AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64057.t1 MTR_1g025920 92.357 471 28 4 2 465 77 546 0.0 819
MS.gene64057.t1 MTR_1g025920 94.000 400 19 3 2 397 77 475 0.0 701
MS.gene64057.t1 MTR_3g114450 47.250 400 157 14 52 422 88 462 1.30e-95 296
MS.gene64057.t1 MTR_3g114340 45.694 418 169 12 56 442 22 412 1.35e-94 293
MS.gene64057.t1 MTR_3g114450 45.533 347 141 11 52 374 88 410 2.09e-76 245
MS.gene64057.t1 MTR_5g022790 37.750 400 206 14 30 405 51 431 2.76e-57 201
MS.gene64057.t1 MTR_3g114450 41.270 315 137 11 52 342 88 378 2.84e-53 183
MS.gene64057.t1 MTR_8g075120 38.333 420 204 16 42 435 51 441 5.47e-51 179
MS.gene64057.t1 MTR_5g022790 44.589 231 108 7 198 413 83 308 6.19e-48 169
MS.gene64057.t1 MTR_5g022790 44.589 231 108 7 198 413 83 308 1.50e-46 169
MS.gene64057.t1 MTR_5g088200 39.597 149 64 5 314 449 304 439 7.23e-21 96.3
MS.gene64057.t1 MTR_4g086860 42.500 80 42 3 330 405 99 178 3.59e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64057.t1 AT4G35890 30.687 466 256 19 12 455 76 496 2.89e-37 143
MS.gene64057.t1 AT5G66100 30.047 426 235 13 42 444 66 451 9.90e-34 132
MS.gene64057.t1 AT4G35890 30.287 383 202 18 12 374 76 413 4.95e-24 104
MS.gene64057.t1 AT5G21160 50.000 80 39 1 330 408 278 357 1.24e-19 92.4
MS.gene64057.t1 AT5G21160 50.000 80 39 1 330 408 278 357 1.28e-19 92.4
MS.gene64057.t1 AT5G21160 50.000 80 39 1 330 408 278 357 1.28e-19 92.4

Find 161 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTCGCAGGGGTCATTT+TGG 0.148293 1.3:+314014 MS.gene64057:CDS
ATCATCACCGGAACAATAAT+TGG 0.193438 1.3:+313967 MS.gene64057:CDS
CGCATAGGTGGCAGTAATAT+TGG 0.203036 1.3:+313810 MS.gene64057:CDS
TGGCAATTTACCAGGAATTT+TGG 0.216984 1.3:-312731 None:intergenic
TCTGGGAGGCATCCTTGGTT+GGG 0.234872 1.3:-314138 None:intergenic
CAGTGCCGTTGGATCCCTTT+AGG 0.239606 1.3:+314353 MS.gene64057:CDS
CCTCATAGGTCTTGGTCTAT+TGG 0.264773 1.3:-313787 None:intergenic
GCTAAAGTTCAAGCTGATTC+TGG 0.273086 1.3:+316865 MS.gene64057:CDS
GAAGATACCACTACGGCTTT+TGG 0.275195 1.3:-312514 None:intergenic
GGCAGTGGTGGAGGAGTAGG+AGG 0.281523 1.3:-313864 None:intergenic
ACAAGTTGAGGAGGCGTAAT+TGG 0.284415 1.3:+316833 MS.gene64057:CDS
AACGGCGTCGTTGTTGAAAT+TGG 0.288304 1.3:+312664 MS.gene64057:CDS
GGGATGCTTGGCACCATATT+CGG 0.292662 1.3:-313927 None:intergenic
AAGTTTGCTATCAAGGTAAT+TGG 0.297144 1.3:-314628 None:intergenic
CTCTGGGAGGCATCCTTGGT+TGG 0.307291 1.3:-314139 None:intergenic
ACCAGCTTAATTGATGTTAC+TGG 0.318719 1.3:-317019 None:intergenic
CTCATAGGTCTTGGTCTATT+GGG 0.326103 1.3:-313786 None:intergenic
TCTGAATCCGCCAAAATTCC+TGG 0.335892 1.3:+312721 MS.gene64057:CDS
GGAGGCAGTGGTGGAGGAGT+AGG 0.339484 1.3:-313867 None:intergenic
TTGCATCCCAATTATTGTTC+CGG 0.349708 1.3:-313974 None:intergenic
AGCAGTTAGCTACCCGAATA+TGG 0.350451 1.3:+313914 MS.gene64057:CDS
TGAGGAGTGTGTGAAATTAT+AGG 0.350833 1.3:-313711 None:intergenic
CCAGCCCCTGTTGCTTATCC+AGG 0.353471 1.3:+314227 MS.gene64057:CDS
CCAACCCTCTTCATCCATAT+TGG 0.355737 1.3:-314602 None:intergenic
TAACACAAAATCTAGTTCTA+TGG 0.369290 1.3:+313749 MS.gene64057:CDS
ATTCCTCTGGGAGGCATCCT+TGG 0.376229 1.3:-314143 None:intergenic
TGGATCACCTTCCACTTCTC+AGG 0.382040 1.3:+312801 MS.gene64057:CDS
AGTGCCGTTGGATCCCTTTA+GGG 0.384274 1.3:+314354 MS.gene64057:CDS
TGGGTGCCTCAATATTCCTC+TGG 0.388549 1.3:-314156 None:intergenic
CCTGGATAAGCAACAGGGGC+TGG 0.391893 1.3:-314227 None:intergenic
TACTAACCTGGATAAGCAAC+AGG 0.394341 1.3:-314233 None:intergenic
ATCTTCTCCGCTTCCGGCTC+CGG 0.396104 1.3:+312558 MS.gene64057:CDS
GCATAGGTGGCAGTAATATT+GGG 0.397369 1.3:+313811 MS.gene64057:CDS
CGGTTTCACCAGTTGAATCA+AGG 0.399168 1.3:+316890 MS.gene64057:CDS
CCTGTTGCTGCTGCTGCTGA+TGG 0.402479 1.3:+312781 MS.gene64057:CDS
GGATGCTTGGCACCATATTC+GGG 0.403622 1.3:-313926 None:intergenic
ACCTAAAATAATAATCAATC+TGG 0.410013 1.3:-314459 None:intergenic
TCGAGGGAAGTTTGCTATCA+AGG 0.415271 1.3:-314635 None:intergenic
AGTGGTATCTTCTCCGCTTC+CGG 0.415459 1.3:+312552 MS.gene64057:CDS
TTCAACAACGACGCCGTTCA+AGG 0.427300 1.3:-312659 None:intergenic
ATCTTCGATGAAGACAATTC+AGG 0.431298 1.3:-312754 None:intergenic
GCAGCAGGGAAGAATGTTGC+AGG 0.432943 1.3:-314406 None:intergenic
GGATAGGGAGGCAGTGGTGG+AGG 0.435951 1.3:-313873 None:intergenic
CTGGGAGGCATCCTTGGTTG+GGG 0.438261 1.3:-314137 None:intergenic
ACTATAACTATTCTGATGAT+AGG 0.438860 1.3:-314060 None:intergenic
AGTTCAAGCTGATTCTGGTT+CGG 0.446602 1.3:+316870 MS.gene64057:CDS
TGGGATGCAAGACCATTTGT+AGG 0.446821 1.3:+313987 MS.gene64057:CDS
TGATCTCTTGGAGAAGAGTC+AGG 0.447311 1.3:-313948 None:intergenic
TTCTTCTCCGAAGGCGGTAG+TGG 0.453789 1.3:+312534 MS.gene64057:CDS
GAAGATACCACTACCGCCTT+CGG 0.453822 1.3:-312541 None:intergenic
TTGTTCCGGTGATGATCTCT+TGG 0.454275 1.3:-313960 None:intergenic
CAATATGGATGAAGAGGGTT+GGG 0.454292 1.3:+314603 MS.gene64057:CDS
GAATTCTTCTCCACCGGAGC+CGG 0.454858 1.3:-312571 None:intergenic
GAAGGCATGTGGGGAAAGAC+TGG 0.455120 1.3:-314382 None:intergenic
CTGCCACCTATGCGCCTCAT+AGG 0.455237 1.3:-313801 None:intergenic
CCTATGCGCCTCATAGGTCT+TGG 0.458302 1.3:-313795 None:intergenic
AAGGGTTGTTTGTTCCATGC+AGG 0.459466 1.3:-312640 None:intergenic
GACAAAGAAGATTCTGCAGC+AGG 0.459929 1.3:-314421 None:intergenic
GCTGGAGGGAGCTGATATAC+AGG 0.463166 1.3:-313894 None:intergenic
TGTTGAAATTGGTCCTGTCA+TGG 0.467976 1.3:+312675 MS.gene64057:CDS
TTCTCCACCGGAGCCGGAAG+CGG 0.470249 1.3:-312565 None:intergenic
