AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64153


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64153.t1 MTR_7g099570 94.499 509 27 1 1 508 6 514 0.0 897
MS.gene64153.t1 MTR_7g099580 68.205 195 61 1 1 194 9 203 5.92e-86 270
MS.gene64153.t1 MTR_7g099580 78.723 47 10 0 419 465 238 284 5.81e-17 82.8
MS.gene64153.t1 MTR_1g069110 37.901 343 158 5 1 339 15 306 2.04e-58 201
MS.gene64153.t1 MTR_1g069110 50.000 128 60 2 381 508 236 359 5.37e-34 134
MS.gene64153.t1 MTR_7g099550 57.143 105 40 1 63 167 136 235 2.95e-29 116
MS.gene64153.t1 MTR_2g101320 25.231 432 247 10 32 461 134 491 1.45e-23 105
MS.gene64153.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 1.92e-21 98.6
MS.gene64153.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 2.65e-21 97.8
MS.gene64153.t1 MTR_7g021090 28.251 223 146 3 4 217 9 226 8.09e-20 92.4
MS.gene64153.t1 MTR_1g059930 30.526 190 118 4 4 184 12 196 3.65e-19 90.5
MS.gene64153.t1 MTR_8g072510 29.834 181 113 3 16 187 22 197 5.81e-18 87.0
MS.gene64153.t1 MTR_8g073260 28.571 203 131 5 7 200 14 211 6.52e-18 87.0
MS.gene64153.t1 MTR_8g068990 28.378 222 134 3 7 220 15 219 8.95e-18 86.7
MS.gene64153.t1 MTR_3g016210 29.834 181 113 4 16 187 22 197 1.07e-17 86.3
MS.gene64153.t1 MTR_8g062410 30.102 196 123 3 4 190 10 200 3.00e-17 84.7
MS.gene64153.t1 MTR_8g069880 31.579 190 116 4 7 187 10 194 3.48e-17 84.7
MS.gene64153.t1 MTR_8g039620 27.536 207 136 3 4 201 14 215 2.82e-16 81.6
MS.gene64153.t1 MTR_1g115575 28.082 292 177 10 4 287 135 401 4.79e-16 81.6
MS.gene64153.t1 MTR_7g451420 30.000 190 119 3 7 187 12 196 5.18e-16 79.7
MS.gene64153.t1 MTR_7g100390 30.542 203 125 5 2 199 82 273 1.03e-15 80.5
MS.gene64153.t1 MTR_8g467780 30.159 189 118 3 7 186 14 197 1.42e-14 76.6
MS.gene64153.t1 MTR_2g096190 29.902 204 127 5 2 200 99 291 2.49e-14 76.3
MS.gene64153.t1 MTR_3g105650 28.022 182 117 3 16 188 17 193 5.82e-14 74.3
MS.gene64153.t1 MTR_4g062100 28.063 253 155 7 4 250 74 305 7.76e-14 74.7
MS.gene64153.t1 MTR_1g032100 27.700 213 142 5 39 250 94 295 1.25e-13 73.9
MS.gene64153.t1 MTR_8g066670 24.436 266 177 6 16 264 1087 1345 4.69e-13 72.8
MS.gene64153.t1 MTR_8g105260 27.230 213 143 5 39 250 101 302 6.05e-13 71.6
MS.gene64153.t1 MTR_7g100430 26.275 255 162 6 39 289 161 393 8.82e-12 68.2
MS.gene64153.t1 MTR_7g117620 37.391 115 66 2 2 112 114 226 2.07e-11 67.0
MS.gene64153.t1 MTR_7g117620 25.359 209 117 5 37 214 82 282 9.12e-11 64.7
MS.gene64153.t1 MTR_7g087540 51.471 68 29 4 414 480 25 89 2.44e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64153.t1 AT4G10720 29.961 257 162 8 4 250 5 253 9.84e-21 95.1
MS.gene64153.t1 AT5G54610 32.569 218 134 5 11 220 12 224 1.25e-20 95.1
MS.gene64153.t1 AT4G10720 29.961 257 162 8 4 250 5 253 2.18e-20 94.4
MS.gene64153.t1 AT5G54620 30.876 217 136 4 2 209 3 214 4.55e-20 93.2
MS.gene64153.t1 AT1G14480 29.612 206 131 5 4 200 5 205 1.52e-17 85.9
MS.gene64153.t1 AT5G51160 30.612 196 116 6 65 250 42 227 4.27e-17 84.3
MS.gene64153.t1 AT5G15500 25.993 277 184 6 2 262 4 275 7.85e-17 83.6
MS.gene64153.t1 AT2G31820 32.843 204 118 6 4 202 193 382 9.72e-17 84.0
MS.gene64153.t1 AT1G14500 28.079 203 132 3 7 200 8 205 1.72e-16 82.4
MS.gene64153.t1 AT1G14480 31.707 164 103 3 4 163 5 163 2.72e-16 81.6
MS.gene64153.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene64153.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene64153.t1 AT3G12360 27.891 294 175 10 4 287 133 399 2.75e-13 73.2
