AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64189

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64189.t1 MTR_1g023760 96.530 778 27 0 1 778 1 778 0.0 1533
MS.gene64189.t1 MTR_8g466020 73.485 132 25 1 48 179 19 140 1.24e-53 187
MS.gene64189.t1 MTR_7g007170 79.592 98 20 0 84 181 11 108 3.34e-46 164
MS.gene64189.t1 MTR_1g023925 44.706 170 20 3 557 724 1 98 7.03e-28 108
MS.gene64189.t1 MTR_5g038620 37.313 134 83 1 126 259 121 253 5.02e-17 86.3
MS.gene64189.t1 MTR_4g108140 35.714 140 84 2 124 259 99 236 2.76e-16 83.2
MS.gene64189.t1 MTR_4g108140 35.714 140 84 2 124 259 100 237 3.23e-16 83.2
MS.gene64189.t1 MTR_3g091560 36.047 172 66 6 124 261 112 273 4.45e-15 79.0
MS.gene64189.t1 MTR_4g050480 32.121 165 82 4 124 262 97 257 3.29e-14 76.3
MS.gene64189.t1 MTR_4g050480 32.121 165 82 4 124 262 96 256 3.54e-14 75.9
MS.gene64189.t1 MTR_8g024540 59.649 57 23 0 126 182 129 185 4.47e-14 76.3
MS.gene64189.t1 MTR_0019s0070 33.333 156 88 7 107 260 106 247 1.30e-12 71.2
MS.gene64189.t1 MTR_8g014580 49.254 67 34 0 126 192 128 194 2.44e-12 70.1
MS.gene64189.t1 MTR_1g101330 28.631 241 143 8 30 260 25 246 2.47e-12 70.1
MS.gene64189.t1 MTR_1g041430 56.604 53 23 0 124 176 111 163 4.33e-12 69.3
MS.gene64189.t1 MTR_7g114700 50.769 65 32 0 124 188 135 199 6.07e-12 68.9
MS.gene64189.t1 MTR_1g095740 28.834 163 90 3 124 260 141 303 1.23e-11 68.2
MS.gene64189.t1 MTR_1g007920 56.364 55 24 0 121 175 94 148 2.16e-11 67.4
MS.gene64189.t1 MTR_0047s0040 43.210 81 44 1 117 197 94 172 2.47e-11 67.0
MS.gene64189.t1 MTR_1g007920 56.364 55 24 0 121 175 119 173 2.81e-11 67.0
MS.gene64189.t1 MTR_1g066800 28.302 159 92 2 124 260 116 274 4.48e-11 66.2
MS.gene64189.t1 MTR_1g066800 28.302 159 92 2 124 260 121 279 4.95e-11 66.2
MS.gene64189.t1 MTR_1g103070 44.444 72 39 1 124 195 136 206 5.84e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64189.t1 AT1G19870 36.895 702 285 28 113 773 21 605 1.95e-95 310
MS.gene64189.t1 AT1G19870 36.895 702 285 28 113 773 204 788 1.89e-93 310
MS.gene64189.t1 AT1G18840 36.364 176 94 6 91 259 81 245 5.98e-22 101
MS.gene64189.t1 AT1G18840 36.364 176 94 6 91 259 81 245 5.98e-22 101
MS.gene64189.t1 AT1G18840 36.364 176 94 6 91 259 81 245 5.98e-22 101
MS.gene64189.t1 AT1G74690 37.838 148 69 3 124 259 113 249 7.42e-21 97.8
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.03e-20 97.8
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.03e-20 97.8
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.03e-20 97.8
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.36e-20 97.1
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.36e-20 97.1
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.36e-20 97.1
MS.gene64189.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.49e-20 97.1
MS.gene64189.t1 AT5G03040 29.630 162 87 4 124 260 115 274 4.41e-15 79.0
MS.gene64189.t1 AT5G03040 29.630 162 87 4 124 260 115 274 4.41e-15 79.0
MS.gene64189.t1 AT5G03040 29.630 162 87 4 124 260 115 274 4.41e-15 79.0
MS.gene64189.t1 AT3G49260 51.471 68 33 0 124 191 120 187 6.86e-15 78.6
MS.gene64189.t1 AT3G49260 51.471 68 33 0 124 191 120 187 6.86e-15 78.6
MS.gene64189.t1 AT3G49260 51.471 68 33 0 124 191 120 187 6.86e-15 78.6
MS.gene64189.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.02e-15 78.6
MS.gene64189.t1 AT4G14750 31.111 225 118 6 1 214 1 199 1.20e-14 77.0
MS.gene64189.t1 AT2G02790 28.497 193 134 2 67 259 53 241 1.65e-14 77.8
MS.gene64189.t1 AT2G02790 28.497 193 134 2 67 259 53 241 1.65e-14 77.8
MS.gene64189.t1 AT3G52290 31.875 160 84 4 124 260 108 265 1.66e-14 77.0
MS.gene64189.t1 AT2G02790 28.804 184 130 1 76 259 59 241 1.87e-14 77.8
MS.gene64189.t1 AT1G01110 55.072 69 30 1 126 194 123 190 2.47e-14 77.0
MS.gene64189.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.21e-14 75.9
MS.gene64189.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.56e-14 75.9
MS.gene64189.t1 AT4G00820 53.623 69 31 1 126 194 134 201 9.07e-14 75.1
MS.gene64189.t1 AT3G51380 53.968 63 29 0 124 186 37 99 4.44e-13 66.6
MS.gene64189.t1 AT4G10640 35.260 173 76 6 19 189 27 165 4.58e-13 72.4
MS.gene64189.t1 AT3G22190 30.435 161 88 3 126 262 90 250 9.51e-13 71.6
MS.gene64189.t1 AT3G22190 30.435 161 88 3 126 262 90 250 9.51e-13 71.6
MS.gene64189.t1 AT3G22190 30.435 161 88 3 126 262 90 250 9.51e-13 71.6
MS.gene64189.t1 AT3G22190 30.435 161 88 3 126 262 90 250 9.51e-13 71.6
MS.gene64189.t1 AT1G72670 30.097 206 96 7 96 260 57 255 1.44e-12 70.9
MS.gene64189.t1 AT2G26180 57.692 52 22 0 124 175 84 135 2.57e-11 67.0
MS.gene64189.t1 AT3G09710 30.409 171 92 7 124 269 108 276 4.41e-11 66.2
MS.gene64189.t1 AT5G13460 32.164 171 99 6 107 260 92 262 4.53e-11 66.2

Find 158 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1.3:-1460337 MS.gene64189:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1.3:+1458047 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1.3:-1459105 MS.gene64189:intron
