Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64858.t1 | XP_003612320.1 | 98.7 | 922 | 12 | 0 | 1 | 922 | 1 | 922 | 3.90E-228 | 801.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64858.t1 | Q8S2T0 | 54.7 | 773 | 331 | 6 | 163 | 922 | 22 | 788 | 3.3e-50 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64858.t1 | G7K011 | 98.7 | 922 | 12 | 0 | 1 | 922 | 1 | 922 | 2.8e-228 | 801.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64858 | MS.gene02723 | PPI |
| MS.gene058237 | MS.gene64858 | PPI |
| MS.gene64858 | MS.gene55989 | PPI |
| MS.gene64858 | MS.gene047988 | PPI |
| MS.gene64858 | MS.gene070223 | PPI |
| MS.gene64858 | MS.gene061266 | PPI |
| MS.gene64858 | MS.gene61712 | PPI |
| MS.gene008939 | MS.gene64858 | PPI |
| MS.gene00155 | MS.gene64858 | PPI |
| MS.gene64858 | MS.gene027794 | PPI |
| MS.gene64858 | MS.gene046436 | PPI |
| MS.gene041802 | MS.gene64858 | PPI |
| MS.gene64858 | MS.gene065220 | PPI |
| MS.gene02153 | MS.gene64858 | PPI |
| MS.gene069114 | MS.gene64858 | PPI |
| MS.gene070689 | MS.gene64858 | PPI |
| MS.gene00013 | MS.gene64858 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64858.t1 | MTR_5g023770 | 98.590 | 922 | 13 | 0 | 1 | 922 | 1 | 922 | 0.0 | 1817 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64858.t1 | AT5G66030 | 63.260 | 773 | 265 | 6 | 163 | 922 | 22 | 788 | 0.0 | 858 |
| MS.gene64858.t1 | AT5G66030 | 61.979 | 768 | 260 | 5 | 163 | 922 | 22 | 765 | 0.0 | 829 |
| MS.gene64858.t1 | AT5G66030 | 62.781 | 712 | 253 | 4 | 163 | 866 | 22 | 729 | 0.0 | 774 |
| MS.gene64858.t1 | AT5G66030 | 60.909 | 660 | 246 | 4 | 163 | 814 | 22 | 677 | 0.0 | 700 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCTCATTTACTTAA+TGG | 0.104508 | 5.3:+13680127 | MS.gene64858:CDS |
| TTAATATGTACTTCTTATTT+TGG | 0.160688 | 5.3:-13674581 | None:intergenic |
| CACTTTCATCCTTCCTTTGC+TGG | 0.174319 | 5.3:-13668641 | None:intergenic |
| GTGCTAGCTCTTCCTCTCTT+TGG | 0.174977 | 5.3:-13678133 | None:intergenic |
| AGCTTCTTCGGATGCAATTC+TGG | 0.218013 | 5.3:-13669258 | None:intergenic |
| GTAAATATTGTATTGGAAAA+TGG | 0.236129 | 5.3:+13668666 | MS.gene64858:CDS |
| ACCAACTTCTTTCTGTATAC+TGG | 0.244185 | 5.3:-13669147 | None:intergenic |
| TGCTAGCTCTTCCTCTCTTT+GGG | 0.250441 | 5.3:-13678132 | None:intergenic |
| ATGTACAGCCTTGCATAAAT+TGG | 0.254936 | 5.3:+13677719 | MS.gene64858:intron |
| AGAATTCATTCTGAGATTTC+AGG | 0.260515 | 5.3:-13669073 | None:intergenic |
| GAAGTATTGCTACCGGTTAT+TGG | 0.271288 | 5.3:+13679475 | MS.gene64858:CDS |
| GACTCAAGAGCCTCTTCTTT+AGG | 0.311266 | 5.3:-13671520 | None:intergenic |
| TCTGCAGAATATGGAGAGTT+TGG | 0.320480 | 5.3:+13672741 | MS.gene64858:intron |
| TGCAGTTGCTCTCGGCAATT+TGG | 0.322122 | 5.3:-13674537 | None:intergenic |