MS.gene64153.t1 AT3G12360 27.891 294 175 10 4 287 121 387 2.89e-13 72.8
MS.gene64153.t1 AT5G60070 29.048 210 100 6 2 206 106 271 4.84e-13 72.0
MS.gene64153.t1 AT3G13950 39.655 116 65 3 397 508 4 118 9.04e-13 68.2
MS.gene64153.t1 AT5G50140 23.894 339 213 12 35 353 26 339 1.05e-12 70.9
MS.gene64153.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene64153.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene64153.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene64153.t1 AT1G05640 29.317 249 144 8 39 282 191 412 4.17e-12 69.3
MS.gene64153.t1 AT3G09550 25.597 293 187 9 4 289 154 422 1.52e-11 67.4
MS.gene64153.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4
MS.gene64153.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4

Find 113 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGGGTAACAATATTT+TGG 0.140494 7.4:-10780180 MS.gene64153:CDS
TCGCGAATCAAGCAAGTTTC+TGG 0.144507 7.4:+10780431 None:intergenic
TGCACTTATCAACTCCTTAA+TGG 0.167211 7.4:+10780355 None:intergenic
TCCAATAACCTTGGTTTATT+AGG 0.187112 7.4:+10779153 None:intergenic
ACCTAATAAACCAAGGTTAT+TGG 0.210805 7.4:-10779154 MS.gene64153:CDS
CTCTATGATGCATCATTAAA+AGG 0.232530 7.4:-10780701 MS.gene64153:CDS
ACCCGAATAGTTTCTGTTTC+CGG 0.272426 7.4:+10780329 None:intergenic
AACAACATGAACACAATAGA+TGG 0.289553 7.4:-10779205 MS.gene64153:CDS
AAAGACAAGAGAACAATTAA+TGG 0.291148 7.4:-10779123 MS.gene64153:CDS
TGCATCACTATGTGTGCTTT+TGG 0.293332 7.4:-10778904 MS.gene64153:CDS
GGTTACGCTTGTCCTGATTA+TGG 0.311723 7.4:-10779014 MS.gene64153:CDS
GTAAAGAAGCTATGTGTAAT+GGG 0.322353 7.4:+10780597 None:intergenic
GAAAATCCTCTGCCACACTA+TGG 0.322481 7.4:-10778493 MS.gene64153:CDS
TATCAAACGAGGACAAATTA+AGG 0.325515 7.4:-10780150 MS.gene64153:intron
AGCTCTTAAAGCTTCTGTTT+TGG 0.341636 7.4:+10779763 None:intergenic
TGCCGGAAACAGAAACTATT+CGG 0.348258 7.4:-10780331 MS.gene64153:CDS
CTAGAATTGTGTTCTGGGTT+AGG 0.351230 7.4:-10778668 MS.gene64153:CDS
GAAAACACACAAGTGCAAAA+TGG 0.355298 7.4:+10780280 None:intergenic
AAATAGCTAGAATTGTGTTC+TGG 0.368470 7.4:-10778674 MS.gene64153:intron
TTAGTCCACCGGGCGGTGTT+TGG 0.379011 7.4:-10779058 MS.gene64153:CDS
AAAATGAATTTAAGATAATC+TGG 0.381714 7.4:+10778948 None:intergenic
TAGTCCACCGGGCGGTGTTT+GGG 0.381761 7.4:-10779057 MS.gene64153:CDS
TTACACATAGCTTCTTTACT+TGG 0.383128 7.4:-10780593 MS.gene64153:CDS
TGGTGGTTGTGAAGGACTAT+TGG 0.387197 7.4:+10779397 None:intergenic
CTTCATCTAGCTTCGGCAAA+AGG 0.398211 7.4:-10780491 MS.gene64153:CDS
GTCCTCTCATTACAGCAAAA+TGG 0.410295 7.4:+10780387 None:intergenic
GAAACTCTACTTAGAATTAG+AGG 0.414613 7.4:+10780641 None:intergenic
GGTGGTTGTGAAGGACTATT+GGG 0.420600 7.4:+10779398 None:intergenic
AGGACGCGTAGGAACCATTA+AGG 0.421682 7.4:-10780369 MS.gene64153:CDS
AATAGCTAGAATTGTGTTCT+GGG 0.426330 7.4:-10778673 MS.gene64153:intron
TTCACATCAGCTGCTAAGTT+GGG 0.430939 7.4:+10780533 None:intergenic
AGTAAAGAAGCTATGTGTAA+TGG 0.433633 7.4:+10780596 None:intergenic
ATCGATGATTGTTGTGGTTG+TGG 0.434864 7.4:+10779491 None:intergenic
TTGTGTTCTGGGTTAGGTCT+AGG 0.438558 7.4:-10778662 MS.gene64153:CDS
TTTAAGAGCTTTATATATGT+TGG 0.440411 7.4:-10779750 MS.gene64153:CDS
CTGCAGTTGTAGGATATGTT+TGG 0.441485 7.4:-10778974 MS.gene64153:CDS
TGTAATGGGGTTTCAGAGAA+TGG 0.449861 7.4:+10780611 None:intergenic
GTTCACATCAGCTGCTAAGT+TGG 0.450012 7.4:+10780532 None:intergenic
ATCTAAGTTAAAAGTAGAAA+AGG 0.458916 7.4:-10778615 MS.gene64153:intron
TTGTGTGGTGATGGTGATTG+TGG 0.460725 7.4:+10779338 None:intergenic