GCTTCAGATGGTGGCAATGC+AGG 0.470748 1.3:+312604 MS.gene64057:CDS
ATAAGCAACAGGGGCTGGGA+AGG 0.472138 1.3:-314222 None:intergenic
CTATTGCCCCTTGATTCAAC+TGG 0.478207 1.3:-316898 None:intergenic
CCATCAGCAGCAGCAGCAAC+AGG 0.483879 1.3:-312781 None:intergenic
AAGGGATCCAACGGCACTGT+TGG 0.484134 1.3:-314349 None:intergenic
ATCAGAATAGTTATAGTAGC+AGG 0.485706 1.3:+314066 MS.gene64057:CDS
TTGGATAAGCTGCTCTGAGC+AGG 0.491460 1.3:-313840 None:intergenic
GGGATGCAAGACCATTTGTA+GGG 0.497362 1.3:+313988 MS.gene64057:CDS
AAAGACTGGCATACCCCTAA+AGG 0.497452 1.3:-314368 None:intergenic
CTGGATAAGCAACAGGGGCT+GGG 0.497587 1.3:-314226 None:intergenic
ACAGGATAGGGAGGCAGTGG+TGG 0.499762 1.3:-313876 None:intergenic
AATTCAGGTGGCAATTTACC+AGG 0.503667 1.3:-312739 None:intergenic
TCATCACCGGAACAATAATT+GGG 0.503774 1.3:+313968 MS.gene64057:CDS
GGAGAAGAGTCAGGGATGCT+TGG 0.503808 1.3:-313939 None:intergenic
GGGTGCCTCAATATTCCTCT+GGG 0.509429 1.3:-314155 None:intergenic
TTCAAATGTTGTGGATGTCC+AGG 0.509539 1.3:+316686 MS.gene64057:CDS
GGGTCCCATCCACGAGGAGA+TGG 0.510424 1.3:+314035 MS.gene64057:CDS
GGGAAGAATGTTGCAGGAGA+AGG 0.510962 1.3:-314400 None:intergenic
CCAATATGGATGAAGAGGGT+TGG 0.512781 1.3:+314602 MS.gene64057:CDS
ATTTGTGAGTTGAGGCTGAC+GGG 0.517438 1.3:-316983 None:intergenic
GATAAAATAACTAAAGATGA+AGG 0.520758 1.3:+316952 MS.gene64057:CDS
GGGAAGGGTCCAATGGTTTG+AGG 0.520769 1.3:-314206 None:intergenic
AGGAACCATCTCCTCGTGGA+TGG 0.522413 1.3:-314040 None:intergenic
AAGACTGGCATACCCCTAAA+GGG 0.523111 1.3:-314367 None:intergenic
TGTTGCAGGGTGACAAGTTG+AGG 0.526692 1.3:+316821 MS.gene64057:intron
CGTCAGCCTCAACTCACAAA+TGG 0.529909 1.3:+316985 MS.gene64057:CDS
GTTGAAATTGGTCCTGTCAT+GGG 0.530038 1.3:+312676 MS.gene64057:CDS
TAAGCAACAGGGGCTGGGAA+GGG 0.532697 1.3:-314221 None:intergenic
CACGATTCAGCACCCATGAC+AGG 0.532993 1.3:-312688 None:intergenic
GGTGGCAGTAATATTGGGCC+TGG 0.533750 1.3:+313816 MS.gene64057:CDS
ATCAGACGGCGGAGGTTGGT+CGG 0.535735 1.3:-312485 None:intergenic
AATGCAGCAGTACTAGGTGG+TGG 0.536783 1.3:-314176 None:intergenic
TCAACAACGACGCCGTTCAA+GGG 0.537055 1.3:-312658 None:intergenic
TTGGCGGATTCAGACAAAGC+AGG 0.539245 1.3:-312712 None:intergenic
TTACTTTCCAACAGTGCCGT+TGG 0.541251 1.3:+314342 MS.gene64057:CDS
AATCATCAGACGGCGGAGGT+TGG 0.543248 1.3:-312489 None:intergenic
GATGAGAAATTCAAATGTTG+TGG 0.544990 1.3:+316677 MS.gene64057:CDS
GCAGTGGTGGAGGAGTAGGA+GGG 0.546328 1.3:-313863 None:intergenic
TGGTGGAGGAGTAGGAGGGT+TGG 0.546426 1.3:-313859 None:intergenic
TTCTCCGCTTCCGGCTCCGG+TGG 0.546586 1.3:+312561 MS.gene64057:CDS
AAAGTCCAATATGGATGAAG+AGG 0.548435 1.3:+314597 MS.gene64057:CDS
AAGCTGCTCTGAGCAGGACC+AGG 0.550819 1.3:-313834 None:intergenic
GGAGAATCATCAGACGGCGG+AGG 0.554255 1.3:-312493 None:intergenic
GTTGAGGAGGCGTAATTGGA+TGG 0.555391 1.3:+316837 MS.gene64057:CDS
GTACTCGAATTCTTCTCCAC+CGG 0.555708 1.3:-312577 None:intergenic
CCAATAGACCAAGACCTATG+AGG 0.556711 1.3:+313787 MS.gene64057:CDS
ATAGAACAAAACCTGAGAAG+TGG 0.557811 1.3:-312812 None:intergenic
GGGAGCTGATATACAGGATA+GGG 0.558140 1.3:-313888 None:intergenic
AGGGGCTGGGAAGGGTCCAA+TGG 0.558902 1.3:-314213 None:intergenic
AGTGGTATCTTCTTCTCCGA+AGG 0.559495 1.3:+312525 MS.gene64057:CDS
AATCTGGTTGACTATCACAT+TGG 0.560389 1.3:-314443 None:intergenic
GGTTTCACCAGTTGAATCAA+GGG 0.564091 1.3:+316891 MS.gene64057:CDS
TGGAACAAACAACCCTTGAA+CGG 0.565064 1.3:+312646 MS.gene64057:CDS
ATATTCGGGTAGCTAACTGC+TGG 0.570157 1.3:-313912 None:intergenic
AGGGAGCTGATATACAGGAT+AGG 0.571557 1.3:-313889 None:intergenic
TTACTAGTACCTTGTCTCTG+AGG 0.575253 1.3:-313729 None:intergenic
ATGTTGCAGGAGAAGGCATG+TGG 0.582951 1.3:-314393 None:intergenic
GTGCCGTTGGATCCCTTTAG+GGG 0.583743 1.3:+314355 MS.gene64057:CDS
GGAACCATCTCCTCGTGGAT+GGG 0.584828 1.3:-314039 None:intergenic
TTCGGGTAGCTAACTGCTGG+AGG 0.585123 1.3:-313909 None:intergenic
CCAAGACCTATGAGGCGCAT+AGG 0.587579 1.3:+313795 MS.gene64057:CDS
TATACAGGATAGGGAGGCAG+TGG 0.590637 1.3:-313879 None:intergenic
TCACTACCATTTGTGAGTTG+AGG 0.591791 1.3:-316991 None:intergenic
AAGTCCAATATGGATGAAGA+GGG 0.595576 1.3:+314598 MS.gene64057:CDS
CCCAAAATGACCCCTGCGAG+AGG 0.598890 1.3:-314015 None:intergenic
CATTTGTGAGTTGAGGCTGA+CGG 0.602082 1.3:-316984 None:intergenic
AGCTGATATACAGGATAGGG+AGG 0.604769 1.3:-313885 None:intergenic
ATGCAGCAGTACTAGGTGGT+GGG 0.611955 1.3:-314175 None:intergenic
CTGTCATGGGTGCTGAATCG+TGG 0.612412 1.3:+312689 MS.gene64057:CDS
TGTTGCAGGAGAAGGCATGT+GGG 0.612804 1.3:-314392 None:intergenic
AGTACAATAGCTTCAGATGG+TGG 0.616663 1.3:+312595 MS.gene64057:CDS
GTTTCACCAGTTGAATCAAG+GGG 0.618450 1.3:+316892 MS.gene64057:CDS
ATGCTCACGCACCCCAACCA+AGG 0.618534 1.3:+314126 MS.gene64057:CDS
CTTCTCCAAGAGATCATCAC+CGG 0.620515 1.3:+313955 MS.gene64057:CDS
TCGAGTACAATAGCTTCAGA+TGG 0.620623 1.3:+312592 MS.gene64057:CDS
TCAGATGGTGGCAATGCAGG+TGG 0.626983 1.3:+312607 MS.gene64057:CDS
GATCTCTTGGAGAAGAGTCA+GGG 0.628134 1.3:-313947 None:intergenic
GGTATCTTCTTCTCCGAAGG+CGG 0.628647 1.3:+312528 MS.gene64057:CDS
TGCCTCCCAGAGGAATATTG+AGG 0.631077 1.3:+314150 MS.gene64057:CDS
AGACCTATGAGGCGCATAGG+TGG 0.632771 1.3:+313798 MS.gene64057:CDS
GTTGCAGGAGAAGGCATGTG+GGG 0.633265 1.3:-314391 None:intergenic
AACAAAACCTGAGAAGTGGA+AGG 0.638012 1.3:-312808 None:intergenic
ACAAAGAAGATTCTGCAGCA+GGG 0.642310 1.3:-314420 None:intergenic
AGCAGGCGTGATCATGATCG+TGG 0.643741 1.3:+314083 MS.gene64057:CDS
TGATTCTCCAAAAGCCGTAG+TGG 0.645442 1.3:+312507 MS.gene64057:CDS
