AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64941

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64941.t1 MTR_5g073460 51.575 603 273 9 1 596 101 691 0.0 560
MS.gene64941.t1 MTR_5g073480 46.077 599 241 14 1 591 101 625 8.45e-151 449
MS.gene64941.t1 MTR_5g073450 50.221 452 215 5 159 607 199 643 1.39e-143 431
MS.gene64941.t1 MTR_5g073620 44.299 535 234 9 1 497 101 609 7.14e-134 418
MS.gene64941.t1 MTR_5g073620 39.130 184 108 1 412 595 887 1066 9.94e-31 129
MS.gene64941.t1 MTR_5g074130 41.667 600 317 13 1 595 102 673 5.36e-132 404
MS.gene64941.t1 MTR_5g073920 39.101 601 319 12 1 595 98 657 1.02e-120 374
MS.gene64941.t1 MTR_3g031130 45.154 454 229 7 159 606 189 628 2.40e-115 357
MS.gene64941.t1 MTR_3g464010 34.488 606 346 11 1 595 101 666 2.33e-99 317
MS.gene64941.t1 MTR_4g103540 33.189 461 290 8 144 596 229 679 1.63e-75 254
MS.gene64941.t1 MTR_5g073960 44.970 338 163 8 1 337 101 416 1.12e-73 243
MS.gene64941.t1 MTR_5g073770 42.254 355 160 10 1 342 62 384 2.81e-73 240
MS.gene64941.t1 MTR_7g026630 31.929 451 291 8 167 607 216 660 2.10e-71 243
MS.gene64941.t1 MTR_6g033310 31.685 445 279 8 167 595 288 723 1.85e-68 236
MS.gene64941.t1 MTR_8g021330 29.149 470 313 9 153 608 153 616 1.91e-65 226
MS.gene64941.t1 MTR_7g013770 29.039 458 287 7 160 596 225 665 4.42e-60 212
MS.gene64941.t1 MTR_1g090620 28.571 455 283 7 163 596 207 640 5.76e-58 206
MS.gene64941.t1 MTR_5g073650 37.166 374 169 7 2 356 1 327 5.04e-56 192
MS.gene64941.t1 MTR_1g057560 28.054 442 292 6 163 596 201 624 1.14e-54 196
MS.gene64941.t1 MTR_5g073810 37.067 375 170 7 1 356 102 429 1.60e-54 191
MS.gene64941.t1 MTR_2g096230 27.902 448 291 8 159 596 155 580 3.27e-54 194
MS.gene64941.t1 MTR_1g117090 28.906 512 315 14 136 607 175 677 9.99e-54 195
MS.gene64941.t1 MTR_5g073900 34.286 385 207 7 179 561 1 341 6.29e-52 182
MS.gene64941.t1 MTR_4g062330 29.665 418 276 6 162 566 171 583 8.46e-52 188
MS.gene64941.t1 MTR_5g073820 33.176 425 176 11 27 443 108 432 3.06e-50 181
MS.gene64941.t1 MTR_5g093530 59.756 164 57 6 1 162 102 258 1.52e-46 173
MS.gene64941.t1 MTR_5g093530 33.243 367 206 6 232 597 244 572 5.99e-43 162
MS.gene64941.t1 MTR_3g025900 26.030 461 324 6 139 595 159 606 1.54e-44 168
MS.gene64941.t1 MTR_1g067480 26.386 451 300 12 161 595 166 600 2.30e-43 164
MS.gene64941.t1 MTR_1g067460 25.731 513 337 13 117 599 105 603 8.67e-43 163
MS.gene64941.t1 MTR_5g073610 41.102 236 115 7 1 234 102 315 3.75e-40 149
MS.gene64941.t1 MTR_5g074450 49.198 187 71 5 1 168 101 282 2.32e-38 149
MS.gene64941.t1 MTR_5g073470 43.182 220 83 6 7 224 83 262 1.87e-37 140
MS.gene64941.t1 MTR_5g073750 47.568 185 88 4 1 184 101 277 6.55e-35 134
MS.gene64941.t1 MTR_5g073780 34.286 245 135 4 351 595 3 221 2.47e-33 127
MS.gene64941.t1 MTR_5g073490 42.500 160 75 2 437 596 11 153 8.96e-33 123
MS.gene64941.t1 MTR_1g009620 25.000 448 304 13 168 603 229 656 1.43e-27 118
MS.gene64941.t1 MTR_5g074190 63.043 92 32 1 1 92 95 184 2.57e-27 116
MS.gene64941.t1 MTR_5g073660 35.146 239 81 6 27 241 108 296 3.20e-27 112
MS.gene64941.t1 MTR_5g073840 62.887 97 34 2 3 99 103 197 5.22e-27 110
MS.gene64941.t1 MTR_5g073880 40.331 181 79 5 1 181 102 253 4.17e-26 108
MS.gene64941.t1 MTR_5g074090 49.550 111 49 2 3 109 104 211 1.05e-24 103
MS.gene64941.t1 MTR_5g074150 49.107 112 48 3 3 109 114 221 5.54e-23 99.0