AGTTGTAGAGGATGACTAAT+CGG 0.467947 7.4:+10779437 None:intergenic
TTGCCCTCTTCATCTAGCTT+CGG 0.469951 7.4:-10780498 MS.gene64153:CDS
TGTTGTTCATTAGCTATGCT+TGG 0.473040 7.4:+10779221 None:intergenic
GCCGGAAACAGAAACTATTC+GGG 0.478264 7.4:-10780330 MS.gene64153:CDS
GAAGCAGGAACTGCAGTTGT+AGG 0.479785 7.4:-10778984 MS.gene64153:CDS
TCATTAGCTATGCTTGGTGT+TGG 0.483018 7.4:+10779227 None:intergenic
TTGTGGATGTTGAGGCTCAT+TGG 0.485922 7.4:+10779355 None:intergenic
TTCATCTAGCTTCGGCAAAA+GGG 0.485961 7.4:-10780490 MS.gene64153:CDS
TCAGTCAGTAATTAGTCCAC+CGG 0.487845 7.4:-10779069 MS.gene64153:CDS
GTATGGCTAGCAAAATCTCT+TGG 0.489498 7.4:+10779719 None:intergenic
GAGGATGACTAATCGGTGAT+TGG 0.491854 7.4:+10779444 None:intergenic
TCAAAATGTGTTGAATTGTA+TGG 0.493536 7.4:+10779702 None:intergenic
GCTATGCTTGGTGTTGGTGA+AGG 0.497302 7.4:+10779233 None:intergenic
GGGTCGTCACTTGGTGAGAA+TGG 0.511325 7.4:+10779254 None:intergenic
AAAATCCTCTGCCACACTAT+GGG 0.517000 7.4:-10778492 MS.gene64153:CDS
GAAGGATTTGTTAGTTGTAG+AGG 0.529973 7.4:+10779425 None:intergenic
AACTGTCGAGGATCATTCCT+TGG 0.530579 7.4:+10779617 None:intergenic
GGAGTTGATAAGTGCAATGC+CGG 0.532038 7.4:-10780348 MS.gene64153:CDS
TGCTTCCCATAGTGTGGCAG+AGG 0.532654 7.4:+10778487 None:intergenic
GAACAACATTCACAAATCAA+TGG 0.538302 7.4:-10779590 MS.gene64153:CDS
TTGTGAGATGGTGGTTGTGA+AGG 0.538920 7.4:+10779389 None:intergenic
AGTGAGGGATTGTGAGATGG+TGG 0.541315 7.4:+10779380 None:intergenic
CTTGGTGAGAATGGTGGTGG+TGG 0.543098 7.4:+10779263 None:intergenic
TGGGAAGAAGATACAACAAA+AGG 0.543938 7.4:-10779038 MS.gene64153:CDS
CTCCTCTCATTGATTCAACA+AGG 0.545286 7.4:+10780231 None:intergenic
AACAGAAACTATTCGGGTGA+TGG 0.549369 7.4:-10780324 MS.gene64153:CDS
TCTTCTTCCCAAACACCGCC+CGG 0.555882 7.4:+10779050 None:intergenic
GCCACACTATGGGAAGCACT+TGG 0.556613 7.4:-10778482 MS.gene64153:CDS
AATGGTGGTGGTGGTTGTAG+AGG 0.556799 7.4:+10779272 None:intergenic
TTTGTCTTCTAAAGACAAAG+AGG 0.558670 7.4:-10780195 MS.gene64153:CDS
ATGAACACAATAGATGGGAC+AGG 0.562692 7.4:-10779199 MS.gene64153:CDS
GAAGGACTATTGGGTGGTGA+AGG 0.565122 7.4:+10779407 None:intergenic
TTGAGGCTCATTGGTTAGTG+AGG 0.568784 7.4:+10779364 None:intergenic
CTATGCTTGGTGTTGGTGAA+GGG 0.569653 7.4:+10779234 None:intergenic
TCCAAGTGCTTCCCATAGTG+TGG 0.571682 7.4:+10778481 None:intergenic
GTAGGATCATTGTGTGGTGA+TGG 0.571721 7.4:+10779329 None:intergenic
CAGTCAGTAATTAGTCCACC+GGG 0.572133 7.4:-10779068 MS.gene64153:CDS
TGAGGCTCATTGGTTAGTGA+GGG 0.573688 7.4:+10779365 None:intergenic
GGTTGTAGAGGATTGAGGCC+TGG 0.573875 7.4:+10779284 None:intergenic
TTGTCTTCTAAAGACAAAGA+GGG 0.575204 7.4:-10780194 MS.gene64153:CDS
TTAGATATTTGTGGAGGACG+AGG 0.576543 7.4:+10778632 None:intergenic
GCAGCTGATGTGAACTCAGA+AGG 0.582169 7.4:-10780524 MS.gene64153:CDS
GTTGGTGAAGGGTCGTCACT+TGG 0.585627 7.4:+10779245 None:intergenic
ATGGCTGAGATTGATGATCA+TGG 0.588724 7.4:-10780305 MS.gene64153:CDS
AAACTCTACTTAGAATTAGA+GGG 0.589124 7.4:+10780642 None:intergenic
GTGGTGGTTGTAGAGGATTG+AGG 0.597688 7.4:+10779279 None:intergenic
TCACTTGGTGAGAATGGTGG+TGG 0.599059 7.4:+10779260 None:intergenic
GATGGTGATTGTGGATGTTG+AGG 0.600949 7.4:+10779347 None:intergenic
TCATTTATCGATGATTGTTG+TGG 0.602451 7.4:+10779485 None:intergenic
TTTGCCGAAGCTAGATGAAG+AGG 0.604364 7.4:+10780494 None:intergenic
ATCCTTGTTGAATCAATGAG+AGG 0.608497 7.4:-10780233 MS.gene64153:CDS
ACAACATGAACACAATAGAT+GGG 0.609468 7.4:-10779204 MS.gene64153:CDS