TGCAGGGTGACAAGTTGAGG+AGG 0.648309 1.3:+316824 MS.gene64057:intron
TCGGGTAGCTAACTGCTGGA+GGG 0.652848 1.3:-313908 None:intergenic
TGCCTCAATATTCCTCTGGG+AGG 0.653398 1.3:-314152 None:intergenic
GATGCAAGACCATTTGTAGG+GGG 0.654623 1.3:+313990 MS.gene64057:CDS
TTCGATGAAGACAATTCAGG+TGG 0.656189 1.3:-312751 None:intergenic
GGATGCAAGACCATTTGTAG+GGG 0.658072 1.3:+313989 MS.gene64057:CDS
CGGAGAAGAAGATACCACTA+CGG 0.664834 1.3:-312521 None:intergenic
TCACACACTCCTCAGAGACA+AGG 0.672139 1.3:+313720 MS.gene64057:CDS
GTGGTTCTAAGAAACCTGCA+TGG 0.673837 1.3:+312626 MS.gene64057:CDS
ATACCCCTAAAGGGATCCAA+CGG 0.676615 1.3:-314358 None:intergenic
TGATAGGAACCATCTCCTCG+TGG 0.683166 1.3:-314044 None:intergenic
TTTGGAGAATCATCAGACGG+CGG 0.696188 1.3:-312496 None:intergenic
ACTAACCTGGATAAGCAACA+GGG 0.704649 1.3:-314232 None:intergenic
CTAACCTGGATAAGCAACAG+GGG 0.712686 1.3:-314231 None:intergenic
CAACCAAGGATGCCTCCCAG+AGG 0.731995 1.3:+314140 MS.gene64057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTTATAATTATTTGA+TGG - chr1.3:315439-315458 None:intergenic 10.0%
!!! TTTTTTATTTTTTTCATTTG+AGG + chr1.3:313111-313130 MS.gene64057:intron 10.0%
!! AAAAAATATAATCAAGTACA+TGG - chr1.3:316108-316127 None:intergenic 15.0%
!! AAAAATATAATCAAGTACAT+GGG - chr1.3:316107-316126 None:intergenic 15.0%
!! AACAATAAACAGTATTAATT+GGG - chr1.3:316078-316097 None:intergenic 15.0%
!! ATTAAGTATAACATATTCAA+AGG - chr1.3:314706-314725 None:intergenic 15.0%
!! TAACAATAAACAGTATTAAT+TGG - chr1.3:316079-316098 None:intergenic 15.0%
!! TTAGATAAGAACAATTATTA+AGG + chr1.3:315860-315879 MS.gene64057:intron 15.0%
!! TTTGAATATGTTATACTTAA+TGG + chr1.3:314705-314724 MS.gene64057:intron 15.0%
!!! AAAATCATTTTCAGAAAATT+AGG - chr1.3:312845-312864 None:intergenic 15.0%
!!! AAATCATTTTCAGAAAATTA+GGG - chr1.3:312844-312863 None:intergenic 15.0%
!!! TTTTACTTTTATTGATTAGA+TGG + chr1.3:314851-314870 MS.gene64057:intron 15.0%
!! AAACTATCAATAAAGATCTA+GGG + chr1.3:315040-315059 MS.gene64057:intron 20.0%
!! AATATTCAAAATTGCAAAAG+AGG - chr1.3:316029-316048 None:intergenic 20.0%
!! AATCATGAAAATAGATGTTA+AGG - chr1.3:315890-315909 None:intergenic 20.0%
!! ACAATAAACAGTATTAATTG+GGG - chr1.3:316077-316096 None:intergenic 20.0%
!! ACCTAAAATAATAATCAATC+TGG - chr1.3:314462-314481 None:intergenic 20.0%
!! CTGACTATATTATTAACTAA+CGG + chr1.3:315731-315750 MS.gene64057:intron 20.0%
!! GATAAAATAACTAAAGATGA+AGG + chr1.3:316952-316971 MS.gene64057:CDS 20.0%
!! GTCAAATGTTTCTTATAAAT+AGG - chr1.3:315519-315538 None:intergenic 20.0%
!! TCTCTAATGTATAATGTATA+AGG - chr1.3:314883-314902 None:intergenic 20.0%
!!! ACCAGATTGATTATTATTTT+AGG + chr1.3:314458-314477 MS.gene64057:CDS 20.0%
!!! ATTTTATATCAACTTTAGTG+TGG + chr1.3:313637-313656 MS.gene64057:intron 20.0%
!!! TGATTTTCAAACTATTACTT+TGG + chr1.3:316930-316949 MS.gene64057:CDS 20.0%
!!! TGTTTTTTCAAGAAAAAGAA+AGG + chr1.3:315296-315315 MS.gene64057:intron 20.0%
! AAGATTTGTCAATAAATGAC+CGG - chr1.3:314758-314777 None:intergenic 25.0%
! AATATTTAGTGCATGACAAT+TGG + chr1.3:316232-316251 MS.gene64057:intron 25.0%
! ACATTATACATTAGAGAGTT+GGG + chr1.3:314886-314905 MS.gene64057:intron 25.0%
! ACTATAACTATTCTGATGAT+AGG - chr1.3:314063-314082 None:intergenic 25.0%
! AGTATCATCAAGAAAAACAA+AGG + chr1.3:315358-315377 MS.gene64057:intron 25.0%
! ATGATTGAACATTATAAACG+TGG + chr1.3:313277-313296 MS.gene64057:intron 25.0%
! ATTATATTGTATGCTGTCAA+TGG + chr1.3:315944-315963 MS.gene64057:intron 25.0%
! CATTGCATAAATGATGTATT+TGG + chr1.3:315549-315568 MS.gene64057:intron 25.0%
! GAAACTATCAATAAAGATCT+AGG + chr1.3:315039-315058 MS.gene64057:intron 25.0%
! TAATGAATTGGATCGAAATA+TGG + chr1.3:312901-312920 MS.gene64057:intron 25.0%
! TACATTATACATTAGAGAGT+TGG + chr1.3:314885-314904 MS.gene64057:intron 25.0%
! TACTAACATCTCTCATTAAA+AGG - chr1.3:316135-316154 None:intergenic 25.0%
! TATAATGCAAGAAAAATGCT+AGG - chr1.3:315230-315249 None:intergenic 25.0%
! TTCTTATAAATAAGACCGAA+TGG + chr1.3:315627-315646 MS.gene64057:intron 25.0%
! TTGGATTTATATCCAGTATT+AGG + chr1.3:313579-313598 MS.gene64057:intron 25.0%
! TTGTACTAAATAGCTTATTG+TGG + chr1.3:313449-313468 MS.gene64057:intron 25.0%
! TTTATGGAATATCTCTTTGA+AGG + chr1.3:316614-316633 MS.gene64057:intron 25.0%
!! AAGTAAATTTAACTTACTCG+AGG - chr1.3:314655-314674 None:intergenic 25.0%
!! AATGTTGTTTGTGTTGAATT+CGG + chr1.3:313209-313228 MS.gene64057:intron 25.0%
!! AGTAAATTTAACTTACTCGA+GGG - chr1.3:314654-314673 None:intergenic 25.0%
!! ATAGAATCCTAGAACAATTT+TGG - chr1.3:315695-315714 None:intergenic 25.0%
!! CTTTCTAGAGATTAATGAAT+TGG + chr1.3:312889-312908 MS.gene64057:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr1.3:315024-315043 None:intergenic 25.0%
!! TTAAAGAACAGCTTTTCAAA+AGG - chr1.3:316363-316382 None:intergenic 25.0%
!! TTTAATTACTAGTTTCGACA+TGG - chr1.3:312977-312996 None:intergenic 25.0%
!!! ACTGATTTGATTTTGTAATG+TGG + chr1.3:316513-316532 MS.gene64057:intron 25.0%
!!! ATTTTGGTGAACATATAGAA+AGG - chr1.3:315679-315698 None:intergenic 25.0%
!!! CAAAACTCTATTTCTGTTTT+TGG + chr1.3:313560-313579 MS.gene64057:intron 25.0%
!!! CTGAAAATGATTTTTTTTCC+AGG + chr1.3:312851-312870 MS.gene64057:intron 25.0%
!!! TAACACAAAATCTAGTTCTA+TGG + chr1.3:313749-313768 MS.gene64057:CDS 25.0%
!!! TGAGTTTTGCTTTTGTTTTA+TGG + chr1.3:316598-316617 MS.gene64057:intron 25.0%
!!! TGAGTTTTTAAAGTCCAATA+TGG + chr1.3:314588-314607 MS.gene64057:CDS 25.0%