MS.gene64941.t1 MTR_4g008260 24.685 397 258 14 216 600 274 641 4.35e-20 95.1
MS.gene64941.t1 MTR_1g017910 24.586 423 258 13 188 572 267 666 5.48e-20 94.7
MS.gene64941.t1 MTR_5g074070 73.214 56 15 0 3 58 83 138 9.93e-19 86.7
MS.gene64941.t1 MTR_5g074200 44.954 109 53 1 3 111 100 201 1.03e-16 82.0
MS.gene64941.t1 MTR_0229s0040 25.269 186 132 3 420 603 31 211 2.14e-13 70.5
MS.gene64941.t1 MTR_6g078770 48.571 70 36 0 2 71 194 263 2.66e-12 68.9
MS.gene64941.t1 MTR_4g023690 68.293 41 13 0 1 41 46 86 3.23e-12 63.2
MS.gene64941.t1 MTR_5g073850 50.000 72 36 0 4 75 33 104 5.39e-12 65.1
MS.gene64941.t1 MTR_6g078620 41.176 85 49 1 2 86 147 230 2.80e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64941.t1 AT5G58430 45.233 451 224 7 159 606 194 624 1.75e-116 360
MS.gene64941.t1 AT1G07000 37.020 443 251 8 159 596 176 595 1.45e-91 295
MS.gene64941.t1 AT5G13150 32.026 459 285 10 164 607 207 653 2.58e-73 248
MS.gene64941.t1 AT5G50380 30.396 454 284 8 159 596 233 670 1.09e-70 241
MS.gene64941.t1 AT3G14090 29.167 456 309 9 161 607 173 623 9.62e-67 229
MS.gene64941.t1 AT5G13990 32.662 447 274 10 172 607 264 694 3.70e-64 224
MS.gene64941.t1 AT1G72470 29.550 467 312 9 153 607 170 631 6.78e-63 219
MS.gene64941.t1 AT1G54090 29.268 451 298 9 161 598 170 612 1.83e-61 215
MS.gene64941.t1 AT5G03540 29.977 437 277 7 172 596 95 514 1.00e-60 211
MS.gene64941.t1 AT5G03540 29.977 437 277 7 172 596 210 629 6.53e-60 211
MS.gene64941.t1 AT5G03540 29.977 437 277 7 172 596 236 655 1.63e-59 211
MS.gene64941.t1 AT3G29400 27.484 473 297 9 153 595 189 645 2.52e-54 196
MS.gene64941.t1 AT5G52340 27.955 440 293 7 163 596 201 622 1.98e-53 193
MS.gene64941.t1 AT5G59730 27.889 398 272 6 167 554 165 557 1.02e-47 177
MS.gene64941.t1 AT5G59730 27.889 398 272 6 167 554 165 557 1.74e-47 176
MS.gene64941.t1 AT5G52350 25.571 438 306 6 163 596 155 576 2.16e-45 170
MS.gene64941.t1 AT5G61010 25.934 455 308 11 162 607 205 639 1.30e-44 168
MS.gene64941.t1 AT5G61010 25.934 455 308 11 162 607 205 639 1.30e-44 168
MS.gene64941.t1 AT1G07725 25.000 400 282 6 167 560 175 562 3.27e-44 167
MS.gene64941.t1 AT2G28640 26.429 420 293 6 167 577 155 567 9.49e-44 166
MS.gene64941.t1 AT3G09520 26.383 470 310 10 117 560 108 567 1.83e-41 159
MS.gene64941.t1 AT2G39380 24.890 454 320 8 152 595 166 608 7.13e-40 155
MS.gene64941.t1 AT3G09530 24.606 508 344 13 117 595 103 600 1.35e-37 148
MS.gene64941.t1 AT2G28650 25.108 462 314 8 120 568 93 535 2.52e-35 140
MS.gene64941.t1 AT3G55150 23.557 433 303 6 153 571 168 586 6.04e-33 134
MS.gene64941.t1 AT4G31540 21.185 439 325 9 177 608 242 666 4.74e-23 104
MS.gene64941.t1 AT1G51640 22.345 452 318 11 163 596 190 626 1.22e-17 87.4

Find 111 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATAGTGGGCACTTTA+AGG 0.175591 1.2:+34952880 MS.gene64941:CDS
TGAAGGTTGTTGACCGTTTC+CGG 0.200761 1.2:-34952372 None:intergenic
ACTGCAGATGGAACGGATTA+TGG 0.225645 1.2:+34953118 MS.gene64941:CDS
ATTGACTTCCCAACCATATT+AGG 0.227305 1.2:-34953392 None:intergenic
GCATATCATCAACATGCTTT+TGG 0.228013 1.2:+34952263 MS.gene64941:CDS
ACGCATTAAAAGATGGATTA+AGG 0.266521 1.2:+34952554 MS.gene64941:CDS
AGTAAGAACGAATAATAATA+AGG 0.282389 1.2:-34952071 None:intergenic
TATCATGGACGAAACGTTAA+AGG 0.299675 1.2:+34953481 MS.gene64941:CDS
TCTATTAGTGCATCCTAATA+TGG 0.300990 1.2:+34953379 MS.gene64941:CDS