TCTGGGTTAGGTCTAGGCGC+AGG 0.609783 7.4:-10778656 MS.gene64153:CDS
GAATGTGTAATTTCTTGTGT+AGG 0.616234 7.4:+10779311 None:intergenic
TTGCCGAAGCTAGATGAAGA+GGG 0.617908 7.4:+10780495 None:intergenic
GGTTGTGAAGGACTATTGGG+TGG 0.622829 7.4:+10779401 None:intergenic
GTTAGTGAGGGATTGTGAGA+TGG 0.623672 7.4:+10779377 None:intergenic
GAAGAAGATACAACAAAAGG+TGG 0.625546 7.4:-10779035 MS.gene64153:CDS
GCTGTAATGAGAGGACGCGT+AGG 0.625908 7.4:-10780380 MS.gene64153:CDS
TCGTCACTTGGTGAGAATGG+TGG 0.634283 7.4:+10779257 None:intergenic
TTTAACTTAGATATTTGTGG+AGG 0.636829 7.4:+10778626 None:intergenic
GATTGGACTAGAGTTACTTG+AGG 0.640890 7.4:+10779461 None:intergenic
AACAAATACCTAATAAACCA+AGG 0.645161 7.4:-10779161 MS.gene64153:CDS
TAAAGAAGCTATGTGTAATG+GGG 0.652798 7.4:+10780598 None:intergenic
GAAATTACACATTCATCACC+AGG 0.657014 7.4:-10779302 MS.gene64153:CDS
AAGATCATGTTAACTCACCA+AGG 0.659607 7.4:-10779634 MS.gene64153:CDS
TGTTGTTCTAGTAACTGTCG+AGG 0.660930 7.4:+10779605 None:intergenic
GATGATTGTTGTGGTTGTGG+AGG 0.661128 7.4:+10779494 None:intergenic
TCTTCCCAAACACCGCCCGG+TGG 0.662288 7.4:+10779053 None:intergenic
TCTTGTGTAGGATCATTGTG+TGG 0.698697 7.4:+10779323 None:intergenic
TGAACACAATAGATGGGACA+GGG 0.709494 7.4:-10779198 MS.gene64153:CDS
TTGGATTTAGCTATCAAACG+AGG 0.710414 7.4:-10780161 MS.gene64153:CDS
TCAGTAATTAGTCCACCGGG+CGG 0.788117 7.4:-10779065 MS.gene64153:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAGAAAACTACA+AGG - chr7.4:10779244-10779263 MS.gene64153:CDS 15.0%
!!! AAAATGAATTTAAGATAATC+TGG + chr7.4:10780227-10780246 None:intergenic 15.0%
!! ACTATAAACTTATTATGAAG+AGG + chr7.4:10780311-10780330 None:intergenic 20.0%
!! ATCCAATTATTCATATGAAA+AGG + chr7.4:10779302-10779321 None:intergenic 20.0%
!! ATCTAAGTTAAAAGTAGAAA+AGG - chr7.4:10780557-10780576 MS.gene64153:CDS 20.0%
!! ATTCTATAGAAAATGTGATT+AGG + chr7.4:10780413-10780432 None:intergenic 20.0%
!! TCATAATAAGTTTATAGTGT+GGG - chr7.4:10780313-10780332 MS.gene64153:CDS 20.0%
!! TTCATAATAAGTTTATAGTG+TGG - chr7.4:10780312-10780331 MS.gene64153:CDS 20.0%
!!! AACCTTTTCATATGAATAAT+TGG - chr7.4:10779297-10779316 MS.gene64153:CDS 20.0%
!!! ACTTTTAACTTAGATATTTG+TGG + chr7.4:10780552-10780571 None:intergenic 20.0%
!!! TTTAAGAGCTTTATATATGT+TGG - chr7.4:10779422-10779441 MS.gene64153:CDS 20.0%
!!! TTTCAACAACAGATAAATTT+TGG - chr7.4:10779053-10779072 MS.gene64153:CDS 20.0%
! AAACTCTACTTAGAATTAGA+GGG + chr7.4:10778533-10778552 None:intergenic 25.0%
! AAAGACAAGAGAACAATTAA+TGG - chr7.4:10780049-10780068 MS.gene64153:intron 25.0%
! AACAAATACCTAATAAACCA+AGG - chr7.4:10780011-10780030 MS.gene64153:intron 25.0%
! ATTCATATGAAAAGGTTTCA+AGG + chr7.4:10779294-10779313 None:intergenic 25.0%
! TCAAAATGTGTTGAATTGTA+TGG + chr7.4:10779473-10779492 None:intergenic 25.0%
! TTCATATGAAAAGGTTTCAA+GGG + chr7.4:10779293-10779312 None:intergenic 25.0%
! TTCTATAGAATTCGTGATTT+AGG - chr7.4:10780422-10780441 MS.gene64153:CDS 25.0%
!! TGTTTTCTATAATCATCTAG+AGG - chr7.4:10778908-10778927 MS.gene64153:CDS 25.0%
!! TTTAACTTAGATATTTGTGG+AGG + chr7.4:10780549-10780568 None:intergenic 25.0%
!! TTTTATCTATCCAATAACCT+TGG + chr7.4:10780031-10780050 None:intergenic 25.0%
AAATAGCTAGAATTGTGTTC+TGG - chr7.4:10780498-10780517 MS.gene64153:CDS 30.0%
AACAACATGAACACAATAGA+TGG - chr7.4:10779967-10779986 MS.gene64153:intron 30.0%
AAGCTTAAATTGATAGGAGT+TGG + chr7.4:10780632-10780651 None:intergenic 30.0%
AATAGCTAGAATTGTGTTCT+GGG - chr7.4:10780499-10780518 MS.gene64153:CDS 30.0%