AACACCTTTAGTAGAAAAGA+TGG + chr1.3:314911-314930 MS.gene64057:intron 30.0%
AACATAACTCCATGTGTATA+AGG - chr1.3:315185-315204 None:intergenic 30.0%
AACATATAGAAAGGAAGAAG+TGG - chr1.3:315670-315689 None:intergenic 30.0%
AAGCTATAGAATACTCCATT+CGG - chr1.3:315645-315664 None:intergenic 30.0%
ACAACAATTATATTCCTTCC+TGG - chr1.3:313182-313201 None:intergenic 30.0%
AGCTTATTGTGGAAAAATAG+TGG + chr1.3:313460-313479 MS.gene64057:intron 30.0%
AGGTATAAAGTGATTGTAAG+AGG + chr1.3:313131-313150 MS.gene64057:intron 30.0%
ATCAACTTTAGTGTGGTAAA+TGG + chr1.3:313644-313663 MS.gene64057:intron 30.0%
ATCAGAATAGTTATAGTAGC+AGG + chr1.3:314066-314085 MS.gene64057:CDS 30.0%
ATGTTCACCAAAATTGTTCT+AGG + chr1.3:315685-315704 MS.gene64057:intron 30.0%
ATTAACTAACGGAAATCAGT+GGG + chr1.3:315742-315761 MS.gene64057:intron 30.0%
ATTCAAAATTGCAAAAGAGG+AGG - chr1.3:316026-316045 None:intergenic 30.0%
CATTATACATTAGAGAGTTG+GGG + chr1.3:314887-314906 MS.gene64057:intron 30.0%
CTACTTCTTAGAGTGTATAA+TGG + chr1.3:315385-315404 MS.gene64057:intron 30.0%
GATAGGAACATAGTATTTGA+TGG + chr1.3:315075-315094 MS.gene64057:intron 30.0%
GATGAGAAATTCAAATGTTG+TGG + chr1.3:316677-316696 MS.gene64057:CDS 30.0%
TAATTGTGCAACACTTTCAA+TGG + chr1.3:316190-316209 MS.gene64057:intron 30.0%
TATACTGAGAATCCTGTATA+TGG + chr1.3:313232-313251 MS.gene64057:intron 30.0%
TATTAACTAACGGAAATCAG+TGG + chr1.3:315741-315760 MS.gene64057:intron 30.0%
TATTAGGCTATTGTCAAACA+GGG + chr1.3:313595-313614 MS.gene64057:intron 30.0%
TCAATGGATAGATACAATCT+TGG + chr1.3:316206-316225 MS.gene64057:intron 30.0%
TCTATGTTAACTTTGTTGCA+GGG + chr1.3:316808-316827 MS.gene64057:intron 30.0%
TGACAAAATGACAGAAAATG+AGG - chr1.3:314309-314328 None:intergenic 30.0%
TTATTGTTCCTCTATATGCA+TGG + chr1.3:316297-316316 MS.gene64057:intron 30.0%
TTCTTATAAATAGGACCAGA+GGG - chr1.3:315510-315529 None:intergenic 30.0%
TTTCTTATAAATAGGACCAG+AGG - chr1.3:315511-315530 None:intergenic 30.0%
! AACAAGCTTTAACCTACAAA+GGG - chr1.3:313061-313080 None:intergenic 30.0%
!! AAGTTTGCTATCAAGGTAAT+TGG - chr1.3:314631-314650 None:intergenic 30.0%
!! ACCTTTCTATTGTTTTGTAG+GGG + chr1.3:313688-313707 MS.gene64057:intron 30.0%
!! AGTTAATCTTTGATTTGCAC+CGG + chr1.3:314736-314755 MS.gene64057:intron 30.0%
!! AGTTTTGTCATCATCAACTA+GGG - chr1.3:313547-313566 None:intergenic 30.0%
!! GACCTTTCTATTGTTTTGTA+GGG + chr1.3:313687-313706 MS.gene64057:intron 30.0%
!! TGACCTTTCTATTGTTTTGT+AGG + chr1.3:313686-313705 MS.gene64057:intron 30.0%
AAAGTCCAATATGGATGAAG+AGG + chr1.3:314597-314616 MS.gene64057:CDS 35.0%
AAGTAAACAGAGAACATACC+TGG - chr1.3:312872-312891 None:intergenic 35.0%
AAGTCCAATATGGATGAAGA+GGG + chr1.3:314598-314617 MS.gene64057:CDS 35.0%
AATCTGGTTGACTATCACAT+TGG - chr1.3:314446-314465 None:intergenic 35.0%
AATGCTATTGAAAACTCACC+TGG - chr1.3:316707-316726 None:intergenic 35.0%
AATGGTTGCTAGTAGAAATC+AGG + chr1.3:315461-315480 MS.gene64057:intron 35.0%
ACCTTTAGTAGAAAAGATGG+TGG + chr1.3:314914-314933 MS.gene64057:intron 35.0%
AGATCTAGGGATTAATGAGT+TGG + chr1.3:315053-315072 MS.gene64057:intron 35.0%
ATAGAACAAAACCTGAGAAG+TGG - chr1.3:312815-312834 None:intergenic 35.0%
ATCATCACCGGAACAATAAT+TGG + chr1.3:313967-313986 MS.gene64057:CDS 35.0%
ATCTTCGATGAAGACAATTC+AGG - chr1.3:312757-312776 None:intergenic 35.0%
ATGGTGTGATGTGATGAAAA+TGG + chr1.3:315963-315982 MS.gene64057:intron 35.0%
ATGGTTGCTAGTAGAAATCA+GGG + chr1.3:315462-315481 MS.gene64057:intron 35.0%
ATTTAGTGCATGACAATTGG+AGG + chr1.3:316235-316254 MS.gene64057:intron 35.0%
CAAGTAATGTTGCTAAACAG+TGG - chr1.3:313522-313541 None:intergenic 35.0%
CTCTATATGCTACCATATAC+AGG - chr1.3:313247-313266 None:intergenic 35.0%
CTCTATGTTAACTTTGTTGC+AGG + chr1.3:316807-316826 MS.gene64057:intron 35.0%
CTGTATATGGTAGCATATAG+AGG + chr1.3:313245-313264 MS.gene64057:intron 35.0%
GAGTGTATAATGGTACAATC+AGG + chr1.3:315395-315414 MS.gene64057:intron 35.0%
GGAACTTTAATGAAATCACC+TGG + chr1.3:315984-316003 MS.gene64057:intron 35.0%
GGACAAATCATTAGAGATAG+AGG + chr1.3:314994-315013 MS.gene64057:intron 35.0%
GTATTAGGCTATTGTCAAAC+AGG + chr1.3:313594-313613 MS.gene64057:intron 35.0%
GTTTGACAATAGCCTAATAC+TGG - chr1.3:313594-313613 None:intergenic 35.0%
TCATCACCGGAACAATAATT+GGG + chr1.3:313968-313987 MS.gene64057:CDS 35.0%
TTGCATCCCAATTATTGTTC+CGG - chr1.3:313977-313996 None:intergenic 35.0%
! ACAAGCTTTAACCTACAAAG+GGG - chr1.3:313060-313079 None:intergenic 35.0%
! AGAGCACTTAACCATATGTT+AGG - chr1.3:315801-315820 None:intergenic 35.0%
! ATCACACACACCATCAATTT+TGG + chr1.3:315250-315269 MS.gene64057:intron 35.0%
! ATTTAAGAGCATGACAACTC+AGG - chr1.3:316402-316421 None:intergenic 35.0%
! CAACAAGCTTTAACCTACAA+AGG - chr1.3:313062-313081 None:intergenic 35.0%
! CAATTTACCAGGAATTTTGG+CGG - chr1.3:312731-312750 None:intergenic 35.0%
! TAGGGATTAATGAGTTGGAT+AGG + chr1.3:315058-315077 MS.gene64057:intron 35.0%
! TCCACCATCTTTTCTACTAA+AGG - chr1.3:314918-314937 None:intergenic 35.0%
! TGAGGAGTGTGTGAAATTAT+AGG - chr1.3:313714-313733 None:intergenic 35.0%
! TGGCAATTTACCAGGAATTT+TGG - chr1.3:312734-312753 None:intergenic 35.0%
! TTTGTTGTGCCTTATACACA+TGG + chr1.3:315173-315192 MS.gene64057:intron 35.0%
!! GAGTTTTGTCATCATCAACT+AGG - chr1.3:313548-313567 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr1.3:314922-314941 MS.gene64057:intron 35.0%
!!! GTTTTCCGGGTATTGAATAT+CGG + chr1.3:315764-315783 MS.gene64057:intron 35.0%