GTAAAATTGATGTTAAATTC+TGG 0.310599 1.2:+34952402 MS.gene64941:CDS
AGTAGGGTCATTAATGATAT+TGG 0.329144 1.2:-34953171 None:intergenic
GTTCCGTATTGTTCTAAAAC+TGG 0.333860 1.2:+34953565 MS.gene64941:CDS
AAGACGATGGAAAATGAATT+AGG 0.336105 1.2:+34953239 MS.gene64941:CDS
CGCTTTCGGCCACAACTTGA+TGG 0.336494 1.2:-34953674 None:intergenic
ATCATTAATGACCCTACTTT+GGG 0.351670 1.2:+34953176 MS.gene64941:CDS
TTCATGATGAAACGGACAAC+GGG 0.362651 1.2:-34952969 None:intergenic
TATCATTAATGACCCTACTT+TGG 0.367693 1.2:+34953175 MS.gene64941:CDS
TTCTTCTCTTTCACTGCAGA+TGG 0.379580 1.2:+34953106 MS.gene64941:CDS
ATACGACTCTGTTGTTTAGA+AGG 0.379638 1.2:+34952742 MS.gene64941:CDS
AAATTGCAATTATTCATTGT+TGG 0.381969 1.2:+34952030 MS.gene64941:CDS
TTCTCCGATAAAATGATGAA+TGG 0.385413 1.2:+34951865 None:intergenic
GTAAAGCGCTGGAATTTCTA+AGG 0.407733 1.2:+34953345 MS.gene64941:CDS
AACATCTGTAAAAGAGATAT+CGG 0.407973 1.2:-34952658 None:intergenic
TAACGCTTTAACCTCGCTTT+CGG 0.408747 1.2:-34953688 None:intergenic
AACAATAGTGGGCACTTTAA+GGG 0.411470 1.2:+34952881 MS.gene64941:CDS
GAGCAGGTGTTTGAAGATCA+TGG 0.411984 1.2:+34953029 MS.gene64941:CDS
TTGATCATTCGCTATGACAT+TGG 0.414014 1.2:-34952715 None:intergenic
CAAAACAGAGACTCAAAATT+CGG 0.415298 1.2:-34952798 None:intergenic
CAATTATTCATTGTTGGAGC+TGG 0.415777 1.2:+34952036 MS.gene64941:CDS
TGATCATTCGCTATGACATT+GGG 0.418030 1.2:-34952714 None:intergenic
TAATTGTGTACAGCAGTTGC+AGG 0.422649 1.2:+34952442 MS.gene64941:CDS
AAGATATAATAGCTTACCTT+GGG 0.424097 1.2:+34953504 MS.gene64941:CDS
CGGCAAAGTATAATCATGTT+TGG 0.427404 1.2:-34953072 None:intergenic
CAGCTTATAGAAACTTCATT+TGG 0.428468 1.2:+34953540 MS.gene64941:CDS
CAAATGAAGTTTCTATAAGC+TGG 0.438993 1.2:-34953539 None:intergenic
CCAACATCTATTGGAGTTGA+AGG 0.440902 1.2:-34952096 None:intergenic
TTGCAGGAGGAAATGCTTAG+AGG 0.446495 1.2:+34952458 MS.gene64941:CDS
GAAACGAGGCTATATGCATC+TGG 0.448103 1.2:-34951892 None:intergenic
CTCTTTCACTGCAGATGGAA+CGG 0.453354 1.2:+34953111 MS.gene64941:CDS
AGATCATGGACATGTGTTGC+TGG 0.455080 1.2:+34953043 MS.gene64941:CDS
AGTGGGCACTTTAAGGGAGT+TGG 0.455626 1.2:+34952887 MS.gene64941:CDS
TCAATCCTTGTGGTTTATCA+TGG 0.460977 1.2:+34953466 MS.gene64941:CDS
AACGGACAACGGGGTGAAGC+TGG 0.465035 1.2:-34952959 None:intergenic
TCTCCGATAAAATGATGAAT+GGG 0.465936 1.2:+34951866 None:intergenic
ATGTCATTACTAGCTAAGTC+TGG 0.470583 1.2:-34952180 None:intergenic
GATAGTCACATATGTAGGTT+AGG 0.475909 1.2:-34952995 None:intergenic
ACAATTCGCCTCGAAGCTCC+AGG 0.476456 1.2:+34952915 MS.gene64941:CDS
GGAAGTGCTGTCGCCGGAAA+CGG 0.478745 1.2:+34952359 MS.gene64941:CDS
GTGTTGCAGAGTACTTTAGA+AGG 0.484942 1.2:+34953143 MS.gene64941:CDS
GTAAGAACGAATAATAATAA+GGG 0.486646 1.2:-34952070 None:intergenic
GCAAACTCAGTGTGGATTTG+AGG 0.489879 1.2:+34951954 MS.gene64941:CDS
GATGTTATCTGAACGTAGCT+TGG 0.491399 1.2:+34952320 MS.gene64941:CDS
AGCGCTGGAATTTCTAAGGC+TGG 0.495655 1.2:+34953349 MS.gene64941:CDS
ATCAATACAGTGTGTCACTA+AGG 0.498286 1.2:+34952823 MS.gene64941:CDS
GAAGATATAATAGCTTACCT+TGG 0.498331 1.2:+34953503 MS.gene64941:CDS
TAGTGCATCCTAATATGGTT+GGG 0.499130 1.2:+34953384 MS.gene64941:CDS
AAGCTCGTGGGGTAAAGCGC+TGG 0.504187 1.2:+34953334 MS.gene64941:CDS
AAGTAAACATAACCCAAAGT+AGG 0.504539 1.2:-34953188 None:intergenic
GAAATTGGGAGAAACAATAG+TGG 0.505669 1.2:+34952869 MS.gene64941:CDS