| ATTAGTTAGAACCTCTTCTT+TGG | 0.331826 | 5.3:-13674736 | None:intergenic |
| GAGATGGAGGCAGCATCAAC+TGG | 0.349106 | 5.3:+13673470 | MS.gene64858:CDS |
| AAGTATTGCTACCGGTTATT+GGG | 0.352793 | 5.3:+13679476 | MS.gene64858:CDS |
| AAGCTGGGAGGCTGCATCTC+AGG | 0.355343 | 5.3:+13674498 | MS.gene64858:CDS |
| CATTGCTAAACCCCTCAATC+TGG | 0.360562 | 5.3:-13669103 | None:intergenic |
| GAGATACCATTGAGGATTTA+CGG | 0.361062 | 5.3:+13671485 | MS.gene64858:CDS |
| CTCTCTGAGCAGCTTGTAGA+AGG | 0.379695 | 5.3:+13669332 | MS.gene64858:CDS |
| ATTCACCTGCAGTGAAGAAA+TGG | 0.390871 | 5.3:-13672812 | None:intergenic |
| GATCCTGAAGAGTCACTTGC+AGG | 0.391180 | 5.3:-13680087 | None:intergenic |
| GCAATTGTCACTTGCAGAAA+AGG | 0.391238 | 5.3:+13671546 | MS.gene64858:CDS |
| ACATCTGACAAATGCTCCTC+TGG | 0.400663 | 5.3:-13668846 | None:intergenic |
| AACGAAGGTCCGACTGATAC+TGG | 0.405806 | 5.3:+13668786 | MS.gene64858:CDS |
| AGAAGATATGCAGAAGGAAT+TGG | 0.406447 | 5.3:+13677127 | MS.gene64858:CDS |
| GCAAGTGACTCTTCAGGATC+TGG | 0.408810 | 5.3:+13680090 | MS.gene64858:CDS |
| AAGGTGCTTCAAAGCTTCTT+CGG | 0.415250 | 5.3:-13669270 | None:intergenic |
| CCATCTGACAAATGCTCCTC+GGG | 0.415545 | 5.3:-13668762 | None:intergenic |
| AACTTGACGCCAAGTTGAAT+AGG | 0.415765 | 5.3:+13669525 | MS.gene64858:CDS |
| GCATCTGGTGAAGGTGATAC+TGG | 0.418417 | 5.3:+13668549 | MS.gene64858:CDS |
| ATCTTAAAGCTTCTTGAGAC+AGG | 0.425588 | 5.3:+13679330 | MS.gene64858:CDS |
| TTGTTGCAATGCTGACTGTT+GGG | 0.429814 | 5.3:-13670066 | None:intergenic |
| ATCTCTCATACTGAGGATCT+TGG | 0.430541 | 5.3:-13674697 | None:intergenic |
| CCTAAAAGAGAAAGAGGAAT+GGG | 0.431476 | 5.3:+13676941 | MS.gene64858:CDS |
| AAGTTGGTGGTATGGAAGAC+GGG | 0.432535 | 5.3:+13669162 | MS.gene64858:CDS |
| CTCTGATGGAAATGAAGGTT+CGG | 0.436683 | 5.3:+13669013 | MS.gene64858:CDS |
| CATCTGAGTACGCAATTTGA+AGG | 0.437273 | 5.3:-13669289 | None:intergenic |
| AACAAGAAGTCGATGGCATC+TGG | 0.438022 | 5.3:+13668534 | MS.gene64858:CDS |
| AGTTGAATAGGCTTCACAAA+AGG | 0.438247 | 5.3:+13669537 | MS.gene64858:CDS |
| GGAGATTTCTCACGTAAAAC+AGG | 0.441710 | 5.3:+13673535 | MS.gene64858:CDS |
| TCCATCTGACAAATGCTCCT+CGG | 0.447011 | 5.3:-13668763 | None:intergenic |
| AACGAAGGTCTGGCTGATAC+TGG | 0.448934 | 5.3:+13668870 | MS.gene64858:CDS |
| TCTTTCCATGTTGCGAAGCT+CGG | 0.452550 | 5.3:-13679262 | None:intergenic |
| ACATGGAAAGAGCAAACAAA+AGG | 0.455622 | 5.3:+13679274 | MS.gene64858:CDS |
| CAATGTTGAGAGTGTAAGTA+GGG | 0.455689 | 5.3:+13669121 | MS.gene64858:CDS |
| AATGAAGGTCCGGCTGATAC+TGG | 0.456678 | 5.3:+13668702 | MS.gene64858:CDS |
| TTGTGTAGCTCAAAATAAGT+TGG | 0.457150 | 5.3:+13669466 | MS.gene64858:intron |
| TGAGTCCATTTCTTCACTGC+AGG | 0.458180 | 5.3:+13672807 | MS.gene64858:CDS |
| AAGCTGCTCAGAGAGATCTT+TGG | 0.462974 | 5.3:-13669324 | None:intergenic |