AAAAATGCAGCAGTACTAGG+TGG - chr1.3:314182-314201 None:intergenic 40.0%
AACAAAACCTGAGAAGTGGA+AGG - chr1.3:312811-312830 None:intergenic 40.0%
AATTCAGGTGGCAATTTACC+AGG - chr1.3:312742-312761 None:intergenic 40.0%
ACAAAGAAGATTCTGCAGCA+GGG - chr1.3:314423-314442 None:intergenic 40.0%
ACTAACCTGGATAAGCAACA+GGG - chr1.3:314235-314254 None:intergenic 40.0%
AGAGAGAAGACTTGTGGATT+TGG + chr1.3:314965-314984 MS.gene64057:intron 40.0%
AGTACAATAGCTTCAGATGG+TGG + chr1.3:312595-312614 MS.gene64057:CDS 40.0%
ATAAGAGACGCATACTAACC+TGG - chr1.3:314248-314267 None:intergenic 40.0%
CAATATGGATGAAGAGGGTT+GGG + chr1.3:314603-314622 MS.gene64057:CDS 40.0%
CGGTTCACTAACCTAACATA+TGG + chr1.3:315787-315806 MS.gene64057:intron 40.0%
CTCATAGGTCTTGGTCTATT+GGG - chr1.3:313789-313808 None:intergenic 40.0%
GATCCACGATTAACAACACT+GGG - chr1.3:313369-313388 None:intergenic 40.0%
GCATAGGTGGCAGTAATATT+GGG + chr1.3:313811-313830 MS.gene64057:CDS 40.0%
GCCCCTACAAAACAATAGAA+AGG - chr1.3:313692-313711 None:intergenic 40.0%
GCTTCTACTTGTGATACAAG+AGG + chr1.3:316444-316463 MS.gene64057:intron 40.0%
GGAGAAACAAAACATTAGCC+AGG - chr1.3:316005-316024 None:intergenic 40.0%
GGTTTCACCAGTTGAATCAA+GGG + chr1.3:316891-316910 MS.gene64057:CDS 40.0%
GTTGAAATTGGTCCTGTCAT+GGG + chr1.3:312676-312695 MS.gene64057:CDS 40.0%
GTTTCACCAGTTGAATCAAG+GGG + chr1.3:316892-316911 MS.gene64057:CDS 40.0%
TACTAACCTGGATAAGCAAC+AGG - chr1.3:314236-314255 None:intergenic 40.0%
TCAAATTCCGCTATGCCATA+GGG + chr1.3:313488-313507 MS.gene64057:intron 40.0%
TCACTACCATTTGTGAGTTG+AGG - chr1.3:316994-317013 None:intergenic 40.0%
TCGAGTACAATAGCTTCAGA+TGG + chr1.3:312592-312611 MS.gene64057:CDS 40.0%
TGATCCACGATTAACAACAC+TGG - chr1.3:313370-313389 None:intergenic 40.0%
TGGAACAAACAACCCTTGAA+CGG + chr1.3:312646-312665 MS.gene64057:CDS 40.0%
TGTTGAAATTGGTCCTGTCA+TGG + chr1.3:312675-312694 MS.gene64057:CDS 40.0%
TTACTAGTACCTTGTCTCTG+AGG - chr1.3:313732-313751 None:intergenic 40.0%
TTCAAATGTTGTGGATGTCC+AGG + chr1.3:316686-316705 MS.gene64057:CDS 40.0%
TTCAAATTCCGCTATGCCAT+AGG + chr1.3:313487-313506 MS.gene64057:intron 40.0%
TTCGATGAAGACAATTCAGG+TGG - chr1.3:312754-312773 None:intergenic 40.0%
TTTAGATGTGATACTCCCTC+TGG + chr1.3:315492-315511 MS.gene64057:intron 40.0%
! ACCTAGTACTGCTGCATTTT+TGG + chr1.3:314181-314200 MS.gene64057:CDS 40.0%
! AGTTCAAGCTGATTCTGGTT+CGG + chr1.3:316870-316889 MS.gene64057:CDS 40.0%
! ATATGGTTAAGTGCTCTGAG+TGG + chr1.3:315804-315823 MS.gene64057:intron 40.0%
! CCTAGTACTGCTGCATTTTT+GGG + chr1.3:314182-314201 MS.gene64057:CDS 40.0%
! GACTTGTGGATTTGGTAGTA+AGG + chr1.3:314973-314992 MS.gene64057:intron 40.0%
! GCTAAAGTTCAAGCTGATTC+TGG + chr1.3:316865-316884 MS.gene64057:CDS 40.0%
! TTAAGTGCTCTGAGTGGTTT+GGG + chr1.3:315810-315829 MS.gene64057:intron 40.0%
!! GCTTTTGGAGAATCATCAGA+CGG - chr1.3:312502-312521 None:intergenic 40.0%
!! TGTGATACAAGAGGTGTTAG+AGG + chr1.3:316453-316472 MS.gene64057:intron 40.0%
!!! TTTTTGGGTCCTCAAACCAT+TGG + chr1.3:314197-314216 MS.gene64057:CDS 40.0%
AAACAGGGTATGTCTTTGCG+AGG + chr1.3:313610-313629 MS.gene64057:intron 45.0%
AAAGACTGGCATACCCCTAA+AGG - chr1.3:314371-314390 None:intergenic 45.0%
AACCGCCGATATTCAATACC+CGG - chr1.3:315772-315791 None:intergenic 45.0%
AACGGCGTCGTTGTTGAAAT+TGG + chr1.3:312664-312683 MS.gene64057:CDS 45.0%
AAGACTGGCATACCCCTAAA+GGG - chr1.3:314370-314389 None:intergenic 45.0%
AAGGGTTGTTTGTTCCATGC+AGG - chr1.3:312643-312662 None:intergenic 45.0%
ACCAAGTGGGATCAGATACA+TGG - chr1.3:315122-315141 None:intergenic 45.0%
ACTATAGCCCTATGGCATAG+CGG - chr1.3:313498-313517 None:intergenic 45.0%
AGCAGTTAGCTACCCGAATA+TGG + chr1.3:313914-313933 MS.gene64057:CDS 45.0%
AGCATGCCTGCCAAAATTGA+TGG - chr1.3:315263-315282 None:intergenic 45.0%
AGCTGATATACAGGATAGGG+AGG - chr1.3:313888-313907 None:intergenic 45.0%
AGGGAGCTGATATACAGGAT+AGG - chr1.3:313892-313911 None:intergenic 45.0%
AGTGGTATCTTCTTCTCCGA+AGG + chr1.3:312525-312544 MS.gene64057:CDS 45.0%
ATACCCCTAAAGGGATCCAA+CGG - chr1.3:314361-314380 None:intergenic 45.0%
ATATTCGGGTAGCTAACTGC+TGG - chr1.3:313915-313934 None:intergenic 45.0%
ATGTATCTGATCCCACTTGG+TGG + chr1.3:315121-315140 MS.gene64057:intron 45.0%
CCAACCCTCTTCATCCATAT+TGG - chr1.3:314605-314624 None:intergenic 45.0%
CCAATAGACCAAGACCTATG+AGG + chr1.3:313787-313806 MS.gene64057:CDS 45.0%
CCAATATGGATGAAGAGGGT+TGG + chr1.3:314602-314621 MS.gene64057:CDS 45.0%
CCCAAAAATGCAGCAGTACT+AGG - chr1.3:314185-314204 None:intergenic 45.0%
CCTCACATCCATGCATATAG+AGG - chr1.3:316308-316327 None:intergenic 45.0%
CCTCATAGGTCTTGGTCTAT+TGG - chr1.3:313790-313809 None:intergenic 45.0%
CCTCTATATGCATGGATGTG+AGG + chr1.3:316305-316324 MS.gene64057:intron 45.0%
CGCATAGGTGGCAGTAATAT+TGG + chr1.3:313810-313829 MS.gene64057:CDS 45.0%
CGGAGAAGAAGATACCACTA+CGG - chr1.3:312524-312543 None:intergenic 45.0%
CGGTTTCACCAGTTGAATCA+AGG + chr1.3:316890-316909 MS.gene64057:CDS 45.0%
CTAACCTGGATAAGCAACAG+GGG - chr1.3:314234-314253 None:intergenic 45.0%
CTATTGCCCCTTGATTCAAC+TGG - chr1.3:316901-316920 None:intergenic 45.0%
CTTCTCCAAGAGATCATCAC+CGG + chr1.3:313955-313974 MS.gene64057:CDS 45.0%
GACAAAGAAGATTCTGCAGC+AGG - chr1.3:314424-314443 None:intergenic 45.0%
GACTTAGCAACACAACAGAG+AGG - chr1.3:313160-313179 None:intergenic 45.0%
GATCTCTTGGAGAAGAGTCA+GGG - chr1.3:313950-313969 None:intergenic 45.0%
GATGCAAGACCATTTGTAGG+GGG + chr1.3:313990-314009 MS.gene64057:CDS 45.0%