GCGCGTTCCCTGGAGCTTCG+AGG 0.506803 1.2:-34952923 None:intergenic
CAGTATGAATGTTCTTCAGC+AGG 0.507711 1.2:+34952233 MS.gene64941:CDS
CCTTCAACTCCAATAGATGT+TGG 0.507870 1.2:+34952096 MS.gene64941:CDS
GGAAACGGTCAACAACCTTC+AGG 0.510150 1.2:+34952374 MS.gene64941:CDS
TTAGTGCATCCTAATATGGT+TGG 0.522674 1.2:+34953383 MS.gene64941:CDS
TTTACTTAATGAATAGCAGC+AGG 0.523358 1.2:+34953204 MS.gene64941:CDS
TTAGGTAATTCATGATGAAA+CGG 0.535259 1.2:-34952977 None:intergenic
GTAGCATGATGGAACAGCTC+AGG 0.537281 1.2:+34952208 MS.gene64941:CDS
GAAATGCTTAGAGGAGTGCC+TGG 0.540833 1.2:+34952467 MS.gene64941:CDS
TTATCTGAACGTAGCTTGGA+AGG 0.542260 1.2:+34952324 MS.gene64941:CDS
GATGTTAACATGAAAGATCT+CGG 0.546208 1.2:+34952528 MS.gene64941:CDS
TACTCAATGTATCTATCAGT+GGG 0.549550 1.2:-34953599 None:intergenic
TCGGACTACGCATTAAAAGA+TGG 0.549828 1.2:+34952547 MS.gene64941:CDS
TGAATATATCAGAAGCTCGT+GGG 0.550208 1.2:+34953322 MS.gene64941:CDS
TTGCAGAGTTGCCGCTCAGT+GGG 0.558130 1.2:-34952606 None:intergenic
AGTAAACATAACCCAAAGTA+GGG 0.559274 1.2:-34953187 None:intergenic
CTTGGAAGGAATGCTCATGT+TGG 0.566255 1.2:+34952338 MS.gene64941:CDS
CCGTATTGTTCTAAAACTGG+AGG 0.573084 1.2:+34953568 MS.gene64941:CDS
TTCGGCCACAACTTGATGGA+CGG 0.574902 1.2:-34953670 None:intergenic
CTATCGTGAGATATTAGAGC+AGG 0.579080 1.2:+34953013 MS.gene64941:CDS
GGGAAAATTCAGCAAACGAA+TGG 0.586034 1.2:-34952694 None:intergenic
ATACTCAATGTATCTATCAG+TGG 0.586906 1.2:-34953600 None:intergenic
TTCTAAACAACAGAGTCGTA+TGG 0.586913 1.2:-34952740 None:intergenic
CTCACGATAGTCACATATGT+AGG 0.588550 1.2:-34953000 None:intergenic
AACTCAGTGTGGATTTGAGG+TGG 0.589140 1.2:+34951957 MS.gene64941:CDS
ATTGCAGAGTTGCCGCTCAG+TGG 0.593072 1.2:-34952607 None:intergenic
TGACATCGCTAGTAGCATGA+TGG 0.594262 1.2:+34952197 MS.gene64941:CDS
TCAAGTTGTGGCCGAAAGCG+AGG 0.596008 1.2:+34953677 MS.gene64941:CDS
GTTAAATTCTGGTTTCAACA+AGG 0.597050 1.2:+34952413 MS.gene64941:CDS
GGACCAGAAAACGAGTGCCC+CGG 0.600270 1.2:+34952117 MS.gene64941:CDS
TGTAAAAGAGATATCGGAGA+TGG 0.600795 1.2:-34952652 None:intergenic
TTCAGATAATCTTACTATCG+AGG 0.601805 1.2:+34952506 MS.gene64941:CDS
CATGTTGGAAGTGCTGTCGC+CGG 0.607825 1.2:+34952353 MS.gene64941:CDS
ATGAATATATCAGAAGCTCG+TGG 0.618106 1.2:+34953321 MS.gene64941:CDS
TATGCAAAGCTCAATCCTTG+TGG 0.618269 1.2:+34953456 MS.gene64941:CDS
CAACATCTATTGGAGTTGAA+GGG 0.625133 1.2:-34952095 None:intergenic
GTACATAATTCTAAAGACGA+TGG 0.626433 1.2:+34953226 MS.gene64941:CDS
TTGTGTACAGCAGTTGCAGG+AGG 0.632500 1.2:+34952445 MS.gene64941:CDS
ATTCATGATGAAACGGACAA+CGG 0.633528 1.2:-34952970 None:intergenic
ACTGAGAGACATGATAGCAA+AGG 0.635544 1.2:-34951923 None:intergenic
ATATACCGTCCATCAAGTTG+TGG 0.635597 1.2:+34953665 MS.gene64941:CDS
CAAAGGAAGCACTTGAAACG+AGG 0.637344 1.2:-34951906 None:intergenic
GAATATATCAGAAGCTCGTG+GGG 0.638074 1.2:+34953323 MS.gene64941:CDS
TTGTCGAGGCAAACTCAGTG+TGG 0.642765 1.2:+34951946 MS.gene64941:CDS
AGATATTGTTTCCCACTGAG+CGG 0.652291 1.2:+34952595 MS.gene64941:CDS
TCATGTCTCTCAGTTTGTCG+AGG 0.656703 1.2:+34951932 MS.gene64941:CDS
AAATTGGGAGAAACAATAGT+GGG 0.660777 1.2:+34952870 MS.gene64941:CDS
CAATTCGCCTCGAAGCTCCA+GGG 0.662148 1.2:+34952916 MS.gene64941:CDS
TTCGTCCATGATAAACCACA+AGG 0.691767 1.2:-34953471 None:intergenic
GCAGATGGAACGGATTATGG+AGG 0.695571 1.2:+34953121 MS.gene64941:CDS
TCATGATGAAACGGACAACG+GGG 0.707026 1.2:-34952968 None:intergenic