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1.3:+1457335 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1.3:+1458004 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1.3:+1457701 None:intergenic
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1.3:+1457715 None:intergenic
GTTTCGGTGACAATTGTTTC+AGG 0.269080 1.3:+1459179 None:intergenic
TATCCCTTCTACTAAATCTT+TGG 0.290554 1.3:+1457619 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1.3:-1458053 MS.gene64189:CDS
GACCACATCTTCAGCAAATA+AGG 0.295588 1.3:-1459327 MS.gene64189:CDS
GATCAATTAGAAACTGTTAA+TGG 0.296217 1.3:-1457521 MS.gene64189:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1.3:-1458562 MS.gene64189:intron
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1.3:-1457846 MS.gene64189:CDS
ATTGCTACTACTATTATCTT+TGG 0.306041 1.3:+1457040 None:intergenic
GACTGTTCGGTCGTACAAAT+TGG 0.313335 1.3:+1458322 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1.3:-1457218 MS.gene64189:CDS
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1.3:+1457065 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1.3:-1457164 MS.gene64189:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1.3:+1458403 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1.3:+1457457 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1.3:-1459113 MS.gene64189:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1.3:+1459131 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1.3:-1456850 MS.gene64189:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1.3:-1457845 MS.gene64189:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1.3:-1457543 MS.gene64189:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1.3:+1459260 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1.3:+1457007 None:intergenic
TGCACATCTGGACTTGATCT+TGG 0.387615 1.3:+1456951 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1.3:-1457098 MS.gene64189:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1.3:-1457623 MS.gene64189:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1.3:-1458371 MS.gene64189:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1.3:-1457321 MS.gene64189:CDS
AGAGGAATTTGCATTTATCT+TGG 0.400449 1.3:+1456974 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1.3:+1456939 None:intergenic
GAGGGAAAGAAAATTACATT+TGG 0.405918 1.3:-1457923 MS.gene64189:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1.3:-1456892 MS.gene64189:CDS
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1.3:+1457059 None:intergenic
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1.3:+1457116 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1.3:-1458137 MS.gene64189:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1.3:+1458291 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1.3:-1458936 MS.gene64189:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.423888 1.3:+1458309 None:intergenic
CCAGCTCTGCAGGGCACAAA+AGG 0.424587 1.3:-1456840 MS.gene64189:CDS
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1.3:-1456900 MS.gene64189:CDS
TTCACCGAAACCTGACTTGA+AGG 0.429554 1.3:+1457317 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1.3:-1457327 MS.gene64189:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1.3:+1457356 None:intergenic
ACAAAAGGCAATGGTTCATC+TGG 0.439599 1.3:-1456825 MS.gene64189:intron
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1.3:+1457467 None:intergenic
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1.3:+1457936 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1.3:-1457657 MS.gene64189:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1.3:+1459163 None:intergenic
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1.3:+1456980 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1.3:-1457916 MS.gene64189:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1.3:-1458402 MS.gene64189:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1.3:-1458396 MS.gene64189:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1.3:-1457287 MS.gene64189:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1.3:+1458225 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1.3:+1457221 None:intergenic
TAAATTAGAAGTCGGAGTAT+TGG 0.472015 1.3:+1457559 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1.3:+1457536 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1.3:-1458944 MS.gene64189:CDS
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1.3:-1457375 MS.gene64189:CDS