GCATGTAGAGAGAAGACTTG+TGG + chr1.3:314959-314978 MS.gene64057:intron 45.0%
GGATGCAAGACCATTTGTAG+GGG + chr1.3:313989-314008 MS.gene64057:CDS 45.0%
GGGAGCTGATATACAGGATA+GGG - chr1.3:313891-313910 None:intergenic 45.0%
GGGATGCAAGACCATTTGTA+GGG + chr1.3:313988-314007 MS.gene64057:CDS 45.0%
GTACTCGAATTCTTCTCCAC+CGG - chr1.3:312580-312599 None:intergenic 45.0%
TCCATGTATCTGATCCCACT+TGG + chr1.3:315118-315137 MS.gene64057:intron 45.0%
TCTACATGCCAAATCCACCT+AGG - chr1.3:314948-314967 None:intergenic 45.0%
TCTGAATCCGCCAAAATTCC+TGG + chr1.3:312721-312740 MS.gene64057:CDS 45.0%
TGATCTCTTGGAGAAGAGTC+AGG - chr1.3:313951-313970 None:intergenic 45.0%
TGATTCTCCAAAAGCCGTAG+TGG + chr1.3:312507-312526 MS.gene64057:CDS 45.0%
TGGGATGCAAGACCATTTGT+AGG + chr1.3:313987-314006 MS.gene64057:CDS 45.0%
TGTATCTGATCCCACTTGGT+GGG + chr1.3:315122-315141 MS.gene64057:intron 45.0%
TTACTTTCCAACAGTGCCGT+TGG + chr1.3:314342-314361 MS.gene64057:CDS 45.0%
TTGTTCCGGTGATGATCTCT+TGG - chr1.3:313963-313982 None:intergenic 45.0%
TTTGGAGAATCATCAGACGG+CGG - chr1.3:312499-312518 None:intergenic 45.0%
! AAACTAGGCCTAGGTGGATT+TGG + chr1.3:314937-314956 MS.gene64057:intron 45.0%
! ACAAGTTGAGGAGGCGTAAT+TGG + chr1.3:316833-316852 MS.gene64057:CDS 45.0%
! ATTTGTGAGTTGAGGCTGAC+GGG - chr1.3:316986-317005 None:intergenic 45.0%
! CATTTGTGAGTTGAGGCTGA+CGG - chr1.3:316987-317006 None:intergenic 45.0%
! GAACCCAGTGTTGTTAATCG+TGG + chr1.3:313363-313382 MS.gene64057:intron 45.0%
! GAAGATACCACTACGGCTTT+TGG - chr1.3:312517-312536 None:intergenic 45.0%
! GTTAAGTGCTCTGAGTGGTT+TGG + chr1.3:315809-315828 MS.gene64057:intron 45.0%
! TAAGTGCTCTGAGTGGTTTG+GGG + chr1.3:315811-315830 MS.gene64057:intron 45.0%
! TCTGTTGTGTTGCTAAGTCC+AGG + chr1.3:313161-313180 MS.gene64057:intron 45.0%
! TTGTGTTGCTAAGTCCAGGA+AGG + chr1.3:313165-313184 MS.gene64057:intron 45.0%
!! ACGGAAATCAGTGGGTTTTC+CGG + chr1.3:315750-315769 MS.gene64057:intron 45.0%
!! CACACACCATCAATTTTGGC+AGG + chr1.3:315254-315273 MS.gene64057:intron 45.0%
!! GTGGTTCTAAGAAACCTGCA+TGG + chr1.3:312626-312645 MS.gene64057:CDS 45.0%
!! TCGAGGGAAGTTTGCTATCA+AGG - chr1.3:314638-314657 None:intergenic 45.0%
!! TGTTACTGACTCCCCTTTGT+AGG + chr1.3:313046-313065 MS.gene64057:intron 45.0%
!! TTCCGGGTATTGAATATCGG+CGG + chr1.3:315767-315786 MS.gene64057:intron 45.0%
!!! ATAATTATAAAGTTTTTTAA+TGG + chr1.3:315443-315462 MS.gene64057:intron 5.0%
AATGCAGCAGTACTAGGTGG+TGG - chr1.3:314179-314198 None:intergenic 50.0%
ACAGTGGCACTATAGCCCTA+TGG - chr1.3:313506-313525 None:intergenic 50.0%
AGCATGACAACTCAGGTGTG+AGG - chr1.3:316395-316414 None:intergenic 50.0%
AGTGGTATCTTCTCCGCTTC+CGG + chr1.3:312552-312571 MS.gene64057:CDS 50.0%
ATGCAGCAGTACTAGGTGGT+GGG - chr1.3:314178-314197 None:intergenic 50.0%
CGTCAGCCTCAACTCACAAA+TGG + chr1.3:316985-317004 MS.gene64057:CDS 50.0%
GAAGATACCACTACCGCCTT+CGG - chr1.3:312544-312563 None:intergenic 50.0%
GCACTCTAGCTGCTCTATGA+CGG + chr1.3:313422-313441 MS.gene64057:intron 50.0%
GGATGCTTGGCACCATATTC+GGG - chr1.3:313929-313948 None:intergenic 50.0%
GGGAAGAATGTTGCAGGAGA+AGG - chr1.3:314403-314422 None:intergenic 50.0%
GGGATGCTTGGCACCATATT+CGG - chr1.3:313930-313949 None:intergenic 50.0%
GGGTGCCTCAATATTCCTCT+GGG - chr1.3:314158-314177 None:intergenic 50.0%
GGTATCTTCTTCTCCGAAGG+CGG + chr1.3:312528-312547 MS.gene64057:CDS 50.0%
TATACAGGATAGGGAGGCAG+TGG - chr1.3:313882-313901 None:intergenic 50.0%
TCAACAACGACGCCGTTCAA+GGG - chr1.3:312661-312680 None:intergenic 50.0%
TCACACACTCCTCAGAGACA+AGG + chr1.3:313720-313739 MS.gene64057:CDS 50.0%
TGATAGGAACCATCTCCTCG+TGG - chr1.3:314047-314066 None:intergenic 50.0%
TGCCTCAATATTCCTCTGGG+AGG - chr1.3:314155-314174 None:intergenic 50.0%
TGCCTCCCAGAGGAATATTG+AGG + chr1.3:314150-314169 MS.gene64057:CDS 50.0%
TGGATCACCTTCCACTTCTC+AGG + chr1.3:312801-312820 MS.gene64057:CDS 50.0%
TGGGTGCCTCAATATTCCTC+TGG - chr1.3:314159-314178 None:intergenic 50.0%
TGTTGCAGGGTGACAAGTTG+AGG + chr1.3:316821-316840 MS.gene64057:intron 50.0%
TTCAACAACGACGCCGTTCA+AGG - chr1.3:312662-312681 None:intergenic 50.0%
! AAGTGCTCTGAGTGGTTTGG+GGG + chr1.3:315812-315831 MS.gene64057:intron 50.0%
! AGTGCCGTTGGATCCCTTTA+GGG + chr1.3:314354-314373 MS.gene64057:CDS 50.0%
! ATGTTGCAGGAGAAGGCATG+TGG - chr1.3:314396-314415 None:intergenic 50.0%
! GTTGAGGAGGCGTAATTGGA+TGG + chr1.3:316837-316856 MS.gene64057:CDS 50.0%
! TGATCCCACTTGGTGGGATA+AGG + chr1.3:315128-315147 MS.gene64057:intron 50.0%
! TGTTGCAGGAGAAGGCATGT+GGG - chr1.3:314395-314414 None:intergenic 50.0%
! TTGGATAAGCTGCTCTGAGC+AGG - chr1.3:313843-313862 None:intergenic 50.0%
!! AGATGGTGGAAACTAGGCCT+AGG + chr1.3:314928-314947 MS.gene64057:intron 50.0%
!! CGGAAATCAGTGGGTTTTCC+GGG + chr1.3:315751-315770 MS.gene64057:intron 50.0%
!! TTGGCGGATTCAGACAAAGC+AGG - chr1.3:312715-312734 None:intergenic 50.0%
AAGGGATCCAACGGCACTGT+TGG - chr1.3:314352-314371 None:intergenic 55.0%
AATCATCAGACGGCGGAGGT+TGG - chr1.3:312492-312511 None:intergenic 55.0%
AGACCTATGAGGCGCATAGG+TGG + chr1.3:313798-313817 MS.gene64057:CDS 55.0%
AGCAGGCGTGATCATGATCG+TGG + chr1.3:314083-314102 MS.gene64057:CDS 55.0%
AGGAACCATCTCCTCGTGGA+TGG - chr1.3:314043-314062 None:intergenic 55.0%
ATAAGCAACAGGGGCTGGGA+AGG - chr1.3:314225-314244 None:intergenic 55.0%
CACGATTCAGCACCCATGAC+AGG - chr1.3:312691-312710 None:intergenic 55.0%
CCAAGACCTATGAGGCGCAT+AGG + chr1.3:313795-313814 MS.gene64057:CDS 55.0%
