AlfalfaGEDB | MS.gene64367

M. sativa cultivar XinJiangDaYe / MS.gene64367

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008289
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64367.t1	XP_013464426.1	94.3	715	41	0	1	715	44	758	0.00E+00	1299.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64367.t1	Q93XX4	65.8	608	187	9	1	603	40	631	8.5e-224	778.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64367.t1	A0A072VA30	94.3	715	41	0	1	715	44	758	0.0e+00	1299.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055551	MS.gene64367	0.812212	4.75E-51	-1.69E-46
MS.gene057093	MS.gene64367	0.868407	6.68E-66	-1.69E-46
MS.gene057622	MS.gene64367	0.802931	4.44E-49	-1.69E-46
MS.gene060964	MS.gene64367	0.946694	2.83E-105	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64367.t1	MTR_2g072180	95.524	715	32	0	1	715	44	758	0.0	1355
MS.gene64367.t1	MTR_2g072180	95.210	668	32	0	48	715	1	668	0.0	1257
MS.gene64367.t1	MTR_1g025550	26.190	294	187	11	29	316	67	336	8.48e-18	87.8
MS.gene64367.t1	MTR_6g084400	33.913	115	71	2	243	356	614	724	8.41e-16	82.0
MS.gene64367.t1	MTR_1g094810	25.000	292	190	10	29	314	67	335	1.44e-15	80.5
MS.gene64367.t1	MTR_4g073400	25.000	276	172	10	29	295	67	316	1.30e-14	77.8
MS.gene64367.t1	MTR_2g027360	46.341	82	41	2	246	326	5	84	1.03e-13	75.5
MS.gene64367.t1	MTR_4g115660	22.910	323	228	9	26	345	64	368	3.90e-13	73.2
MS.gene64367.t1	MTR_8g035590	26.421	299	191	11	31	322	68	344	7.15e-13	72.0
MS.gene64367.t1	MTR_8g104330	30.435	115	75	2	242	355	559	669	8.18e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64367.t1	AT3G14590	67.675	628	184	10	1	619	40	657	0.0	832
MS.gene64367.t1	AT3G14590	67.675	628	184	10	1	619	9	626	0.0	831
MS.gene64367.t1	AT3G14590	67.472	621	183	10	8	619	2	612	0.0	818
MS.gene64367.t1	AT1G53590	65.789	608	187	9	1	603	40	631	0.0	807
MS.gene64367.t1	AT3G14590	65.749	581	180	10	48	619	1	571	0.0	739
MS.gene64367.t1	AT3G14590	64.685	555	177	10	74	619	25	569	0.0	687
MS.gene64367.t1	AT1G05500	24.074	324	223	9	26	345	64	368	1.90e-16	83.6
MS.gene64367.t1	AT5G04220	23.024	291	197	9	29	314	5	273	1.88e-14	77.0
MS.gene64367.t1	AT1G03370	39.450	109	60	3	245	349	4	110	5.77e-14	76.3
MS.gene64367.t1	AT1G03370	39.450	109	60	3	245	349	4	110	5.89e-14	76.3

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Find 162 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATCTAATCAAAGAA+GGG	0.596262	2.4:-24166738	MS.gene64367:intron
AAACATATGGCCTATATGTA+TGG	0.422201	2.4:-24166198	MS.gene64367:CDS
AAAGAGAGACGTCAAGGACA+TGG	0.585649	2.4:-24161352	MS.gene64367:CDS
AAATTTGCAGCCCAATATGC+TGG	0.498130	2.4:-24164891	MS.gene64367:intron
AAATTTGTATCACCAGACCA+AGG	0.724755	2.4:-24164854	MS.gene64367:intron
AACACTGCTGGCTTTCCGAC+TGG	0.476491	2.4:-24161429	MS.gene64367:CDS
AACATCAACAACCAGCATAT+TGG	0.311236	2.4:+24164880	None:intergenic
AACATCGAATGAAAACTGTT+AGG	0.484264	2.4:-24161605	MS.gene64367:CDS
AACCACATTCACATCGGATT+TGG	0.255125	2.4:+24161071	None:intergenic
AACCTCATTAACATCGGATT+TGG	0.269470	2.4:+24161110	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATATGGCCTATATGTA+TGG	-	chr2.4:24161511-24161530	MS.gene64367:CDS	30.0%
AAATAGAATCTGAACTTGAG+TGG	-	chr2.4:24161030-24161049	MS.gene64367:CDS	30.0%
AACATCGAATGAAAACTGTT+AGG	-	chr2.4:24166104-24166123	MS.gene64367:intron	30.0%
AAGTTGTAGATGGTATAATC+TGG	+	chr2.4:24164253-24164272	None:intergenic	30.0%
AATATAATTGAGGTAAGGTG+GGG	+	chr2.4:24164070-24164089	None:intergenic	30.0%
ACAGTGATTGAATAATTGGA+AGG	+	chr2.4:24163875-24163894	None:intergenic	30.0%
ACATGATAAAGAAGAAATGG+TGG	-	chr2.4:24166756-24166775	MS.gene64367:CDS	30.0%
ACCTTTGATTACTGATATCA+GGG	-	chr2.4:24161867-24161886	MS.gene64367:CDS	30.0%
AGAAAACACTTTCTCCAAAA+TGG	-	chr2.4:24163316-24163335	MS.gene64367:intron	30.0%
ATAAAGATCTCCAAAACGAT+TGG	+	chr2.4:24164559-24164578	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	24160918	24166813	24160918	ID=MS.gene64367
chr2.4	mRNA	24160918	24166813	24160918	ID=MS.gene64367.t1;Parent=MS.gene64367
chr2.4	exon	24166739	24166813	24166739	ID=MS.gene64367.t1.exon1;Parent=MS.gene64367.t1
chr2.4	CDS	24166739	24166813	24166739	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24166124	24166267	24166124	ID=MS.gene64367.t1.exon2;Parent=MS.gene64367.t1
chr2.4	CDS	24166124	24166267	24166124	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24165813	24165905	24165813	ID=MS.gene64367.t1.exon3;Parent=MS.gene64367.t1
chr2.4	CDS	24165813	24165905	24165813	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24165589	24165720	24165589	ID=MS.gene64367.t1.exon4;Parent=MS.gene64367.t1
chr2.4	CDS	24165589	24165720	24165589	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24165242	24165394	24165242	ID=MS.gene64367.t1.exon5;Parent=MS.gene64367.t1
chr2.4	CDS	24165242	24165394	24165242	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24165053	24165094	24165053	ID=MS.gene64367.t1.exon6;Parent=MS.gene64367.t1
chr2.4	CDS	24165053	24165094	24165053	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24164855	24164903	24164855	ID=MS.gene64367.t1.exon7;Parent=MS.gene64367.t1
chr2.4	CDS	24164855	24164903	24164855	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24164564	24164656	24164564	ID=MS.gene64367.t1.exon8;Parent=MS.gene64367.t1
chr2.4	CDS	24164564	24164656	24164564	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24164295	24164478	24164295	ID=MS.gene64367.t1.exon9;Parent=MS.gene64367.t1
chr2.4	CDS	24164295	24164478	24164295	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24163678	24163801	24163678	ID=MS.gene64367.t1.exon10;Parent=MS.gene64367.t1
chr2.4	CDS	24163678	24163801	24163678	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1
chr2.4	exon	24160918	24161976	24160918	ID=MS.gene64367.t1.exon11;Parent=MS.gene64367.t1
chr2.4	CDS	24160918	24161976	24160918	ID=cds.MS.gene64367.t1;Parent=MS.gene64367.t1

Gene Sequence

>MS.gene64367

GTTCATGAACGTTATGTTACAAGGCTAAGGAAGAAGTTGCAGTTTGAAGAGAGAAAACAATCTAATCAAAGAAGGGTAATGATTCTGCTTGTTATTTATGTTATTGATGTTGAAATAGAATCTGAACTTGAGTGGAGATATGAAGTTAAAATTCAAATGTGTTGCCCCTTCTTTTCATGTGTTTTGAATGGATTATTGCTTGTCAATAAGGTTTCTATTGATTAAAGGATAAAAGGACTTTTAGTGTATGTTTGTATCGGCAGTGAGTTTTGCAAAATCACTGTGTCACTGTGATTTTGTTGAAGCTTCAAAGTGTAGTTTTTGCCAAAATTGCAGAGCTCACTGCTAACTGTGATTTTGTCAATCTCACCGTGAATGCAAAACATGTACTAAGGATTAATGTTCAGCTTTTATAGTATCTTTGATTTCTTTTTCTTTATCATTGTCTTGAGAGTTATTGGGGCTGTGGTGTTGTAATCGCAGAATATTATGTTATGATGATTTACTAATATAACTTGCATGGTGATGACCTTTCTTGAATTTTAGGTACTTTCTGATTCTGAAACAGTTCGGTGGTTGAACCATGCAGTTGAAAACATATGGCCTATATGTATGGAACAGATTGCATCTCAGAAGATTTTACTCCCTATCATACCATGGTTCTTAGAGAAGTACAAACCTTGGACTGCTGTATGATTCATATACCTTTCAGTTATTTATCTTTGACAGTGCTTGATTAAACCATATGAAGTTCAAACATTTCCTTAATAGTTATGTTCAAATGCCATTCCTTTTCCTTTTTGTTCCTTTCATATATTATGGTTTCTTTATGCTTGTGTTCGAGTGTAAAACTTTTCCTTTGATTTTGTGTATGATCAGATGTTAATGTCAATGTATTATATTTGCAGAAAGAAGCTTCTGTTCAGCACCTATATTTGGGAAGAAACCCACCTTTGATTACTGATATCAGGGTACTTCGCCAGTGTGATGATGACCACTTGGTATGTAACATTCTTAAGCAGAAGGACAATGTATTGTTCAGCATCAGCATATTCAACTGAAAATTTCTTATTTTACGCTGTGATCAATGCAGGTTCTTGAGTTAGGAATGAATTTTCTCACGGGTGATGATATGAGTGCAATACTTGCTGTGAAACTAAGAAAAAGATTGGGCTTTGGAATGTCAACAAAGCTGCATATAACGGGAATGCATGTTGAAGGGAAGGTAGGACTGCGGAATTTCAATTTTACCTAGACGGATTTGTTGTATATGTTAAAATAAATATTCTTTTGCTGATTAAGGTCGGATACAAGATATGCACGTCTCTGAACTTTTGTTTGAAATTCAAAATATTACTCATGCAGTTCAATTCTTACATAACATTTCAATTATTTTATTTATATTTGTTTTTTCTATAGGTCTTGGTAGGGGTGAAGTTCCTCAAGGAATGGCCTTTTCTTGGTCGTATACGTGTATGCTTTGTTGAGCCTCCATATTTTCAGATGACTGTCAAACCTATTTTTACACATGGGCTTGATGTGACAGAACTTCCAGGAATTGCTGGCTGGCTTGTAAGTGGACATGGATTTTATTTGATTTATATAATGCACTTTTAAAAATAAAATTATATTATGCAGCATGAGAATGATTGTTTTCGTTTTGTTTTCCTTCTCTCGAATCAAGTAATTTGTATTTATCGTGACTTTTCGTTGTTTCAGGATAAGCTTCTGTCCATTGCTTTTGAACAGACCCTTGTTGAGGTGAGTGAAGTCTGTTTTGTTATGATGTTCTCATACTGTTAAGAAAGTAAAATAATGTGTTGATAATATACATGTTTTAGAGTTCTTCACGTCTCTTATTTTTTTCGAAGTTAGAAACCTGTTATATTTTTAATTGTTCAAATTTGCAGCCCAATATGCTGGTTGTTGATGTTGAGAAATTTGTATCACCAGACCAAGGTAAAGATATTTGTCATGTAATTTCATAGACTTCCGTTAAAATCATTAGTCATTGAACAAAGGACACTCCCCATAACCCTCACTAGAATCCTTATTAAACAAATCTTTGAATGAAATATAATTATAACCCATGCTTGACATAATTGTTACAATTTTTATTATTAAATACTCATCTTTCCATAAATCTTATTGTTATAGAGCCTTGGTTTAAAGTGGACGAGAAGGAACCTGTTGCTTATGCAAAAATCGAAATTGTTGAGGCAGCTGAAATGAAGCCATCAGATCTAAATGGTTACTATTCCTTTCTCTTTGATGATATTTTTGTCATTCTCTTCTATATGTTGTTTTGTGACTAACAAATTATAGTATATTTCAGGATTAGCCGATCCTTATGTGAAAGGTCATTTGGGAGGATATAGATTCAGGACGAAGATACAAAAGAAAACACTTTCTCCAAAATGGCAAGAGGAATTCAGAATTCCCATCATAACATGGGATTGTAACAATGTTCTGGTTATTGAAGTTCGTGACAAGGACCATTTCTATGATGACATCCTTGGGTTAGTTCCGTCTGTCTGAACTTTGAACTTTTCCTTATGTGGTTTTTAGTATAGTTCAATGGACATACAATGTTAGTGTAAAACAACATTACAGTGATATCCAATGAGAAACTATCATGTTTCCATCTCATACTGCTAATTTTAAACTACCTGTACAATAGTGGGTGATGTGGCAAAATAATATATTTTCACTAGATGTCGGTGTAAAATGGTTTACACTGACAGTGTAAATCCTTGTTAATATACATTTGCTTTGTTTATTTATTTATTTTTTCTTTCTTGAGAATCGACTTCATCTCTACCTGCCTTTTCTGCTATTATCATGAAGTTAATCTTACAATACTTTCTTTTTATTTCTTATTCAACCTTTTCTCTAGCACTTTGTTTGGTTATTGATTGTCTCTGCTATACGATATTCACTGTGTATGACAATTTCCTTCCAATTATTCAATCACTGTGTTTATTCATCAGAACCAATGTCACTCTCTTGCAGGGACTGTTCTGTGAACATCAATGATTTTAGGGACGGGCAAAAATATGATAAGTGGGTGCCACTACAGAAAGTAAAAATGGGGAGGTTGCACTTGCGAATAACAGTTCTTGATGATAAGGAAAAGGTAACCCCTCCTCCCCCACCTTACCTCAATTATATTCATTCCTCGCAATATTATCCAATAATGTGAAACTTGTATATTAAATAGACTCCTGAGCCTATATGTTGATTCCTCAACATTGTTCACTCCACATAAGTATAATAGTGCCTCCTACAATCCCTCTTATTTCTATATTGTATTCTCCCTTTTCTATACACTTCCAGATTATACCATCTACAACTTTCACATAATAATAATAATAATCACGTGATTCTTCAAAAAAAATAAAAATAATAACTGCATGTTAAATGTATCAGTAATAGCCAAAAATAAAAAATATTATAACTTCTAGATTCAGGTATATGATATCAAACCCGAACACACATTTTAACACTCATGATCCGCCCTTAATTCCCAACTATTAAAACAAACACAACAATCATAGTTATCATTTTGATTAGAGCATTTTTTTTTAGTACAAGTTTTTCACATATGAAATGTCTTTGCCACACAAAATGAAAAAGAGCCAATCGTTTTGGAGATCTTTATGTATTAACAGGTATGAAATCATAAATTCATCATCCTTCAAAAACATTGTTGCATTGTTCGAACACATTTCCTTTTTTCATGATATTCAATCTATAAACATTATACTGACAAAACACCAATTTTATTTTAGATATCGTTGGAGTTCTTCAAGCAGACAAAAAAATAAAATATATGTAGCTGGCAAGCCTACAAAAATGTGCGGACTTCAGTAAAAGATAAAAGACCATTGACCATAATAATAAATATATTTCCAAAACAAACATATGTACTTATAAAGTGCATTATATATTGCGAAGTCACGTTACATTATCATACACAATTTGATATACCAATTCATTCCGTTGTCAAGAATGAAATTGACTTAGTACAAGAGAGGGCATTGGAAATTGACTCCAAGTAAGACTTGCGTTAATTCACAAAATCATTGTCATCATACTTTTATTTTTGAAATTATAAAGCTCTCATATCAAAATTTTAAAGAAGTTTGCTCAACTACACATCACAGAAGCTTTTACACCTACAATATCTTACAACATCATTTTCTTCAAAAGCCAATCAAACAAGTACATTCTTTCAAACTCACATACTTTAAATTAATAATAACCTATTTCTTTTCATCGAAATCAAATGAAAAGAAAGGAAAGGAGAATAATAAGTGGAACAAAAGGACGAGAAAGAAGAAAACCCAATTTTTAGAAACAAAAAGAAGAAAAAATCAAAATATCAAAATGTTGATATCTTCTCACTTCATTTGCATATCTTAAATTATCTTATGCTACATTTAAATGTTGAAAATTAATTACATTGTTATCTATATGCTTAAACTTTATTGTCATTGACTTATGTTATTTCAATTGTACAAAATAGCTATATATTTACAATGAAAAAAAAATGTATCAACACACACGCAACCCACGAGTTACACTCTAGTTATAGAAGATGAAAATGAAAACAGTTCTCTAGTCTTCATGTAAAAATATTTCAATTGTACAAAATATCTATATATTTACAATGAAAATAAAATGGATCAACACACGCGCAACCCACGGGTTACACTCTAGTTATAGAAGATGAAAATGAAAACAGTTCTCTAGTCTCCACGTAGCGCCACAAGTTGCTCCTTTGTTATTTGATCTATTGTTGATGTTTGATTTCAATTTTGAATTATGTTTACAGGAAGCTGATACTACATGTGACCAAGAGACAATAGACATTGAAGAAAGAAAAGATTCTTTTGCAAATGAGACCACCAACAAAGGTTCCTTCTCATCCGTTTCATCTGGAAAATCTCCAAAATTGGCAGATAACTATGAGCCAATAAAAATTGAAGGCCAAGAGAAGACAGGTGTTTGGATACATCAGCCAGGAAGCGAAGTTCCCCAAATGTGGGAGCCAAGAAAAGGCAAGAATCGACGCCTCGACACAGAAATTCAGAGGGAACCTAACGATATATGTGGCTGTAATTCAACTGTATCTGGATCCTTGAACAATGACAGCAGCAGTCCCGATGATAATGCTGAAGATAAACATCGAATGAAAACTGTTAGGAAAGGCCTGCACAAAATCGGTTCTGTATTTTGTAGGAGTCGGAAAATGGACGATAATTCAGGTCCTATTGCGCAGGACTTTCCATCTCCACGTGATAACATTAGGTCAGTAAATGCTTCTAAAGGGGTTGGCGTGAAGTTTGTTATGGATGATAACACTGCTGGCTTTCCGACTGGTAAGATTCAGGTAGAAGGTGGATCAACGGAAGGGAGTGGTCCTGATAGCCCGGCAAAGAGAGACGTCAAGGACATGGCAAAGAATATTTTCAAAAATGCGGAAAAATCAGCTCGCAGCTTAAAACATGTTCTTTCTCGTAAATCAAGGAAATCAAAAGGTGATTCAGCAAAAACATTTCGTGAAAGAGAAAATGAATCTGACTCATCTAGTGATGAATCTCTTTCAGTTCAGTCCCCAAAAGATGCAAGAACTAAAGTTGTTTCACAGGCCATTGCTCAAGGTAACATTGGTTCCCCCAAATCCGATGTTAATGAGGTTCACAATGTTCGTTCCCCCAAATCCGATGTGAATGTGGTTCACAATGTGCCATCCAACACCACTGTGGTCAACAAGGAGCCTCGAAAGGCATTCTCCCCTGAAAGGTCTAATGAAAAAATTGTTATGTCTGGCGAACATGATAAAGAAGAAATGGTGGCAGATAAAAGGGTTTTCAGCAGTATAGCAGAGTGA

Protein sequence

>MS.gene64367.t1

VHERYVTRLRKKLQFEERKQSNQRRVLSDSETVRWLNHAVENIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEASVQHLYLGRNPPLITDIRVLRQCDDDHLVLELGMNFLTGDDMSAILAVKLRKRLGFGMSTKLHITGMHVEGKVLVGVKFLKEWPFLGRIRVCFVEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPDQEPWFKVDEKEPVAYAKIEIVEAAEMKPSDLNGLADPYVKGHLGGYRFRTKIQKKTLSPKWQEEFRIPIITWDCNNVLVIEVRDKDHFYDDILGDCSVNINDFRDGQKYDKWVPLQKVKMGRLHLRITVLDDKEKEADTTCDQETIDIEERKDSFANETTNKGSFSSVSSGKSPKLADNYEPIKIEGQEKTGVWIHQPGSEVPQMWEPRKGKNRRLDTEIQREPNDICGCNSTVSGSLNNDSSSPDDNAEDKHRMKTVRKGLHKIGSVFCRSRKMDDNSGPIAQDFPSPRDNIRSVNASKGVGVKFVMDDNTAGFPTGKIQVEGGSTEGSGPDSPAKRDVKDMAKNIFKNAEKSARSLKHVLSRKSRKSKGDSAKTFRERENESDSSSDESLSVQSPKDARTKVVSQAIAQGNIGSPKSDVNEVHNVRSPKSDVNVVHNVPSNTTVVNKEPRKAFSPERSNEKIVMSGEHDKEEMVADKRVFSSIAE