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1.3:+1457656 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1.3:-1457590 MS.gene64189:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1.3:+1457175 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1.3:-1458415 MS.gene64189:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1.3:-1459126 MS.gene64189:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1.3:+1457006 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1.3:-1460317 MS.gene64189:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1.3:+1456896 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1.3:+1457058 None:intergenic
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1.3:-1457119 MS.gene64189:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1.3:-1458384 MS.gene64189:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1.3:+1457044 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1.3:+1458863 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1.3:+1458207 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1.3:+1458250 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1.3:-1459168 MS.gene64189:CDS
GAGGATTGAAAACTAATACT+TGG 0.509672 1.3:+1459290 None:intergenic
TCATCACTTTCTTGATTCTG+AGG 0.511188 1.3:+1457995 None:intergenic
TAGCACTCATGCATCTCAAT+CGG 0.515881 1.3:-1458284 MS.gene64189:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1.3:-1457819 MS.gene64189:CDS
AATATCCTCTAATTGAAGCC+TGG 0.517071 1.3:+1459108 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1.3:+1458217 None:intergenic
ATCAGCATTTCTGGAAGGAT+AGG 0.521792 1.3:+1457724 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1.3:+1457167 None:intergenic
AATAAATGATAACTTGGAAG+AGG 0.528936 1.3:-1458131 MS.gene64189:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1.3:-1459409 MS.gene64189:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1.3:+1458424 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1.3:-1457713 MS.gene64189:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1.3:+1457551 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1.3:-1458925 MS.gene64189:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1.3:-1457254 MS.gene64189:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1.3:+1457880 None:intergenic
CTCCTTATTTGCTGAAGATG+TGG 0.543734 1.3:+1459325 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1.3:-1458392 MS.gene64189:CDS
ACACACCGAGACTGTTCTGC+AGG 0.546146 1.3:-1457405 MS.gene64189:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1.3:+1458066 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1.3:+1458069 None:intergenic
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1.3:+1457688 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1.3:-1457344 MS.gene64189:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1.3:+1458186 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1.3:+1458211 None:intergenic
AGATCACCATGTTGTTTCTG+AGG 0.564237 1.3:-1460282 MS.gene64189:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1.3:-1458952 MS.gene64189:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569713 1.3:+1457725 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1.3:+1456891 None:intergenic
GATTGAGCAGCAATAAATGA+GGG 0.573179 1.3:+1457881 None:intergenic
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1.3:-1458034 MS.gene64189:CDS
GAAATCCTGCAGAACAGTCT+CGG 0.578678 1.3:+1457400 None:intergenic
TTAATCACATGCGGTGGTGG+TGG 0.579067 1.3:-1460314 MS.gene64189:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1.3:-1456909 MS.gene64189:CDS
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1.3:-1457132 MS.gene64189:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1.3:-1458595 MS.gene64189:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1.3:+1457719 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1.3:-1456891 MS.gene64189:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1.3:+1457943 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1.3:+1458419 None:intergenic
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1.3:-1458844 MS.gene64189:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1.3:-1457155 MS.gene64189:CDS
GTGACTCAACAGATACATCC+TGG 0.600459 1.3:+1457801 None:intergenic
CTGCAGGGCACAAAAGGCAA+TGG 0.601151 1.3:-1456834 MS.gene64189:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1.3:-1458113 MS.gene64189:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1.3:+1456864 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1.3:-1457268 MS.gene64189:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1.3:-1460323 MS.gene64189:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1.3:+1459134 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1.3:-1457622 MS.gene64189:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1.3:-1458951 MS.gene64189:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1.3:+1457495 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1.3:+1457496 None:intergenic