ACAACATGAACACAATAGAT+GGG - chr7.4:10779968-10779987 MS.gene64153:intron 30.0%
ACCTAATAAACCAAGGTTAT+TGG - chr7.4:10780018-10780037 MS.gene64153:intron 30.0%
AGCTTAAATTGATAGGAGTT+GGG + chr7.4:10780631-10780650 None:intergenic 30.0%
AGTAAAGAAGCTATGTGTAA+TGG + chr7.4:10778579-10778598 None:intergenic 30.0%
CACATGAAGCTTAAATTGAT+AGG + chr7.4:10780638-10780657 None:intergenic 30.0%
CTCTATGATGCATCATTAAA+AGG - chr7.4:10778471-10778490 MS.gene64153:CDS 30.0%
GAAACTCTACTTAGAATTAG+AGG + chr7.4:10778534-10778553 None:intergenic 30.0%
GAACAACATTCACAAATCAA+TGG - chr7.4:10779582-10779601 MS.gene64153:CDS 30.0%
GAATGTGTAATTTCTTGTGT+AGG + chr7.4:10779864-10779883 None:intergenic 30.0%
GTAAAGAAGCTATGTGTAAT+GGG + chr7.4:10778578-10778597 None:intergenic 30.0%
GTTATATCTTGGTTGGAATT+TGG - chr7.4:10780444-10780463 MS.gene64153:CDS 30.0%
TAAAGAAGCTATGTGTAATG+GGG + chr7.4:10778577-10778596 None:intergenic 30.0%
TATCAAACGAGGACAAATTA+AGG - chr7.4:10779022-10779041 MS.gene64153:CDS 30.0%
TCATTTATCGATGATTGTTG+TGG + chr7.4:10779690-10779709 None:intergenic 30.0%
TCCAATAACCTTGGTTTATT+AGG + chr7.4:10780022-10780041 None:intergenic 30.0%
TTACACATAGCTTCTTTACT+TGG - chr7.4:10778579-10778598 MS.gene64153:intron 30.0%
! CAAAGAGGGTAACAATATTT+TGG - chr7.4:10778992-10779011 MS.gene64153:CDS 30.0%
! CTTTTAATGATGCATCATAG+AGG + chr7.4:10778473-10778492 None:intergenic 30.0%
! GATTTAGGTTATATCTTGGT+TGG - chr7.4:10780437-10780456 MS.gene64153:CDS 30.0%
! GCATATGCAAATGTAGTTTT+TGG + chr7.4:10780609-10780628 None:intergenic 30.0%
! TAAGTTTATAGTGTGGGTTT+TGG - chr7.4:10780319-10780338 MS.gene64153:CDS 30.0%
! TATGTTGCTTACATACATGT+GGG - chr7.4:10780370-10780389 MS.gene64153:CDS 30.0%
! TCGTGATTTAGGTTATATCT+TGG - chr7.4:10780433-10780452 MS.gene64153:CDS 30.0%
! TTAGAATTAGAGGGTCTTTT+TGG + chr7.4:10778524-10778543 None:intergenic 30.0%
! TTGTCTTCTAAAGACAAAGA+GGG - chr7.4:10778978-10778997 MS.gene64153:CDS 30.0%
! TTTGTCTTCTAAAGACAAAG+AGG - chr7.4:10778977-10778996 MS.gene64153:CDS 30.0%
!! TAAGCTTCATGTGTTGATTT+AGG - chr7.4:10780645-10780664 MS.gene64153:CDS 30.0%
AAGATCATGTTAACTCACCA+AGG - chr7.4:10779538-10779557 MS.gene64153:CDS 35.0%
AGTTGTAGAGGATGACTAAT+CGG + chr7.4:10779738-10779757 None:intergenic 35.0%
ATCCTTGTTGAATCAATGAG+AGG - chr7.4:10778939-10778958 MS.gene64153:CDS 35.0%
GAAAACACACAAGTGCAAAA+TGG + chr7.4:10778895-10778914 None:intergenic 35.0%
GAAATTACACATTCATCACC+AGG - chr7.4:10779870-10779889 MS.gene64153:intron 35.0%
GAAGAAGATACAACAAAAGG+TGG - chr7.4:10780137-10780156 MS.gene64153:intron 35.0%
GCTTCACAAAAACCATAATC+AGG + chr7.4:10780173-10780192 None:intergenic 35.0%
TGCACTTATCAACTCCTTAA+TGG + chr7.4:10778820-10778839 None:intergenic 35.0%
TGGGAAGAAGATACAACAAA+AGG - chr7.4:10780134-10780153 MS.gene64153:intron 35.0%
TGTTGTTCATTAGCTATGCT+TGG + chr7.4:10779954-10779973 None:intergenic 35.0%
TTCATGAAAGAGAGTCATGA+AGG + chr7.4:10780586-10780605 None:intergenic 35.0%
TTGGATTTAGCTATCAAACG+AGG - chr7.4:10779011-10779030 MS.gene64153:CDS 35.0%
! AGCTCTTAAAGCTTCTGTTT+TGG + chr7.4:10779412-10779431 None:intergenic 35.0%
! GATTATGGTTTTTGTGAAGC+AGG - chr7.4:10780173-10780192 MS.gene64153:CDS 35.0%
! GTATGTTGCTTACATACATG+TGG - chr7.4:10780369-10780388 MS.gene64153:CDS 35.0%
! TTTTGTGGAGGATCATTGTT+TGG + chr7.4:10779633-10779652 None:intergenic 35.0%
!! GAAGGATTTGTTAGTTGTAG+AGG + chr7.4:10779750-10779769 None:intergenic 35.0%
!! TCTTAAAGCTTCTGTTTTGG+AGG + chr7.4:10779409-10779428 None:intergenic 35.0%