| TGAAAGCCATGGATGGTGAT+AGG | 0.465393 | 5.3:+13670126 | MS.gene64858:CDS |
| GTCAGATGTAAACGAAGGTC+TGG | 0.471273 | 5.3:+13668860 | MS.gene64858:CDS |
| ATGAATCAGCAAAGCAAAGA+TGG | 0.471482 | 5.3:+13668957 | MS.gene64858:CDS |
| GTCACTTGCAGAAAAGGAAC+AGG | 0.472701 | 5.3:+13671552 | MS.gene64858:CDS |
| TCACGATGAGCTTCTGCAAA+TGG | 0.473971 | 5.3:+13669043 | MS.gene64858:CDS |
| AGTCCTGCAAGTGACTCTTC+AGG | 0.474680 | 5.3:+13680084 | MS.gene64858:CDS |
| GAAGAGTCACTTGCAGGACT+TGG | 0.475110 | 5.3:-13680081 | None:intergenic |
| TGAAGCAGCATCCCAATAAC+CGG | 0.476040 | 5.3:-13679487 | None:intergenic |
| ATCTGATGGAAATGAAGGTC+CGG | 0.480640 | 5.3:+13668692 | MS.gene64858:CDS |
| TCAATGATGCTGTATCTGAT+AGG | 0.481116 | 5.3:+13672773 | MS.gene64858:CDS |
| AGATGCCGAACATCAAATTC+TGG | 0.481340 | 5.3:+13677764 | MS.gene64858:CDS |
| GAATCAGACAAATGCTCCTC+AGG | 0.483026 | 5.3:-13668930 | None:intergenic |
| CGATTCTCTGATGGAAATGA+AGG | 0.483413 | 5.3:+13669008 | MS.gene64858:CDS |
| ACAGAAAGAAGTTGGTGGTA+TGG | 0.483650 | 5.3:+13669154 | MS.gene64858:CDS |
| CTATACCAGAATTTGATGTT+CGG | 0.489165 | 5.3:-13677769 | None:intergenic |
| TTCTTGAAATCCCAGATTGA+GGG | 0.490247 | 5.3:+13669092 | MS.gene64858:CDS |
| GGCTTATCTGATGGAAATGA+AGG | 0.492082 | 5.3:+13668687 | MS.gene64858:CDS |
| GAAGTTGGTGGTATGGAAGA+CGG | 0.492339 | 5.3:+13669161 | MS.gene64858:CDS |
| GTTATCGATAACAGAAGAAA+GGG | 0.494196 | 5.3:+13676648 | MS.gene64858:CDS |
| AAGTAATACAAATCTTGTAT+TGG | 0.501590 | 5.3:+13668980 | MS.gene64858:CDS |
| AGGTGATACTGGTGGAAAGA+TGG | 0.501992 | 5.3:+13668560 | MS.gene64858:CDS |
| GCTCTCTGCTAAACATCAAA+AGG | 0.502185 | 5.3:+13672536 | MS.gene64858:CDS |
| GCAGAATATGGAGAGTTTGG+AGG | 0.504901 | 5.3:+13672744 | MS.gene64858:intron |
| TGTTATCGATAACAGAAGAA+AGG | 0.505115 | 5.3:+13676647 | MS.gene64858:CDS |
| CTTGTTGCAATGCTGACTGT+TGG | 0.506458 | 5.3:-13670067 | None:intergenic |
| TTCTTTCTCATTATTAGCCA+TGG | 0.506905 | 5.3:-13676698 | None:intergenic |
| GCTAATTCAGGAAGAAATTG+AGG | 0.508051 | 5.3:+13678266 | MS.gene64858:intron |
| AAATCGTCTCCACAGCCAAC+AGG | 0.508271 | 5.3:+13678302 | MS.gene64858:CDS |
| AGAATCTAGAATTGCAGAGA+TGG | 0.511223 | 5.3:+13673454 | MS.gene64858:CDS |
| GTTGAATAGGCTTCACAAAA+GGG | 0.513691 | 5.3:+13669538 | MS.gene64858:CDS |
| GCAATGTTGAGAGTGTAAGT+AGG | 0.514073 | 5.3:+13669120 | MS.gene64858:CDS |
| CTCGGCAGATTCATTTAACT+CGG | 0.515814 | 5.3:-13670033 | None:intergenic |
| TTGGATAATCGATTCTCTGA+TGG | 0.516209 | 5.3:+13668999 | MS.gene64858:CDS |
| ACGCATTCAAGAAGTTCAAA+AGG | 0.518457 | 5.3:+13669568 | MS.gene64858:CDS |
| TCAACACCTAAAAGAGAAAG+AGG | 0.519235 | 5.3:+13676935 | MS.gene64858:CDS |
| TCATATCAGAATCAGACAAA+TGG | 0.519407 | 5.3:-13668617 | None:intergenic |
| AAAATGTCAAGCAGCAGATA+AGG | 0.521193 | 5.3:+13676880 | MS.gene64858:CDS |