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1.3:+1456956 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1.3:+1458149 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1.3:-1456849 MS.gene64189:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1.3:-1457512 MS.gene64189:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1.3:-1457374 MS.gene64189:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1.3:-1457841 MS.gene64189:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1.3:-1456997 MS.gene64189:CDS
AATTTGTACGACCGAACAGT+CGG 0.638857 1.3:-1458320 MS.gene64189:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1.3:-1458224 MS.gene64189:CDS
AGGTATCTCTGAGCAAACAT+CGG 0.644156 1.3:+1459199 None:intergenic
CTCAGACCAACTAGAGACCG+AGG 0.645334 1.3:-1457942 MS.gene64189:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1.3:+1458171 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1.3:-1457267 MS.gene64189:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1.3:-1457833 MS.gene64189:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1.3:+1457818 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1.3:-1459165 MS.gene64189:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1.3:-1460320 MS.gene64189:CDS
TATCTCTGAGCAAACATCGG+AGG 0.672622 1.3:+1459202 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1.3:-1457200 MS.gene64189:CDS
AACAACATTAGGCTCAGCTG+AGG 0.679085 1.3:+1459271 None:intergenic
TCAGACCAACTAGAGACCGA+GGG 0.692845 1.3:-1457941 MS.gene64189:CDS
GATTCACCTCAGAAACAACA+TGG 0.720891 1.3:+1460276 None:intergenic
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1.3:+1457008 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1.3:+1459212 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1.3:-1459413 MS.gene64189:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1.3:1456642-1456661 MS.gene64189:intron 10.0%
!! ATATTCTTTGGTTATAAATA+AGG + chr1.3:1460238-1460257 None:intergenic 15.0%
!! TTCATAATTGAATAGTTATA+AGG - chr1.3:1456684-1456703 MS.gene64189:intron 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1.3:1457983-1458002 None:intergenic 15.0%
!!! TCAATTTTTTGGTATATAAT+CGG + chr1.3:1460054-1460073 None:intergenic 15.0%
!! AAGTATGTCATTATATTCTT+TGG + chr1.3:1460250-1460269 None:intergenic 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1.3:1457712-1457731 None:intergenic 20.0%
!! CAAAGATCACAAAAAAAAAA+AGG + chr1.3:1456764-1456783 None:intergenic 20.0%
!! CATTATATAGACAGATATTA+TGG - chr1.3:1460126-1460145 MS.gene64189:intron 20.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1.3:1457670-1457689 MS.gene64189:CDS 20.0%
!! TTCTCTAATAAATGATAACT+TGG - chr1.3:1458595-1458614 MS.gene64189:CDS 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG - chr1.3:1458679-1458698 MS.gene64189:intron 20.0%
!!! AATTTTTTGGTATATAATCG+GGG + chr1.3:1460052-1460071 None:intergenic 20.0%
!!! CAATTTTTTGGTATATAATC+GGG + chr1.3:1460053-1460072 None:intergenic 20.0%
!!! TCTAAAACTAAGAAAATGTT+AGG + chr1.3:1459997-1460016 None:intergenic 20.0%
!!! TTATATACGGATCAATTTTT+TGG + chr1.3:1460065-1460084 None:intergenic 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1.3:1458089-1458108 MS.gene64189:CDS 20.0%
!!! TTGATTCCATTATTTCATTT+TGG + chr1.3:1458688-1458707 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1.3:1457986-1458005 MS.gene64189:CDS 20.0%
! AAATGATGACTCAAAAACTA+CGG - chr1.3:1457914-1457933 MS.gene64189:CDS 25.0%
! AACAGAAGATTTAGTATGAA+TGG + chr1.3:1458244-1458263 None:intergenic 25.0%
! AACTAAGAAAATGTTAGGTA+TGG + chr1.3:1459992-1460011 None:intergenic 25.0%
! AATAAATGATAACTTGGAAG+AGG - chr1.3:1458601-1458620 MS.gene64189:CDS 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1.3:1456573-1456592 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG - chr1.3:1458816-1458835 MS.gene64189:intron 25.0%
! AGTTGAAGAAATAGATAGTA+CGG + chr1.3:1459047-1459066 None:intergenic 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1.3:1456998-1457017 MS.gene64189:CDS 25.0%
! ATTGCTACTACTATTATCTT+TGG + chr1.3:1459695-1459714 None:intergenic 25.0%
! ATTTAGTATGAATGGACAAA+CGG + chr1.3:1458236-1458255 None:intergenic 25.0%
! GATCAATTAGAAACTGTTAA+TGG - chr1.3:1459211-1459230 MS.gene64189:CDS 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1.3:1457032-1457051 MS.gene64189:CDS 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1.3:1456844-1456863 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG - chr1.3:1459189-1459208 MS.gene64189:CDS 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1.3:1456997-1457016 MS.gene64189:CDS 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1.3:1457058-1457077 None:intergenic 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG + chr1.3:1458810-1458829 None:intergenic 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1.3:1456395-1456414 MS.gene64189:intron 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1.3:1457722-1457741 MS.gene64189:CDS 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1.3:1457294-1457313 MS.gene64189:CDS 25.0%