CCTATGCGCCTCATAGGTCT+TGG - chr1.3:313798-313817 None:intergenic 55.0%
CGAGAGGAACCCCCTACAAA+TGG - chr1.3:314002-314021 None:intergenic 55.0%
CTGGATAAGCAACAGGGGCT+GGG - chr1.3:314229-314248 None:intergenic 55.0%
GAATTCTTCTCCACCGGAGC+CGG - chr1.3:312574-312593 None:intergenic 55.0%
GCAGCAGGGAAGAATGTTGC+AGG - chr1.3:314409-314428 None:intergenic 55.0%
GCTGGAGGGAGCTGATATAC+AGG - chr1.3:313897-313916 None:intergenic 55.0%
GGAACCATCTCCTCGTGGAT+GGG - chr1.3:314042-314061 None:intergenic 55.0%
GGAGAAGAGTCAGGGATGCT+TGG - chr1.3:313942-313961 None:intergenic 55.0%
GGGAAGGGTCCAATGGTTTG+AGG - chr1.3:314209-314228 None:intergenic 55.0%
GGTGGCAGTAATATTGGGCC+TGG + chr1.3:313816-313835 MS.gene64057:CDS 55.0%
TAAGCAACAGGGGCTGGGAA+GGG - chr1.3:314224-314243 None:intergenic 55.0%
TCGGGTAGCTAACTGCTGGA+GGG - chr1.3:313911-313930 None:intergenic 55.0%
TGGTGGAAACTAGGCCTAGG+TGG + chr1.3:314931-314950 MS.gene64057:intron 55.0%
TTCGGGTAGCTAACTGCTGG+AGG - chr1.3:313912-313931 None:intergenic 55.0%
TTCTTCTCCGAAGGCGGTAG+TGG + chr1.3:312534-312553 MS.gene64057:CDS 55.0%
! AGTGCTCTGAGTGGTTTGGG+GGG + chr1.3:315813-315832 MS.gene64057:intron 55.0%
! CAGTGCCGTTGGATCCCTTT+AGG + chr1.3:314353-314372 MS.gene64057:CDS 55.0%
! CCACTTGGTGGGATAAGGCT+CGG + chr1.3:315133-315152 MS.gene64057:intron 55.0%
! CGAGCCTTATCCCACCAAGT+GGG - chr1.3:315135-315154 None:intergenic 55.0%
! GAAGGCATGTGGGGAAAGAC+TGG - chr1.3:314385-314404 None:intergenic 55.0%
! GCTTCAGATGGTGGCAATGC+AGG + chr1.3:312604-312623 MS.gene64057:CDS 55.0%
! GTGCCGTTGGATCCCTTTAG+GGG + chr1.3:314355-314374 MS.gene64057:CDS 55.0%
! GTTGCAGGAGAAGGCATGTG+GGG - chr1.3:314394-314413 None:intergenic 55.0%
! TCAGATGGTGGCAATGCAGG+TGG + chr1.3:312607-312626 MS.gene64057:CDS 55.0%
! TCCTCTCGCAGGGGTCATTT+TGG + chr1.3:314014-314033 MS.gene64057:CDS 55.0%
! TGCAGGGTGACAAGTTGAGG+AGG + chr1.3:316824-316843 MS.gene64057:intron 55.0%
!! ATTCCTCTGGGAGGCATCCT+TGG - chr1.3:314146-314165 None:intergenic 55.0%
!! CATTTTGGGTCCCATCCACG+AGG + chr1.3:314029-314048 MS.gene64057:CDS 55.0%
!! CCTCTCGCAGGGGTCATTTT+GGG + chr1.3:314015-314034 MS.gene64057:CDS 55.0%
!! CTGTCATGGGTGCTGAATCG+TGG + chr1.3:312689-312708 MS.gene64057:CDS 55.0%
!! TCTGGGAGGCATCCTTGGTT+GGG - chr1.3:314141-314160 None:intergenic 55.0%
ACAGGATAGGGAGGCAGTGG+TGG - chr1.3:313879-313898 None:intergenic 60.0%
ATCTTCTCCGCTTCCGGCTC+CGG + chr1.3:312558-312577 MS.gene64057:CDS 60.0%
ATGCTCACGCACCCCAACCA+AGG + chr1.3:314126-314145 MS.gene64057:CDS 60.0%
CAACCAAGGATGCCTCCCAG+AGG + chr1.3:314140-314159 MS.gene64057:CDS 60.0%
CCATCAGCAGCAGCAGCAAC+AGG - chr1.3:312784-312803 None:intergenic 60.0%
CCCAAAATGACCCCTGCGAG+AGG - chr1.3:314018-314037 None:intergenic 60.0%
CCTGGATAAGCAACAGGGGC+TGG - chr1.3:314230-314249 None:intergenic 60.0%
CCTGTTGCTGCTGCTGCTGA+TGG + chr1.3:312781-312800 MS.gene64057:CDS 60.0%
CTGCCACCTATGCGCCTCAT+AGG - chr1.3:313804-313823 None:intergenic 60.0%
GGAGAATCATCAGACGGCGG+AGG - chr1.3:312496-312515 None:intergenic 60.0%
TGGTGGAGGAGTAGGAGGGT+TGG - chr1.3:313862-313881 None:intergenic 60.0%
TGTAGGGGGTTCCTCTCGCA+GGG + chr1.3:314004-314023 MS.gene64057:CDS 60.0%
TTGTAGGGGGTTCCTCTCGC+AGG + chr1.3:314003-314022 MS.gene64057:CDS 60.0%
! AAGCTGCTCTGAGCAGGACC+AGG - chr1.3:313837-313856 None:intergenic 60.0%
! ATCAGACGGCGGAGGTTGGT+CGG - chr1.3:312488-312507 None:intergenic 60.0%
! CCAGCCCCTGTTGCTTATCC+AGG + chr1.3:314227-314246 MS.gene64057:CDS 60.0%
! CCGAGCCTTATCCCACCAAG+TGG - chr1.3:315136-315155 None:intergenic 60.0%
! GCAGTGGTGGAGGAGTAGGA+GGG - chr1.3:313866-313885 None:intergenic 60.0%
!! CTCTGGGAGGCATCCTTGGT+TGG - chr1.3:314142-314161 None:intergenic 60.0%
!! CTGGGAGGCATCCTTGGTTG+GGG - chr1.3:314140-314159 None:intergenic 60.0%
AGGGGCTGGGAAGGGTCCAA+TGG - chr1.3:314216-314235 None:intergenic 65.0%
GGATAGGGAGGCAGTGGTGG+AGG - chr1.3:313876-313895 None:intergenic 65.0%
GGGTCCCATCCACGAGGAGA+TGG + chr1.3:314035-314054 MS.gene64057:CDS 65.0%
GTAGGGGGTTCCTCTCGCAG+GGG + chr1.3:314005-314024 MS.gene64057:CDS 65.0%
TTCTCCACCGGAGCCGGAAG+CGG - chr1.3:312568-312587 None:intergenic 65.0%
! GGAGGCAGTGGTGGAGGAGT+AGG - chr1.3:313870-313889 None:intergenic 65.0%
! GGCAGTGGTGGAGGAGTAGG+AGG - chr1.3:313867-313886 None:intergenic 65.0%
TTCTCCGCTTCCGGCTCCGG+TGG + chr1.3:312561-312580 MS.gene64057:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 312481 317035 312481 ID=MS.gene64057
chr1.3 mRNA 312481 317035 312481 ID=MS.gene64057.t1;Parent=MS.gene64057
chr1.3 exon 312481 312822 312481 ID=MS.gene64057.t1.exon1;Parent=MS.gene64057.t1
chr1.3 CDS 312481 312822 312481 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
chr1.3 exon 313708 314248 313708 ID=MS.gene64057.t1.exon2;Parent=MS.gene64057.t1
chr1.3 CDS 313708 314248 313708 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
chr1.3 exon 314335 314479 314335 ID=MS.gene64057.t1.exon3;Parent=MS.gene64057.t1
chr1.3 CDS 314335 314479 314335 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
chr1.3 exon 314567 314657 314567 ID=MS.gene64057.t1.exon4;Parent=MS.gene64057.t1
chr1.3 CDS 314567 314657 314567 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
chr1.3 exon 316636 316707 316636 ID=MS.gene64057.t1.exon5;Parent=MS.gene64057.t1
chr1.3 CDS 316636 316707 316636 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