| TGGCAGATTGAAGATCTTGA+AGG | 0.522529 | 5.3:-13676678 | None:intergenic |
| AAGTGATGTAAATATTGTAT+TGG | 0.523227 | 5.3:+13668659 | MS.gene64858:CDS |
| GAGTCACTTGCAGGACTTGG+TGG | 0.523677 | 5.3:-13680078 | None:intergenic |
| ATTCTTGAAATCCCAGATTG+AGG | 0.523848 | 5.3:+13669091 | MS.gene64858:CDS |
| TTGTTGCCTATCACCATCCA+TGG | 0.524711 | 5.3:-13670132 | None:intergenic |
| TTGTGAAAGAACTTCGAGAA+AGG | 0.525399 | 5.3:+13669195 | MS.gene64858:CDS |
| CCCGAGGAGCATTTGTCAGA+TGG | 0.527662 | 5.3:+13668762 | MS.gene64858:CDS |
| AATTTGATGTTCGGCATCTG+AGG | 0.535891 | 5.3:-13677760 | None:intergenic |
| TTGGAAAATGGCTTATCTGA+TGG | 0.538678 | 5.3:+13668678 | MS.gene64858:CDS |
| AACAAGGAAACAAGCAAATG+AGG | 0.539173 | 5.3:+13670100 | MS.gene64858:CDS |
| ATGGCCAGGTCAGCTTGAAT+CGG | 0.541503 | 5.3:+13674659 | MS.gene64858:intron |
| TCCAGTATACAGAAAGAAGT+TGG | 0.542727 | 5.3:+13669146 | MS.gene64858:CDS |
| TGCACGTATGCAGTTGCTCT+CGG | 0.543333 | 5.3:-13674545 | None:intergenic |
| AGCACGGCTCAGAGCAGCCA+TGG | 0.546795 | 5.3:+13673499 | MS.gene64858:CDS |
| TTTGTGAAGCCTATTCAACT+TGG | 0.549790 | 5.3:-13669534 | None:intergenic |
| CATCAACTGGGGAAGCAGCA+CGG | 0.549796 | 5.3:+13673483 | MS.gene64858:CDS |
| ATTGCTAAACCCCTCAATCT+GGG | 0.551982 | 5.3:-13669102 | None:intergenic |
| TATGAGAGATTCTGAACTGT+TGG | 0.554134 | 5.3:+13674710 | MS.gene64858:CDS |
| TGCTGTATCTGATAGGAGAA+AGG | 0.558520 | 5.3:+13672780 | MS.gene64858:CDS |
| AGACATATACCTGTTGGCTG+TGG | 0.558875 | 5.3:-13678311 | None:intergenic |
| CATGGAAAGAGCAAACAAAA+GGG | 0.558981 | 5.3:+13679275 | MS.gene64858:CDS |
| ACATGCACTTCTTCAAAAGA+AGG | 0.560434 | 5.3:+13676454 | MS.gene64858:CDS |
| GTGGTCTTGATTGAAGAGAC+TGG | 0.561811 | 5.3:-13677385 | None:intergenic |
| AGCAGCCATGGAAAGTGTGA+AGG | 0.566751 | 5.3:+13673511 | MS.gene64858:CDS |
| AGTTGAATCCAATTTATGCA+AGG | 0.567595 | 5.3:-13677727 | None:intergenic |
| TGAACGCCGTAAATCCTCAA+TGG | 0.567971 | 5.3:-13671491 | None:intergenic |
| AACAAGAGTTAGAGCGAACA+AGG | 0.568118 | 5.3:+13670084 | MS.gene64858:CDS |
| ACCTAAAAGAGAAAGAGGAA+TGG | 0.568959 | 5.3:+13676940 | MS.gene64858:CDS |
| AGATGGAGGCAGCATCAACT+GGG | 0.573919 | 5.3:+13673471 | MS.gene64858:CDS |
| ATTTGATGTTCGGCATCTGA+GGG | 0.574149 | 5.3:-13677759 | None:intergenic |
| TGCAGATCAGCAGTCTTGAG+AGG | 0.575989 | 5.3:+13676405 | MS.gene64858:intron |
| ATCTAGAATTGCAGAGATGG+AGG | 0.576609 | 5.3:+13673457 | MS.gene64858:CDS |
| AAAGTCCGAGCTTCGCAACA+TGG | 0.577308 | 5.3:+13679257 | MS.gene64858:CDS |
| GCAGCCATGGAAAGTGTGAA+GGG | 0.580624 | 5.3:+13673512 | MS.gene64858:CDS |
| AAGTCGATGGCATCTGGTGA+AGG | 0.582381 | 5.3:+13668540 | MS.gene64858:CDS |
| TTCAAAATGTAGAAGAAACA+TGG | 0.582714 | 5.3:+13676973 | MS.gene64858:CDS |
| CTGTTGGGATGATGCTCGCT+CGG | 0.584029 | 5.3:-13670051 | None:intergenic |