!!! AATGGCATTGCTTTTATATA+CGG + chr1.3:1460078-1460097 None:intergenic 25.0%
!!! ATTTTTTGGTATATAATCGG+GGG + chr1.3:1460051-1460070 None:intergenic 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1.3:1458083-1458102 MS.gene64189:CDS 25.0%
AACTGAAGAATAACTTGAGA+TGG + chr1.3:1458485-1458504 None:intergenic 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1.3:1457319-1457338 MS.gene64189:CDS 30.0%
AGAGGAATTTGCATTTATCT+TGG + chr1.3:1459761-1459780 None:intergenic 30.0%
ATGCCAAAGATTTAGTAGAA+GGG - chr1.3:1459110-1459129 MS.gene64189:CDS 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1.3:1457475-1457494 None:intergenic 30.0%
CTACTACTATTATCTTTGGT+AGG + chr1.3:1459691-1459710 None:intergenic 30.0%
CTGAGTTCAAATTCAAATTC+GGG - chr1.3:1458887-1458906 MS.gene64189:CDS 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1.3:1456709-1456728 MS.gene64189:intron 30.0%
GAGAATAAAATCAACAAGAC+TGG - chr1.3:1459445-1459464 MS.gene64189:intron 30.0%
GAGATAGGTAAATTAGAAGT+CGG + chr1.3:1459184-1459203 None:intergenic 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1.3:1457445-1457464 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG - chr1.3:1458809-1458828 MS.gene64189:intron 30.0%
GCTAATTCAAATCAAGATTC+AGG - chr1.3:1459514-1459533 MS.gene64189:intron 30.0%
GCTGAGTTCAAATTCAAATT+CGG - chr1.3:1458886-1458905 MS.gene64189:CDS 30.0%
GTTATGATAAATACCTTTCG+AGG - chr1.3:1460177-1460196 MS.gene64189:intron 30.0%
TAAATTAGAAGTCGGAGTAT+TGG + chr1.3:1459176-1459195 None:intergenic 30.0%
TATCCCTTCTACTAAATCTT+TGG + chr1.3:1459116-1459135 None:intergenic 30.0%
TATGATATGTGACATCACAT+TGG - chr1.3:1460024-1460043 MS.gene64189:intron 30.0%
TGGCAAAAATGTGACATTTA+AGG - chr1.3:1460146-1460165 MS.gene64189:intron 30.0%
TTATTAGAGAAGATGAAGAG+AGG + chr1.3:1458586-1458605 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG + chr1.3:1458669-1458688 None:intergenic 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1.3:1456498-1456517 None:intergenic 30.0%
! ATATAAAGTTGATCCTCGAA+AGG + chr1.3:1460193-1460212 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG + chr1.3:1458633-1458652 None:intergenic 30.0%
! GAATCTTGATTTGAATTAGC+AGG + chr1.3:1459514-1459533 None:intergenic 30.0%
! GTAGCAAGTAATCTTTAGAA+AGG + chr1.3:1459950-1459969 None:intergenic 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1.3:1456409-1456428 MS.gene64189:intron 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1.3:1457645-1457664 MS.gene64189:CDS 30.0%
!! AATAGTTATAAGGTGCTGTT+TGG - chr1.3:1456694-1456713 MS.gene64189:intron 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1.3:1457231-1457250 MS.gene64189:CDS 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG + chr1.3:1458299-1458318 None:intergenic 30.0%
AATATCCTCTAATTGAAGCC+TGG + chr1.3:1457627-1457646 None:intergenic 35.0%
AATTGATCCGAATCAGAGAT+AGG + chr1.3:1459199-1459218 None:intergenic 35.0%
AGTCCTTGACGAAAGAAAAA+TGG + chr1.3:1460096-1460115 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG - chr1.3:1459388-1459407 MS.gene64189:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1.3:1457604-1457623 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG - chr1.3:1458698-1458717 MS.gene64189:intron 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1.3:1457323-1457342 MS.gene64189:CDS 35.0%
ATTTGCATTTATCTTGGCCT+TGG + chr1.3:1459755-1459774 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG - chr1.3:1459142-1459161 MS.gene64189:CDS 35.0%
GAAAGAATCAATTTCAGTGG+AGG + chr1.3:1458666-1458685 None:intergenic 35.0%
GATGCCAAAGATTTAGTAGA+AGG - chr1.3:1459109-1459128 MS.gene64189:CDS 35.0%
GATTGAGCAGCAATAAATGA+GGG + chr1.3:1458854-1458873 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1.3:1457627-1457646 MS.gene64189:CDS 35.0%
GTCAAATGTGATCCTTCTAA+AGG - chr1.3:1458317-1458336 MS.gene64189:CDS 35.0%
GTTCAAATTCAAATTCGGGT+AGG - chr1.3:1458891-1458910 MS.gene64189:CDS 35.0%
TAGAAGGATCACATTTGACA+TGG + chr1.3:1458316-1458335 None:intergenic 35.0%
TAGTAGAGAACAATTGCCTA+AGG - chr1.3:1459600-1459619 MS.gene64189:intron 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1.3:1457315-1457334 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG + chr1.3:1458740-1458759 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG + chr1.3:1458855-1458874 None:intergenic 35.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1.3:1457300-1457319 MS.gene64189:CDS 35.0%
! AAGTCAGATGCAATTTTCTC+AGG + chr1.3:1459298-1459317 None:intergenic 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG + chr1.3:1459729-1459748 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG + chr1.3:1458632-1458651 None:intergenic 35.0%