AGATATAATAGCTTACCTTG+GGG 0.709696 1.2:+34953505 MS.gene64941:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATAATTGTTTTACC+AGG - chr1.2:34952488-34952507 None:intergenic 15.0%
!! AAATTGCAATTATTCATTGT+TGG + chr1.2:34952030-34952049 MS.gene64941:CDS 20.0%
!! AGTAAGAACGAATAATAATA+AGG - chr1.2:34952074-34952093 None:intergenic 20.0%
!! GTAAAATTGATGTTAAATTC+TGG + chr1.2:34952402-34952421 MS.gene64941:CDS 20.0%
!! GTAAGAACGAATAATAATAA+GGG - chr1.2:34952073-34952092 None:intergenic 20.0%
!!! AAACACAGTTTTAAAGAAAT+TGG + chr1.2:34952854-34952873 MS.gene64941:CDS 20.0%
!!! AACACAGTTTTAAAGAAATT+GGG + chr1.2:34952855-34952874 MS.gene64941:CDS 20.0%
! AACATCTGTAAAAGAGATAT+CGG - chr1.2:34952661-34952680 None:intergenic 25.0%
! AAGATATAATAGCTTACCTT+GGG + chr1.2:34953504-34953523 MS.gene64941:CDS 25.0%
! TTAGGTAATTCATGATGAAA+CGG - chr1.2:34952980-34952999 None:intergenic 25.0%
!!! GATCTTCTTTACTTTTTTCT+CGG + chr1.2:34951979-34951998 MS.gene64941:CDS 25.0%
AAATTGGGAGAAACAATAGT+GGG + chr1.2:34952870-34952889 MS.gene64941:CDS 30.0%
AAGACGATGGAAAATGAATT+AGG + chr1.2:34953239-34953258 MS.gene64941:CDS 30.0%
AAGTAAACATAACCCAAAGT+AGG - chr1.2:34953191-34953210 None:intergenic 30.0%
AGATATAATAGCTTACCTTG+GGG + chr1.2:34953505-34953524 MS.gene64941:CDS 30.0%
AGTAAACATAACCCAAAGTA+GGG - chr1.2:34953190-34953209 None:intergenic 30.0%
AGTAGGGTCATTAATGATAT+TGG - chr1.2:34953174-34953193 None:intergenic 30.0%
ATACTCAATGTATCTATCAG+TGG - chr1.2:34953603-34953622 None:intergenic 30.0%
ATCATTAATGACCCTACTTT+GGG + chr1.2:34953176-34953195 MS.gene64941:CDS 30.0%
CAAAACAGAGACTCAAAATT+CGG - chr1.2:34952801-34952820 None:intergenic 30.0%
CAAATGAAGTTTCTATAAGC+TGG - chr1.2:34953542-34953561 None:intergenic 30.0%
CAGCTTATAGAAACTTCATT+TGG + chr1.2:34953540-34953559 MS.gene64941:CDS 30.0%
GAAGATATAATAGCTTACCT+TGG + chr1.2:34953503-34953522 MS.gene64941:CDS 30.0%
GATGTTAACATGAAAGATCT+CGG + chr1.2:34952528-34952547 MS.gene64941:CDS 30.0%
TACTCAATGTATCTATCAGT+GGG - chr1.2:34953602-34953621 None:intergenic 30.0%
TATCATTAATGACCCTACTT+TGG + chr1.2:34953175-34953194 MS.gene64941:CDS 30.0%
TCTATTAGTGCATCCTAATA+TGG + chr1.2:34953379-34953398 MS.gene64941:CDS 30.0%
TTCAGATAATCTTACTATCG+AGG + chr1.2:34952506-34952525 MS.gene64941:CDS 30.0%
TTTACTTAATGAATAGCAGC+AGG + chr1.2:34953204-34953223 MS.gene64941:CDS 30.0%
! AATGAATTAGGAGCTCTTTT+AGG + chr1.2:34953251-34953270 MS.gene64941:CDS 30.0%
! ATGAATTAGGAGCTCTTTTA+GGG + chr1.2:34953252-34953271 MS.gene64941:CDS 30.0%
! CTCTTTTACAGATGTTTGTA+GGG + chr1.2:34952665-34952684 MS.gene64941:CDS 30.0%
! GAACTACTGAATTTTCATCT+TGG - chr1.2:34952146-34952165 None:intergenic 30.0%
! GTACATAATTCTAAAGACGA+TGG + chr1.2:34953226-34953245 MS.gene64941:CDS 30.0%
! TCAATTTTACAGTTTCCTGA+AGG - chr1.2:34952392-34952411 None:intergenic 30.0%
! TCTCTTTTACAGATGTTTGT+AGG + chr1.2:34952664-34952683 MS.gene64941:CDS 30.0%
! TGAATTTTCATCTTGGATTC+CGG - chr1.2:34952139-34952158 None:intergenic 30.0%
!! ACGCATTAAAAGATGGATTA+AGG + chr1.2:34952554-34952573 MS.gene64941:CDS 30.0%
!! GTTAAATTCTGGTTTCAACA+AGG + chr1.2:34952413-34952432 MS.gene64941:CDS 30.0%
AGAGAAGAAGAAGAAGAAGA+CGG - chr1.2:34953095-34953114 None:intergenic 35.0%
ATGAATATATCAGAAGCTCG+TGG + chr1.2:34953321-34953340 MS.gene64941:CDS 35.0%
ATGTCATTACTAGCTAAGTC+TGG - chr1.2:34952183-34952202 None:intergenic 35.0%