| TCTATCAGCAAGATCATGAA+AGG | 0.585507 | 5.3:-13677303 | None:intergenic |
| ATGAGAAAGAACTTGCAGAA+AGG | 0.587318 | 5.3:+13676710 | MS.gene64858:CDS |
| TCTTGAAATCCCAGATTGAG+GGG | 0.593814 | 5.3:+13669093 | MS.gene64858:CDS |
| GCAGATCAGCAGTCTTGAGA+GGG | 0.593969 | 5.3:+13676406 | MS.gene64858:intron |
| TTTCTCGAAGTTCTTTCACA+AGG | 0.595185 | 5.3:-13669193 | None:intergenic |
| TTCATTGCAACCTAAAGAAG+AGG | 0.595340 | 5.3:+13671510 | MS.gene64858:CDS |
| GGCTGATACTGGTGGAACGA+TGG | 0.597134 | 5.3:+13668881 | MS.gene64858:CDS |
| AGTCACTTGCAGGACTTGGT+GGG | 0.599280 | 5.3:-13680077 | None:intergenic |
| TGATATGAACCAGCAAAGGA+AGG | 0.603160 | 5.3:+13668632 | MS.gene64858:CDS |
| GCCAGGTCAGCTTGAATCGG+AGG | 0.605175 | 5.3:+13674662 | MS.gene64858:intron |
| CAAAATGATAATTATAACAC+AGG | 0.605324 | 5.3:+13677541 | MS.gene64858:CDS |
| GACTGATACTGGTGGAACGA+TGG | 0.605997 | 5.3:+13668797 | MS.gene64858:CDS |
| TCAAGATCTTCAATCTGCCA+TGG | 0.606490 | 5.3:+13676681 | MS.gene64858:CDS |
| ACAGTTCCACCAGTATCAGC+CGG | 0.609423 | 5.3:-13668711 | None:intergenic |
| AAATGAGGCATTGAAAGCCA+TGG | 0.613307 | 5.3:+13670115 | MS.gene64858:CDS |
| TGAAGTGGAAGTATTGCTAC+CGG | 0.619590 | 5.3:+13679468 | MS.gene64858:CDS |
| GTTCAGAATCTCTCATACTG+AGG | 0.620292 | 5.3:-13674704 | None:intergenic |
| ATTCTGATATGAACCAGCAA+AGG | 0.620546 | 5.3:+13668628 | MS.gene64858:CDS |
| GAAGGTCTGGCTGATACTGG+TGG | 0.621730 | 5.3:+13668873 | MS.gene64858:CDS |
| ACTGTTGGCTGCCAAAGAAG+AGG | 0.621928 | 5.3:+13674725 | MS.gene64858:CDS |
| GAAGGTCCGGCTGATACTGG+TGG | 0.623619 | 5.3:+13668705 | MS.gene64858:CDS |
| GAAAGAGCAAACAAAAGGGA+AGG | 0.623906 | 5.3:+13679279 | MS.gene64858:CDS |
| GGCTGATACTGGTGGAACTG+TGG | 0.625396 | 5.3:+13668713 | MS.gene64858:CDS |
| ATCGTTCCACCAGTATCAGT+CGG | 0.626403 | 5.3:-13668795 | None:intergenic |
| GCTGCTTCAGTTTAGTCCAG+AGG | 0.627685 | 5.3:+13679501 | MS.gene64858:CDS |
| TCTTGCTGATAGAATGATTG+AGG | 0.629183 | 5.3:+13677313 | MS.gene64858:CDS |
| CAGCCATGGAAAGTGTGAAG+GGG | 0.629398 | 5.3:+13673513 | MS.gene64858:CDS |
| AGGATTGCTTCGAACTGCCG+AGG | 0.631572 | 5.3:+13672488 | MS.gene64858:CDS |
| GTACTCAGATGCAGAAGCAA+AGG | 0.633740 | 5.3:+13669301 | MS.gene64858:CDS |
| TGCTGCAGAAGATATGCAGA+AGG | 0.633937 | 5.3:+13677121 | MS.gene64858:CDS |
| AGAATCTTGAGAAAAGAGAG+AGG | 0.634025 | 5.3:-13680113 | None:intergenic |
| AGTATACAGAAAGAAGTTGG+TGG | 0.636772 | 5.3:+13669149 | MS.gene64858:CDS |
| CAGACTTCGAGATACCATTG+AGG | 0.641772 | 5.3:+13671477 | MS.gene64858:intron |
| TGAACAACTCAAAGCTCTTG+AGG | 0.642235 | 5.3:+13676505 | MS.gene64858:CDS |
| GCTTCAGTTTAGTCCAGAGG+AGG | 0.643537 | 5.3:+13679504 | MS.gene64858:CDS |
| AGCCATGGAAAGTGTGAAGG+GGG | 0.645092 | 5.3:+13673514 | MS.gene64858:CDS |
| TAGACAACAAGCCCAAAGAG+AGG | 0.646603 | 5.3:+13678121 | MS.gene64858:CDS |
