 25.0%
! GATCAATTAGAAACTGTTAA+TGG - chr1.4:1109798-1109817 MS.gene63985:intron 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1.4:1107619-1107638 MS.gene63985:CDS 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1.4:1107431-1107450 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG - chr1.4:1109776-1109795 MS.gene63985:intron 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1.4:1107584-1107603 MS.gene63985:CDS 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1.4:1107645-1107664 None:intergenic 25.0%
! TGGAATTGTTAATATGGTTA+GGG - chr1.4:1111016-1111035 MS.gene63985:CDS 25.0%
! TTGGAATTGTTAATATGGTT+AGG - chr1.4:1111015-1111034 MS.gene63985:CDS 25.0%
! TTGTGAAAAACATTAAACCT+CGG + chr1.4:1107085-1107104 None:intergenic 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG + chr1.4:1109397-1109416 None:intergenic 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1.4:1106975-1106994 MS.gene63985:CDS 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1.4:1108309-1108328 MS.gene63985:CDS 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1.4:1107881-1107900 MS.gene63985:CDS 25.0%
!!! AATGGCATTGCTTTTATATA+AGG + chr1.4:1110665-1110684 None:intergenic 25.0%
!!! ATTTTTTGGTATATAATCGG+GGG + chr1.4:1110638-1110657 None:intergenic 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1.4:1108670-1108689 MS.gene63985:CDS 25.0%
AACTGAAGAATAACTTGAGA+TGG + chr1.4:1109072-1109091 None:intergenic 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1.4:1107906-1107925 MS.gene63985:CDS 30.0%
AGAGGAATTTGCATTTATCT+TGG + chr1.4:1110348-1110367 None:intergenic 30.0%
ATGCCAAAGATTTAGTAGAA+GGG - chr1.4:1109697-1109716 MS.gene63985:intron 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1.4:1108062-1108081 None:intergenic 30.0%
CATGGTAAGAAAAGAAATGT+TGG - chr1.4:1110996-1111015 MS.gene63985:CDS 30.0%
CTACTACTATTATCTTTGGT+AGG + chr1.4:1110278-1110297 None:intergenic 30.0%
CTGAGTTCAAATTCAAATTC+GGG - chr1.4:1109474-1109493 MS.gene63985:intron 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1.4:1107296-1107315 MS.gene63985:intron 30.0%
GAGAATAAAATCAACAAGAC+TGG - chr1.4:1110032-1110051 MS.gene63985:CDS 30.0%
GAGATAGGTAAATTAGAAGT+CGG + chr1.4:1109771-1109790 None:intergenic 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1.4:1108032-1108051 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG - chr1.4:1109396-1109415 MS.gene63985:intron 30.0%
GCTAATTCAAATCAAGATTC+AGG - chr1.4:1110101-1110120 MS.gene63985:CDS 30.0%
GCTGAGTTCAAATTCAAATT+CGG - chr1.4:1109473-1109492 MS.gene63985:intron 30.0%
GGAATTGTTAATATGGTTAG+GGG - chr1.4:1111017-1111036 MS.gene63985:CDS 30.0%
GTTATGATAAATACCTTTCG+AGG - chr1.4:1110764-1110783 MS.gene63985:intron 30.0%
TAAATTAGAAGTCGGAGTAT+TGG + chr1.4:1109763-1109782 None:intergenic 30.0%
TATCCCTTCTACTAAATCTT+TGG + chr1.4:1109703-1109722 None:intergenic 30.0%
TATGATATGTGACATCACAT+TGG - chr1.4:1110611-1110630 MS.gene63985:intron 30.0%
TGGCAAAAATGTGACATTTA+AGG - chr1.4:1110733-1110752 MS.gene63985:intron 30.0%
TTATTAGAGAAGATGAAGAG+AGG + chr1.4:1109173-1109192 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG + chr1.4:1109256-1109275 None:intergenic 30.0%
! ATATAAAGTTGATCCTCGAA+AGG + chr1.4:1110780-1110799 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG + chr1.4:1109220-1109239 None:intergenic 30.0%
! CTAAAGATTACTTGCTACTT+TGG - chr1.4:1110539-1110558 MS.gene63985:intron 30.0%
! GAATCTTGATTTGAATTAGC+AGG + chr1.4:1110101-1110120 None:intergenic 30.0%