ATTCATGATGAAACGGACAA+CGG - chr1.2:34952973-34952992 None:intergenic 35.0%
CAACATCTATTGGAGTTGAA+GGG - chr1.2:34952098-34952117 None:intergenic 35.0%
CAATTATTCATTGTTGGAGC+TGG + chr1.2:34952036-34952055 MS.gene64941:CDS 35.0%
CGGCAAAGTATAATCATGTT+TGG - chr1.2:34953075-34953094 None:intergenic 35.0%
GAAATTGGGAGAAACAATAG+TGG + chr1.2:34952869-34952888 MS.gene64941:CDS 35.0%
GATAGTCACATATGTAGGTT+AGG - chr1.2:34952998-34953017 None:intergenic 35.0%
TAGTGCATCCTAATATGGTT+GGG + chr1.2:34953384-34953403 MS.gene64941:CDS 35.0%
TATCATGGACGAAACGTTAA+AGG + chr1.2:34953481-34953500 MS.gene64941:CDS 35.0%
TCAATCCTTGTGGTTTATCA+TGG + chr1.2:34953466-34953485 MS.gene64941:CDS 35.0%
TGAATATATCAGAAGCTCGT+GGG + chr1.2:34953322-34953341 MS.gene64941:CDS 35.0%
TGATCATTCGCTATGACATT+GGG - chr1.2:34952717-34952736 None:intergenic 35.0%
TGTAAAAGAGATATCGGAGA+TGG - chr1.2:34952655-34952674 None:intergenic 35.0%
TTAGTGCATCCTAATATGGT+TGG + chr1.2:34953383-34953402 MS.gene64941:CDS 35.0%
TTCTAAACAACAGAGTCGTA+TGG - chr1.2:34952743-34952762 None:intergenic 35.0%
TTGATCATTCGCTATGACAT+TGG - chr1.2:34952718-34952737 None:intergenic 35.0%
! AATTTTCATCTTGGATTCCG+GGG - chr1.2:34952137-34952156 None:intergenic 35.0%
! ATACGACTCTGTTGTTTAGA+AGG + chr1.2:34952742-34952761 MS.gene64941:CDS 35.0%
! ATCAATACAGTGTGTCACTA+AGG + chr1.2:34952823-34952842 MS.gene64941:CDS 35.0%
! ATTGACTTCCCAACCATATT+AGG - chr1.2:34953395-34953414 None:intergenic 35.0%
! GAATTTTCATCTTGGATTCC+GGG - chr1.2:34952138-34952157 None:intergenic 35.0%
! GCATATCATCAACATGCTTT+TGG + chr1.2:34952263-34952282 MS.gene64941:CDS 35.0%
! TGAATTAGGAGCTCTTTTAG+GGG + chr1.2:34953253-34953272 MS.gene64941:CDS 35.0%
!! AAACAATAGTGGGCACTTTA+AGG + chr1.2:34952880-34952899 MS.gene64941:CDS 35.0%
!! AACAATAGTGGGCACTTTAA+GGG + chr1.2:34952881-34952900 MS.gene64941:CDS 35.0%
!! GTTCCGTATTGTTCTAAAAC+TGG + chr1.2:34953565-34953584 MS.gene64941:CDS 35.0%
!! TTTTCTGGTCCAACATCTAT+TGG - chr1.2:34952108-34952127 None:intergenic 35.0%
!!! CCTCCAGTTTTAGAACAATA+CGG - chr1.2:34953571-34953590 None:intergenic 35.0%
ACTGAGAGACATGATAGCAA+AGG - chr1.2:34951926-34951945 None:intergenic 40.0%
AGATATTGTTTCCCACTGAG+CGG + chr1.2:34952595-34952614 MS.gene64941:CDS 40.0%
CAGTATGAATGTTCTTCAGC+AGG + chr1.2:34952233-34952252 MS.gene64941:CDS 40.0%
CCAACATCTATTGGAGTTGA+AGG - chr1.2:34952099-34952118 None:intergenic 40.0%
CCTTCAACTCCAATAGATGT+TGG + chr1.2:34952096-34952115 MS.gene64941:CDS 40.0%
CTATCGTGAGATATTAGAGC+AGG + chr1.2:34953013-34953032 MS.gene64941:CDS 40.0%
CTCACGATAGTCACATATGT+AGG - chr1.2:34953003-34953022 None:intergenic 40.0%
GAATATATCAGAAGCTCGTG+GGG + chr1.2:34953323-34953342 MS.gene64941:CDS 40.0%
GATGTTATCTGAACGTAGCT+TGG + chr1.2:34952320-34952339 MS.gene64941:CDS 40.0%
GGGAAAATTCAGCAAACGAA+TGG - chr1.2:34952697-34952716 None:intergenic 40.0%
TAATTGTGTACAGCAGTTGC+AGG + chr1.2:34952442-34952461 MS.gene64941:CDS 40.0%
TATGCAAAGCTCAATCCTTG+TGG + chr1.2:34953456-34953475 MS.gene64941:CDS 40.0%
TCGGACTACGCATTAAAAGA+TGG + chr1.2:34952547-34952566 MS.gene64941:CDS 40.0%
TTATCTGAACGTAGCTTGGA+AGG + chr1.2:34952324-34952343 MS.gene64941:CDS 40.0%
TTCATGATGAAACGGACAAC+GGG - chr1.2:34952972-34952991 None:intergenic 40.0%
TTCGTCCATGATAAACCACA+AGG - chr1.2:34953474-34953493 None:intergenic 40.0%
TTCTTCTCTTTCACTGCAGA+TGG + chr1.2:34953106-34953125 MS.gene64941:CDS 40.0%
! ATATACCGTCCATCAAGTTG+TGG + chr1.2:34953665-34953684 MS.gene64941:CDS 40.0%
! GTGTTGCAGAGTACTTTAGA+AGG + chr1.2:34953143-34953162 MS.gene64941:CDS 40.0%
!! CCGTATTGTTCTAAAACTGG+AGG + chr1.2:34953568-34953587 MS.gene64941:CDS 40.0%
!! GTAAAGCGCTGGAATTTCTA+AGG + chr1.2:34953345-34953364 MS.gene64941:CDS 40.0%
AACTCAGTGTGGATTTGAGG+TGG + chr1.2:34951957-34951976 MS.gene64941:CDS 45.0%
AGATCATGGACATGTGTTGC+TGG + chr1.2:34953043-34953062 MS.gene64941:CDS 45.0%
CTCTTTCACTGCAGATGGAA+CGG + chr1.2:34953111-34953130 MS.gene64941:CDS 45.0%
CTTGGAAGGAATGCTCATGT+TGG + chr1.2:34952338-34952357 MS.gene64941:CDS 45.0%
GAAACGAGGCTATATGCATC+TGG - chr1.2:34951895-34951914 None:intergenic 45.0%
GAGCAGGTGTTTGAAGATCA+TGG + chr1.2:34953029-34953048 MS.gene64941:CDS 45.0%
GCAAACTCAGTGTGGATTTG+AGG + chr1.2:34951954-34951973 MS.gene64941:CDS 45.0%
TCATGATGAAACGGACAACG+GGG - chr1.2:34952971-34952990 None:intergenic 45.0%
TCATGTCTCTCAGTTTGTCG+AGG + chr1.2:34951932-34951951 MS.gene64941:CDS 45.0%
TGAAGGTTGTTGACCGTTTC+CGG - chr1.2:34952375-34952394 None:intergenic 45.0%
TGACATCGCTAGTAGCATGA+TGG + chr1.2:34952197-34952216 MS.gene64941:CDS 45.0%
TTGCAGGAGGAAATGCTTAG+AGG + chr1.2:34952458-34952477 MS.gene64941:CDS 45.0%
!! ACTGCAGATGGAACGGATTA+TGG + chr1.2:34953118-34953137 MS.gene64941:CDS 45.0%
!! CAAAGGAAGCACTTGAAACG+AGG - chr1.2:34951909-34951928 None:intergenic 45.0%
!! TTAGGAGCTCTTTTAGGGGA+TGG + chr1.2:34953257-34953276 MS.gene64941:CDS 45.0%
!!! CATCAACATGCTTTTGGAGC+AGG + chr1.2:34952269-34952288 MS.gene64941:CDS 45.0%
!!! CATGCTTTTGGAGCAGGAAA+AGG + chr1.2:34952275-34952294 MS.gene64941:CDS 45.0%
GGAAACGGTCAACAACCTTC+AGG + chr1.2:34952374-34952393 MS.gene64941:CDS 50.0%
TGAAGCTGGCCACCAAAAAC+TGG - chr1.2:34952948-34952967 None:intergenic 50.0%
TTCGGCCACAACTTGATGGA+CGG - chr1.2:34953673-34953692 None:intergenic 50.0%
TTGTCGAGGCAAACTCAGTG+TGG + chr1.2:34951946-34951965 MS.gene64941:CDS 50.0%
TTGTGTACAGCAGTTGCAGG+AGG + chr1.2:34952445-34952464 MS.gene64941:CDS 50.0%
! AGTGGGCACTTTAAGGGAGT+TGG + chr1.2:34952887-34952906 MS.gene64941:CDS 50.0%
! CTGGCAACAAGTTTTCCCCA+AGG - chr1.2:34953523-34953542 None:intergenic 50.0%
! GTAGCATGATGGAACAGCTC+AGG + chr1.2:34952208-34952227 MS.gene64941:CDS 50.0%
!! AGCGCTGGAATTTCTAAGGC+TGG + chr1.2:34953349-34953368 MS.gene64941:CDS 50.0%
!! GAAATGCTTAGAGGAGTGCC+TGG + chr1.2:34952467-34952486 MS.gene64941:CDS 50.0%
!! GCAGATGGAACGGATTATGG+AGG + chr1.2:34953121-34953140 MS.gene64941:CDS 50.0%
ACAATTCGCCTCGAAGCTCC+AGG + chr1.2:34952915-34952934 MS.gene64941:CDS 55.0%
ATTGCAGAGTTGCCGCTCAG+TGG - chr1.2:34952610-34952629 None:intergenic 55.0%
CAATTCGCCTCGAAGCTCCA+GGG + chr1.2:34952916-34952935 MS.gene64941:CDS 55.0%
CGCTTTCGGCCACAACTTGA+TGG - chr1.2:34953677-34953696 None:intergenic 55.0%
TTGCAGAGTTGCCGCTCAGT+GGG - chr1.2:34952609-34952628 None:intergenic 55.0%
! TCAAGTTGTGGCCGAAAGCG+AGG + chr1.2:34953677-34953696 MS.gene64941:CDS 55.0%
!! ATTCCGGGGCACTCGTTTTC+TGG - chr1.2:34952123-34952142 None:intergenic 55.0%
!! CATGTTGGAAGTGCTGTCGC+CGG + chr1.2:34952353-34952372 MS.gene64941:CDS 55.0%
AACGGACAACGGGGTGAAGC+TGG - chr1.2:34952962-34952981 None:intergenic 60.0%
AAGCTCGTGGGGTAAAGCGC+TGG + chr1.2:34953334-34953353 MS.gene64941:CDS 60.0%
CCAAAAACTGGCGCGTTCCC+TGG - chr1.2:34952936-34952955 None:intergenic 60.0%
GGACCAGAAAACGAGTGCCC+CGG + chr1.2:34952117-34952136 MS.gene64941:CDS 60.0%
! CCAGGGAACGCGCCAGTTTT+TGG + chr1.2:34952933-34952952 MS.gene64941:CDS 60.0%
!! GGAAGTGCTGTCGCCGGAAA+CGG + chr1.2:34952359-34952378 MS.gene64941:CDS 60.0%
!! GGGAACGCGCCAGTTTTTGG+TGG + chr1.2:34952936-34952955 MS.gene64941:CDS 60.0%
GCGCGTTCCCTGGAGCTTCG+AGG - chr1.2:34952926-34952945 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34951877 34953703 34951877 ID=MS.gene64941
chr1.2 mRNA 34951877 34953703 34951877 ID=MS.gene64941.t1;Parent=MS.gene64941
chr1.2 exon 34951877 34953703 34951877 ID=MS.gene64941.t1.exon1;Parent=MS.gene64941.t1
chr1.2 CDS 34951877 34953703 34951877 ID=cds.MS.gene64941.t1;Parent=MS.gene64941.t1
Gene Sequence

>MS.gene64941

ATGATGAATGGGAAACCAGATGCATATAGCCTCGTTTCAAGTGCTTCCTTTGCTATCATGTCTCTCAGTTTGTCGAGGCAAACTCAGTGTGGATTTGAGGTGGATCTTCTTTACTTTTTTCTCGGATGTTTAATTGTACAACTAATGAAGATTAAATTGCAATTATTCATTGTTGGAGCTGGTTTCAGTTATTCCCTTATTATTATTCGTTCTTACTTCCCTTCAACTCCAATAGATGTTGGACCAGAAAACGAGTGCCCCGGAATCCAAGATGAAAATTCAGTAGTTCTTCATGTCATTTCTCCAGACTTAGCTAGTAATGACATCGCTAGTAGCATGATGGAACAGCTCAGGATCAGTATGAATGTTCTTCAGCAGGAAAATTTGCATATCATCAACATGCTTTTGGAGCAGGAAAAGGAATATTGTGACAATGCATCGTTGATGTTATCTGAACGTAGCTTGGAAGGAATGCTCATGTTGGAAGTGCTGTCGCCGGAAACGGTCAACAACCTTCAGGAAACTGTAAAATTGATGTTAAATTCTGGTTTCAACAAGGAGTGCTTAATTGTGTACAGCAGTTGCAGGAGGAAATGCTTAGAGGAGTGCCTGGTAAAACAATTATTAAATTCAGATAATCTTACTATCGAGGATGTTAACATGAAAGATCTCGGACTACGCATTAAAAGATGGATTAAGGCTTTCAAAGTTGCATTCAAGATATTGTTTCCCACTGAGCGGCAACTCTGCAATATTGTTTTCTCTGAGTTCTCTGCCATCTCCGATATCTCTTTTACAGATGTTTGTAGGGAATTCACCATTCGTTTGCTGAATTTTCCCAATGTCATAGCGAATGATCAAAGCCATACGACTCTGTTGTTTAGAAGGCTCGACATGTATGAAACATTGCATGACATAATTCCGAATTTTGAGTCTCTGTTTTGTGATCAATACAGTGTGTCACTAAGGAATGAATTAAACACAGTTTTAAAGAAATTGGGAGAAACAATAGTGGGCACTTTAAGGGAGTTGGAAAATACAATTCGCCTCGAAGCTCCAGGGAACGCGCCAGTTTTTGGTGGCCAGCTTCACCCCGTTGTCCGTTTCATCATGAATTACCTAACCTACATATGTGACTATCGTGAGATATTAGAGCAGGTGTTTGAAGATCATGGACATGTGTTGCTGGAACACACCAAACATGATTATACTTTGCCGTCTTCTTCTTCTTCTTCTCTTTCACTGCAGATGGAACGGATTATGGAGGTGTTGCAGAGTACTTTAGAAGGTACGTCCAATATCATTAATGACCCTACTTTGGGTTATGTTTACTTAATGAATAGCAGCAGGTACATAATTCTAAAGACGATGGAAAATGAATTAGGAGCTCTTTTAGGGGATGGTATGTTGCAAAGACACAGAGCGAAATTACGATACAACTTTGATGAATATATCAGAAGCTCGTGGGGTAAAGCGCTGGAATTTCTAAGGCTGGACAACAATCTATTAGTGCATCCTAATATGGTTGGGAAGTCAATGAAGAAGCAGCTCAAATCTTTCAACAAACAGTTTAATGAAATATGCAAAGCTCAATCCTTGTGGTTTATCATGGACGAAACGTTAAAGGAAGATATAATAGCTTACCTTGGGGAAAACTTGTTGCCAGCTTATAGAAACTTCATTTGGAAGTTCCGTATTGTTCTAAAACTGGAGGTTAAAAAGCCCACTGATAGATACATTGAGTATGAAACGAAAGATATTAAAGCAATACTCAACAATATGTTTAAGATATACCGTCCATCAAGTTGTGGCCGAAAGCGAGGTTAA
Protein sequence

>MS.gene64941.t1

MMNGKPDAYSLVSSASFAIMSLSLSRQTQCGFEVDLLYFFLGCLIVQLMKIKLQLFIVGAGFSYSLIIIRSYFPSTPIDVGPENECPGIQDENSVVLHVISPDLASNDIASSMMEQLRISMNVLQQENLHIINMLLEQEKEYCDNASLMLSERSLEGMLMLEVLSPETVNNLQETVKLMLNSGFNKECLIVYSSCRRKCLEECLVKQLLNSDNLTIEDVNMKDLGLRIKRWIKAFKVAFKILFPTERQLCNIVFSEFSAISDISFTDVCREFTIRLLNFPNVIANDQSHTTLLFRRLDMYETLHDIIPNFESLFCDQYSVSLRNELNTVLKKLGETIVGTLRELENTIRLEAPGNAPVFGGQLHPVVRFIMNYLTYICDYREILEQVFEDHGHVLLEHTKHDYTLPSSSSSSLSLQMERIMEVLQSTLEGTSNIINDPTLGYVYLMNSSRYIILKTMENELGALLGDGMLQRHRAKLRYNFDEYIRSSWGKALEFLRLDNNLLVHPNMVGKSMKKQLKSFNKQFNEICKAQSLWFIMDETLKEDIIAYLGENLLPAYRNFIWKFRIVLKLEVKKPTDRYIEYETKDIKAILNNMFKIYRPSSCGRKRG