!!! TGTGATGGTTGTTGATTTTG+TGG + chr7.4:10779648-10779667 None:intergenic 35.0%
AAAATCCTCTGCCACACTAT+GGG - chr7.4:10780680-10780699 MS.gene64153:CDS 40.0%
AACAGAAACTATTCGGGTGA+TGG - chr7.4:10778848-10778867 MS.gene64153:intron 40.0%
ACCCGAATAGTTTCTGTTTC+CGG + chr7.4:10778846-10778865 None:intergenic 40.0%
AGTCTATTGTGACAGACAGA+AGG - chr7.4:10779156-10779175 MS.gene64153:CDS 40.0%
ATCGATGATTGTTGTGGTTG+TGG + chr7.4:10779684-10779703 None:intergenic 40.0%
ATGAACACAATAGATGGGAC+AGG - chr7.4:10779973-10779992 MS.gene64153:intron 40.0%
CTGCAGTTGTAGGATATGTT+TGG - chr7.4:10780198-10780217 MS.gene64153:CDS 40.0%
CTTACATACATGTGGGCATT+GGG - chr7.4:10780377-10780396 MS.gene64153:CDS 40.0%
GTATGGCTAGCAAAATCTCT+TGG + chr7.4:10779456-10779475 None:intergenic 40.0%
GTCCTCTCATTACAGCAAAA+TGG + chr7.4:10778788-10778807 None:intergenic 40.0%
TCAGTCAGTAATTAGTCCAC+CGG - chr7.4:10780103-10780122 MS.gene64153:intron 40.0%
TCTTGTGTAGGATCATTGTG+TGG + chr7.4:10779852-10779871 None:intergenic 40.0%
TGAACACAATAGATGGGACA+GGG - chr7.4:10779974-10779993 MS.gene64153:intron 40.0%
TGCCGGAAACAGAAACTATT+CGG - chr7.4:10778841-10778860 MS.gene64153:intron 40.0%
TGTTGTTCTAGTAACTGTCG+AGG + chr7.4:10779570-10779589 None:intergenic 40.0%
TTAGATATTTGTGGAGGACG+AGG + chr7.4:10780543-10780562 None:intergenic 40.0%
TTCACATCAGCTGCTAAGTT+GGG + chr7.4:10778642-10778661 None:intergenic 40.0%
! ATGGCTGAGATTGATGATCA+TGG - chr7.4:10778867-10778886 MS.gene64153:intron 40.0%
! CTAGAATTGTGTTCTGGGTT+AGG - chr7.4:10780504-10780523 MS.gene64153:CDS 40.0%
! GATTGGACTAGAGTTACTTG+AGG + chr7.4:10779714-10779733 None:intergenic 40.0%
! GGAGGATCAATGTTTTGTGA+TGG + chr7.4:10779663-10779682 None:intergenic 40.0%
! TGCATCACTATGTGTGCTTT+TGG - chr7.4:10780268-10780287 MS.gene64153:CDS 40.0%
! TGTAATGGGGTTTCAGAGAA+TGG + chr7.4:10778564-10778583 None:intergenic 40.0%
! TTCATCTAGCTTCGGCAAAA+GGG - chr7.4:10778682-10778701 MS.gene64153:intron 40.0%
!! CTCCATTTTGCTGTAATGAG+AGG - chr7.4:10778783-10778802 MS.gene64153:intron 40.0%
!! CTCCTCTCATTGATTCAACA+AGG + chr7.4:10778944-10778963 None:intergenic 40.0%
!! GTTTATAGTGTGGGTTTTGG+CGG - chr7.4:10780322-10780341 MS.gene64153:CDS 40.0%
!! TCATTAGCTATGCTTGGTGT+TGG + chr7.4:10779948-10779967 None:intergenic 40.0%
!!! GATGGTTGTTGATTTTGTGG+AGG + chr7.4:10779645-10779664 None:intergenic 40.0%
AACTGTCGAGGATCATTCCT+TGG + chr7.4:10779558-10779577 None:intergenic 45.0%
CAGTCAGTAATTAGTCCACC+GGG - chr7.4:10780104-10780123 MS.gene64153:intron 45.0%
GAAAATCCTCTGCCACACTA+TGG - chr7.4:10780679-10780698 MS.gene64153:CDS 45.0%
GAGGATGACTAATCGGTGAT+TGG + chr7.4:10779731-10779750 None:intergenic 45.0%
GATGATTGTTGTGGTTGTGG+AGG + chr7.4:10779681-10779700 None:intergenic 45.0%
GATGGTGATTGTGGATGTTG+AGG + chr7.4:10779828-10779847 None:intergenic 45.0%
GCCGGAAACAGAAACTATTC+GGG - chr7.4:10778842-10778861 MS.gene64153:intron 45.0%
GCTTACATACATGTGGGCAT+TGG - chr7.4:10780376-10780395 MS.gene64153:CDS 45.0%
GGTGGTTGTGAAGGACTATT+GGG + chr7.4:10779777-10779796 None:intergenic 45.0%
GGTTACGCTTGTCCTGATTA+TGG - chr7.4:10780158-10780177 MS.gene64153:CDS 45.0%
GTAGGATCATTGTGTGGTGA+TGG + chr7.4:10779846-10779865 None:intergenic 45.0%
GTTAGTGAGGGATTGTGAGA+TGG + chr7.4:10779798-10779817 None:intergenic 45.0%
GTTCACATCAGCTGCTAAGT+TGG + chr7.4:10778643-10778662 None:intergenic 45.0%
TCGCGAATCAAGCAAGTTTC+TGG + chr7.4:10778744-10778763 None:intergenic 45.0%