! GTAGCAAGTAATCTTTAGAA+AGG + chr1.4:1110537-1110556 None:intergenic 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1.4:1106989-1107008 MS.gene63985:intron 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1.4:1108232-1108251 MS.gene63985:CDS 30.0%
!! AATAGTTATAAGGTGCTGTT+TGG - chr1.4:1107281-1107300 MS.gene63985:intron 30.0%
!! GTCATTTTCAGCTTAGTTTA+GGG - chr1.4:1110935-1110954 MS.gene63985:intron 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1.4:1107818-1107837 MS.gene63985:CDS 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG + chr1.4:1108886-1108905 None:intergenic 30.0%
!!! TGTCATTTTCAGCTTAGTTT+AGG - chr1.4:1110934-1110953 MS.gene63985:intron 30.0%
AATATCCTCTAATTGAAGCC+TGG + chr1.4:1108214-1108233 None:intergenic 35.0%
AATTGATCCGAATCAGAGAT+AGG + chr1.4:1109786-1109805 None:intergenic 35.0%
AGTCCTTGACGAAAGAAAAA+TGG + chr1.4:1110683-1110702 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG - chr1.4:1109975-1109994 MS.gene63985:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1.4:1108191-1108210 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG - chr1.4:1109285-1109304 MS.gene63985:CDS 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1.4:1107910-1107929 MS.gene63985:CDS 35.0%
ATTTGCATTTATCTTGGCCT+TGG + chr1.4:1110342-1110361 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG - chr1.4:1109729-1109748 MS.gene63985:intron 35.0%
GAAAGAATCAATTTCAGTGG+AGG + chr1.4:1109253-1109272 None:intergenic 35.0%
GACCACATCTTCAGTAAATA+AGG - chr1.4:1107992-1108011 MS.gene63985:CDS 35.0%
GATGCCAAAGATTTAGTAGA+AGG - chr1.4:1109696-1109715 MS.gene63985:intron 35.0%
GATTGAGCAGCAATAAATGA+GGG + chr1.4:1109441-1109460 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1.4:1108214-1108233 MS.gene63985:CDS 35.0%
GTCAAATGTGATCCTTCTAA+AGG - chr1.4:1108904-1108923 MS.gene63985:CDS 35.0%
GTTCAAATTCAAATTCGGGT+AGG - chr1.4:1109478-1109497 MS.gene63985:intron 35.0%
TAGAAGGATCACATTTGACA+TGG + chr1.4:1108903-1108922 None:intergenic 35.0%
TAGTAGAGAACAATTGCCTA+AGG - chr1.4:1110187-1110206 MS.gene63985:intron 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1.4:1107902-1107921 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG + chr1.4:1109327-1109346 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG + chr1.4:1109442-1109461 None:intergenic 35.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1.4:1107887-1107906 MS.gene63985:CDS 35.0%
! AAGTCAGATGCAATTTTCTC+AGG + chr1.4:1109885-1109904 None:intergenic 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG + chr1.4:1110316-1110335 None:intergenic 35.0%
! CTCCTTATTTACTGAAGATG+TGG + chr1.4:1107997-1108016 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG + chr1.4:1109219-1109238 None:intergenic 35.0%
! TCTTGATTCTGAGGAGAATT+AGG + chr1.4:1109318-1109337 None:intergenic 35.0%
!! AGATCATCATGTTGTTTCTG+AGG - chr1.4:1107033-1107052 MS.gene63985:intron 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG + chr1.4:1109136-1109155 None:intergenic 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1.4:1108314-1108333 MS.gene63985:CDS 35.0%
!!! ATGCCATTTTTCTTTCGTCA+AGG - chr1.4:1110677-1110696 MS.gene63985:intron 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG + chr1.4:1109732-1109751 None:intergenic 35.0%
AAAACGACACACTTAGAGCA+AGG + chr1.4:1108658-1108677 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1.4:1107696-1107715 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1.4:1108724-1108743 MS.gene63985:CDS 40.0%
AACACCTTCAAGTCAGGTTT+CGG - chr1.4:1109998-1110017 MS.gene63985:CDS 40.0%
AAGAAGAGACATTCCTTACC+TGG - chr1.4:1110410-1110429 MS.gene63985:intron 40.0%