| AGTTGGTGGTATGGAAGACG+GGG | 0.655477 | 5.3:+13669163 | MS.gene64858:CDS |
| GAGGCATTGAAAGCCATGGA+TGG | 0.655746 | 5.3:+13670119 | MS.gene64858:CDS |
| TCTGGTGAAGGTGATACTGG+TGG | 0.663250 | 5.3:+13668552 | MS.gene64858:CDS |
| CATTTGTCAGATGGAAACGA+AGG | 0.675140 | 5.3:+13668771 | MS.gene64858:CDS |
| ACAAGATTCGTCTAAACCCG+AGG | 0.677394 | 5.3:+13668746 | MS.gene64858:CDS |
| GAAGGTCCGACTGATACTGG+TGG | 0.678137 | 5.3:+13668789 | MS.gene64858:CDS |
| ACAACTCAAAGCTCTTGAGG+AGG | 0.681638 | 5.3:+13676508 | MS.gene64858:CDS |
| GAACTTGGCAGTCAGATGTG+AGG | 0.690916 | 5.3:+13677073 | MS.gene64858:intron |
| ACAAGATTCGTCAAAACCTG+AGG | 0.691768 | 5.3:+13668914 | MS.gene64858:CDS |
| ACAAGATTCATGTAAACCAG+AGG | 0.708170 | 5.3:+13668830 | MS.gene64858:CDS |
| CAGATGCTGGAAGATATGAG+AGG | 0.711762 | 5.3:+13672468 | MS.gene64858:intron |
| CTAAAAGAGAAAGAGGAATG+GGG | 0.715540 | 5.3:+13676942 | MS.gene64858:CDS |
| GATGGAGGCAGCATCAACTG+GGG | 0.716627 | 5.3:+13673472 | MS.gene64858:CDS |
| CATTTGTCAGATGTAAACGA+AGG | 0.728923 | 5.3:+13668855 | MS.gene64858:CDS |
| AAAAGAAAGGGAAAGCTGGG+AGG | 0.732734 | 5.3:+13674486 | MS.gene64858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13668516 | 13680146 | 13668516 | ID=MS.gene64858 |
| chr5.3 | mRNA | 13668516 | 13680146 | 13668516 | ID=MS.gene64858.t1;Parent=MS.gene64858 |
| chr5.3 | exon | 13668516 | 13669353 | 13668516 | ID=MS.gene64858.t1.exon1;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13668516 | 13669353 | 13668516 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13669474 | 13669589 | 13669474 | ID=MS.gene64858.t1.exon2;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13669474 | 13669589 | 13669474 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13670005 | 13670174 | 13670005 | ID=MS.gene64858.t1.exon3;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13670005 | 13670174 | 13670005 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13671480 | 13671573 | 13671480 | ID=MS.gene64858.t1.exon4;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13671480 | 13671573 | 13671480 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13672471 | 13672557 | 13672471 | ID=MS.gene64858.t1.exon5;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13672471 | 13672557 | 13672471 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13672748 | 13672828 | 13672748 | ID=MS.gene64858.t1.exon6;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13672748 | 13672828 | 13672748 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13673437 | 13673562 | 13673437 | ID=MS.gene64858.t1.exon7;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13673437 | 13673562 | 13673437 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13674484 | 13674592 | 13674484 | ID=MS.gene64858.t1.exon8;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13674484 | 13674592 | 13674484 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13674667 | 13674746 | 13674667 | ID=MS.gene64858.t1.exon9;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13674667 | 13674746 | 13674667 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13676410 | 13676538 | 13676410 | ID=MS.gene64858.t1.exon10;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13676410 | 13676538 | 13676410 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13676631 | 13676731 | 13676631 | ID=MS.gene64858.t1.exon11;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13676631 | 13676731 | 13676631 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13676866 | 13676999 | 13676866 | ID=MS.gene64858.t1.exon12;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13676866 | 13676999 | 13676866 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13677084 | 13677181 | 13677084 | ID=MS.gene64858.t1.exon13;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13677084 | 13677181 | 13677084 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13677290 | 13677409 | 13677290 | ID=MS.gene64858.t1.exon14;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13677290 | 13677409 | 13677290 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13677535 | 13677562 | 13677535 | ID=MS.gene64858.t1.exon15;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13677535 | 13677562 | 13677535 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13677727 | 13677785 | 13677727 | ID=MS.gene64858.t1.exon16;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13677727 | 13677785 | 13677727 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13678113 | 13678184 | 13678113 | ID=MS.gene64858.t1.exon17;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13678113 | 13678184 | 13678113 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13678276 | 13678323 | 13678276 | ID=MS.gene64858.t1.exon18;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13678276 | 13678323 | 13678276 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13679246 | 13679351 | 13679246 | ID=MS.gene64858.t1.exon19;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13679246 | 13679351 | 13679246 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13679467 | 13679525 | 13679467 | ID=MS.gene64858.t1.exon20;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13679467 | 13679525 | 13679467 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| chr5.3 | exon | 13680033 | 13680146 | 13680033 | ID=MS.gene64858.t1.exon21;Parent=MS.gene64858.t1 |
| chr5.3 | CDS | 13680033 | 13680146 | 13680033 | ID=cds.MS.gene64858.t1;Parent=MS.gene64858.t1 |
| Gene Sequence |
| Protein sequence |