TGGTGGTTGTGAAGGACTAT+TGG + chr7.4:10779778-10779797 None:intergenic 45.0%
TTGCCGAAGCTAGATGAAGA+GGG + chr7.4:10778680-10778699 None:intergenic 45.0%
TTGTGGATGTTGAGGCTCAT+TGG + chr7.4:10779820-10779839 None:intergenic 45.0%
TTTGCCGAAGCTAGATGAAG+AGG + chr7.4:10778681-10778700 None:intergenic 45.0%
! CTTCATCTAGCTTCGGCAAA+AGG - chr7.4:10778681-10778700 MS.gene64153:intron 45.0%
! GTGGCAGAGGATTTTCAGAA+AGG + chr7.4:10780675-10780694 None:intergenic 45.0%
! TGAGGCTCATTGGTTAGTGA+GGG + chr7.4:10779810-10779829 None:intergenic 45.0%
! TTGAGGCTCATTGGTTAGTG+AGG + chr7.4:10779811-10779830 None:intergenic 45.0%
! TTGCCCTCTTCATCTAGCTT+CGG - chr7.4:10778674-10778693 MS.gene64153:intron 45.0%
! TTGTGAGATGGTGGTTGTGA+AGG + chr7.4:10779786-10779805 None:intergenic 45.0%
! TTGTGTTCTGGGTTAGGTCT+AGG - chr7.4:10780510-10780529 MS.gene64153:CDS 45.0%
!! CTATGCTTGGTGTTGGTGAA+GGG + chr7.4:10779941-10779960 None:intergenic 45.0%
!! GGAGTTGATAAGTGCAATGC+CGG - chr7.4:10778824-10778843 MS.gene64153:intron 45.0%
!! TTGTGTGGTGATGGTGATTG+TGG + chr7.4:10779837-10779856 None:intergenic 45.0%
!!! GTGCTTTTGGTTCTCGTAAG+TGG - chr7.4:10780281-10780300 MS.gene64153:CDS 45.0%
AGGACGCGTAGGAACCATTA+AGG - chr7.4:10778803-10778822 MS.gene64153:intron 50.0%
AGTGAGGGATTGTGAGATGG+TGG + chr7.4:10779795-10779814 None:intergenic 50.0%
GAAGCAGGAACTGCAGTTGT+AGG - chr7.4:10780188-10780207 MS.gene64153:CDS 50.0%
GAAGGACTATTGGGTGGTGA+AGG + chr7.4:10779768-10779787 None:intergenic 50.0%
GCAGCTGATGTGAACTCAGA+AGG - chr7.4:10778648-10778667 MS.gene64153:CDS 50.0%
GGTTGTGAAGGACTATTGGG+TGG + chr7.4:10779774-10779793 None:intergenic 50.0%
GTGGTGGTTGTAGAGGATTG+AGG + chr7.4:10779896-10779915 None:intergenic 50.0%
TCAGTAATTAGTCCACCGGG+CGG - chr7.4:10780107-10780126 MS.gene64153:intron 50.0%
TCCAAGTGCTTCCCATAGTG+TGG + chr7.4:10780694-10780713 None:intergenic 50.0%
! TCACTTGGTGAGAATGGTGG+TGG + chr7.4:10779915-10779934 None:intergenic 50.0%
! TCGTCACTTGGTGAGAATGG+TGG + chr7.4:10779918-10779937 None:intergenic 50.0%
!! AATGGTGGTGGTGGTTGTAG+AGG + chr7.4:10779903-10779922 None:intergenic 50.0%
!! GCTATGCTTGGTGTTGGTGA+AGG + chr7.4:10779942-10779961 None:intergenic 50.0%
GCTGTAATGAGAGGACGCGT+AGG - chr7.4:10778792-10778811 MS.gene64153:intron 55.0%
GGTTGTAGAGGATTGAGGCC+TGG + chr7.4:10779891-10779910 None:intergenic 55.0%
TCTTCTTCCCAAACACCGCC+CGG + chr7.4:10780125-10780144 None:intergenic 55.0%
TGCTTCCCATAGTGTGGCAG+AGG + chr7.4:10780688-10780707 None:intergenic 55.0%
! GGGTCGTCACTTGGTGAGAA+TGG + chr7.4:10779921-10779940 None:intergenic 55.0%
! GTTGGTGAAGGGTCGTCACT+TGG + chr7.4:10779930-10779949 None:intergenic 55.0%
!! CTTGGTGAGAATGGTGGTGG+TGG + chr7.4:10779912-10779931 None:intergenic 55.0%
!! GCCACACTATGGGAAGCACT+TGG - chr7.4:10780690-10780709 MS.gene64153:CDS 55.0%
TAGTCCACCGGGCGGTGTTT+GGG - chr7.4:10780115-10780134 MS.gene64153:intron 60.0%
TTAGTCCACCGGGCGGTGTT+TGG - chr7.4:10780114-10780133 MS.gene64153:intron 60.0%
! TCTGGGTTAGGTCTAGGCGC+AGG - chr7.4:10780516-10780535 MS.gene64153:CDS 60.0%
TCTTCCCAAACACCGCCCGG+TGG + chr7.4:10780122-10780141 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 10778462 10780732 10778462 ID=MS.gene64153
chr7.4 mRNA 10778462 10780732 10778462 ID=MS.gene64153.t1;Parent=MS.gene64153
chr7.4 exon 10780151 10780732 10780151 ID=MS.gene64153.t1.exon1;Parent=MS.gene64153.t1
chr7.4 CDS 10780151 10780732 10780151 ID=cds.MS.gene64153.t1;Parent=MS.gene64153.t1
chr7.4 exon 10778899 10779837 10778899 ID=MS.gene64153.t1.exon2;Parent=MS.gene64153.t1
chr7.4 CDS 10778899 10779837 10778899 ID=cds.MS.gene64153.t1;Parent=MS.gene64153.t1
chr7.4 exon 10778616 10778690 10778616 ID=MS.gene64153.t1.exon3;Parent=MS.gene64153.t1
chr7.4 CDS 10778616 10778690 10778616 ID=cds.MS.gene64153.t1;Parent=MS.gene64153.t1
chr7.4 exon 10778462 10778527 10778462 ID=MS.gene64153.t1.exon4;Parent=MS.gene64153.t1
chr7.4 CDS 10778462 10778527 10778462 ID=cds.MS.gene64153.t1;Parent=MS.gene64153.t1
Gene Sequence

>MS.gene64153

ATGAGAAACCTCTATGATGCATCATTAAAAGGATGTGTGATTAGCTTAAAAGCACTTATCCAAAAAGACCCTCTAATTCTAAGTAGAGTTTCACTCTCTCCATTCTCTGAAACCCCATTACACATAGCTTCTTTACTTGGACATTTAGAATTAAGTCAAATTCTTCTTGACATAAATCCCAACTTAGCAGCTGATGTGAACTCAGAAGGACATTGCCCTCTTCATCTAGCTTCGGCAAAAGGGCACATTGAAATAGTGAAAGCTTTGTTGTTGACAGATCCAGAAACTTGCTTGATTCGCGACAAAGATGACAAACTTTCTCTCCATTTTGCTGTAATGAGAGGACGCGTAGGAACCATTAAGGAGTTGATAAGTGCAATGCCGGAAACAGAAACTATTCGGGTGATGGCTGAGATTGATGATCATGGTTCCATTTTGCACTTGTGTGTTTTCTATAATCATCTAGAGGCATTGAAAATCCTTGTTGAATCAATGAGAGGAGACATTGATCAATTTTTGTCTTCTAAAGACAAAGAGGGTAACAATATTTTGGATTTAGCTATCAAACGAGGACAAATTAAGGTAATGTTTTTTCAACAACAGATAAATTTTGGATTTGCTCACTTTCTAAAAATATTTTCAATTTACAATTTAAAAATCTGAATTCATTTTAAACTGCTAACAATAAGATGAAAGTCTATTGTGACAGACAGAAGGTGAAAGACTTTTTAAGTAGAATACATTTTTAAAAATAATGAAAACAATGTTTTCACATTTTCAAAAATTATAAAAGAAAACTACAAGGAAAATACTGAATCTTGTTTTGAGCCCTTGAAACCTTTTCATATGAATAATTGGATTAAACATTAGTAACAACTTTTATATAACTTTGCAGATCATAAAGTACTTGCTCTCACTATCTGAAATGAGTGAGACAATAAATACCTCCAAAACAGAAGCTTTAAGAGCTTTATATATGTTGGAGCATAGTCCAAGAGATTTTGCTAGCCATACAATTCAACACATTTTGACTGAAGAAAGAGCTCAAACATCTACAAATATAGTTATTGCTCAACAAGATCATGTTAACTCACCAAGGAATGATCCTCGACAGTTACTAGAACAACATTCACAAATCAATGGTCATGAACAATCACAAACTTCATCACCAAACAATGATCCTCCACAAAATCAACAACCATCACAAAACATTGATCCTCCACAACCACAACAATCATCGATAAATGATCCTCAAGTAACTCTAGTCCAATCACCGATTAGTCATCCTCTACAACTAACAAATCCTTCACCACCCAATAGTCCTTCACAACCACCATCTCACAATCCCTCACTAACCAATGAGCCTCAACATCCACAATCACCATCACCACACAATGATCCTACACAAGAAATTACACATTCATCACCAGGCCTCAATCCTCTACAACCACCACCACCATTCTCACCAAGTGACGACCCTTCACCAACACCAAGCATAGCTAATGAACAACATGAACACAATAGATGGGACAGGGTTGAGAGTTTCTGCAACAAATACCTAATAAACCAAGGTTATTGGATAGATAAAAAGACAAGAGAACAATTAATGGTAGCAGCAACTGTGATTGCAACTATGACTTTTCAGTCAGTAATTAGTCCACCGGGCGGTGTTTGGGAAGAAGATACAACAAAAGGTGGTTACGCTTGTCCTGATTATGGTTTTTGTGAAGCAGGAACTGCAGTTGTAGGATATGTTTGGTCACCAGATTATCTTAAATTCATTTTCTTCAACTCTGCTTCTTTCTTTGCATCACTATGTGTGCTTTTGGTTCTCGTAAGTGGATTTCCTCTTCATAATAAGTTTATAGTGTGGGTTTTGGCGGTTTTGATGATAGTTGCAATCACATGTATGTTGCTTACATACATGTGGGCATTGGGATTAATTAGTCCTAATCACATTTTCTATAGAATTCGTGATTTAGGTTATATCTTGGTTGGAATTTGGTCTTTCTTACTTTTTGTTGTTTGTTTGATTCAAATAGCTAGAATTGTGTTCTGGGTTAGGTCTAGGCGCAGGTCCTCGTCCTCCACAAATATCTAAGTTAAAAGTAGAAAAGGTTGCCTTCATGACTCTCTTTCATGAACCAAAAACTACATTTGCATATGCCCAACTCCTATCAATTTAAGCTTCATGTGTTGATTTAGGATATCCTTTCTGAAAATCCTCTGCCACACTATGGGAAGCACTTGGAGAAGTGCGATGATTCATAA

Protein sequence

>MS.gene64153.t1

MRNLYDASLKGCVISLKALIQKDPLILSRVSLSPFSETPLHIASLLGHLELSQILLDINPNLAADVNSEGHCPLHLASAKGHIEIVKALLLTDPETCLIRDKDDKLSLHFAVMRGRVGTIKELISAMPETETIRVMAEIDDHGSILHLCVFYNHLEALKILVESMRGDIDQFLSSKDKEGNNILDLAIKRGQIKIIKYLLSLSEMSETINTSKTEALRALYMLEHSPRDFASHTIQHILTEERAQTSTNIVIAQQDHVNSPRNDPRQLLEQHSQINGHEQSQTSSPNNDPPQNQQPSQNIDPPQPQQSSINDPQVTLVQSPISHPLQLTNPSPPNSPSQPPSHNPSLTNEPQHPQSPSPHNDPTQEITHSSPGLNPLQPPPPFSPSDDPSPTPSIANEQHEHNRWDRVESFCNKYLINQGYWIDKKTREQLMVAATVIATMTFQSVISPPGGVWEEDTTKGGYACPDYGFCEAGTAVVGYVWSPDYLKFIFFNSASFFASLCVLLVLLELCSGLGLGAGPRPPQISKLKVEKDILSENPLPHYGKHLEKCDDS