chr1.3 exon 316829 317035 316829 ID=MS.gene64057.t1.exon6;Parent=MS.gene64057.t1
chr1.3 CDS 316829 317035 316829 ID=cds.MS.gene64057.t1;Parent=MS.gene64057.t1
Gene Sequence

>MS.gene64057

ATGGCCGACCAACCTCCGCCGTCTGATGATTCTCCAAAAGCCGTAGTGGTATCTTCTTCTCCGAAGGCGGTAGTGGTATCTTCTCCGCTTCCGGCTCCGGTGGAGAAGAATTCGAGTACAATAGCTTCAGATGGTGGCAATGCAGGTGGTTCTAAGAAACCTGCATGGAACAAACAACCCTTGAACGGCGTCGTTGTTGAAATTGGTCCTGTCATGGGTGCTGAATCGTGGCCTGCTTTGTCTGAATCCGCCAAAATTCCTGGTAAATTGCCACCTGAATTGTCTTCATCGAAGATTACACCTGTTGCTGCTGCTGCTGATGGATCACCTTCCACTTCTCAGGTTTTGTTCTATTACTTTCCCTAATTTTCTGAAAATGATTTTTTTTCCAGGTATGTTCTCTGTTTACTTTCTAGAGATTAATGAATTGGATCGAAATATGGTTTATGAATTGAATGAAGCAATGATAGATACACTGACATGACACTGAAAACCATGTCGAAACTAGTAATTAAAAAAAAAAAAAGTTCAATTGAACGTAGTTTCGTTAGAGTAATTTGATTAATGTTACTGACTCCCCTTTGTAGGTTAAAGCTTGTTGTTATTGTATTATCTTTGTTTACTTTGTTGTTTTTTATTTTTTTCATTTGAGGTATAAAGTGATTGTAAGAGGAATCCTCTCTGTTGTGTTGCTAAGTCCAGGAAGGAATATAATTGTTGTTGATGTAAATGTTGTTTGTGTTGAATTCGGTATACTGAGAATCCTGTATATGGTAGCATATAGAGGTGTATCGATATGATTGAACATTATAAACGTGGATATGAGAGATATGATAATATTTTATAATTCTGTTATGATTTGTTATGCATAGCACTTATGATGAACCCAGTGTTGTTAATCGTGGATCACAGAAAATAGCAGTTTGTTAATATTCTGCTATGCACTCTAGCTGCTCTATGACGGTATTTTGTACTAAATAGCTTATTGTGGAAAAATAGTGGTTTGTTCAAATTCCGCTATGCCATAGGGCTATAGTGCCACTGTTTAGCAACATTACTTGAGCCCTAGTTGATGATGACAAAACTCTATTTCTGTTTTTGGATTTATATCCAGTATTAGGCTATTGTCAAACAGGGTATGTCTTTGCGAGGAAGAATTTTATATCAACTTTAGTGTGGTAAATGGCGAGTCTTATATGCTTGCATGACCTTTCTATTGTTTTGTAGGGGCCTATAATTTCACACACTCCTCAGAGACAAGGTACTAGTAACACAAAATCTAGTTCTATGGCAAACAATAATGTGCCCAATAGACCAAGACCTATGAGGCGCATAGGTGGCAGTAATATTGGGCCTGGTCCTGCTCAGAGCAGCTTATCCAACCCTCCTACTCCTCCACCACTGCCTCCCTATCCTGTATATCAGCTCCCTCCAGCAGTTAGCTACCCGAATATGGTGCCAAGCATCCCTGACTCTTCTCCAAGAGATCATCACCGGAACAATAATTGGGATGCAAGACCATTTGTAGGGGGTTCCTCTCGCAGGGGTCATTTTGGGTCCCATCCACGAGGAGATGGTTCCTATCATCAGAATAGTTATAGTAGCAGGCGTGATCATGATCGTGGAAATTACGCAAACACTAGAGATGCTCACGCACCCCAACCAAGGATGCCTCCCAGAGGAATATTGAGGCACCCACCACCTAGTACTGCTGCATTTTTGGGTCCTCAAACCATTGGACCCTTCCCAGCCCCTGTTGCTTATCCAGGTTAGTATGCGTCTCTTATTCATCAATTCTGTTTATACGAAATTTAATATTACTAATCCTCATTTTCTGTCATTTTGTCATTTTAGATTTTTATTACTTTCCAACAGTGCCGTTGGATCCCTTTAGGGGTATGCCAGTCTTTCCCCACATGCCTTCTCCTGCAACATTCTTCCCTGCTGCAGAATCTTCTTTGTCCAATGTGATAGTCAACCAGATTGATTATTATTTTAGGTAGTTTTAATATGTTTCTGTTCTTTTTGTTTATCAATAATGTTTGACAGTTGAATTCTGTATTAATTGCTGATTTATTTTTGACAGTGATATTAATTTAGCGAATGATGAGTTTTTAAAGTCCAATATGGATGAAGAGGGTTGGGTTCCAATTACCTTGATAGCAAACTTCCCTCGAGTAAGTTAAATTTACTTTGATTAATCGCTAATATTTTCGCTAGAGCCTTTGAATATGTTATACTTAATGGTTGTTTTTAGTTAATCTTTGATTTGCACCGGTCATTTATTGACAAATCTTTGTTCATATTGATTTTCAGCAATGATGAATTTATACTTACAAAGTTAATCTGAAGCTTACTATCTATATGTAGTTTTACTTTTATTGATTAGATGGATTTTACCTTATACATTATACATTAGAGAGTTGGGGTAACACCTTTAGTAGAAAAGATGGTGGAAACTAGGCCTAGGTGGATTTGGCATGTAGAGAGAAGACTTGTGGATTTGGTAGTAAGGACAAATCATTAGAGATAGAGGAAGACCTAGAAAAACTATAAGAGAAACTATCAATAAAGATCTAGGGATTAATGAGTTGGATAGGAACATAGTATTTGATGGAACATTATGACGTTGTTTGATCCATGTATCTGATCCCACTTGGTGGGATAAGGCTCGGTTGTTGTTGTTGTTGTTTTTGTTGTGCCTTATACACATGGAGTTATGTTTTGTTTTTCTTCTTATAAATGACCTAGCATTTTTCTTGCATTATAATCACACACACCATCAATTTTGGCAGGCATGCTGATGTTTGTTTATTGTTTTTTCAAGAAAAAGAAAGGACACATACAAGAGTTCAAAATTTAGAGATATTAGTTTACAGTATCATCAAGAAAAACAAAGGAAAGCTACTTCTTAGAGTGTATAATGGTACAATCAGGAGATAAATAAGATAACGTCCATCAAATAATTATAAAGTTTTTTAATGGTTGCTAGTAGAAATCAGGGAGTGAAATTTAGATGTGATACTCCCTCTGGTCCTATTTATAAGAAACATTTGACTTGTTTGATTCATTGCATAAATGATGTATTTGGTCTATATTCTAGACAAGATACATTAATTGCAAAATGAATCTAAAAAGTCAACTTTTTCTTATAAATAAGACCGAATGGAGTATTCTATAGCTTGACCACTTCTTCCTTTCTATATGTTCACCAAAATTGTTCTAGGATTCTATTTTAAATTGTTTACTACTGACTATATTATTAACTAACGGAAATCAGTGGGTTTTCCGGGTATTGAATATCGGCGGTTCACTAACCTAACATATGGTTAAGTGCTCTGAGTGGTTTGGGGGGATTGATGACAAAAAAAAACAGTTGTTAGATAAGAACAATTATTAAGGTGAACCTTAACATCTATTTTCATGATTTTTTTTTTTTTATAAATTTATGATAAGCTTTTCAATTATATTGTATGCTGTCAATGGTGTGATGTGATGAAAATGGAACTTTAATGAAATCACCTGGCTAATGTTTTGTTTCTCCTCCTCTTTTGCAATTTTGAATATTGTGAGTAAATTCTTTATCACTTATGCCCCAATTAATACTGTTTATTGTTACTATTCCCATGTACTTGATTATATTTTTTGACTCCTTTTAATGAGAGATGTTAGTAGAAAGACTTGTTACTGAATGTCGTTACAGACATGTTAATTGTGCAACACTTTCAATGGATAGATACAATCTTGGATTAATATTTAGTGCATGACAATTGGAGGTTGAAGACAACATTTATTTTTTGATATAAATGAAATGTGTTATTGTTCCTCTATATGCATGGATGTGAGGCAGTTTGAATTGAAAAATAAATTGAATTTTGTCCTTTTGAAAAGCTGTTCTTTAACAAAACTTTCCTCACACCTGAGTTGTCATGCTCTTAAATCAATATGAATCTCTATAGCACTGCTTCTACTTGTGATACAAGAGGTGTTAGAGGATATACTAGGTTATGAAGTTATCAGTGAGCATTTCATACTGATTTGATTTTGTAATGTGGAAATCAAGTTTTTATGTTTGACATGTGTTCATTTTTCAAAATGCTTAGCAGTAGCAGCACACTGAGTTTTGCTTTTGTTTTATGGAATATCTCTTTGAAGGTTAAAAATTTGACAAGCAATATTCAGTTGATACTTGATTCGATGAGAAATTCAAATGTTGTGGATGTCCAGGTGAGTTTTCAATAGCATTGTGTCACTTTCATGTTATGCTAGCACATTCTGTACATATATCGCTACAATTCACTATATCTATCATATATTTGCTTATTTCTCTATGTTAACTTTGTTGCAGGGTGACAAGTTGAGGAGGCGTAATTGGATGGACTCTGCTAAAGTTCAAGCTGATTCTGGTTCGGTTTCACCAGTTGAATCAAGGGGCAATAGCTTCACTGCTGATTTTCAAACTATTACTTTGGATAAAATAACTAAAGATGAAGGCGAGTCTTCCCGTCAGCCTCAACTCACAAATGGTAGTGATGTTGCCAGTAACATCAATTAA
Protein sequence

>MS.gene64057.t1

MADQPPPSDDSPKAVVVSSSPKAVVVSSPLPAPVEKNSSTIASDGGNAGGSKKPAWNKQPLNGVVVEIGPVMGAESWPALSESAKIPGKLPPELSSSKITPVAAAADGSPSTSQGPIISHTPQRQGTSNTKSSSMANNNVPNRPRPMRRIGGSNIGPGPAQSSLSNPPTPPPLPPYPVYQLPPAVSYPNMVPSIPDSSPRDHHRNNNWDARPFVGGSSRRGHFGSHPRGDGSYHQNSYSSRRDHDRGNYANTRDAHAPQPRMPPRGILRHPPPSTAAFLGPQTIGPFPAPVAYPDFYYFPTVPLDPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYYFSDINLANDEFLKSNMDEEGWVPITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQGDKLRRRNWMDSAKVQADSGSVSPVESRGNSFTADFQTITLDKITKDEGESSRQPQLTNGSDVASNIN