AAGGTGATTCTGCTTGGAAA+TGG - chr1.4:1108923-1108942 MS.gene63985:CDS 40.0%
AATATGTACGACCGAACAGT+CGG - chr1.4:1108999-1109018 MS.gene63985:CDS 40.0%
AATCATGATTCAGGCTCAAG+AGG - chr1.4:1110164-1110183 MS.gene63985:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1.4:1108808-1108827 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG + chr1.4:1109607-1109626 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG - chr1.4:1109606-1109625 MS.gene63985:CDS 40.0%
AGATGCATGAGTGCTATCTT+TGG + chr1.4:1109031-1109050 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1.4:1108206-1108225 MS.gene63985:CDS 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1.4:1108159-1108178 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1.4:1108193-1108212 MS.gene63985:CDS 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1.4:1107703-1107722 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1.4:1108188-1108207 None:intergenic 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1.4:1108858-1108877 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG + chr1.4:1108919-1108938 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1.4:1107065-1107084 MS.gene63985:intron 40.0%
CTGAATCAACAACATTGCCA+CGG + chr1.4:1109827-1109846 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG - chr1.4:1110155-1110174 MS.gene63985:intron 40.0%
GGAAAGAGACGCAATTCATT+TGG - chr1.4:1110221-1110240 MS.gene63985:intron 40.0%
GGAATTGTCATATAGCTTCC+CGG + chr1.4:1109966-1109985 None:intergenic 40.0%
GGAGAGATGGATGTTTGTTT+CGG - chr1.4:1108948-1108967 MS.gene63985:CDS 40.0%
GGATCACATTTGACATGGAT+AGG + chr1.4:1108898-1108917 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG - chr1.4:1109944-1109963 MS.gene63985:CDS 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1.4:1108143-1108162 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG - chr1.4:1109035-1109054 MS.gene63985:CDS 40.0%
TATTCTCAACAAGCTTCACC+GGG - chr1.4:1109945-1109964 MS.gene63985:CDS 40.0%
TGAATCAACAACATTGCCAC+GGG + chr1.4:1109826-1109845 None:intergenic 40.0%
TGATTCTGCTTGGAAATGGT+TGG - chr1.4:1108927-1108946 MS.gene63985:CDS 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1.4:1108123-1108142 None:intergenic 40.0%
TTAAGGTTAATCACATGCGG+TGG - chr1.4:1106992-1107011 MS.gene63985:intron 40.0%
TTGGTAGGTTCTTGATCAGT+GGG + chr1.4:1110263-1110282 None:intergenic 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1.4:1107141-1107160 None:intergenic 40.0%
TTTCCATTCAGCTGATCCTT+AGG + chr1.4:1110206-1110225 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1.4:1108852-1108871 MS.gene63985:CDS 40.0%
TTTGGTAGGTTCTTGATCAG+TGG + chr1.4:1110264-1110283 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1.4:1107919-1107938 MS.gene63985:CDS 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG + chr1.4:1109598-1109617 None:intergenic 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1.4:1108757-1108776 MS.gene63985:CDS 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG - chr1.4:1108917-1108936 MS.gene63985:CDS 40.0%
! GAATCATGATTTGCATTCGC+AGG + chr1.4:1110155-1110174 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1.4:1108862-1108881 None:intergenic 40.0%
! TCAGCATTTCTGGAAGGATA+GGG + chr1.4:1109597-1109616 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG + chr1.4:1110315-1110334 None:intergenic 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1.4:1107121-1107140 MS.gene63985:intron 40.0%
AACAACATTAGGCTCAGCTG+AGG + chr1.4:1108051-1108070 None:intergenic 45.0%
ACAAAGGGCAATGGTTCATC+TGG - chr1.4:1110494-1110513 MS.gene63985:intron 45.0%