! TCTTGATTCTGAGGAGAATT+AGG + chr1.3:1458731-1458750 None:intergenic 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG + chr1.3:1458549-1458568 None:intergenic 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1.3:1457727-1457746 MS.gene64189:CDS 35.0%
!!! ATGCCATTTTTCTTTCGTCA+AGG - chr1.3:1460090-1460109 MS.gene64189:intron 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG + chr1.3:1459145-1459164 None:intergenic 35.0%
AAAACGACACACTTAGAGCA+AGG + chr1.3:1458071-1458090 None:intergenic 40.0%
AAACTTGATCTCGTGGATCA+AGG + chr1.3:1457109-1457128 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1.3:1458137-1458156 MS.gene64189:CDS 40.0%
AACACCTTCAAGTCAGGTTT+CGG - chr1.3:1459411-1459430 MS.gene64189:CDS 40.0%
AAGAAGAGACATTCCTTACC+TGG - chr1.3:1459823-1459842 MS.gene64189:intron 40.0%
AAGGTGATTCTGCTTGGAAA+TGG - chr1.3:1458336-1458355 MS.gene64189:CDS 40.0%
AATCATGATTCAGGCTCAAG+AGG - chr1.3:1459577-1459596 MS.gene64189:intron 40.0%
AATTTGTACGACCGAACAGT+CGG - chr1.3:1458412-1458431 MS.gene64189:CDS 40.0%
ACAAAAGGCAATGGTTCATC+TGG - chr1.3:1459907-1459926 MS.gene64189:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1.3:1458221-1458240 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG + chr1.3:1459020-1459039 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG - chr1.3:1459019-1459038 MS.gene64189:intron 40.0%
AGATGCATGAGTGCTATCTT+TGG + chr1.3:1458444-1458463 None:intergenic 40.0%
AGGTATCTCTGAGCAAACAT+CGG + chr1.3:1457536-1457555 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1.3:1457619-1457638 MS.gene64189:CDS 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1.3:1457572-1457591 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1.3:1457606-1457625 MS.gene64189:CDS 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1.3:1457116-1457135 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1.3:1457601-1457620 None:intergenic 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1.3:1458271-1458290 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG + chr1.3:1458332-1458351 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1.3:1456478-1456497 MS.gene64189:intron 40.0%
CTGAATCAACAACATTGCCA+CGG + chr1.3:1459240-1459259 None:intergenic 40.0%
GACCACATCTTCAGCAAATA+AGG - chr1.3:1457405-1457424 MS.gene64189:CDS 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1.3:1456459-1456478 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG - chr1.3:1459568-1459587 MS.gene64189:intron 40.0%
GGAAAGAGACGCAATTCATT+TGG - chr1.3:1459634-1459653 MS.gene64189:intron 40.0%
GGAATTGTCATATAGCTTCC+CGG + chr1.3:1459379-1459398 None:intergenic 40.0%
GGAGAGATGGATGTTTGTTT+CGG - chr1.3:1458361-1458380 MS.gene64189:CDS 40.0%
GGATCACATTTGACATGGAT+AGG + chr1.3:1458311-1458330 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG - chr1.3:1459357-1459376 MS.gene64189:CDS 40.0%
GTTTCGGTGACAATTGTTTC+AGG + chr1.3:1457556-1457575 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG - chr1.3:1458448-1458467 MS.gene64189:CDS 40.0%
TATTCTCAACAAGCTTCACC+GGG - chr1.3:1459358-1459377 MS.gene64189:CDS 40.0%
TGAATCAACAACATTGCCAC+GGG + chr1.3:1459239-1459258 None:intergenic 40.0%
TGATTCTGCTTGGAAATGGT+TGG - chr1.3:1458340-1458359 MS.gene64189:CDS 40.0%
TTAAGGTTAATCACATGCGG+TGG - chr1.3:1456412-1456431 MS.gene64189:intron 40.0%
TTGGTAGGTTCTTGATCAGT+GGG + chr1.3:1459676-1459695 None:intergenic 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1.3:1456554-1456573 None:intergenic 40.0%
TTTCCATTCAGCTGATCCTT+AGG + chr1.3:1459619-1459638 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1.3:1458265-1458284 MS.gene64189:CDS 40.0%
TTTGGTAGGTTCTTGATCAG+TGG + chr1.3:1459677-1459696 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1.3:1457332-1457351 MS.gene64189:CDS 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG + chr1.3:1459011-1459030 None:intergenic 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1.3:1458170-1458189 MS.gene64189:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG + chr1.3:1457410-1457429 None:intergenic 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG - chr1.3:1458330-1458349 MS.gene64189:CDS 40.0%
! GAATCATGATTTGCATTCGC+AGG + chr1.3:1459568-1459587 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1.3:1458275-1458294 None:intergenic 40.0%
! TCAGCATTTCTGGAAGGATA+GGG + chr1.3:1459010-1459029 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG + chr1.3:1459728-1459747 None:intergenic 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1.3:1456450-1456469 MS.gene64189:intron 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1.3:1456534-1456553 MS.gene64189:intron 40.0%
AACAACATTAGGCTCAGCTG+AGG + chr1.3:1457464-1457483 None:intergenic 45.0%
ACCTGACAGATCAGAGACTT+TGG - chr1.3:1459075-1459094 MS.gene64189:intron 45.0%
ATCTGGACTTGATCTTGGAG+AGG + chr1.3:1459779-1459798 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG + chr1.3:1459796-1459815 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG + chr1.3:1459560-1459579 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1.3:1457523-1457542 None:intergenic 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1.3:1457016-1457035 None:intergenic 45.0%
CTTGGAAATGGTTGGAGAGA+TGG - chr1.3:1458348-1458367 MS.gene64189:CDS 45.0%
GAAATCCTGCAGAACAGTCT+CGG + chr1.3:1459335-1459354 None:intergenic 45.0%
GACTGTTCGGTCGTACAAAT+TGG + chr1.3:1458413-1458432 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG + chr1.3:1459871-1459890 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG + chr1.3:1459034-1459053 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1.3:1457888-1457907 MS.gene64189:CDS 45.0%
GTGACTCAACAGATACATCC+TGG + chr1.3:1458934-1458953 None:intergenic 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1.3:1457533-1457552 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG - chr1.3:1459405-1459424 MS.gene64189:CDS 45.0%
TCATTATCTCCAGCTCTGCA+GGG - chr1.3:1459883-1459902 MS.gene64189:intron 45.0%
TCCAAAGTCTCTGATCTGTC+AGG + chr1.3:1459079-1459098 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG + chr1.3:1459784-1459803 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1.3:1457564-1457583 MS.gene64189:CDS 45.0%
TTGCCTAAGGATCAGCTGAA+TGG - chr1.3:1459613-1459632 MS.gene64189:intron 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG + chr1.3:1458564-1458583 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1.3:1457347-1457366 MS.gene64189:CDS 45.0%
! TCAGGATCAGCATTTCTGGA+AGG + chr1.3:1459016-1459035 None:intergenic 45.0%
! TGTGTAGCTTGCATGAAACG+GGG + chr1.3:1459727-1459746 None:intergenic 45.0%
! TTCACCGAAACCTGACTTGA+AGG + chr1.3:1459418-1459437 None:intergenic 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1.3:1457807-1457826 MS.gene64189:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG + chr1.3:1458426-1458445 None:intergenic 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG + chr1.3:1459400-1459419 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG + chr1.3:1458629-1458648 None:intergenic 45.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1.3:1457780-1457799 MS.gene64189:CDS 50.0%
AGGCTCAACAGCATGCTCTT+TGG + chr1.3:1459278-1459297 None:intergenic 50.0%
AGGTTAATCACATGCGGTGG+TGG - chr1.3:1456415-1456434 MS.gene64189:intron 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1.3:1457781-1457800 MS.gene64189:CDS 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1.3:1457567-1457586 MS.gene64189:CDS 50.0%
CATTCCTTACCTGGTGCAAC+TGG - chr1.3:1459832-1459851 MS.gene64189:intron 50.0%
CTCGGATGGTAGAGGTGAAT+CGG + chr1.3:1458510-1458529 None:intergenic 50.0%
CTTACCAGTTGCACCAGGTA+AGG + chr1.3:1459839-1459858 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG - chr1.3:1459220-1459239 MS.gene64189:CDS 50.0%
GCAAGCTACACAATCTGCCA+AGG - chr1.3:1459735-1459754 MS.gene64189:intron 50.0%
GGCAGTCTTCTCTTCATCCT+CGG + chr1.3:1458528-1458547 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG - chr1.3:1459882-1459901 MS.gene64189:intron 50.0%
GTCTTCTCTTCATCCTCGGA+TGG + chr1.3:1458524-1458543 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG - chr1.3:1458791-1458810 MS.gene64189:intron 50.0%
TCTTCATCCTCGGATGGTAG+AGG + chr1.3:1458518-1458537 None:intergenic 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG + chr1.3:1458799-1458818 None:intergenic 50.0%
TGATCTCGTGGATCAAGGCT+CGG + chr1.3:1457104-1457123 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG - chr1.3:1459465-1459484 MS.gene64189:intron 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1.3:1457796-1457815 MS.gene64189:CDS 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG + chr1.3:1459670-1459689 None:intergenic 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1.3:1456418-1456437 MS.gene64189:intron 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG + chr1.3:1459268-1459287 None:intergenic 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG - chr1.3:1459532-1459551 MS.gene64189:intron 50.0%
ACACACCGAGACTGTTCTGC+AGG - chr1.3:1459327-1459346 MS.gene64189:CDS 55.0%
ACCTGGTGCAACTGGTAAGC+AGG - chr1.3:1459840-1459859 MS.gene64189:intron 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG - chr1.3:1458619-1458638 MS.gene64189:CDS 55.0%
CCTGGTGCAACTGGTAAGCA+GGG - chr1.3:1459841-1459860 MS.gene64189:intron 55.0%
CGATTCACCTCTACCATCCG+AGG - chr1.3:1458508-1458527 MS.gene64189:intron 55.0%
CTCAGACCAACTAGAGACCG+AGG - chr1.3:1458790-1458809 MS.gene64189:intron 55.0%
CTGCAGGGCACAAAAGGCAA+TGG - chr1.3:1459898-1459917 MS.gene64189:intron 55.0%
CTGGATCAAGCAGTAGACGC+AGG - chr1.3:1459464-1459483 MS.gene64189:intron 55.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1.3:1457872-1457891 None:intergenic 55.0%
TCAAATTCGGGTAGGCCGAG+TGG - chr1.3:1458899-1458918 MS.gene64189:CDS 55.0%
TCCTGGTCGAGCAAACCACT+CGG + chr1.3:1458917-1458936 None:intergenic 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG + chr1.3:1458792-1458811 None:intergenic 55.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1.3:1457788-1457807 MS.gene64189:CDS 60.0%
CCAGCTCTGCAGGGCACAAA+AGG - chr1.3:1459892-1459911 MS.gene64189:intron 60.0%
CCCTGCTTACCAGTTGCACC+AGG + chr1.3:1459844-1459863 None:intergenic 60.0%
TCGTGGATCAAGGCTCGGCA+TGG + chr1.3:1457099-1457118 None:intergenic 60.0%
! CCTTTTGTGCCCTGCAGAGC+TGG + chr1.3:1459895-1459914 None:intergenic 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG - chr1.3:1459478-1459497 MS.gene64189:intron 60.0%
!! GCCGAGTGGTTTGCTCGACC+AGG - chr1.3:1458913-1458932 MS.gene64189:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 1456391 1460363 1456391 ID=MS.gene64189
chr1.3 mRNA 1456391 1460363 1456391 ID=MS.gene64189.t1;Parent=MS.gene64189
chr1.3 exon 1460283 1460363 1460283 ID=MS.gene64189.t1.exon1;Parent=MS.gene64189.t1
chr1.3 CDS 1460283 1460363 1460283 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
chr1.3 exon 1459106 1459438 1459106 ID=MS.gene64189.t1.exon2;Parent=MS.gene64189.t1
chr1.3 CDS 1459106 1459438 1459106 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
chr1.3 exon 1458819 1459010 1458819 ID=MS.gene64189.t1.exon3;Parent=MS.gene64189.t1
chr1.3 CDS 1458819 1459010 1458819 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
chr1.3 exon 1458563 1458643 1458563 ID=MS.gene64189.t1.exon4;Parent=MS.gene64189.t1
chr1.3 CDS 1458563 1458643 1458563 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
chr1.3 exon 1456826 1458473 1456826 ID=MS.gene64189.t1.exon5;Parent=MS.gene64189.t1
chr1.3 CDS 1456826 1458473 1456826 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
chr1.3 exon 1456391 1456395 1456391 ID=MS.gene64189.t1.exon6;Parent=MS.gene64189.t1
chr1.3 CDS 1456391 1456395 1456391 ID=cds.MS.gene64189.t1;Parent=MS.gene64189.t1
Gene Sequence

>MS.gene64189

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTGAATCTCTCTCTTAGATAATTCCGAGGTTTAGTGTTTTTCACAATTTTTCAGTTTTATGTGTGTGTTTTTGTTTGATCCGAGGATGTTTCATGCAACCAACTTCGTTTCTTTTCTTATTATCATGTTTCTTGCATTCATTAATTACTTAATTAATTTGCTGTTTAATGTTTTATTTTCTTTCTATTTTTGGATTCATATTCAAGATTTCGTTCATAATTGAATAGTTATAAGGTGCTGTTTGGATAACATTGAATAGGAAAATTCATGTTTTTTTTTTTTTGAATATCCTTTTTTTTTTTGTGATCTTTGATCTCAAGATTAGTAATGAATATCATGTAGTTGATGATGCTCTCTGAAAATCATTTTCCTTGCTTGATTTTACTTCTTTACTAATTTTTCTTGTTTATTTTGATAATCACTAGTATTTCACGATGCTAGAAAATGTCACTTGATCTGATTATTGTGAATTAATTATTATTTTTCACATAATAATTGAAGTAAATTAAATTCATGAGTGTGAATTATATACATCTTTATGCCAATGGGCTGTGACTTTTGATGTAAGTTGTACAATTTACGGCCGTTTTTTGTGCTTAGTTGATATGAACTTAGTTATTTGAACCATGCCGAGCCTTGATCCACGAGATCAAGTTTTGTGCATAAAACTTAGTTATAAACATCTAGATAAAGTTTGTGCATCGTATAAGTAAAATGAGATAGTTGCACATTGTACTGTAGTAAGTTTTATTGAATAAGTGAAATTTTGATCGTGATTCAGGAAATATATATTTATGCATTCAAGTTTGTTCTCACAATTGATTTTTCTTTAATGATGTTCCAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGCAAATAAGGAGACTTCAGAATATCCAAGTATTAGTTTTCAATCCTCAGCTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCTGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGTATGTTTCTTTTCTGAGGTTTTATGAATCAAAATCTTGTAAGGAGAAAACGCTCATTTTCCTTTTATAAATCTTTTGTTCGTGTTTCTTTTTAGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGTATATCTATTTGAATTTGCTTCGTAGCTACTAATTTCATGATACCAAAATTTTATTCGTTTAATAGTTGTGGTTTCATTGAAGAGATATGTTATTACATTTACGTTACTATCAGATGATATGTGCTGCAAGCCTTGCTCTAAGTGTGTCGTTTTATTTTTTTACTGTGGTTTAGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGGTACAATTAACATATTGTTTGTTTTGCCTGTTTAACGTCATCCGTTTGTCCATTCATACTAAATCTTCTGTTGTTTCCTTCCATTGAAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATTTGTACGACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAAGTTATTCTTCAGTTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCTGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTACGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCCAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTGAGAGAACACACCGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACATAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAAAGGCAATGGTTCATCTGGTAAATTTCTACAACATTCCTTTCTAAAGATTACTTGCTACTTTGTTTTTTTAAACTTTACCATACCTAACATTTTCTTAGTTTTAGAATAGTCTTATGATATGTGACATCACATTGGTCCCCCGATTATATACCAAAAAATTGATCCGTATATAAAAGCAATGCCATTTTTCTTTCGTCAAGGACTAACATAATGTCATTATATAGACAGATATTATGGCAAAAATGTGACATTTAAGGACTAATTTGTTATGATAAATACCTTTCGAGGATCAACTTTATATTTTTATCGAATTATGCTTCTAACCTTATTTATAACCAAAGAATATAATGACATACTTATTCATGTGACAGAGCTTTAGACGATATTTCTTTTGACTCTATGAATGATTACTTAAGAATTTTTTATCTTTGAAATTGTCATTTTCAGCTTAG
Protein sequence

>MS.gene64189.t1

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPSISFQSSAEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQVILQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSTPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLLREHTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKHKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTKGNGSSA