AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64500.t1 MTR_2g043050 92.166 217 14 1 1 217 1 214 3.21e-146 406
MS.gene64500.t1 MTR_2g043030 72.350 217 45 3 1 217 1 202 8.53e-106 303
MS.gene64500.t1 MTR_2g043020 69.124 217 53 3 1 217 1 203 1.99e-98 285
MS.gene64500.t1 MTR_2g043040 64.286 238 56 4 1 217 1 230 5.76e-98 284
MS.gene64500.t1 MTR_1g014860 62.037 108 30 2 5 101 4 111 5.18e-40 136
MS.gene64500.t1 MTR_1g014780 66.316 95 25 1 14 101 33 127 2.47e-39 135
MS.gene64500.t1 MTR_1g014820 52.518 139 59 2 14 148 22 157 9.20e-39 135
MS.gene64500.t1 MTR_1g014800 65.934 91 24 1 18 101 30 120 1.66e-37 130
MS.gene64500.t1 MTR_3g105510 65.517 87 26 1 19 101 37 123 1.77e-34 123
MS.gene64500.t1 MTR_3g105480 65.882 85 25 1 21 101 33 117 4.59e-33 119
MS.gene64500.t1 MTR_7g028925 72.059 68 16 1 14 81 24 88 1.20e-29 106
MS.gene64500.t1 MTR_4g035430 50.000 90 45 0 11 100 24 113 1.83e-23 94.0
MS.gene64500.t1 MTR_7g117690 51.316 76 37 0 18 93 27 102 4.62e-23 91.7
MS.gene64500.t1 MTR_3g074130 57.534 73 25 1 4 76 141 207 1.16e-21 91.3
MS.gene64500.t1 MTR_3g102100 57.534 73 22 1 3 75 38 101 1.17e-21 87.8
MS.gene64500.t1 MTR_5g062700 50.633 79 39 0 6 84 160 238 3.86e-21 90.5
MS.gene64500.t1 MTR_3g110205 46.591 88 47 0 14 101 38 125 8.89e-21 86.3
MS.gene64500.t1 MTR_6g088405 53.947 76 35 0 18 93 43 118 1.14e-20 86.7
MS.gene64500.t1 MTR_7g046260 51.316 76 37 0 19 94 61 136 1.50e-20 86.7
MS.gene64500.t1 MTR_8g027465 46.154 78 34 1 18 87 38 115 1.72e-20 85.1
MS.gene64500.t1 MTR_5g016750 52.439 82 35 2 19 96 25 106 1.75e-20 85.1
MS.gene64500.t1 MTR_1g019110 48.315 89 38 1 19 99 44 132 3.15e-20 84.3
MS.gene64500.t1 MTR_2g090235 58.730 63 26 0 14 76 213 275 3.42e-20 88.2
MS.gene64500.t1 MTR_1g090170 57.627 59 25 0 18 76 151 209 4.20e-20 86.7
MS.gene64500.t1 MTR_1g090170 57.627 59 25 0 18 76 238 296 4.60e-20 87.8
MS.gene64500.t1 MTR_8g090350 57.377 61 26 0 16 76 110 170 6.98e-20 85.9
MS.gene64500.t1 MTR_5g012910 44.340 106 59 0 2 107 11 116 1.22e-19 82.8
MS.gene64500.t1 MTR_2g105380 47.561 82 43 0 12 93 110 191 1.24e-19 86.3
MS.gene64500.t1 MTR_4g100650 44.578 83 46 0 12 94 67 149 7.10e-19 82.4
MS.gene64500.t1 MTR_8g006410 46.535 101 46 1 2 102 43 135 8.05e-19 81.3
MS.gene64500.t1 MTR_2g078680 60.345 58 23 0 19 76 31 88 1.20e-18 80.9
MS.gene64500.t1 MTR_1g087920 48.684 76 38 1 2 77 61 135 1.78e-18 82.4
MS.gene64500.t1 MTR_4g078710 46.154 78 40 1 6 81 13 90 2.63e-18 80.1
MS.gene64500.t1 MTR_2g101340 45.455 77 42 0 18 94 40 116 2.90e-18 79.7
MS.gene64500.t1 MTR_1g048610 52.174 69 32 1 10 77 80 148 3.12e-18 80.5
MS.gene64500.t1 MTR_2g014300 53.623 69 30 1 19 87 15 81 3.56e-18 79.0
MS.gene64500.t1 MTR_7g021010 45.570 79 39 1 1 75 29 107 4.22e-18 78.6
MS.gene64500.t1 MTR_4g114570 40.000 90 54 0 16 105 4 93 9.81e-18 78.6
MS.gene64500.t1 MTR_2g435590 49.254 67 34 0 12 78 89 155 1.14e-17 79.3
MS.gene64500.t1 MTR_3g053690 59.649 57 23 0 19 75 27 83 1.15e-17 78.6
MS.gene64500.t1 MTR_8g102800 45.000 80 44 0 14 93 32 111 1.20e-17 79.0
MS.gene64500.t1 MTR_3g072610 49.123 114 48 4 1 104 1 114 1.28e-17 78.6
MS.gene64500.t1 MTR_4g100420 53.521 71 30 2 6 75 146 214 1.38e-17 79.7
MS.gene64500.t1 MTR_7g021010 51.562 64 31 0 12 75 5 68 1.66e-17 76.3
MS.gene64500.t1 MTR_8g022820 43.373 83 47 0 11 93 116 198 1.83e-17 80.1
MS.gene64500.t1 MTR_8g022820 43.373 83 47 0 11 93 116 198 1.83e-17 80.1
MS.gene64500.t1 MTR_8g022820 43.373 83 47 0 11 93 115 197 1.84e-17 80.1
MS.gene64500.t1 MTR_2g014340 55.556 63 28 0 19 81 19 81 1.94e-17 77.4
MS.gene64500.t1 MTR_8g006815 59.322 59 23 1 19 76 96 154 2.94e-17 77.0
MS.gene64500.t1 MTR_8g006840 59.322 59 23 1 19 76 125 183 3.09e-17 77.0
MS.gene64500.t1 MTR_3g106290 55.000 60 27 0 19 78 8 67 3.33e-17 76.6
MS.gene64500.t1 MTR_8g013860 46.667 75 40 0 19 93 47 121 3.51e-17 77.0
MS.gene64500.t1 MTR_5g008790 41.379 87 46 2 19 100 18 104 3.71e-17 75.9
MS.gene64500.t1 MTR_1g069985 36.552 145 71 5 1 132 56 192 5.01e-17 76.6
MS.gene64500.t1 MTR_1g074230 60.000 60 23 1 19 77 19 78 6.34e-17 74.7
MS.gene64500.t1 MTR_2g085015 43.182 88 48 2 18 103 46 133 6.82e-17 76.6
MS.gene64500.t1 MTR_7g020980 54.386 57 26 0 19 75 51 107 7.23e-17 75.5
MS.gene64500.t1 MTR_4g010640 53.333 60 28 0 16 75 4 63 8.19e-17 76.3
MS.gene64500.t1 MTR_4g008860 55.000 60 27 0 19 78 8 67 8.79e-17 75.9
MS.gene64500.t1 MTR_5g085070 57.895 57 24 0 19 75 51 107 1.08e-16 77.0
MS.gene64500.t1 MTR_8g069360 57.143 56 24 0 19 74 44 99 1.25e-16 78.2
MS.gene64500.t1 MTR_1g074310 56.667 60 25 1 19 77 21 80 1.37e-16 73.9
MS.gene64500.t1 MTR_6g465460 41.000 100 52 1 18 117 53 145 1.42e-16 76.6
MS.gene64500.t1 MTR_2g103700 49.231 65 33 0 16 80 4 68 1.52e-16 74.7
MS.gene64500.t1 MTR_4g088005 56.452 62 22 2 19 77 57 116 1.77e-16 73.2
MS.gene64500.t1 MTR_4g100450 52.113 71 31 2 6 75 143 211 1.79e-16 76.6
MS.gene64500.t1 MTR_4g086165 52.381 63 30 0 13 75 76 138 1.98e-16 75.1
MS.gene64500.t1 MTR_5g085100 56.140 57 25 0 19 75 46 102 2.13e-16 76.3
MS.gene64500.t1 MTR_6g088425 50.000 84 42 0 18 101 48 131 2.18e-16 75.5
MS.gene64500.t1 MTR_6g465430 41.000 100 52 1 18 117 53 145 2.57e-16 75.5
MS.gene64500.t1 MTR_5g032820 53.968 63 27 1 19 79 46 108 3.09e-16 76.6
MS.gene64500.t1 MTR_4g086160 56.140 57 25 0 19 75 96 152 5.32e-16 74.3
MS.gene64500.t1 MTR_1g070070 55.000 60 26 1 19 77 21 80 5.90e-16 72.4
MS.gene64500.t1 MTR_4g086220 56.140 57 25 0 19 75 96 152 6.55e-16 73.9
MS.gene64500.t1 MTR_2g089170 56.897 58 25 0 19 76 65 122 6.56e-16 73.2
MS.gene64500.t1 MTR_8g006825 40.426 94 50 2 4 91 81 174 6.58e-16 73.6
MS.gene64500.t1 MTR_1g028560 36.134 119 67 2 19 136 115 225 8.06e-16 75.1
MS.gene64500.t1 MTR_5g008550 46.392 97 45 1 4 100 13 102 8.42e-16 73.2
MS.gene64500.t1 MTR_4g086190 56.140 57 25 0 19 75 96 152 9.51e-16 73.6
MS.gene64500.t1 MTR_0939s0010 55.172 58 26 0 19 76 65 122 1.08e-15 72.8
MS.gene64500.t1 MTR_8g092460 52.542 59 28 0 19 77 145 203 1.33e-15 74.3
MS.gene64500.t1 MTR_5g008470 55.357 56 25 0 21 76 77 132 1.34e-15 72.4
MS.gene64500.t1 MTR_4g054360 47.143 70 36 1 9 77 114 183 1.59e-15 73.6
MS.gene64500.t1 MTR_6g465420 40.000 100 53 1 18 117 53 145 2.06e-15 73.2
MS.gene64500.t1 MTR_2g015040 54.098 61 25 2 19 77 63 122 2.25e-15 70.9
MS.gene64500.t1 MTR_6g465530 41.000 100 52 1 18 117 32 124 2.56e-15 71.6
MS.gene64500.t1 MTR_6g466000 39.000 100 54 1 18 117 56 148 3.34e-15 72.0
MS.gene64500.t1 MTR_1g090290 47.297 74 32 2 19 85 113 186 3.53e-15 71.2
MS.gene64500.t1 MTR_1g006660 50.000 76 38 0 18 93 46 121 3.54e-15 72.4
MS.gene64500.t1 MTR_6g466130 41.176 85 50 0 18 102 65 149 4.55e-15 71.6
MS.gene64500.t1 MTR_1g070035 48.101 79 35 3 1 74 56 133 4.77e-15 71.6
MS.gene64500.t1 MTR_7g092190 54.098 61 28 0 16 76 27 87 6.48e-15 72.0
MS.gene64500.t1 MTR_1g101600 56.140 57 25 0 18 74 40 96 7.76e-15 70.5
MS.gene64500.t1 MTR_5g082950 55.357 56 25 0 19 74 66 121 7.83e-15 72.4
MS.gene64500.t1 MTR_2g438180 55.000 60 26 1 19 77 14 73 9.05e-15 68.9
MS.gene64500.t1 MTR_2g015050 50.000 70 30 2 7 75 126 191 9.55e-15 71.6
MS.gene64500.t1 MTR_6g465850 41.176 85 50 0 18 102 62 146 1.09e-14 71.6
MS.gene64500.t1 MTR_8g099215 30.178 169 94 4 19 184 107 254 1.11e-14 71.6
MS.gene64500.t1 MTR_7g084370 49.315 73 31 2 19 89 42 110 1.14e-14 71.2
MS.gene64500.t1 MTR_5g008590 61.404 57 22 0 19 75 11 67 1.28e-14 69.7
MS.gene64500.t1 MTR_5g083340 51.724 58 28 0 19 76 85 142 1.46e-14 72.0
MS.gene64500.t1 MTR_7g081815 52.542 59 27 1 19 76 61 119 1.74e-14 69.7
MS.gene64500.t1 MTR_3g090760 39.130 92 54 1 19 110 113 202 1.80e-14 71.6
MS.gene64500.t1 MTR_7g081805 47.222 72 33 2 19 89 61 128 2.03e-14 69.7
MS.gene64500.t1 MTR_5g008540 48.611 72 33 1 5 76 14 81 2.21e-14 66.6
MS.gene64500.t1 MTR_7g096750 54.098 61 25 2 19 77 20 79 2.39e-14 67.8
MS.gene64500.t1 MTR_6g465450 54.386 57 26 0 18 74 53 109 2.91e-14 69.7
MS.gene64500.t1 MTR_7g096700 54.098 61 25 2 19 77 20 79 3.68e-14 67.4
MS.gene64500.t1 MTR_7g081795 49.275 69 29 2 9 76 55 118 4.17e-14 68.6
MS.gene64500.t1 MTR_6g465510 56.140 57 25 0 18 74 32 88 4.31e-14 68.6
MS.gene64500.t1 MTR_5g083330 44.118 68 38 0 9 76 25 92 4.93e-14 69.7
MS.gene64500.t1 MTR_5g010930 37.815 119 63 3 18 126 48 165 6.13e-14 68.6
MS.gene64500.t1 MTR_4g054860 44.286 70 38 1 9 77 121 190 7.14e-14 69.3
MS.gene64500.t1 MTR_6g465690 54.386 57 26 0 18 74 62 118 7.31e-14 68.9
MS.gene64500.t1 MTR_1g070015 50.000 70 34 1 6 74 71 140 7.41e-14 68.2
MS.gene64500.t1 MTR_2g019750 48.214 56 29 0 19 74 50 105 8.69e-14 68.9
MS.gene64500.t1 MTR_1g070045 50.704 71 30 2 5 74 56 122 1.08e-13 67.0
MS.gene64500.t1 MTR_4g100380 47.143 70 36 1 7 75 133 202 1.26e-13 68.2
MS.gene64500.t1 MTR_5g058470 54.430 79 32 2 19 93 96 174 1.46e-13 68.6
MS.gene64500.t1 MTR_6g466020 42.308 78 40 1 18 95 42 114 1.47e-13 66.6
MS.gene64500.t1 MTR_1g074250 49.180 61 29 1 19 77 19 79 1.50e-13 65.5
MS.gene64500.t1 MTR_4g119270 42.857 63 36 0 12 74 46 108 1.60e-13 68.6
MS.gene64500.t1 MTR_5g010940 41.573 89 46 1 18 100 53 141 2.15e-13 67.0
MS.gene64500.t1 MTR_1g070000 56.364 55 23 1 21 74 86 140 2.23e-13 67.0
MS.gene64500.t1 MTR_5g010910 41.573 89 46 1 18 100 48 136 2.61e-13 67.0
MS.gene64500.t1 MTR_4g054740 43.284 67 37 1 12 77 90 156 2.75e-13 67.0
MS.gene64500.t1 MTR_5g009410 57.746 71 28 1 18 86 116 186 2.81e-13 67.8
MS.gene64500.t1 MTR_1g012470 47.222 72 38 0 19 90 7 78 3.03e-13 66.2
MS.gene64500.t1 MTR_4g111915 43.284 67 38 0 10 76 44 110 3.63e-13 64.7
MS.gene64500.t1 MTR_1g070020 54.386 57 25 1 19 74 70 126 3.88e-13 66.2
MS.gene64500.t1 MTR_5g075570 49.123 57 29 0 19 75 124 180 4.01e-13 67.0
MS.gene64500.t1 MTR_7g096810 58.333 60 24 1 19 77 13 72 6.18e-13 63.9
MS.gene64500.t1 MTR_1g069960 56.250 64 27 1 15 77 23 86 6.37e-13 64.3
MS.gene64500.t1 MTR_1g097190 42.667 75 40 2 1 74 7 79 6.41e-13 63.9
MS.gene64500.t1 MTR_4g112490 43.284 67 38 0 10 76 44 110 8.28e-13 65.1
MS.gene64500.t1 MTR_5g009620 47.692 65 34 0 19 83 112 176 1.77e-12 65.5
MS.gene64500.t1 MTR_4g102670 42.105 76 43 1 19 94 15 89 2.08e-12 63.2
MS.gene64500.t1 MTR_1g105400 47.458 59 31 0 2 60 98 156 3.60e-12 65.1
MS.gene64500.t1 MTR_2g016730 47.059 68 34 1 19 84 23 90 3.86e-12 64.7
MS.gene64500.t1 MTR_1g110970 49.153 59 30 0 2 60 80 138 4.08e-12 64.7
MS.gene64500.t1 MTR_8g085960 46.667 60 32 0 15 74 21 80 8.27e-12 62.8
MS.gene64500.t1 MTR_3g107380 54.386 57 26 0 19 75 8 64 8.58e-12 62.4
MS.gene64500.t1 MTR_8g023680 53.846 52 24 0 9 60 106 157 9.82e-12 63.5
MS.gene64500.t1 MTR_7g011630 42.647 68 39 0 7 74 30 97 1.69e-11 63.2
MS.gene64500.t1 MTR_1g043350 48.718 78 35 3 1 74 62 138 2.88e-11 61.2
MS.gene64500.t1 MTR_1g040430 43.243 74 35 3 27 93 119 192 3.62e-11 60.5
MS.gene64500.t1 MTR_8g032610 44.118 68 33 1 7 74 20 82 4.18e-11 61.6
MS.gene64500.t1 MTR_4g082345 37.838 111 53 3 19 113 48 158 4.26e-11 61.6
MS.gene64500.t1 MTR_7g085810 42.623 61 35 0 14 74 25 85 5.00e-11 60.8
MS.gene64500.t1 MTR_1g074370 52.941 68 27 2 9 75 67 130 5.44e-11 60.1
MS.gene64500.t1 MTR_6g029180 48.214 56 29 0 19 74 33 88 5.52e-11 61.2
MS.gene64500.t1 MTR_1g023170 50.746 67 31 1 16 80 37 103 7.36e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64500.t1 AT1G19210 49.275 207 68 6 17 217 10 185 1.61e-52 167
MS.gene64500.t1 AT1G74930 46.818 220 89 6 1 217 1 195 5.87e-49 159
MS.gene64500.t1 AT5G21960 75.294 85 21 0 16 100 4 88 1.93e-42 143
MS.gene64500.t1 AT4G31060 56.667 90 36 2 19 105 27 116 1.13e-29 109
MS.gene64500.t1 AT1G21910 47.872 94 42 1 19 105 50 143 2.15e-23 94.0
MS.gene64500.t1 AT2G22200 60.294 68 26 1 9 76 62 128 5.24e-23 93.6
MS.gene64500.t1 AT4G06746 42.276 123 63 2 1 118 18 137 2.81e-22 89.0
MS.gene64500.t1 AT5G25810 45.263 95 52 0 7 101 24 118 2.98e-22 90.9
MS.gene64500.t1 AT1G01250 51.316 76 37 0 18 93 44 119 4.05e-22 89.7
MS.gene64500.t1 AT4G13620 42.000 100 56 1 2 99 215 314 4.54e-22 93.2
MS.gene64500.t1 AT1G71520 42.991 107 53 3 11 110 6 111 1.53e-21 87.0
MS.gene64500.t1 AT5G67190 47.368 95 45 2 4 98 7 96 2.26e-21 87.8
MS.gene64500.t1 AT2G23340 60.000 65 26 0 11 75 20 84 2.42e-21 87.4
MS.gene64500.t1 AT1G46768 62.069 58 22 0 19 76 31 88 2.57e-21 86.3
MS.gene64500.t1 AT1G46768 62.069 58 22 0 19 76 31 88 3.07e-21 86.3
MS.gene64500.t1 AT1G46768 62.069 58 22 0 19 76 31 88 3.07e-21 86.3
MS.gene64500.t1 AT4G32800 42.000 100 58 0 1 100 1 100 3.72e-21 87.8
MS.gene64500.t1 AT4G36900 64.912 57 20 0 19 75 30 86 4.79e-21 87.0
MS.gene64500.t1 AT1G22190 55.224 67 30 0 10 76 74 140 6.83e-21 88.2
MS.gene64500.t1 AT4G39780 54.412 68 31 0 9 76 83 150 6.86e-21 88.2
MS.gene64500.t1 AT1G78080 60.656 61 24 0 16 76 149 209 7.06e-21 89.4
MS.gene64500.t1 AT1G36060 63.793 58 21 0 18 75 142 199 7.85e-21 89.0
MS.gene64500.t1 AT1G71450 62.712 59 22 0 17 75 22 80 3.11e-20 84.7
MS.gene64500.t1 AT5G11590 44.898 98 51 1 7 101 36 133 4.65e-20 85.5
MS.gene64500.t1 AT3G50260 50.000 78 38 1 19 96 21 97 6.41e-20 82.8
MS.gene64500.t1 AT4G28140 60.000 60 24 0 16 75 140 199 9.25e-20 85.5
MS.gene64500.t1 AT2G44940 50.633 79 39 0 19 97 100 178 1.48e-19 85.1
MS.gene64500.t1 AT5G65130 55.932 59 26 0 18 76 110 168 2.48e-19 84.3
MS.gene64500.t1 AT5G65130 55.932 59 26 0 18 76 112 170 2.69e-19 84.0
MS.gene64500.t1 AT2G20880 55.224 67 30 0 9 75 177 243 2.72e-19 85.1
MS.gene64500.t1 AT1G22810 48.235 85 37 3 17 97 12 93 6.36e-19 80.1
MS.gene64500.t1 AT5G51190 54.412 68 30 1 9 75 62 129 6.41e-19 82.0
MS.gene64500.t1 AT5G47230 54.667 75 32 2 2 75 140 213 8.59e-19 83.2
MS.gene64500.t1 AT2G35700 48.000 75 39 0 19 93 45 119 2.02e-18 80.1
MS.gene64500.t1 AT2G47520 50.769 65 32 0 12 76 43 107 2.30e-18 79.3
MS.gene64500.t1 AT1G03800 53.125 64 30 0 12 75 46 109 3.50e-18 80.5
MS.gene64500.t1 AT3G15210 58.621 58 24 0 19 76 25 82 3.50e-18 80.1
MS.gene64500.t1 AT3G16280 48.684 76 39 0 18 93 60 135 3.59e-18 80.5
MS.gene64500.t1 AT4G25470 48.193 83 43 0 18 100 50 132 3.63e-18 79.7
MS.gene64500.t1 AT2G33710 59.649 57 23 0 19 75 70 126 5.09e-18 79.7
MS.gene64500.t1 AT3G16280 48.052 77 40 0 18 94 78 154 5.88e-18 80.1
MS.gene64500.t1 AT2G33710 59.649 57 23 0 19 75 70 126 5.94e-18 79.3
MS.gene64500.t1 AT1G77640 51.648 91 38 1 19 103 43 133 7.29e-18 79.7
MS.gene64500.t1 AT5G44210 59.649 57 23 0 19 75 33 89 7.97e-18 78.6
MS.gene64500.t1 AT5G25390 55.000 60 27 0 16 75 4 63 9.80e-18 78.2
MS.gene64500.t1 AT5G61600 61.667 60 22 1 19 77 88 147 1.17e-17 79.0
MS.gene64500.t1 AT3G16770 45.946 74 40 0 3 76 63 136 1.59e-17 79.0
MS.gene64500.t1 AT3G60490 45.055 91 47 1 3 93 58 145 1.63e-17 79.0
MS.gene64500.t1 AT4G16750 46.667 75 40 0 19 93 40 114 1.65e-17 77.4
MS.gene64500.t1 AT5G51990 45.783 83 45 0 18 100 53 135 1.73e-17 78.2
MS.gene64500.t1 AT1G50640 59.322 59 24 0 19 77 28 86 2.94e-17 77.8
MS.gene64500.t1 AT2G25820 47.368 76 40 0 18 93 25 100 3.07e-17 77.4
MS.gene64500.t1 AT1G72360 39.024 82 50 0 12 93 18 99 3.97e-17 77.0
MS.gene64500.t1 AT4G27950 48.052 77 40 0 2 78 101 177 4.43e-17 79.0
MS.gene64500.t1 AT5G13330 45.205 73 40 0 3 75 23 95 5.52e-17 76.6
MS.gene64500.t1 AT5G43410 49.231 65 32 1 14 77 10 74 8.36e-17 74.3
MS.gene64500.t1 AT1G72360 39.024 82 50 0 12 93 69 150 8.37e-17 77.0
MS.gene64500.t1 AT1G72360 39.024 82 50 0 12 93 67 148 9.11e-17 77.0
MS.gene64500.t1 AT3G20310 59.322 59 24 0 19 77 27 85 9.44e-17 76.6
MS.gene64500.t1 AT1G15360 54.386 57 26 0 19 75 7 63 1.01e-16 75.5
MS.gene64500.t1 AT1G15360 54.386 57 26 0 19 75 7 63 1.01e-16 75.5
MS.gene64500.t1 AT4G11140 43.590 78 42 1 19 96 87 162 1.18e-16 77.0
MS.gene64500.t1 AT1G28370 50.769 65 32 0 11 75 12 76 1.40e-16 74.3
MS.gene64500.t1 AT1G28360 56.897 58 25 0 19 76 12 69 1.62e-16 74.7
MS.gene64500.t1 AT4G25490 47.368 76 40 0 18 93 47 122 1.94e-16 75.1
MS.gene64500.t1 AT3G57600 35.652 115 70 1 19 129 28 142 2.47e-16 75.9
MS.gene64500.t1 AT1G63030 34.437 151 88 4 18 160 29 176 2.48e-16 74.3
MS.gene64500.t1 AT1G63030 34.437 151 88 4 18 160 29 176 2.48e-16 74.3
MS.gene64500.t1 AT4G25480 46.053 76 41 0 18 93 50 125 2.61e-16 75.1
MS.gene64500.t1 AT5G25190 52.381 63 30 0 19 81 8 70 2.87e-16 73.9
MS.gene64500.t1 AT1G28370 56.140 57 25 0 19 75 58 114 2.88e-16 74.7
MS.gene64500.t1 AT2G44840 57.627 59 24 1 19 76 92 150 4.74e-16 74.3
MS.gene64500.t1 AT2G36450 49.333 75 37 1 18 91 14 88 6.97e-16 73.2
MS.gene64500.t1 AT5G07580 44.681 94 43 3 12 98 103 194 7.22e-16 73.6
MS.gene64500.t1 AT1G33760 40.141 142 73 3 19 160 20 149 7.74e-16 72.8
MS.gene64500.t1 AT1G12980 52.459 61 29 0 14 74 52 112 1.13e-15 74.7
MS.gene64500.t1 AT3G23230 55.000 60 26 1 19 77 20 79 1.15e-15 71.2
MS.gene64500.t1 AT5G61890 54.386 57 26 0 19 75 90 146 1.73e-15 73.2
MS.gene64500.t1 AT3G61630 32.161 199 98 8 19 201 105 282 2.49e-15 73.6
MS.gene64500.t1 AT4G17490 47.297 74 38 1 3 75 121 194 2.60e-15 73.2
MS.gene64500.t1 AT2G46310 50.000 62 31 0 19 80 99 160 3.99e-15 72.8
MS.gene64500.t1 AT3G11020 41.860 86 45 1 19 104 78 158 6.61e-15 72.8
MS.gene64500.t1 AT1G24590 55.357 56 25 0 19 74 58 113 7.29e-15 72.4
MS.gene64500.t1 AT5G25390 53.333 60 25 1 16 75 4 60 7.73e-15 70.5
MS.gene64500.t1 AT1G12610 42.169 83 48 0 18 100 29 111 1.46e-14 70.1
MS.gene64500.t1 AT5G18560 39.437 71 43 0 11 81 47 117 1.51e-14 71.6
MS.gene64500.t1 AT5G47220 50.725 69 32 2 9 75 106 174 1.85e-14 70.5
MS.gene64500.t1 AT4G23750 46.667 75 40 0 4 78 107 181 2.42e-14 71.2
MS.gene64500.t1 AT4G23750 46.667 75 40 0 4 78 107 181 2.42e-14 71.2
MS.gene64500.t1 AT3G23240 49.275 69 32 2 8 74 71 138 2.86e-14 69.3
MS.gene64500.t1 AT1G28160 51.786 56 27 0 19 74 39 94 5.36e-14 68.9
MS.gene64500.t1 AT1G75490 50.000 60 30 0 16 75 39 98 5.70e-14 68.6
MS.gene64500.t1 AT5G13910 50.000 56 28 0 19 74 20 75 5.86e-14 68.6
MS.gene64500.t1 AT4G17500 55.172 58 25 1 19 75 148 205 8.26e-14 68.9
MS.gene64500.t1 AT1G64380 60.294 68 25 1 18 83 135 202 8.30e-14 69.7
MS.gene64500.t1 AT5G53290 53.571 56 26 0 19 74 125 180 8.51e-14 69.7
MS.gene64500.t1 AT2G31230 55.932 59 23 2 19 75 86 143 1.06e-13 68.2
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 14 70 1.53e-13 68.2
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 14 70 1.53e-13 68.2
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 14 70 1.53e-13 68.2
MS.gene64500.t1 AT1G12890 43.421 76 41 1 1 74 1 76 1.58e-13 67.4
MS.gene64500.t1 AT5G19790 41.250 80 45 1 3 80 4 83 1.79e-13 67.8
MS.gene64500.t1 AT5G05410 50.877 57 28 0 19 75 79 135 2.96e-13 67.8
MS.gene64500.t1 AT5G05410 50.877 57 28 0 19 75 79 135 3.13e-13 67.8
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 72 128 3.69e-13 67.4
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 72 128 4.03e-13 67.8
MS.gene64500.t1 AT1G44830 50.602 83 33 2 19 93 35 117 4.20e-13 66.2
MS.gene64500.t1 AT2G40340 49.123 57 29 0 19 75 79 135 4.85e-13 67.4
MS.gene64500.t1 AT1G77200 48.000 75 39 0 19 93 43 117 7.61e-13 65.9
MS.gene64500.t1 AT5G50080 52.174 69 33 0 9 77 76 144 2.18e-12 64.3
MS.gene64500.t1 AT5G11190 54.386 57 26 0 19 75 7 63 2.27e-12 63.5
MS.gene64500.t1 AT5G50080 52.174 69 33 0 9 77 67 135 2.75e-12 63.9
MS.gene64500.t1 AT5G18450 47.458 59 31 0 16 74 31 89 7.49e-12 63.9
MS.gene64500.t1 AT5G07310 54.386 57 26 0 19 75 92 148 8.09e-12 63.2
MS.gene64500.t1 AT5G64750 41.860 86 46 2 25 110 191 272 1.79e-11 63.2
MS.gene64500.t1 AT1G43160 57.627 59 25 0 19 77 61 119 1.87e-11 61.2
MS.gene64500.t1 AT4G34410 56.140 57 25 0 19 75 136 192 2.90e-11 61.6
MS.gene64500.t1 AT1G06160 57.377 61 23 2 19 77 82 141 2.91e-11 61.6
MS.gene64500.t1 AT2G40350 45.000 60 33 0 19 78 74 133 4.63e-11 59.7
MS.gene64500.t1 AT2G40350 45.000 60 33 0 19 78 67 126 5.48e-11 59.3
MS.gene64500.t1 AT1G04370 49.231 65 32 1 14 77 15 79 7.15e-11 58.5
MS.gene64500.t1 AT3G23220 47.297 74 36 2 6 77 1 73 9.23e-11 58.2
MS.gene64500.t1 AT1G53170 58.929 56 23 0 19 74 31 86 9.71e-11 59.3

Find 66 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATGCCAATTTATGATTA+TGG 0.209145 2.4:+47209747 MS.gene64500:CDS
TCTTCTCCATAATCATAAAT+TGG 0.265668 2.4:-47209753 None:intergenic
GCAATGTTTGGTGGATCATT+AGG 0.282012 2.4:-47209393 None:intergenic
TAATCATAAATTGGCATATC+TGG 0.282181 2.4:-47209744 None:intergenic
CAAACAGCCGTCAGAGAATA+TGG 0.308783 2.4:+47209280 MS.gene64500:CDS
GAATCACTTCGTTCTGTTGT+AGG 0.310951 2.4:-47209195 None:intergenic
TCTTTAGAAGTTCCACAAAA+AGG 0.317694 2.4:-47209805 None:intergenic
TCCGATTTGTTAGCGGGAAA+CGG 0.318972 2.4:+47209642 MS.gene64500:CDS
GATCTTCCTCCAGCAATGTT+TGG 0.353477 2.4:-47209405 None:intergenic
TTGTTAGCGGGAAACGGGTC+GGG 0.358026 2.4:+47209648 MS.gene64500:CDS
GGGTGTCCATAATGAGAATT+CGG 0.363017 2.4:+47209476 MS.gene64500:CDS
GTCGACCCGAATTCTCATTA+TGG 0.363936 2.4:-47209482 None:intergenic
GAGATTTGAACCGGATTACT+TGG 0.369841 2.4:+47209671 MS.gene64500:CDS
CATATTCTCTGACGGCTGTT+TGG 0.375299 2.4:-47209279 None:intergenic
CAATGTTTGGTGGATCATTA+GGG 0.378711 2.4:-47209392 None:intergenic
GAAAGCACGCGCCGCCTTCT+CGG 0.381143 2.4:-47209322 None:intergenic
CCGATTTGTTAGCGGGAAAC+GGG 0.390828 2.4:+47209643 MS.gene64500:CDS
ATACTCCACAACGACATTAT+CGG 0.393238 2.4:-47209505 None:intergenic
AATGATCCACCAAACATTGC+TGG 0.416850 2.4:+47209396 MS.gene64500:CDS
TGATTATGGAGAAGAGAACT+TGG 0.429098 2.4:+47209761 MS.gene64500:CDS
GACACCCGAATTTGCAAAAC+GGG 0.432378 2.4:-47209460 None:intergenic
CCCGTTTCCCGCTAACAAAT+CGG 0.433144 2.4:-47209643 None:intergenic
TACTCCACAACGACATTATC+GGG 0.440838 2.4:-47209504 None:intergenic
GTCGGAGGGGACTGCATTGT+TGG 0.454523 2.4:+47209536 MS.gene64500:CDS
GTGGAGTACGGAAGAGGAAG+TGG 0.457959 2.4:+47209229 MS.gene64500:CDS
CCCGGAAAACCCAAGTAATC+CGG 0.461319 2.4:-47209681 None:intergenic
GGTGTCCATAATGAGAATTC+GGG 0.469862 2.4:+47209477 MS.gene64500:CDS
TATGGAGAAGAGAACTTGGA+TGG 0.471055 2.4:+47209765 MS.gene64500:CDS
AGAGAACTTGGATGGGTTGG+TGG 0.486151 2.4:+47209773 MS.gene64500:CDS
CTTCCTCCAGCAATGTTTGG+TGG 0.488050 2.4:-47209402 None:intergenic
GGGGACTGCATTGTTGGCTA+TGG 0.500549 2.4:+47209542 MS.gene64500:CDS
TGTTAGCGGGAAACGGGTCG+GGG 0.503574 2.4:+47209649 MS.gene64500:CDS
ATTGTGATTCAAAGCAAAAC+GGG 0.505537 2.4:+47209613 MS.gene64500:CDS
AGAAGAGAACTTGGATGGGT+TGG 0.508780 2.4:+47209770 MS.gene64500:CDS
GATTGTGATTCAAAGCAAAA+CGG 0.513433 2.4:+47209612 MS.gene64500:CDS
TCCGGCTATGTCTGATGCAA+CGG 0.516909 2.4:+47209581 MS.gene64500:CDS
ATGGAGAAGAGAACTTGGAT+GGG 0.518079 2.4:+47209766 MS.gene64500:CDS
CGGGTCGGGGAGATTTGAAC+CGG 0.519604 2.4:+47209662 MS.gene64500:CDS
GAGTATGAGTCGTCGTCGGA+GGG 0.524202 2.4:+47209522 MS.gene64500:CDS
GGAATCTGAACCATTGTCTC+CGG 0.535564 2.4:+47209563 MS.gene64500:CDS
CATCATTGTACCGTGGAGTA+CGG 0.535579 2.4:+47209217 MS.gene64500:CDS
TTTGTTAGCGGGAAACGGGT+CGG 0.541934 2.4:+47209647 MS.gene64500:CDS
GGACACCCGAATTTGCAAAA+CGG 0.542959 2.4:-47209461 None:intergenic
TGGAGTACGGAAGAGGAAGT+GGG 0.564589 2.4:+47209230 MS.gene64500:CDS
TTACGACTCCGCCGAGAAGG+CGG 0.571946 2.4:+47209311 MS.gene64500:CDS
TTCTTACGACTCCGCCGAGA+AGG 0.575245 2.4:+47209308 MS.gene64500:CDS
AGATTTGAACCGGATTACTT+GGG 0.575504 2.4:+47209672 MS.gene64500:CDS
TGTACCGTGGAGTACGGAAG+AGG 0.578367 2.4:+47209223 MS.gene64500:CDS
GGAGTATGAGTCGTCGTCGG+AGG 0.586060 2.4:+47209521 MS.gene64500:CDS
GCAGCAGCTTGAATCTCAGA+AGG 0.595007 2.4:-47209435 None:intergenic
AACCTAACCATATTCTCTGA+CGG 0.602361 2.4:-47209287 None:intergenic
ACCGTTGCATCAGACATAGC+CGG 0.603276 2.4:-47209582 None:intergenic
AAACATGGTGAAGTCGAATG+TGG 0.606444 2.4:+47209167 None:intergenic
AGCCGTCAGAGAATATGGTT+AGG 0.607421 2.4:+47209285 MS.gene64500:CDS
ACTTCCTCTTCCGTACTCCA+CGG 0.609797 2.4:-47209227 None:intergenic
TCAGACATAGCCGGAGACAA+TGG 0.611710 2.4:-47209573 None:intergenic
CCACCAAAATCATCAAAACC+CGG 0.619494 2.4:-47209699 None:intergenic
GGAGTACGGAAGAGGAAGTG+GGG 0.621757 2.4:+47209231 MS.gene64500:CDS
AGCACGCGCCGCCTTCTCGG+CGG 0.630991 2.4:-47209319 None:intergenic
GGCGGCGCGTGCTTTCGACG+CGG 0.640878 2.4:+47209329 MS.gene64500:CDS
AGTATGAGTCGTCGTCGGAG+GGG 0.646464 2.4:+47209523 MS.gene64500:CDS
TCGACCCGATAATGTCGTTG+TGG 0.648101 2.4:+47209500 MS.gene64500:CDS
TGTGGAGTATGAGTCGTCGT+CGG 0.664326 2.4:+47209518 MS.gene64500:CDS
GAGTACGGAAGAGGAAGTGG+GGG 0.665765 2.4:+47209232 MS.gene64500:CDS
GATCCACCAAACATTGCTGG+AGG 0.681084 2.4:+47209399 MS.gene64500:CDS
AGTGATTCATCATTGTACCG+TGG 0.731218 2.4:+47209210 MS.gene64500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.4 gene 47209171 47209824 47209171 ID=MS.gene64500
chr2.4 mRNA 47209171 47209824 47209171 ID=MS.gene64500.t1;Parent=MS.gene64500
chr2.4 exon 47209171 47209824 47209171 ID=MS.gene64500.t1.exon1;Parent=MS.gene64500.t1
chr2.4 CDS 47209171 47209824 47209171 ID=cds.MS.gene64500.t1;Parent=MS.gene64500.t1
Gene Sequence

>MS.gene64500

ATGGTGAAGTCGAATGTGGAAAAACCTACAACAGAACGAAGTGATTCATCATTGTACCGTGGAGTACGGAAGAGGAAGTGGGGGAAGTATGTGTCGGAGATTAGATTACCAAACAGCCGTCAGAGAATATGGTTAGGTTCTTACGACTCCGCCGAGAAGGCGGCGCGTGCTTTCGACGCGGCGATGTTTTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTCCCTAATGATCCACCAAACATTGCTGGAGGAAGATCAATGACTCCTTCTGAGATTCAAGCTGCTGCAGCCCGTTTTGCAAATTCGGGTGTCCATAATGAGAATTCGGGTCGACCCGATAATGTCGTTGTGGAGTATGAGTCGTCGTCGGAGGGGACTGCATTGTTGGCTATGGAATCTGAACCATTGTCTCCGGCTATGTCTGATGCAACGGTTCAAACAGATTGTGATTCAAAGCAAAACGGGTTGTTTTCCGATTTGTTAGCGGGAAACGGGTCGGGGAGATTTGAACCGGATTACTTGGGTTTTCCGGGTTTTGATGATTTTGGTGGTGAATTGACTGACTTCTATGTGCCAGATATGCCAATTTATGATTATGGAGAAGAGAACTTGGATGGGTTGGTGGTTCATGACTCCTTTTTGTGGAACTTCTAA
Protein sequence

>MS.gene64500.t1

MVKSNVEKPTTERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPNDPPNIAGGRSMTPSEIQAAAARFANSGVHNENSGRPDNVVVEYESSSEGTALLAMESEPLSPAMSDATVQTDCDSKQNGLFSDLLAGNGSGRFEPDYLGFPGFDDFGGELTDFYVPDMPIYDYGEENLDGLVVHDSFLWNF