ACCTGACAGATCAGAGACTT+TGG - chr1.4:1109662-1109681 MS.gene63985:CDS 45.0%
ATCTGGACTTGATCTTGGAG+AGG + chr1.4:1110366-1110385 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG + chr1.4:1110383-1110402 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG + chr1.4:1110147-1110166 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1.4:1108110-1108129 None:intergenic 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1.4:1107603-1107622 None:intergenic 45.0%
CTTGGAAATGGTTGGAGAGA+TGG - chr1.4:1108935-1108954 MS.gene63985:CDS 45.0%
GAAATCCTGCAGAACAGTCT+CGG + chr1.4:1109922-1109941 None:intergenic 45.0%
GACTGTTCGGTCGTACATAT+TGG + chr1.4:1109000-1109019 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG + chr1.4:1110458-1110477 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG + chr1.4:1109621-1109640 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1.4:1108475-1108494 MS.gene63985:CDS 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1.4:1108120-1108139 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG - chr1.4:1109992-1110011 MS.gene63985:CDS 45.0%
TCATTATCTCCAGCTCTGCA+GGG - chr1.4:1110470-1110489 MS.gene63985:intron 45.0%
TCCAAAGTCTCTGATCTGTC+AGG + chr1.4:1109666-1109685 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG + chr1.4:1110371-1110390 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1.4:1108151-1108170 MS.gene63985:CDS 45.0%
TTGCCTAAGGATCAGCTGAA+TGG - chr1.4:1110200-1110219 MS.gene63985:intron 45.0%
TTTGCTCGACCAGGATGTAT+CGG - chr1.4:1109509-1109528 MS.gene63985:intron 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG + chr1.4:1109151-1109170 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1.4:1107934-1107953 MS.gene63985:CDS 45.0%
! TCAGGATCAGCATTTCTGGA+AGG + chr1.4:1109603-1109622 None:intergenic 45.0%
! TGTGTAGCTTGCATGAAACG+GGG + chr1.4:1110314-1110333 None:intergenic 45.0%
! TTCACCGAAACCTGACTTGA+AGG + chr1.4:1110005-1110024 None:intergenic 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1.4:1108394-1108413 MS.gene63985:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG + chr1.4:1109013-1109032 None:intergenic 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG + chr1.4:1109987-1110006 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG + chr1.4:1109216-1109235 None:intergenic 45.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1.4:1108367-1108386 MS.gene63985:CDS 50.0%
ACAAACCGAGACTGTTCTGC+AGG - chr1.4:1109914-1109933 MS.gene63985:CDS 50.0%
AGGCTCAACAGCATGCTCTT+TGG + chr1.4:1109865-1109884 None:intergenic 50.0%
AGGTTAATCACATGCGGTGG+TGG - chr1.4:1106995-1107014 MS.gene63985:intron 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1.4:1108368-1108387 MS.gene63985:CDS 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1.4:1108154-1108173 MS.gene63985:CDS 50.0%
CATTCCTTACCTGGTGCAAC+TGG - chr1.4:1110419-1110438 MS.gene63985:intron 50.0%
CTCGGATGGTAGAGGTGAAT+CGG + chr1.4:1109097-1109116 None:intergenic 50.0%
CTTACCAGTTGCACCAGGTA+AGG + chr1.4:1110426-1110445 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG - chr1.4:1109807-1109826 MS.gene63985:CDS 50.0%
GCAAGCTACACAATCTGCCA+AGG - chr1.4:1110322-1110341 MS.gene63985:intron 50.0%
GGCAGTCTTCTCTTCATCCT+CGG + chr1.4:1109115-1109134 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG - chr1.4:1110469-1110488 MS.gene63985:intron 50.0%
GTCTTCTCTTCATCCTCGGA+TGG + chr1.4:1109111-1109130 None:intergenic 50.0%
GTGACTCAACCGATACATCC+TGG + chr1.4:1109521-1109540 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG - chr1.4:1109378-1109397 MS.gene63985:intron 50.0%
TCTTCATCCTCGGATGGTAG+AGG + chr1.4:1109105-1109124 None:intergenic 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG + chr1.4:1109386-1109405 None:intergenic 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1.4:1107691-1107710 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG - chr1.4:1110052-1110071 MS.gene63985:CDS 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1.4:1108383-1108402 MS.gene63985:CDS 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG + chr1.4:1110257-1110276 None:intergenic 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1.4:1106998-1107017 MS.gene63985:intron 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG + chr1.4:1109855-1109874 None:intergenic 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG - chr1.4:1110119-1110138 MS.gene63985:CDS 50.0%
ACCTGGTGCAACTGGTAAGC+AGG - chr1.4:1110427-1110446 MS.gene63985:intron 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG - chr1.4:1109206-1109225 MS.gene63985:intron 55.0%
CCTGGTGCAACTGGTAAGCA+GGG - chr1.4:1110428-1110447 MS.gene63985:intron 55.0%
CGATTCACCTCTACCATCCG+AGG - chr1.4:1109095-1109114 MS.gene63985:CDS 55.0%
CTCAGACCAACTAGAGACCG+AGG - chr1.4:1109377-1109396 MS.gene63985:intron 55.0%
CTGGATCAAGCAGTAGACGC+AGG - chr1.4:1110051-1110070 MS.gene63985:CDS 55.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1.4:1108459-1108478 None:intergenic 55.0%
TCAAATTCGGGTAGGCCGAG+TGG - chr1.4:1109486-1109505 MS.gene63985:intron 55.0%
TCCTGGTCGAGCAAACCACT+CGG + chr1.4:1109504-1109523 None:intergenic 55.0%
! ATGGTTAGGGGTGTGTCGTC+TGG - chr1.4:1111029-1111048 MS.gene63985:CDS 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG + chr1.4:1109379-1109398 None:intergenic 55.0%
! TGGTTAGGGGTGTGTCGTCT+GGG - chr1.4:1111030-1111049 MS.gene63985:CDS 55.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1.4:1108375-1108394 MS.gene63985:CDS 60.0%
CCAGCTCTGCAGGGCACAAA+GGG - chr1.4:1110479-1110498 MS.gene63985:intron 60.0%
CCCTGCTTACCAGTTGCACC+AGG + chr1.4:1110431-1110450 None:intergenic 60.0%
CTGCAGGGCACAAAGGGCAA+TGG - chr1.4:1110485-1110504 MS.gene63985:intron 60.0%
TCCAGCTCTGCAGGGCACAA+AGG - chr1.4:1110478-1110497 MS.gene63985:intron 60.0%
TCGTGGATCTAGGCTCGGCA+TGG + chr1.4:1107686-1107705 None:intergenic 60.0%
! GGTTAGGGGTGTGTCGTCTG+GGG - chr1.4:1111031-1111050 MS.gene63985:CDS 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG - chr1.4:1110065-1110084 MS.gene63985:CDS 60.0%
!! ATCACATGCGGTGGTGGTGG+TGG - chr1.4:1107001-1107020 MS.gene63985:intron 60.0%
CCCTTTGTGCCCTGCAGAGC+TGG + chr1.4:1110482-1110501 None:intergenic 65.0%
! AGGGGTGTGTCGTCTGGGGT+TGG - chr1.4:1111035-1111054 MS.gene63985:CDS 65.0%
! GGGGTGTGTCGTCTGGGGTT+GGG - chr1.4:1111036-1111055 MS.gene63985:CDS 65.0%
!! GCCGAGTGGTTTGCTCGACC+AGG - chr1.4:1109500-1109519 MS.gene63985:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 1106971 1111071 1106971 ID=MS.gene63985
chr1.4 mRNA 1106971 1111071 1106971 ID=MS.gene63985.t1;Parent=MS.gene63985
chr1.4 exon 1110988 1111071 1110988 ID=MS.gene63985.t1.exon1;Parent=MS.gene63985.t1
chr1.4 CDS 1110988 1111071 1110988 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
chr1.4 exon 1109807 1110139 1109807 ID=MS.gene63985.t1.exon2;Parent=MS.gene63985.t1
chr1.4 CDS 1109807 1110139 1109807 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
chr1.4 exon 1109520 1109711 1109520 ID=MS.gene63985.t1.exon3;Parent=MS.gene63985.t1
chr1.4 CDS 1109520 1109711 1109520 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
chr1.4 exon 1109264 1109344 1109264 ID=MS.gene63985.t1.exon4;Parent=MS.gene63985.t1
chr1.4 CDS 1109264 1109344 1109264 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
chr1.4 exon 1107527 1109174 1107527 ID=MS.gene63985.t1.exon5;Parent=MS.gene63985.t1
chr1.4 CDS 1107527 1109174 1107527 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
chr1.4 exon 1106971 1107005 1106971 ID=MS.gene63985.t1.exon6;Parent=MS.gene63985.t1
chr1.4 CDS 1106971 1107005 1106971 ID=cds.MS.gene63985.t1;Parent=MS.gene63985.t1
Gene Sequence

>MS.gene63985

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGGTGACAAAGAAGATCATCATGTTGTTTCTGAGGTGAATCTCTCTCTCTCTTAGATAATTCCGAGGTTTAATGTTTTTCACAATTTTTCAGTTTTATGTGTGTGTTTTTGTTTGATCCGAGGATGTTTCATGCAACCAACTTCGTTTCTTTTCTTATTATCATGTTTCTTGCATTCATTAATTACTTAATTAATTTGCTGTTTAATGTTTTATTTTCTTTCTATTTTTGGATTTATATTCAAGATTTCGTTCATAATTGAATAGTTATAAGGTGCTGTTTGGATAACATTGAATAGGAAAATTCATGTTTTTTTTTTTTGAATTTCCTTTTTTTTTTTTGTGATCTTTGATCTCAAGATTAGTAATGAATATCATGTAGTTGATGATGCTCTCTGAAAATCATTTTCCTTGCTTGATTTTACTTCTTTACTAATTTTTCTTGTTTATTTTGATAATCACTAGTATTTCACGATGCTAGAAAATGTCACTTGATCTGATTATTGTGAATTAATTATTATTTTTCACATAATAATTGAAGTAAATTAAATTCATGAGTGTGAATTATATACATCTTTATGCCAATGGGCTGTGACTTTTGATGTAAGTTGTACAATTTACGGCCGTTTTTTGTGCTTAGTTGATATGAACTTAGTTATTTGAACCATGCCGAGCCTAGATCCACGAGATCAAGTTTTGTGCATAAAACTTAGTTATAAACATCTAGATAAAGTTTGTGCATCGTATAAGTAAAATGAGATAGTTGCACATTGTACTGTAGTAAGTTTTATTGAATAAGTGAAATTTTGATCGTGATTCAGGAAATATATATTTATGCATTCAAGTTTGTTCTCACAATTGATTTTTCTTTAATGATGTTCCAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGTAAATAAGGAGACTTCAGAATATCCAAGTATTAGTTTTCAATCCTCAGCTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGTATGTTTCTTTTCTGAGGTTTTATGAATCAAAATCTTGTAAGGAGAAAACGCTCATTTTCCTTTTATAAATCTTTTGTTCGTGTTTCTTTTTAGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGTATATCTATTTGAATTTACTTCGTAGCTACTAATTTCATGATACCAAAATTTTATTCGTTTAATAGTTGTGGTTTCATTGAAGAGATATGTTATTACATTTACGTTACTATCAGATGATATGTGCTGCAAGCCTTGCTCTAAGTGTGTCGTTTTATTTTTTTACTGTGGTTTAGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGGTACAATTAACATATTGTTTGTTTTGCCTGTTTAACGTCATCCGTTTGTTCATTCATACTAAATCTTCTGTTGTTTCCTTCCATTGAAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATATGTACGACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAAGTTATTCTTCAGTTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCGGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTACGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCCAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTGAGAGAACAAACCGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACATAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAAGGGCAATGGTTCATCTGGTAAATTTCTACAACATTCCTTTCTAAAGATTACTTGCTACTTTGGTTTTTTAAACTTTACCATACCTAACATTTTCTTAGTTTTAGAATAGTCTTATGATATGTGACATCACATTGGTCCCCCGATTATATACCAAAAAATTGATCCTTATATAAAAGCAATGCCATTTTTCTTTCGTCAAGGACTAACATAATGTCATTATATAGACAGATTTTATGGCAAAAATGTGACATTTAAGGACTAATTTGTTATGATAAATACCTTTCGAGGATCAACTTTATATTTTTATCGAATTATGCTTCTAACCTTATTTATTACCAAAGAATATAATGACATACTTATTCATGTGACAGAGCTTTAGACGATATTTCTTTTGACTCTATGAATGATTACTTAAGAATTTTTTATCTTTGAAATTGTCATTTTCAGCTTAGTTTAGGGTTTATTTTCTGTTCCTAATATAATATAAGTTCTACATACATGGTAAGAAAAGAAATGTTGGAATTGTTAATATGGTTAGGGGTGTGTCGTCTGGGGTTGGGAATGTGTTCTTAG
Protein sequence

>MS.gene63985.t1

MVKSTSCLRLITCGGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSVNKETSEYPSISFQSSAEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQVILQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSTPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLLREQTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKHKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTKGNGSSGVCRLGLGMCS